Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003283
(621 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002686067.1| PREDICTED: S100 calcium-binding protein A6-l... 140 8e-34
Alignment gi|XP_001788201.1| PREDICTED: S100 calcium-binding protein A6-l... 140 8e-34
Alignment gi|NP_001179144.1| protein S100-A5 [Bos taurus]. 99 3e-21
Alignment gi|NP_001029539.1| protein S100-A2 [Bos taurus]. 99 3e-21
Alignment gi|XP_002686047.1| PREDICTED: S100 calcium binding protein A5-l... 99 3e-21
Alignment gi|NP_777020.1| protein S100-A4 [Bos taurus]. 93 2e-19
Alignment gi|NP_001179595.1| protein S100-Z [Bos taurus]. 73 2e-13
Alignment gi|NP_001092512.1| S100 calcium binding protein A1 [Bos taurus]. 73 2e-13
Alignment gi|XP_002690462.1| PREDICTED: S100 calcium binding protein, zet... 73 2e-13
Alignment gi|XP_001253745.1| PREDICTED: S100 calcium binding protein A1 i... 73 2e-13
>ref|XP_002686067.1| PREDICTED: S100 calcium-binding protein A6-like [Bos taurus].
Length = 142
Score = 140 bits (353), Expect = 8e-34
Identities = 70/86 (81%), Positives = 79/86 (91%)
Frame = +3
Query: 75 PLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELTIGAKLQDAEIAKLMDDLDRN 254
PLDQAI LLVAI HKYSG EG KNT SK ELKEL+QKELT+G K+QDAEIA+LMD+LD+N
Sbjct: 56 PLDQAISLLVAICHKYSGCEGVKNTRSKKELKELVQKELTLGEKMQDAEIAELMDELDQN 115
Query: 255 KDQVVNFQEYVTFLGALAMIYNDVLR 332
KDQVVNFQEYVTFLGALAMIYN++L+
Sbjct: 116 KDQVVNFQEYVTFLGALAMIYNELLQ 141
>ref|XP_001788201.1| PREDICTED: S100 calcium-binding protein A6-like [Bos taurus].
Length = 142
Score = 140 bits (353), Expect = 8e-34
Identities = 70/86 (81%), Positives = 79/86 (91%)
Frame = +3
Query: 75 PLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELTIGAKLQDAEIAKLMDDLDRN 254
PLDQAI LLVAI HKYSG EG KNT SK ELKEL+QKELT+G K+QDAEIA+LMD+LD+N
Sbjct: 56 PLDQAISLLVAICHKYSGCEGVKNTRSKKELKELVQKELTLGEKMQDAEIAELMDELDQN 115
Query: 255 KDQVVNFQEYVTFLGALAMIYNDVLR 332
KDQVVNFQEYVTFLGALAMIYN++L+
Sbjct: 116 KDQVVNFQEYVTFLGALAMIYNELLQ 141
>ref|NP_001179144.1| protein S100-A5 [Bos taurus].
Length = 93
Score = 99.0 bits (245), Expect = 3e-21
Identities = 47/86 (54%), Positives = 62/86 (72%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELTIGAKLQDAEIAKLMDDL 245
M PL++A+ +V FHKYSGREG K TLS+ ELKELI+KEL +G K++++ I LM L
Sbjct: 1 METPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLGEKMRESSIDDLMKSL 60
Query: 246 DRNKDQVVNFQEYVTFLGALAMIYND 323
D+N DQ ++F+EY FL L M YND
Sbjct: 61 DKNSDQEIDFKEYSVFLTTLCMAYND 86
>ref|NP_001029539.1| protein S100-A2 [Bos taurus].
Length = 97
Score = 99.0 bits (245), Expect = 3e-21
Identities = 48/92 (52%), Positives = 65/92 (70%), Gaps = 2/92 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
M+ PL+QA+ ++VA FHKYSG+EGDK LSK E+KEL+ KEL +G K+ + + KLM
Sbjct: 1 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYNDVLRG 335
DLD N DQ V+FQEY FL + ++ ND +G
Sbjct: 61 DLDENSDQQVDFQEYAVFLALITIMCNDFFQG 92
>ref|XP_002686047.1| PREDICTED: S100 calcium binding protein A5-like [Bos taurus].
Length = 93
Score = 99.0 bits (245), Expect = 3e-21
Identities = 47/86 (54%), Positives = 62/86 (72%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELTIGAKLQDAEIAKLMDDL 245
M PL++A+ +V FHKYSGREG K TLS+ ELKELI+KEL +G K++++ I LM L
Sbjct: 1 METPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLGEKMRESSIDDLMKSL 60
Query: 246 DRNKDQVVNFQEYVTFLGALAMIYND 323
D+N DQ ++F+EY FL L M YND
Sbjct: 61 DKNSDQEIDFKEYSVFLTTLCMAYND 86
>ref|NP_777020.1| protein S100-A4 [Bos taurus].
Length = 101
Score = 92.8 bits (229), Expect = 2e-19
Identities = 46/92 (50%), Positives = 64/92 (69%), Gaps = 2/92 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
MA PL++A+ ++V+ FHKYSG+EGDK L+KSELKEL+ +EL +G + + KLM
Sbjct: 1 MAYPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDETAFQKLMS 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYNDVLRG 335
+LD NKD V+FQEY FL +AM+ N+ G
Sbjct: 61 NLDCNKDNEVDFQEYCVFLSCIAMMCNEFFEG 92
>ref|NP_001179595.1| protein S100-Z [Bos taurus].
Length = 99
Score = 72.8 bits (177), Expect = 2e-13
Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELTIGAKLQ-DAEIA-KLMD 239
M L+ A+ +++ FH+YS REGD+ L+K ELK L+Q+ELT Q D E+ K+M
Sbjct: 1 MPTQLEIAMNIMIRTFHRYSCREGDRFKLNKGELKMLLQRELTEFLSCQKDPELVDKIMQ 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYND 323
DLD NKD V+F E+V + AL + ND
Sbjct: 61 DLDANKDNEVDFNEFVVMVAALTVACND 88
>ref|NP_001092512.1| S100 calcium binding protein A1 [Bos taurus].
Length = 94
Score = 72.8 bits (177), Expect = 2e-13
Identities = 39/88 (44%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
M L+ A+ L+ +FH +SG+EGDK LSK ELKEL+Q EL+ + A+ + K+M
Sbjct: 1 MGSELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDADAVDKVMK 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYND 323
+LD N D V+FQEYV + AL + N+
Sbjct: 61 ELDENGDGEVDFQEYVVLVAALTVACNN 88
>ref|XP_002690462.1| PREDICTED: S100 calcium binding protein, zeta-like [Bos taurus].
Length = 99
Score = 72.8 bits (177), Expect = 2e-13
Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELTIGAKLQ-DAEIA-KLMD 239
M L+ A+ +++ FH+YS REGD+ L+K ELK L+Q+ELT Q D E+ K+M
Sbjct: 1 MPTQLEIAMNIMIRTFHRYSCREGDRFKLNKGELKMLLQRELTEFLSCQKDPELVDKIMQ 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYND 323
DLD NKD V+F E+V + AL + ND
Sbjct: 61 DLDANKDNEVDFNEFVVMVAALTVACND 88
>ref|XP_001253745.1| PREDICTED: S100 calcium binding protein A1 isoform 2 [Bos taurus].
Length = 94
Score = 72.8 bits (177), Expect = 2e-13
Identities = 39/88 (44%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
M L+ A+ L+ +FH +SG+EGDK LSK ELKEL+Q EL+ + A+ + K+M
Sbjct: 1 MGSELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDADAVDKVMK 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYND 323
+LD N D V+FQEYV + AL + N+
Sbjct: 61 ELDENGDGEVDFQEYVVLVAALTVACNN 88
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 16,593,825
Number of extensions: 462688
Number of successful extensions: 1450
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 1422
Number of HSP's successfully gapped: 25
Length of query: 207
Length of database: 17,681,374
Length adjustment: 97
Effective length of query: 110
Effective length of database: 14,471,838
Effective search space: 1591902180
Effective search space used: 1591902180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003283
(621 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537268.2| PREDICTED: similar to Calcyclin (Prolactin rece... 168 3e-42
Alignment gi|XP_537267.2| PREDICTED: similar to S100 calcium-binding prot... 99 4e-21
Alignment gi|NP_001003161.1| protein S100-A4 [Canis lupus familiaris]. 91 6e-19
Alignment gi|XP_855158.1| PREDICTED: similar to S100 calcium-binding prot... 91 6e-19
Alignment gi|XP_547582.1| PREDICTED: similar to S100 calcium binding prot... 71 7e-13
Alignment gi|XP_537265.1| PREDICTED: similar to S-100 protein, alpha chai... 71 9e-13
Alignment gi|XP_852663.1| PREDICTED: similar to S-100 protein, alpha chai... 71 9e-13
Alignment gi|XP_852856.1| PREDICTED: similar to S-100P protein [Canis fam... 64 8e-11
Alignment gi|XP_533061.1| PREDICTED: similar to Calgizzarin (S100 calcium... 55 6e-08
Alignment gi|XP_547585.2| PREDICTED: similar to Calgranulin B (Migration ... 54 8e-08
>ref|XP_537268.2| PREDICTED: similar to Calcyclin (Prolactin receptor associated
protein) (PRA) (Growth factor-inducible protein 2A9)
(S100 calcium-binding protein A6) (MLN 4) [Canis
familiaris].
Length = 90
Score = 168 bits (426), Expect = 3e-42
Identities = 83/90 (92%), Positives = 87/90 (96%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELTIGAKLQDAEIAKLMDDL 245
MACPLDQAIGLLVAIFHKYSG+EGDKNTLSK ELKELIQKELTIG KLQDA+IAKLMDDL
Sbjct: 1 MACPLDQAIGLLVAIFHKYSGKEGDKNTLSKKELKELIQKELTIGPKLQDADIAKLMDDL 60
Query: 246 DRNKDQVVNFQEYVTFLGALAMIYNDVLRG 335
DRNKDQVVNFQEYVTFLGALA+IYND L+G
Sbjct: 61 DRNKDQVVNFQEYVTFLGALALIYNDALKG 90
>ref|XP_537267.2| PREDICTED: similar to S100 calcium-binding protein A5 (S-100D
protein) [Canis familiaris].
Length = 93
Score = 98.6 bits (244), Expect = 4e-21
Identities = 47/86 (54%), Positives = 63/86 (73%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELTIGAKLQDAEIAKLMDDL 245
M PL++A+ +V+ FHKYSGREG K TLS+ ELKELI+KEL +G K++++ I LM L
Sbjct: 1 METPLEKALTTMVSTFHKYSGREGSKLTLSRKELKELIKKELCLGEKMKESGIDDLMRTL 60
Query: 246 DRNKDQVVNFQEYVTFLGALAMIYND 323
D+N DQ ++F+EY FL L M YND
Sbjct: 61 DKNSDQEIDFKEYTVFLTTLCMAYND 86
>ref|NP_001003161.1| protein S100-A4 [Canis lupus familiaris].
Length = 101
Score = 91.3 bits (225), Expect = 6e-19
Identities = 44/92 (47%), Positives = 64/92 (69%), Gaps = 2/92 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
M PL++A+ ++V+ FHKYSG+EGDK L++SELKEL+ +EL +G + +A KLM
Sbjct: 1 MTFPLEKALDVMVSTFHKYSGKEGDKFKLNRSELKELLMRELPSFLGKRTDEAAFQKLMS 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYNDVLRG 335
+LD N+D V+FQEY FL +AM+ N+ G
Sbjct: 61 NLDSNRDNEVDFQEYCVFLSCVAMMCNEFFEG 92
>ref|XP_855158.1| PREDICTED: similar to S100 calcium-binding protein A2 (S-100L
protein) (CAN19) [Canis familiaris].
Length = 97
Score = 91.3 bits (225), Expect = 6e-19
Identities = 44/88 (50%), Positives = 63/88 (71%), Gaps = 2/88 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
M+ PL+QA+ ++V+ FHKYSG+EGDK LSK+E+K L+Q EL +G K+ + + KLM
Sbjct: 1 MSSPLEQALAVMVSTFHKYSGQEGDKFKLSKAEMKTLLQNELPSFVGEKVDEEGLKKLMG 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYND 323
+LD N DQ V+FQEY FL + ++ ND
Sbjct: 61 NLDENSDQQVDFQEYAVFLALVTIMCND 88
>ref|XP_547582.1| PREDICTED: similar to S100 calcium binding protein A3 [Canis
familiaris].
Length = 101
Score = 71.2 bits (173), Expect = 7e-13
Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
MA PL+QA+ +V F +YSGR GDK+ L ++ELKEL+QKEL +L++ + K M
Sbjct: 1 MARPLEQAVAAIVCTFQEYSGRCGDKHKLCQAELKELLQKELPTWTPTELRECDYNKFMS 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYNDVLRG 335
LD N+D V+F EY+ L L ++ +G
Sbjct: 61 VLDANQDCEVDFVEYMRSLACLCTYCHEYFKG 92
>ref|XP_537265.1| PREDICTED: similar to S-100 protein, alpha chain (S100
calcium-binding protein A1) isoform 1 [Canis
familiaris].
Length = 94
Score = 70.9 bits (172), Expect = 9e-13
Identities = 38/88 (43%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
M L+ A+ L+ +FH +SG+EG+K LSK ELKEL+Q EL+ + A+ + K+M
Sbjct: 1 MGSELETAMETLINVFHAHSGKEGNKYKLSKKELKELLQTELSGFLDAQKDADAVDKVMK 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYND 323
+LD N D V+FQEYV + AL + N+
Sbjct: 61 ELDENGDGEVDFQEYVVLVAALTVACNN 88
>ref|XP_852663.1| PREDICTED: similar to S-100 protein, alpha chain (S100
calcium-binding protein A1) isoform 2 [Canis
familiaris].
Length = 94
Score = 70.9 bits (172), Expect = 9e-13
Identities = 38/88 (43%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
M L+ A+ L+ +FH +SG+EG+K LSK ELKEL+Q EL+ + A+ + K+M
Sbjct: 1 MGSELETAMETLINVFHAHSGKEGNKYKLSKKELKELLQTELSGFLDAQKDADAVDKVMK 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYND 323
+LD N D V+FQEYV + AL + N+
Sbjct: 61 ELDENGDGEVDFQEYVVLVAALTVACNN 88
>ref|XP_852856.1| PREDICTED: similar to S-100P protein [Canis familiaris].
Length = 197
Score = 64.3 bits (155), Expect = 8e-11
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Frame = +3
Query: 78 LDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMDDLDR 251
L+ A+G+++++F +Y+G EG K +L+K ELK L++KEL + K + KL+ DLD
Sbjct: 106 LETAMGMIISVFARYAGVEGSKQSLTKGELKVLMEKELPGFLQTKRDRDSVDKLLKDLDA 165
Query: 252 NKDQVVNFQEYVTFLGAL 305
N D V+F E++ F+ L
Sbjct: 166 NGDAEVDFSEFIVFVATL 183
>ref|XP_533061.1| PREDICTED: similar to Calgizzarin (S100 calcium-binding protein
A11) (S100C protein) (MLN 70) [Canis familiaris].
Length = 103
Score = 54.7 bits (130), Expect = 6e-08
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Frame = +3
Query: 81 DQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELTIGAKLQ--DAEIAKLMDDLDRN 254
++ I L+A+F K++G+EG+ TLSK+E + EL K Q + ++M LD N
Sbjct: 11 ERCIESLIAVFQKFAGKEGNNCTLSKTEFLTFMNTELAAFTKNQKDPGVLDRMMKKLDLN 70
Query: 255 KDQVVNFQEYVTFLGALAMIYND 323
D ++FQE++ +G +A+ +D
Sbjct: 71 SDGQLDFQEFLNLIGGMAIACHD 93
>ref|XP_547585.2| PREDICTED: similar to Calgranulin B (Migration inhibitory
factor-related protein 14) (MRP-14) (P14) (Leukocyte L1
complex heavy chain) (S100 calcium-binding protein A9)
(Calprotectin L1H subunit) [Canis familiaris].
Length = 352
Score = 54.3 bits (129), Expect = 8e-08
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Frame = +3
Query: 78 LDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELTIGAKLQ---DAEIAKLMDDLD 248
L+ +I ++ IFH+YS R + L++ E+K+L++KEL K Q D I K+M+DLD
Sbjct: 230 LECSIETIINIFHQYSVRLEHPDKLNQKEMKQLVKKELPNFLKKQKKNDNAINKIMEDLD 289
Query: 249 RNKDQVVNFQEYVTFLGALAM 311
N D+ +NF+E+ + L +
Sbjct: 290 TNGDKELNFEEFSILVARLTV 310
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 16,966,926
Number of extensions: 390789
Number of successful extensions: 1450
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 1435
Number of HSP's successfully gapped: 14
Length of query: 207
Length of database: 18,874,504
Length adjustment: 98
Effective length of query: 109
Effective length of database: 15,607,576
Effective search space: 1701225784
Effective search space used: 1701225784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003283
(621 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055439.1| protein S100-A6 [Homo sapiens]. 163 1e-40
Alignment gi|NP_062427.1| protein S100-A4 [Homo sapiens]. 98 5e-21
Alignment gi|NP_002952.1| protein S100-A4 [Homo sapiens]. 98 5e-21
Alignment gi|NP_002953.2| protein S100-A5 [Homo sapiens]. 93 2e-19
Alignment gi|NP_005969.1| protein S100-A2 [Homo sapiens]. 89 3e-18
Alignment gi|NP_006262.1| protein S100-A1 [Homo sapiens]. 72 3e-13
Alignment gi|NP_570128.2| protein S100-Z [Homo sapiens]. 70 1e-12
Alignment gi|NP_002951.1| protein S100-A3 [Homo sapiens]. 69 2e-12
Alignment gi|NP_006263.1| protein S100-B [Homo sapiens]. 66 3e-11
Alignment gi|NP_005971.1| protein S100-P [Homo sapiens]. 64 8e-11
>ref|NP_055439.1| protein S100-A6 [Homo sapiens].
Length = 90
Score = 163 bits (412), Expect = 1e-40
Identities = 80/90 (88%), Positives = 87/90 (96%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELTIGAKLQDAEIAKLMDDL 245
MACPLDQAIGLLVAIFHKYSGREGDK+TLSK ELKELIQKELTIG+KLQDAEIA+LM+DL
Sbjct: 1 MACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDL 60
Query: 246 DRNKDQVVNFQEYVTFLGALAMIYNDVLRG 335
DRNKDQ VNFQEYVTFLGALA+IYN+ L+G
Sbjct: 61 DRNKDQEVNFQEYVTFLGALALIYNEALKG 90
>ref|NP_062427.1| protein S100-A4 [Homo sapiens].
Length = 101
Score = 98.2 bits (243), Expect = 5e-21
Identities = 47/92 (51%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
MACPL++A+ ++V+ FHKYSG+EGDK L+KSELKEL+ +EL +G + +A KLM
Sbjct: 1 MACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYNDVLRG 335
+LD N+D V+FQEY FL +AM+ N+ G
Sbjct: 61 NLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEG 92
>ref|NP_002952.1| protein S100-A4 [Homo sapiens].
Length = 101
Score = 98.2 bits (243), Expect = 5e-21
Identities = 47/92 (51%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
MACPL++A+ ++V+ FHKYSG+EGDK L+KSELKEL+ +EL +G + +A KLM
Sbjct: 1 MACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYNDVLRG 335
+LD N+D V+FQEY FL +AM+ N+ G
Sbjct: 61 NLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEG 92
>ref|NP_002953.2| protein S100-A5 [Homo sapiens].
Length = 92
Score = 92.8 bits (229), Expect = 2e-19
Identities = 46/86 (53%), Positives = 62/86 (72%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELTIGAKLQDAEIAKLMDDL 245
M PL++A+ +V FHKYSGREG K TLS+ ELKELI+KEL +G +++++ I LM L
Sbjct: 1 METPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLG-EMKESSIDDLMKSL 59
Query: 246 DRNKDQVVNFQEYVTFLGALAMIYND 323
D+N DQ ++F+EY FL L M YND
Sbjct: 60 DKNSDQEIDFKEYSVFLTMLCMAYND 85
>ref|NP_005969.1| protein S100-A2 [Homo sapiens].
Length = 97
Score = 89.0 bits (219), Expect = 3e-18
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 2/92 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
M L+QA+ +LV FHKYS +EGDK LSK E+KEL+ KEL +G K+ + + KLM
Sbjct: 1 MCSSLEQALAVLVTTFHKYSCQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYNDVLRG 335
LD N DQ V+FQEY FL + ++ ND +G
Sbjct: 61 SLDENSDQQVDFQEYAVFLALITVMCNDFFQG 92
>ref|NP_006262.1| protein S100-A1 [Homo sapiens].
Length = 94
Score = 72.4 bits (176), Expect = 3e-13
Identities = 39/88 (44%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
M L+ A+ L+ +FH +SG+EGDK LSK ELKEL+Q EL+ + A+ + K+M
Sbjct: 1 MGSELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDVDAVDKVMK 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYND 323
+LD N D V+FQEYV + AL + N+
Sbjct: 61 ELDENGDGEVDFQEYVVLVAALTVACNN 88
>ref|NP_570128.2| protein S100-Z [Homo sapiens].
Length = 99
Score = 70.5 bits (171), Expect = 1e-12
Identities = 36/88 (40%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
M L+ A+ ++ IFH+YSG+E + LSK ELK L+Q+ELT + + + + K++
Sbjct: 1 MPTQLEMAMDTMIRIFHRYSGKERKRFKLSKGELKLLLQRELTEFLSCQKETQLVDKIVQ 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYND 323
DLD NKD V+F E+V + AL + ND
Sbjct: 61 DLDANKDNEVDFNEFVVMVAALTVACND 88
>ref|NP_002951.1| protein S100-A3 [Homo sapiens].
Length = 101
Score = 69.3 bits (168), Expect = 2e-12
Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
MA PL+QA+ +V F +Y+GR GDK L ++ELKEL+QKEL + ++ + K M
Sbjct: 1 MARPLEQAVAAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMS 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYNDVLR 332
LD NKD V+F EYV L L + ++ +
Sbjct: 61 VLDTNKDCEVDFVEYVRSLACLCLYCHEYFK 91
>ref|NP_006263.1| protein S100-B [Homo sapiens].
Length = 92
Score = 65.9 bits (159), Expect = 3e-11
Identities = 34/75 (45%), Positives = 54/75 (72%), Gaps = 2/75 (2%)
Frame = +3
Query: 78 LDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT-IGAKLQDAEIA-KLMDDLDR 251
L++A+ L+ +FH+YSGREGDK+ L KSELKELI EL+ ++++ E+ K+M+ LD
Sbjct: 4 LEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDN 63
Query: 252 NKDQVVNFQEYVTFL 296
+ D +FQE++ F+
Sbjct: 64 DGDGECDFQEFMAFV 78
>ref|NP_005971.1| protein S100-P [Homo sapiens].
Length = 95
Score = 64.3 bits (155), Expect = 8e-11
Identities = 34/79 (43%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Frame = +3
Query: 78 LDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKEL---TIGAKLQDAEIAKLMDDLD 248
L+ A+G+++ +F +YSG EG TL+K ELK L++KEL K +DA + KL+ DLD
Sbjct: 4 LETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDA-VDKLLKDLD 62
Query: 249 RNKDQVVNFQEYVTFLGAL 305
N D V+F E++ F+ A+
Sbjct: 63 ANGDAQVDFSEFIVFVAAI 81
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 16,484,029
Number of extensions: 369454
Number of successful extensions: 1281
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 1263
Number of HSP's successfully gapped: 15
Length of query: 207
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 109
Effective length of database: 15,066,692
Effective search space: 1642269428
Effective search space used: 1642269428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003283
(621 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035443.1| protein S100-A6 [Mus musculus]. 159 2e-39
Alignment gi|NP_035442.1| protein S100-A5 [Mus musculus]. 96 3e-20
Alignment gi|NP_035441.1| protein S100-A4 [Mus musculus]. 92 4e-19
Alignment gi|NP_001074628.1| protein S100-Z [Mus musculus]. 72 3e-13
Alignment gi|NP_035439.1| protein S100-A1 [Mus musculus]. 70 1e-12
Alignment gi|NP_035440.1| protein S100-A3 [Mus musculus]. 69 4e-12
Alignment gi|NP_033141.1| protein S100-B [Mus musculus]. 66 2e-11
Alignment gi|NP_001182689.1| predicted gene, EG628324 [Mus musculus]. 59 2e-09
Alignment gi|XP_003084639.1| PREDICTED: protein S100-A11-like [Mus muscul... 56 2e-08
Alignment gi|XP_003086437.1| PREDICTED: protein S100-A11-like isoform 2 [... 56 2e-08
>ref|NP_035443.1| protein S100-A6 [Mus musculus].
Length = 89
Score = 159 bits (402), Expect = 2e-39
Identities = 78/89 (87%), Positives = 85/89 (95%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELTIGAKLQDAEIAKLMDDL 245
MACPLDQAIGLLVAIFHKYSG+EGDK+TLSK ELKELIQKELTIG+KLQDAEIA+LMDDL
Sbjct: 1 MACPLDQAIGLLVAIFHKYSGKEGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMDDL 60
Query: 246 DRNKDQVVNFQEYVTFLGALAMIYNDVLR 332
DRNKDQ VNFQEYV FLGALA+IYN+ L+
Sbjct: 61 DRNKDQEVNFQEYVAFLGALALIYNEALK 89
>ref|NP_035442.1| protein S100-A5 [Mus musculus].
Length = 93
Score = 95.5 bits (236), Expect = 3e-20
Identities = 45/86 (52%), Positives = 61/86 (70%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELTIGAKLQDAEIAKLMDDL 245
M PL++A+ +V FHKYSGREG K TLS+ ELKELI+ EL++ K++++ I LM L
Sbjct: 1 METPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKTELSLAEKMKESSIDNLMKSL 60
Query: 246 DRNKDQVVNFQEYVTFLGALAMIYND 323
D+N DQ ++F+EY FL L M YND
Sbjct: 61 DKNSDQEIDFKEYSVFLTTLCMAYND 86
>ref|NP_035441.1| protein S100-A4 [Mus musculus].
Length = 101
Score = 91.7 bits (226), Expect = 4e-19
Identities = 44/92 (47%), Positives = 65/92 (70%), Gaps = 2/92 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
MA PL++A+ ++V+ FHKYSG+EGDK L+K+ELKEL+ +EL +G + +A K+M
Sbjct: 1 MARPLEEALDVIVSTFHKYSGKEGDKFKLNKTELKELLTRELPSFLGKRTDEAAFQKVMS 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYNDVLRG 335
+LD N+D V+FQEY FL +AM+ N+ G
Sbjct: 61 NLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEG 92
>ref|NP_001074628.1| protein S100-Z [Mus musculus].
Length = 99
Score = 72.0 bits (175), Expect = 3e-13
Identities = 37/88 (42%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
M L+ A+ ++ IFH+YS +EGD+ L+K ELK L+Q+ELT + + + K+M
Sbjct: 1 MPTQLEMAMDTMIRIFHRYSCKEGDRFKLNKGELKMLLQRELTEFLTCQKDPQLVDKIMQ 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYND 323
DLD NKD V+F E+V + AL + ND
Sbjct: 61 DLDANKDNEVDFNEFVVMVAALTVACND 88
>ref|NP_035439.1| protein S100-A1 [Mus musculus].
Length = 94
Score = 70.1 bits (170), Expect = 1e-12
Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELTIGAKLQ-DAE-IAKLMD 239
M L+ A+ L+ +FH +SG+EGDK LSK ELK+L+Q EL+ +Q DA+ + K+M
Sbjct: 1 MGSELESAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSGFLDVQKDADAVDKVMK 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYND 323
+LD N D V+F+EYV + AL + N+
Sbjct: 61 ELDENGDGEVDFKEYVVLVAALTVACNN 88
>ref|NP_035440.1| protein S100-A3 [Mus musculus].
Length = 101
Score = 68.6 bits (166), Expect = 4e-12
Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
M PL+QA+ +V F +Y+GR GDK + +SELKEL+QKEL ++ ++ + K M
Sbjct: 1 MTRPLEQAVAAIVCTFQEYAGRCGDKYKICQSELKELLQKELPTWTPSEFRECDYNKFMS 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYNDVLR 332
LD NKD V+F EYV L +L + ++ +
Sbjct: 61 VLDTNKDCEVDFGEYVRSLASLCLYCHEYFK 91
>ref|NP_033141.1| protein S100-B [Mus musculus].
Length = 92
Score = 65.9 bits (159), Expect = 2e-11
Identities = 34/75 (45%), Positives = 54/75 (72%), Gaps = 2/75 (2%)
Frame = +3
Query: 78 LDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT-IGAKLQDAEIA-KLMDDLDR 251
L++A+ L+ +FH+YSGREGDK+ L KSELKELI EL+ ++++ E+ K+M+ LD
Sbjct: 4 LEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDE 63
Query: 252 NKDQVVNFQEYVTFL 296
+ D +FQE++ F+
Sbjct: 64 DGDGECDFQEFMAFV 78
>ref|NP_001182689.1| predicted gene, EG628324 [Mus musculus].
Length = 104
Score = 59.3 bits (142), Expect = 2e-09
Identities = 30/81 (37%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Frame = +3
Query: 99 LVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMDDLDRNKDQVVN 272
+V FHKY+ +E ++ +K E+KEL++KEL +G + D ++ K M++LD++ DQ V+
Sbjct: 1 MVYTFHKYASQEDERLKHNKGEIKELLRKELLSYVGDNVDDEKVKKEMNNLDKDSDQQVD 60
Query: 273 FQEYVTFLGALAMIYNDVLRG 335
F+ Y L A+ +N+ L G
Sbjct: 61 FRMYALVLVDSAIWFNNFLEG 81
>ref|XP_003084639.1| PREDICTED: protein S100-A11-like [Mus musculus].
Length = 96
Score = 55.8 bits (133), Expect = 2e-08
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELTIGAKLQ--DAEIAKLMD 239
M ++ I L+A+F KYSG++G+ LSK+E + EL K Q + ++M
Sbjct: 1 MPTETERCIESLIAVFQKYSGKDGNNTQLSKTEFLSFMNTELAAFTKNQKDPGVLDRMMK 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYND 323
LD N D ++FQE++ +G+LA+ +D
Sbjct: 61 KLDLNCDGQLDFQEFLNLIGSLAIACHD 88
>ref|XP_003086437.1| PREDICTED: protein S100-A11-like isoform 2 [Mus musculus].
Length = 96
Score = 55.8 bits (133), Expect = 2e-08
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELTIGAKLQ--DAEIAKLMD 239
M ++ I L+A+F KYSG++G+ LSK+E + EL K Q + ++M
Sbjct: 1 MPTETERCIESLIAVFQKYSGKDGNNTQLSKTEFLSFMNTELAAFTKNQKDPGVLDRMMK 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYND 323
LD N D ++FQE++ +G+LA+ +D
Sbjct: 61 KLDLNCDGQLDFQEFLNLIGSLAIACHD 88
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 13,919,026
Number of extensions: 309390
Number of successful extensions: 1080
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 1069
Number of HSP's successfully gapped: 20
Length of query: 207
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 110
Effective length of database: 12,704,067
Effective search space: 1397447370
Effective search space used: 1397447370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003283
(621 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038022.1| protein S100-A6 [Sus scrofa]. 176 7e-45
Alignment gi|XP_003360610.1| PREDICTED: protein S100-A2-like [Sus scrofa]. 99 2e-21
Alignment gi|XP_001929591.1| PREDICTED: protein S100-A2-like isoform 1 [S... 99 2e-21
Alignment gi|XP_001929598.1| PREDICTED: protein S100-A4-like isoform 2 [S... 94 6e-20
Alignment gi|XP_001929595.1| PREDICTED: protein S100-A4-like isoform 1 [S... 94 6e-20
Alignment gi|XP_003355204.1| PREDICTED: protein S100-A5-like [Sus scrofa]. 92 2e-19
Alignment gi|XP_003355203.1| PREDICTED: protein S100-A4-like [Sus scrofa]. 84 8e-17
Alignment gi|XP_003360609.1| PREDICTED: protein S100-A3-like [Sus scrofa]. 67 6e-12
Alignment gi|XP_001927371.2| PREDICTED: protein S100-A3-like [Sus scrofa]. 67 6e-12
Alignment gi|XP_003123762.1| PREDICTED: protein S100-Z-like [Sus scrofa]. 67 6e-12
>ref|NP_001038022.1| protein S100-A6 [Sus scrofa].
Length = 90
Score = 176 bits (447), Expect = 7e-45
Identities = 89/90 (98%), Positives = 90/90 (100%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELTIGAKLQDAEIAKLMDDL 245
MACPLDQAIGLLVAIFHKYSG+EGDKNTLSKSELKELIQKELTIGAKLQDAEIAKLMDDL
Sbjct: 1 MACPLDQAIGLLVAIFHKYSGQEGDKNTLSKSELKELIQKELTIGAKLQDAEIAKLMDDL 60
Query: 246 DRNKDQVVNFQEYVTFLGALAMIYNDVLRG 335
DRNKDQVVNFQEYVTFLGALAMIYNDVLRG
Sbjct: 61 DRNKDQVVNFQEYVTFLGALAMIYNDVLRG 90
>ref|XP_003360610.1| PREDICTED: protein S100-A2-like [Sus scrofa].
Length = 97
Score = 99.0 bits (245), Expect = 2e-21
Identities = 48/92 (52%), Positives = 65/92 (70%), Gaps = 2/92 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
M+ PL+QA+ ++VA FHKYSG+EGDK LSK E+KEL+ KEL +G K+ + + KLM
Sbjct: 1 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYNDVLRG 335
DLD N DQ V+FQEY FL + ++ ND +G
Sbjct: 61 DLDENSDQQVDFQEYAVFLALITIMCNDFFQG 92
>ref|XP_001929591.1| PREDICTED: protein S100-A2-like isoform 1 [Sus scrofa].
Length = 97
Score = 99.0 bits (245), Expect = 2e-21
Identities = 48/92 (52%), Positives = 65/92 (70%), Gaps = 2/92 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
M+ PL+QA+ ++VA FHKYSG+EGDK LSK E+KEL+ KEL +G K+ + + KLM
Sbjct: 1 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYNDVLRG 335
DLD N DQ V+FQEY FL + ++ ND +G
Sbjct: 61 DLDENSDQQVDFQEYAVFLALITIMCNDFFQG 92
>ref|XP_001929598.1| PREDICTED: protein S100-A4-like isoform 2 [Sus scrofa].
Length = 101
Score = 94.0 bits (232), Expect = 6e-20
Identities = 46/92 (50%), Positives = 65/92 (70%), Gaps = 2/92 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
MA PL++A+ ++V+ FHKYSG+EGDK L+KSELKEL+ +EL +G + +A KLM
Sbjct: 1 MAYPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYNDVLRG 335
+LD N+D V+FQEY FL +AM+ N+ G
Sbjct: 61 NLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEG 92
>ref|XP_001929595.1| PREDICTED: protein S100-A4-like isoform 1 [Sus scrofa].
Length = 101
Score = 94.0 bits (232), Expect = 6e-20
Identities = 46/92 (50%), Positives = 65/92 (70%), Gaps = 2/92 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
MA PL++A+ ++V+ FHKYSG+EGDK L+KSELKEL+ +EL +G + +A KLM
Sbjct: 1 MAYPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYNDVLRG 335
+LD N+D V+FQEY FL +AM+ N+ G
Sbjct: 61 NLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEG 92
>ref|XP_003355204.1| PREDICTED: protein S100-A5-like [Sus scrofa].
Length = 92
Score = 92.4 bits (228), Expect = 2e-19
Identities = 45/86 (52%), Positives = 62/86 (72%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELTIGAKLQDAEIAKLMDDL 245
M PL++A+ +V FHKYSGREG K TLS+ ELKELI+KEL +G +++++ + LM L
Sbjct: 1 METPLEKALTTMVTTFHKYSGREGSKLTLSRRELKELIKKELCLG-EMKESSVDDLMKSL 59
Query: 246 DRNKDQVVNFQEYVTFLGALAMIYND 323
D+N DQ ++F+EY FL L M YND
Sbjct: 60 DKNSDQEIDFKEYSVFLTTLCMAYND 85
>ref|XP_003355203.1| PREDICTED: protein S100-A4-like [Sus scrofa].
Length = 94
Score = 83.6 bits (205), Expect = 8e-17
Identities = 43/88 (48%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
MA PL++A+ ++V+ FHKYSG+EGDK L+KSELKEL+ +EL +GA+ + K+M
Sbjct: 1 MAYPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGAQKDADAVDKVMK 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYND 323
+LD N D V+FQEYV + AL + N+
Sbjct: 61 ELDENGDGEVDFQEYVVLVAALTVACNN 88
>ref|XP_003360609.1| PREDICTED: protein S100-A3-like [Sus scrofa].
Length = 101
Score = 67.4 bits (163), Expect = 6e-12
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
MA PL+Q + ++ F +YSGR GDK+ L ++ELKEL+QKEL +L++ + K M
Sbjct: 1 MASPLEQGLAAVLCTFQEYSGRCGDKHKLCQAELKELLQKELPTWTPTELRECDYNKFMS 60
Query: 240 DLDRNKDQVVNFQEYVTFLGAL 305
LD +KD V+F EYV L L
Sbjct: 61 VLDSDKDGEVDFVEYVRSLACL 82
>ref|XP_001927371.2| PREDICTED: protein S100-A3-like [Sus scrofa].
Length = 101
Score = 67.4 bits (163), Expect = 6e-12
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELT--IGAKLQDAEIAKLMD 239
MA PL+Q + ++ F +YSGR GDK+ L ++ELKEL+QKEL +L++ + K M
Sbjct: 1 MASPLEQGLAAVLCTFQEYSGRCGDKHKLCQAELKELLQKELPTWTPTELRECDYNKFMS 60
Query: 240 DLDRNKDQVVNFQEYVTFLGAL 305
LD +KD V+F EYV L L
Sbjct: 61 VLDSDKDGEVDFVEYVRSLACL 82
>ref|XP_003123762.1| PREDICTED: protein S100-Z-like [Sus scrofa].
Length = 99
Score = 67.4 bits (163), Expect = 6e-12
Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Frame = +3
Query: 66 MACPLDQAIGLLVAIFHKYSGREGDKNTLSKSELKELIQKELTIGAKLQ-DAEIA-KLMD 239
M L+ A+ +++ F +YS +EGD+ L+K ELK L+Q+ELT Q D E+ K+M
Sbjct: 1 MPTQLEIAMDIMIRTFPRYSCKEGDRFKLNKGELKMLLQRELTDFLSCQKDPELVDKIMQ 60
Query: 240 DLDRNKDQVVNFQEYVTFLGALAMIYND 323
DLD NKD V+F E+V + AL + ND
Sbjct: 61 DLDANKDNEVDFNEFVVMVAALTVACND 88
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 11,568,128
Number of extensions: 432553
Number of successful extensions: 916
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 897
Number of HSP's successfully gapped: 25
Length of query: 207
Length of database: 11,343,932
Length adjustment: 94
Effective length of query: 113
Effective length of database: 9,003,614
Effective search space: 1017408382
Effective search space used: 1017408382
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003283
(621 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118413.1| Sus scrofa unplaced genomic scaffold ChrUScaf185 450 e-124
>gb|JH118413.1| Sus scrofa unplaced genomic scaffold ChrUScaf185
Length = 34367
Score = 450 bits (227), Expect = e-124
Identities = 227/227 (100%)
Strand = Plus / Minus
Query: 203 gaagctgcaggatgctgaaatcgcaaagctgatggatgacctggaccggaacaaggacca 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7487 gaagctgcaggatgctgaaatcgcaaagctgatggatgacctggaccggaacaaggacca 7428
Query: 263 ggtggtgaacttccaagaatatgtcaccttcctgggggccttggctatgatctacaacga 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7427 ggtggtgaacttccaagaatatgtcaccttcctgggggccttggctatgatctacaacga 7368
Query: 323 tgtcctccggggctgaacataaattgagacggtggagacaccctttagctggcctgttga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7367 tgtcctccggggctgaacataaattgagacggtggagacaccctttagctggcctgttga 7308
Query: 383 tctagtggtgggtaactgtacaataaattttttttgttgttaaatct 429
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7307 tctagtggtgggtaactgtacaataaattttttttgttgttaaatct 7261
Score = 131 bits (66), Expect = 5e-28
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 90 attggcctcctggtggccatcttccacaagtactccggccgggagggtgacaaaaacacc 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8052 attggcctcctggtggccatcttccacaagtactccggccgggagggtgacaaaaacacc 7993
Query: 150 ctgagc 155
||||||
Sbjct: 7992 ctgagc 7987
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,123,395
Number of extensions: 552
Number of successful extensions: 552
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 552
Number of HSP's successfully gapped: 2
Length of query: 621
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 600
Effective length of database: 2,808,413,156
Effective search space: 1685047893600
Effective search space used: 1685047893600
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)