Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003294
(1038 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069134.1| microspherule protein 1 [Bos taurus]. 407 e-114
>ref|NP_001069134.1| microspherule protein 1 [Bos taurus].
Length = 462
Score = 407 bits (1047), Expect(2) = e-114
Identities = 218/275 (79%), Positives = 221/275 (80%)
Frame = +3
Query: 210 MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPXXXXXXXXXXXXXXDDE 389
MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIP DDE
Sbjct: 1 MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDE 60
Query: 390 LVESSLAKSSTRAKGASGVEPGRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLTKRVK 569
LVESSLAKSSTRAKGASGVEPGRC GLTKRVK
Sbjct: 61 LVESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKTPSTPVPPSPAPAPGLTKRVK 120
Query: 570 KSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLY 749
KSKQPLQVTKDLGRWKPADDLLLI+AVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLY
Sbjct: 121 KSKQPLQVTKDLGRWKPADDLLLISAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLY 180
Query: 750 DPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQELLHRPPD 929
DPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQ+LLHR PD
Sbjct: 181 DPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPD 240
Query: 930 AFYLARYCXALQAHWQLMKQYYLLXDRQCSRCPGG 1034
AFYLAR ALQAHWQLMKQYYLL D+ P G
Sbjct: 241 AFYLARTAKALQAHWQLMKQYYLLEDQTVQPLPKG 275
Score = 24.3 bits (51), Expect(2) = e-114
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2
Query: 1007 QTVQPLPRGD 1036
QTVQPLP+GD
Sbjct: 267 QTVQPLPKGD 276
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,232,609
Number of extensions: 1237156
Number of successful extensions: 6202
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6161
Number of HSP's successfully gapped: 2
Length of query: 346
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,273,310
Effective search space: 3468414330
Effective search space used: 3468414330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003294
(1038 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850537.1| PREDICTED: similar to Microspherule protein 1 (... 407 e-114
Alignment gi|XP_861763.1| PREDICTED: similar to Microspherule protein 1 (... 407 e-114
Alignment gi|XP_534810.2| PREDICTED: similar to microspherule protein 1 i... 401 e-112
Alignment gi|XP_861703.1| PREDICTED: similar to Microspherule protein 1 (... 400 e-112
Alignment gi|XP_861644.1| PREDICTED: similar to Microspherule protein 1 (... 261 8e-70
Alignment gi|XP_850326.1| PREDICTED: similar to Microspherule protein 1 (... 153 2e-37
>ref|XP_850537.1| PREDICTED: similar to Microspherule protein 1 (58 kDa microspherule
protein) (Cell cycle-regulated factor p78) isoform 2
[Canis familiaris].
Length = 462
Score = 407 bits (1045), Expect(2) = e-114
Identities = 217/275 (78%), Positives = 220/275 (80%)
Frame = +3
Query: 210 MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPXXXXXXXXXXXXXXDDE 389
MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIP DDE
Sbjct: 1 MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDE 60
Query: 390 LVESSLAKSSTRAKGASGVEPGRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLTKRVK 569
LVESSLAKSSTRAKGASGVEPGRC GLTKRVK
Sbjct: 61 LVESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPTPGLTKRVK 120
Query: 570 KSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLY 749
KSKQPLQVTKDLGRWKPADDLLL+NAVLQTNDLT VHLGVKFSCRFTLREVQERWYALLY
Sbjct: 121 KSKQPLQVTKDLGRWKPADDLLLVNAVLQTNDLTFVHLGVKFSCRFTLREVQERWYALLY 180
Query: 750 DPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQELLHRPPD 929
DPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQ+LLHR PD
Sbjct: 181 DPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPD 240
Query: 930 AFYLARYCXALQAHWQLMKQYYLLXDRQCSRCPGG 1034
AFYLAR ALQAHWQLMKQYYLL D+ P G
Sbjct: 241 AFYLARTAKALQAHWQLMKQYYLLEDQTVQPLPKG 275
Score = 24.3 bits (51), Expect(2) = e-114
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2
Query: 1007 QTVQPLPRGD 1036
QTVQPLP+GD
Sbjct: 267 QTVQPLPKGD 276
>ref|XP_861763.1| PREDICTED: similar to Microspherule protein 1 (58 kDa microspherule
protein) (Cell cycle-regulated factor p78) isoform 5
[Canis familiaris].
Length = 294
Score = 407 bits (1045), Expect(2) = e-114
Identities = 217/275 (78%), Positives = 220/275 (80%)
Frame = +3
Query: 210 MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPXXXXXXXXXXXXXXDDE 389
MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIP DDE
Sbjct: 1 MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDE 60
Query: 390 LVESSLAKSSTRAKGASGVEPGRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLTKRVK 569
LVESSLAKSSTRAKGASGVEPGRC GLTKRVK
Sbjct: 61 LVESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPTPGLTKRVK 120
Query: 570 KSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLY 749
KSKQPLQVTKDLGRWKPADDLLL+NAVLQTNDLT VHLGVKFSCRFTLREVQERWYALLY
Sbjct: 121 KSKQPLQVTKDLGRWKPADDLLLVNAVLQTNDLTFVHLGVKFSCRFTLREVQERWYALLY 180
Query: 750 DPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQELLHRPPD 929
DPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQ+LLHR PD
Sbjct: 181 DPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPD 240
Query: 930 AFYLARYCXALQAHWQLMKQYYLLXDRQCSRCPGG 1034
AFYLAR ALQAHWQLMKQYYLL D+ P G
Sbjct: 241 AFYLARTAKALQAHWQLMKQYYLLEDQTVQPLPKG 275
Score = 24.3 bits (51), Expect(2) = e-114
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2
Query: 1007 QTVQPLPRGD 1036
QTVQPLP+GD
Sbjct: 267 QTVQPLPKGD 276
>ref|XP_534810.2| PREDICTED: similar to microspherule protein 1 isoform 2 isoform 1
[Canis familiaris].
Length = 475
Score = 401 bits (1031), Expect(2) = e-112
Identities = 215/276 (77%), Positives = 218/276 (78%)
Frame = +3
Query: 207 RMDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPXXXXXXXXXXXXXXDD 386
R DSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIP DD
Sbjct: 13 RSGPDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDD 72
Query: 387 ELVESSLAKSSTRAKGASGVEPGRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLTKRV 566
ELVESSLAKSSTRAKGASGVEPGRC GLTKRV
Sbjct: 73 ELVESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPTPGLTKRV 132
Query: 567 KKSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALL 746
KKSKQPLQVTKDLGRWKPADDLLL+NAVLQTNDLT VHLGVKFSCRFTLREVQERWYALL
Sbjct: 133 KKSKQPLQVTKDLGRWKPADDLLLVNAVLQTNDLTFVHLGVKFSCRFTLREVQERWYALL 192
Query: 747 YDPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQELLHRPP 926
YDPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQ+LLHR P
Sbjct: 193 YDPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHP 252
Query: 927 DAFYLARYCXALQAHWQLMKQYYLLXDRQCSRCPGG 1034
DAFYLAR ALQAHWQLMKQYYLL D+ P G
Sbjct: 253 DAFYLARTAKALQAHWQLMKQYYLLEDQTVQPLPKG 288
Score = 24.3 bits (51), Expect(2) = e-112
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2
Query: 1007 QTVQPLPRGD 1036
QTVQPLP+GD
Sbjct: 280 QTVQPLPKGD 289
>ref|XP_861703.1| PREDICTED: similar to Microspherule protein 1 (58 kDa microspherule
protein) (Cell cycle-regulated factor p78) isoform 4
[Canis familiaris].
Length = 518
Score = 400 bits (1029), Expect(2) = e-112
Identities = 214/272 (78%), Positives = 217/272 (79%)
Frame = +3
Query: 219 DSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPXXXXXXXXXXXXXXDDELVE 398
DSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIP DDELVE
Sbjct: 60 DSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELVE 119
Query: 399 SSLAKSSTRAKGASGVEPGRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLTKRVKKSK 578
SSLAKSSTRAKGASGVEPGRC GLTKRVKKSK
Sbjct: 120 SSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPTPGLTKRVKKSK 179
Query: 579 QPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLYDPV 758
QPLQVTKDLGRWKPADDLLL+NAVLQTNDLT VHLGVKFSCRFTLREVQERWYALLYDPV
Sbjct: 180 QPLQVTKDLGRWKPADDLLLVNAVLQTNDLTFVHLGVKFSCRFTLREVQERWYALLYDPV 239
Query: 759 ISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQELLHRPPDAFY 938
ISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQ+LLHR PDAFY
Sbjct: 240 ISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPDAFY 299
Query: 939 LARYCXALQAHWQLMKQYYLLXDRQCSRCPGG 1034
LAR ALQAHWQLMKQYYLL D+ P G
Sbjct: 300 LARTAKALQAHWQLMKQYYLLEDQTVQPLPKG 331
Score = 24.3 bits (51), Expect(2) = e-112
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2
Query: 1007 QTVQPLPRGD 1036
QTVQPLP+GD
Sbjct: 323 QTVQPLPKGD 332
>ref|XP_861644.1| PREDICTED: similar to Microspherule protein 1 (58 kDa microspherule
protein) (Cell cycle-regulated factor p78) isoform 3
[Canis familiaris].
Length = 186
Score = 261 bits (667), Expect = 8e-70
Identities = 141/186 (75%), Positives = 142/186 (76%)
Frame = +3
Query: 210 MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPXXXXXXXXXXXXXXDDE 389
MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIP DDE
Sbjct: 1 MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDE 60
Query: 390 LVESSLAKSSTRAKGASGVEPGRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLTKRVK 569
LVESSLAKSSTRAKGASGVEPGRC GLTKRVK
Sbjct: 61 LVESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPTPGLTKRVK 120
Query: 570 KSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLY 749
KSKQPLQVTKDLGRWKPADDLLL+NAVLQTNDLT VHLGVKFSCRFTLREVQERWYALLY
Sbjct: 121 KSKQPLQVTKDLGRWKPADDLLLVNAVLQTNDLTFVHLGVKFSCRFTLREVQERWYALLY 180
Query: 750 DPVISK 767
DPVISK
Sbjct: 181 DPVISK 186
>ref|XP_850326.1| PREDICTED: similar to Microspherule protein 1 (58 kDa microspherule
protein) [Canis familiaris].
Length = 143
Score = 153 bits (387), Expect = 2e-37
Identities = 87/143 (60%), Positives = 91/143 (63%)
Frame = +3
Query: 249 MASGTASRSEDEESLAGQKRASSQALGTIPXXXXXXXXXXXXXXDDELVESSLAKSSTRA 428
MAS TAS SEDEESLAGQK+ASSQALGTIP DDELVESSLAKSST
Sbjct: 1 MASSTASHSEDEESLAGQKQASSQALGTIPKWRSSSRFIKRKKFDDELVESSLAKSSTWV 60
Query: 429 KGASGVEPGRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLTKRVKKSKQPLQVTKDLG 608
KGASGVEPG C GLTK VKKSKQPLQVTK+LG
Sbjct: 61 KGASGVEPGCCSGSEPSSSEKKKVSKTPSTPVPPSPATTPGLTKHVKKSKQPLQVTKNLG 120
Query: 609 RWKPADDLLLINAVLQTNDLTSV 677
WKP DDLL++N VLQTNDLTSV
Sbjct: 121 HWKPVDDLLVVNTVLQTNDLTSV 143
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,059,799
Number of extensions: 1280960
Number of successful extensions: 6318
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6282
Number of HSP's successfully gapped: 10
Length of query: 346
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 242
Effective length of database: 15,407,560
Effective search space: 3728629520
Effective search space used: 3728629520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003294
(1038 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006328.2| microspherule protein 1 isoform 1 [Homo sapiens]. 409 e-115
Alignment gi|NP_001012300.1| microspherule protein 1 isoform 2 [Homo sapi... 404 e-113
>ref|NP_006328.2| microspherule protein 1 isoform 1 [Homo sapiens].
Length = 462
Score = 409 bits (1052), Expect(2) = e-115
Identities = 219/275 (79%), Positives = 221/275 (80%)
Frame = +3
Query: 210 MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPXXXXXXXXXXXXXXDDE 389
MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIP DDE
Sbjct: 1 MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDE 60
Query: 390 LVESSLAKSSTRAKGASGVEPGRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLTKRVK 569
LVESSLAKSSTRAKGASGVEPGRC GLTKRVK
Sbjct: 61 LVESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVK 120
Query: 570 KSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLY 749
KSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLY
Sbjct: 121 KSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLY 180
Query: 750 DPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQELLHRPPD 929
DPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQ+LLHR PD
Sbjct: 181 DPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPD 240
Query: 930 AFYLARYCXALQAHWQLMKQYYLLXDRQCSRCPGG 1034
AFYLAR ALQAHWQLMKQYYLL D+ P G
Sbjct: 241 AFYLARTAKALQAHWQLMKQYYLLEDQTVQPLPKG 275
Score = 24.3 bits (51), Expect(2) = e-115
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2
Query: 1007 QTVQPLPRGD 1036
QTVQPLP+GD
Sbjct: 267 QTVQPLPKGD 276
>ref|NP_001012300.1| microspherule protein 1 isoform 2 [Homo sapiens].
Length = 475
Score = 404 bits (1038), Expect(2) = e-113
Identities = 217/276 (78%), Positives = 219/276 (79%)
Frame = +3
Query: 207 RMDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPXXXXXXXXXXXXXXDD 386
R DSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIP DD
Sbjct: 13 RSGPDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDD 72
Query: 387 ELVESSLAKSSTRAKGASGVEPGRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLTKRV 566
ELVESSLAKSSTRAKGASGVEPGRC GLTKRV
Sbjct: 73 ELVESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRV 132
Query: 567 KKSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALL 746
KKSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALL
Sbjct: 133 KKSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALL 192
Query: 747 YDPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQELLHRPP 926
YDPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQ+LLHR P
Sbjct: 193 YDPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHP 252
Query: 927 DAFYLARYCXALQAHWQLMKQYYLLXDRQCSRCPGG 1034
DAFYLAR ALQAHWQLMKQYYLL D+ P G
Sbjct: 253 DAFYLARTAKALQAHWQLMKQYYLLEDQTVQPLPKG 288
Score = 24.3 bits (51), Expect(2) = e-113
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2
Query: 1007 QTVQPLPRGD 1036
QTVQPLP+GD
Sbjct: 280 QTVQPLPKGD 289
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,074,404
Number of extensions: 1237956
Number of successful extensions: 5700
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5656
Number of HSP's successfully gapped: 4
Length of query: 346
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,901,872
Effective search space: 3621154896
Effective search space used: 3621154896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003294
(1038 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058046.2| microspherule protein 1 isoform 1 [Mus musculus]. 399 e-112
Alignment gi|NP_001157628.1| microspherule protein 1 isoform 2 [Mus muscu... 375 e-104
Alignment gi|XP_003086451.1| PREDICTED: microspherule protein 1-like [Mus... 220 3e-58
>ref|NP_058046.2| microspherule protein 1 isoform 1 [Mus musculus].
Length = 462
Score = 399 bits (1026), Expect(2) = e-112
Identities = 214/275 (77%), Positives = 217/275 (78%)
Frame = +3
Query: 210 MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPXXXXXXXXXXXXXXDDE 389
MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIP DDE
Sbjct: 1 MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDE 60
Query: 390 LVESSLAKSSTRAKGASGVEPGRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLTKRVK 569
LVESSLAKSSTR KGA GVE GRC GLTKRVK
Sbjct: 61 LVESSLAKSSTRVKGAGGVESGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPTPGLTKRVK 120
Query: 570 KSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLY 749
KSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLY
Sbjct: 121 KSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLY 180
Query: 750 DPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQELLHRPPD 929
DPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGS+SQPTLETFQ+LLH PD
Sbjct: 181 DPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSSSQPTLETFQDLLHTHPD 240
Query: 930 AFYLARYCXALQAHWQLMKQYYLLXDRQCSRCPGG 1034
AFYLAR ALQAHWQLMKQYYLL D+ P G
Sbjct: 241 AFYLARTAKALQAHWQLMKQYYLLEDQTVQPLPKG 275
Score = 24.3 bits (51), Expect(2) = e-112
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2
Query: 1007 QTVQPLPRGD 1036
QTVQPLP+GD
Sbjct: 267 QTVQPLPKGD 276
>ref|NP_001157628.1| microspherule protein 1 isoform 2 [Mus musculus].
Length = 449
Score = 375 bits (963), Expect(2) = e-104
Identities = 201/262 (76%), Positives = 204/262 (77%)
Frame = +3
Query: 249 MASGTASRSEDEESLAGQKRASSQALGTIPXXXXXXXXXXXXXXDDELVESSLAKSSTRA 428
MASGTASRSEDEESLAGQKRASSQALGTIP DDELVESSLAKSSTR
Sbjct: 1 MASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELVESSLAKSSTRV 60
Query: 429 KGASGVEPGRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLTKRVKKSKQPLQVTKDLG 608
KGA GVE GRC GLTKRVKKSKQPLQVTKDLG
Sbjct: 61 KGAGGVESGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPTPGLTKRVKKSKQPLQVTKDLG 120
Query: 609 RWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLYDPVISKLACQAMR 788
RWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLYDPVISKLACQAMR
Sbjct: 121 RWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLYDPVISKLACQAMR 180
Query: 789 QLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQELLHRPPDAFYLARYCXALQA 968
QLHPEAIAAIQSKALFSKAEEQLLSKVGS+SQPTLETFQ+LLH PDAFYLAR ALQA
Sbjct: 181 QLHPEAIAAIQSKALFSKAEEQLLSKVGSSSQPTLETFQDLLHTHPDAFYLARTAKALQA 240
Query: 969 HWQLMKQYYLLXDRQCSRCPGG 1034
HWQLMKQYYLL D+ P G
Sbjct: 241 HWQLMKQYYLLEDQTVQPLPKG 262
Score = 24.3 bits (51), Expect(2) = e-104
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2
Query: 1007 QTVQPLPRGD 1036
QTVQPLP+GD
Sbjct: 254 QTVQPLPKGD 263
>ref|XP_003086451.1| PREDICTED: microspherule protein 1-like [Mus musculus].
Length = 355
Score = 220 bits (560), Expect(2) = 3e-58
Identities = 112/129 (86%), Positives = 115/129 (89%)
Frame = +3
Query: 648 VLQTNDLTSVHLGVKFSCRFTLREVQERWYALLYDPVISKLACQAMRQLHPEAIAAIQSK 827
VLQTNDLTSVHLGVKFSC FTLREVQERWYALLYDPVISKLACQAMRQLHPEAIAAIQSK
Sbjct: 40 VLQTNDLTSVHLGVKFSCCFTLREVQERWYALLYDPVISKLACQAMRQLHPEAIAAIQSK 99
Query: 828 ALFSKAEEQLLSKVGSTSQPTLETFQELLHRPPDAFYLARYCXALQAHWQLMKQYYLLXD 1007
ALFSKAEEQLLSKVGS+SQ TLETFQ+LLH PDAFYLAR ALQAHWQLMKQYYLL D
Sbjct: 100 ALFSKAEEQLLSKVGSSSQRTLETFQDLLHTHPDAFYLARTAKALQAHWQLMKQYYLLED 159
Query: 1008 RQCSRCPGG 1034
+ P G
Sbjct: 160 QTVQPLPKG 168
Score = 24.3 bits (51), Expect(2) = 3e-58
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2
Query: 1007 QTVQPLPRGD 1036
QTVQPLP+GD
Sbjct: 160 QTVQPLPKGD 169
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,299,386
Number of extensions: 1018171
Number of successful extensions: 4671
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4651
Number of HSP's successfully gapped: 6
Length of query: 346
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 244
Effective length of database: 12,553,887
Effective search space: 3063148428
Effective search space used: 3063148428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003294
(1038 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126173.2| PREDICTED: microspherule protein 1-like [Sus... 383 e-107
>ref|XP_003126173.2| PREDICTED: microspherule protein 1-like [Sus scrofa].
Length = 268
Score = 383 bits (984), Expect = e-107
Identities = 205/260 (78%), Positives = 207/260 (79%)
Frame = +3
Query: 249 MASGTASRSEDEESLAGQKRASSQALGTIPXXXXXXXXXXXXXXDDELVESSLAKSSTRA 428
MASGTASRSEDEESLAGQKRASSQALGTIP DDELVESSLAKSSTRA
Sbjct: 1 MASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELVESSLAKSSTRA 60
Query: 429 KGASGVEPGRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLTKRVKKSKQPLQVTKDLG 608
KGASGVEPGRC GLTKRVKKSKQPLQVTKDLG
Sbjct: 61 KGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVKKSKQPLQVTKDLG 120
Query: 609 RWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLYDPVISKLACQAMR 788
RWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLYDPVISKLACQAMR
Sbjct: 121 RWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLYDPVISKLACQAMR 180
Query: 789 QLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQELLHRPPDAFYLARYCXALQA 968
QLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQ+LLHR PDAFYLAR ALQA
Sbjct: 181 QLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPDAFYLARTAKALQA 240
Query: 969 HWQLMKQYYLLXDRQCSRCP 1028
HWQLMKQYYLL D+ P
Sbjct: 241 HWQLMKQYYLLEDQTAQDRP 260
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,698,169
Number of extensions: 801977
Number of successful extensions: 3833
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3809
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 246
Effective length of database: 8,854,232
Effective search space: 2178141072
Effective search space used: 2178141072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003294
(1038 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 319 2e-84
>Sscrofa_Chr05
|| Length = 111506441
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Plus
Query: 496 aggtgtccaaggcccccagcactccagtgccacccagccccgctccagcccctggactca 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15926965 aggtgtccaaggcccccagcactccagtgccacccagccccgctccagcccctggactca 15927024
Query: 556 ccaagcgtgtgaagaagagcaaacagcccctgcaggtgaccaaggatctgggccgctgga 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15927025 ccaagcgtgtgaagaagagcaaacagcccctgcaggtgaccaaggatctgggccgctgga 15927084
Query: 616 agcctgcagacgacctcctgctcatcaatgctgtgttgcag 656
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 15927085 agcctgcagacgacctcctgctcatcaatgctgtgttgcag 15927125
Score = 287 bits (145), Expect = 6e-75
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 356 caggttcatcaagaggaagaagtttgatgacgagctggtggagagcagcctggctaagtc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15926212 caggttcatcaagaggaagaagtttgatgacgagctggtggagagcagcctggctaagtc 15926271
Query: 416 ctctacccgggcgaagggggccagtggggtggaaccagggcgctgttcggggagtgagcc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15926272 ctctacccgggcgaagggggccagtggggtggaaccagggcgctgttcggggagtgagcc 15926331
Query: 476 ttcctccagtgagaagaagaaggtg 500
|||||||||||||||||||||||||
Sbjct: 15926332 ttcctccagtgagaagaagaaggtg 15926356
Score = 248 bits (125), Expect = 5e-63
Identities = 128/129 (99%)
Strand = Plus / Plus
Query: 232 tgctagattcatccctgatggcatcaggcactgccagccgctcagaggatgaggagtcgc 291
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15925744 tgctagattcatccttgatggcatcaggcactgccagccgctcagaggatgaggagtcgc 15925803
Query: 292 tggcagggcagaagcgggcctcctcacaggccttgggcaccatccctaaacggagaagct 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15925804 tggcagggcagaagcgggcctcctcacaggccttgggcaccatccctaaacggagaagct 15925863
Query: 352 cctccaggt 360
|||||||||
Sbjct: 15925864 cctccaggt 15925872
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 651 ttgcagaccaacgacctgacatctgtccacctgggcgtgaagttcagctgccgcttcacc 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15927271 ttgcagaccaacgacctgacatctgtccacctgggcgtgaagttcagctgccgcttcacc 15927330
Query: 711 ctgcgggaagtccaggagcgttggtacgccctgctctacgatcctgtcatctccaag 767
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15927331 ctgcgggaagtccaggagcgttggtacgccctgctctacgatcctgtcatctccaag 15927387
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 767 gctggcctgccaggctatgagacagctgcacccagaggccattgccgccatccagagcaa 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15928290 gctggcctgccaggctatgagacagctgcacccagaggccattgccgccatccagagcaa 15928349
Query: 827 ggcgctgtttagcaaggctgaggagcagctgctgagcaaagtgggatcg 875
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15928350 ggcgctgtttagcaaggctgaggagcagctgctgagcaaagtgggatcg 15928398
Score = 202 bits (102), Expect = 3e-49
Identities = 124/129 (96%), Gaps = 2/129 (1%)
Strand = Plus / Plus
Query: 875 gaccagccagcccaccttggagaccttccaggaactgctgcacagaccccccgatgcctt 934
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 15928687 gaccagccagcccaccttggagaccttccaggacctgctgcacagacaccccgatgcctt 15928746
Query: 935 ctacctggcccgttactg-cnaggctctgcaggcccactggcagctcatgaagcagtatt 993
|||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 15928747 ctacctggcccg-tactgccaaggctctgcaggcccactggcagctcatgaagcagtatt 15928805
Query: 994 atctgctgg 1002
|||||||||
Sbjct: 15928806 atctgctgg 15928814
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,925,901
Number of extensions: 160
Number of successful extensions: 160
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 6
Length of query: 1038
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1017
Effective length of database: 2,808,413,156
Effective search space: 2856156179652
Effective search space used: 2856156179652
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)