Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003295
(1771 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_847888.2| biglycan precursor [Bos taurus]. 707 0.0
Alignment gi|NP_001029481.1| asporin precursor [Bos taurus]. 402 e-112
Alignment gi|NP_776331.2| decorin precursor [Bos taurus]. 389 e-108
Alignment gi|NP_776859.1| prolargin precursor [Bos taurus]. 139 6e-33
Alignment gi|NP_776359.1| lumican precursor [Bos taurus]. 129 8e-30
Alignment gi|NP_001029769.1| extracellular matrix protein 2 precursor [Bo... 124 2e-28
Alignment gi|XP_002699370.1| PREDICTED: fibronectin leucine rich transmem... 115 1e-25
Alignment gi|XP_001253662.1| PREDICTED: fibronectin leucine rich transmem... 115 1e-25
Alignment gi|XP_002688798.1| PREDICTED: Podnl1 protein-like [Bos taurus]. 115 2e-25
Alignment gi|XP_614353.5| PREDICTED: Podnl1 protein-like [Bos taurus]. 115 2e-25
>ref|NP_847888.2| biglycan precursor [Bos taurus].
Length = 369
Score = 707 bits (1826), Expect = 0.0
Identities = 344/351 (98%), Positives = 348/351 (99%)
Frame = +3
Query: 195 FEQKAFWDFTLDDGLPMLNDEEASGADSTSGIPDLDALPPTFSAMCPFGCHCHLRVVQCS 374
FEQKAFWDFTLDDGLPMLNDEEASGA++TSGIPDLD+LPPT+SAMCPFGCHCHLRVVQCS
Sbjct: 19 FEQKAFWDFTLDDGLPMLNDEEASGAETTSGIPDLDSLPPTYSAMCPFGCHCHLRVVQCS 78
Query: 375 DLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPL 554
DLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH KAFSPL
Sbjct: 79 DLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL 138
Query: 555 RKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 734
RKLQKLYISKNHLVEIPPNLPSSL ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN
Sbjct: 139 RKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 198
Query: 735 SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 914
SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR
Sbjct: 199 SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 258
Query: 915 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKVGV 1094
LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVY HTNNITKVGV
Sbjct: 259 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGV 318
Query: 1095 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 1247
NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK
Sbjct: 319 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 369
>ref|NP_001029481.1| asporin precursor [Bos taurus].
Length = 370
Score = 402 bits (1033), Expect = e-112
Identities = 193/338 (57%), Positives = 256/338 (75%), Gaps = 4/338 (1%)
Frame = +3
Query: 246 LNDEEASGADSTSGIPDLDALPPTFS----AMCPFGCHCHLRVVQCSDLGLKAVPKEISP 413
+ DE S AD+ S P + + P F + CPFGC C+ RVV CSDLGL +VP I
Sbjct: 34 MEDEGDSDADN-SLFPTREPINPFFPFDLFSTCPFGCQCYSRVVHCSDLGLSSVPSNIPF 92
Query: 414 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPLRKLQKLYISKNHL 593
DT ++DLQNN I E++++DFKGL LYAL+L NNK++KIH KAF +KL++LY+S N L
Sbjct: 93 DTRMVDLQNNKIKEIKENDFKGLTSLYALILNNNKLTKIHPKAFLTTKKLRRLYLSHNQL 152
Query: 594 VEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 773
EIP NLP SLAELRIHDN+++K+ K F G+ ++ +EM NPL+N+G EPGAF+G+ +
Sbjct: 153 SEIPLNLPKSLAELRIHDNKVKKIQKATFKGMNALHVLEMSANPLDNNGIEPGAFEGVTV 212
Query: 774 NYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 953
++RI+EAKLT IPK+LP TL ELHLD+NKI +ELED RY L RLGLG+N+I IEN
Sbjct: 213 FHIRIAEAKLTSIPKELPSTLLELHLDYNKISVVELEDFKRYKDLQRLGLGNNRITDIEN 272
Query: 954 GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKVGVNDFCPVGFGVKRA 1133
GSL+ +P +RE+HL+NNKL +VP+GL +LK LQ+++ H+N+ITKVGVNDFCP +K++
Sbjct: 273 GSLANIPRVREIHLENNKLKKVPSGLQELKYLQIIFLHSNSITKVGVNDFCPTVPKMKKS 332
Query: 1134 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 1247
Y+ ISL NNPV YWEVQPATFRCV R+++Q GN++K
Sbjct: 333 LYSAISLSNNPVKYWEVQPATFRCVLSRMSVQLGNFRK 370
>ref|NP_776331.2| decorin precursor [Bos taurus].
Length = 360
Score = 389 bits (998), Expect = e-108
Identities = 190/351 (54%), Positives = 250/351 (71%), Gaps = 1/351 (0%)
Frame = +3
Query: 195 FEQKAFWDFTLDDGLPMLNDEEASGADSTSGIPDLDALPPTFSAMCPFGCHCHLRVVQCS 374
F+QK +DF L+D EASG P++ + P +CPF C CHLRVVQCS
Sbjct: 19 FQQKGLFDFMLED--------EASGIGPEEHFPEVPEIEP-MGPVCPFRCQCHLRVVQCS 69
Query: 375 DLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPL 554
DLGL+ VPK++ PDT LLDLQNN I+E++ DFK L++L+ L+L+NNKISKI AF+PL
Sbjct: 70 DLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 129
Query: 555 RKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 734
KL++LY+SKN L E+P +P +L ELR+H+N I KV K VF+GL M +E+G NPL++
Sbjct: 130 VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 189
Query: 735 SGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLY 911
SG E GAF G+ KL+Y+RI++ +T IP+ LP +L ELHLD NKI ++ L + L
Sbjct: 190 SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 249
Query: 912 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKVG 1091
+LGL N I ++NGSL+ P LRELHL+NNKL +VP GL D K +QVVY H NNI+ +G
Sbjct: 250 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 309
Query: 1092 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 1244
NDFCP G+ K+A Y+G+SLF+NPV YWE+QP+TFRCV R A+Q GNYK
Sbjct: 310 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 360
>ref|NP_776859.1| prolargin precursor [Bos taurus].
Length = 381
Score = 139 bits (351), Expect = 6e-33
Identities = 94/279 (33%), Positives = 143/279 (51%), Gaps = 6/279 (2%)
Frame = +3
Query: 291 PDLDALPPTFSAMCPFGCHC---HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELR 461
P L PP+ CP C+C + C L+ VP I L LQNN I+EL
Sbjct: 59 PPLPPGPPSVFPDCPRECYCPPDFPSALYCDSRNLRKVPV-IPSRIHYLYLQNNFITELP 117
Query: 462 KDDFKGLQHLYALVLVNNKISKIHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRI 641
+ FK L + L NN+I K+ + L L LY+ KN L E+P LP +L +LR+
Sbjct: 118 VESFKNATGLRWINLDNNRIRKVDQRVLEKLPSLVFLYLEKNQLEEVPAALPRNLEQLRL 177
Query: 642 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPK 818
N+I ++P GVFS L N+ +++ N L + F+P F GLK L L ++ L +P
Sbjct: 178 SQNQISRIPPGVFSKLENLLLLDLQHNKLSDGVFKPDTFQGLKNLMQLNLAHNTLRKMPP 237
Query: 819 DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI--RMIENGSLSFLPTLRELH 992
+P +++L+LD N+I+AI + L + L +NQ+ R + S + + L LH
Sbjct: 238 KVPSAIHQLYLDSNRIEAIPSGYFKGFPNLAFIRLNYNQLSDRGLPKNSFN-ISNLLVLH 296
Query: 993 LDNNKLSRVPAGLPDLKLLQVVYPHTNNITKVGVNDFCP 1109
L +N++S VPA L+ +Y + N+I K+ CP
Sbjct: 297 LSHNRISSVPA---ISSRLEHLYLNNNSIEKINGTQICP 332
>ref|NP_776359.1| lumican precursor [Bos taurus].
Length = 342
Score = 129 bits (324), Expect = 8e-30
Identities = 100/303 (33%), Positives = 152/303 (50%), Gaps = 7/303 (2%)
Frame = +3
Query: 321 SAMCPFGCHC---HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHL 491
S C C+C + + C +L LK+VP + P L L+NN I + F+ + L
Sbjct: 38 SPNCAPECNCPESYPSAMYCDELKLKSVPM-VPPGIKYLYLRNNQIDHIDDKAFENVTDL 96
Query: 492 YALVLVNNKI--SKIHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKV 665
L+L +N + SKI K FS L++L+KL+I+ N+L E LP SL +L++ +N+I K+
Sbjct: 97 QWLILDHNLLENSKIKGKVFSKLKQLKKLHINYNNLTESVGPLPKSLVDLQLTNNKISKL 156
Query: 666 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNE 842
G F GL N+ I + N L+ A GLK L YL +S ++T +P LP +L
Sbjct: 157 --GSFDGLVNLTFIHLQHNQLKEDAVS-AALKGLKSLEYLDLSFNQMTKLPSGLPVSLLT 213
Query: 843 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-LPTLRELHLDNNKLSRV 1019
L+LD+NKI I E R+S L L L HN++ SF + +L EL L NKL +
Sbjct: 214 LYLDNNKISNIPDEYFKRFSALQYLRLSHNELADSGVPGNSFNVSSLLELDLSYNKLKSI 273
Query: 1020 PAGLPDLKLLQVVYPHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 1199
P + L+ Y N + K V FC + + + + L N + + P +
Sbjct: 274 PTVNEN---LENYYLEVNELEKFDVKSFCKILGPLSYSKIKHLRLDGNHITQTSLPPDMY 330
Query: 1200 RCV 1208
C+
Sbjct: 331 ECL 333
>ref|NP_001029769.1| extracellular matrix protein 2 precursor [Bos taurus].
Length = 680
Score = 124 bits (312), Expect = 2e-28
Identities = 86/269 (31%), Positives = 139/269 (51%), Gaps = 7/269 (2%)
Frame = +3
Query: 249 NDEEASGADSTSGIPDLDALPPTFSAM--CPFGCHCHLRVVQCSDLGLKAVPKEISPDTT 422
+DE+ + T +P +P T + P C + + C L +P +P+ T
Sbjct: 268 DDEDETIRGDTFRMPPRLPIPATPRGIPSLPSMCSLSYKTISCISADLTQIPPLTAPEIT 327
Query: 423 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKI--SKIHAKAFSPLRKLQKLYISKNHLV 596
L+L +N I+ + + F GL +L L L N I S I KAF L+ L +L + N+LV
Sbjct: 328 SLELIDNSITSIPDEAFNGLPNLERLDLSKNNITSSGIGPKAFKFLKNLMRLNMDGNNLV 387
Query: 597 EIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-L 773
IP LPS+L EL+I++N+++ + + S L + +E+ GN L + AF LK L
Sbjct: 388 TIPSELPSTLEELKINENKLQVIDEESLSDLNQLVTLELEGNNLSETNVNSLAFKPLKSL 447
Query: 774 NYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 953
+YLR+ K IP+ LP ++ EL+L++N+I+ I K+ +GL +N+I
Sbjct: 448 SYLRLGRNKFRIIPQGLPASIEELYLENNQIEEITEISFNHTRKINVIGLRYNKIEENRI 507
Query: 954 GSLSFL--PTLRELHLDNNKLSRVPAGLP 1034
L+++ L + L NKL VP+ LP
Sbjct: 508 APLAWINQENLESIDLSYNKLYHVPSYLP 536
>ref|XP_002699370.1| PREDICTED: fibronectin leucine rich transmembrane protein 3-like [Bos
taurus].
Length = 677
Score = 115 bits (289), Expect = 1e-25
Identities = 86/263 (32%), Positives = 121/263 (46%), Gaps = 4/263 (1%)
Frame = +3
Query: 321 SAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELR-KDDFKGLQHLYA 497
S CP C C + C+D GL ++P +I D T L LQNN I+ D K
Sbjct: 53 STTCPSVCRCDNGFIYCNDRGLTSIPADIPDDATTLYLQNNQINNAGIPQDLK------- 105
Query: 498 LVLVNNKISKIHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGV 677
+K++ +Q +Y+ +N L E P NLP SL EL + DN +R + +
Sbjct: 106 --------TKVN---------VQVIYLYENDLDEFPVNLPRSLRELHLQDNNVRTIARDS 148
Query: 678 FSGLRNMNCIEMGGNPLENSGFEPGAF-DGLKLNYLRISEAKLTGIPKDLPETLNELHLD 854
+ + + + + N + E AF D +L L +S L+ IP LP TL EL LD
Sbjct: 149 LARIPLLEKLHLDDNSVSTVSIEEDAFADSKQLKLLFLSRNHLSSIPSGLPRTLEELRLD 208
Query: 855 HNKIQAIELEDLLRYSKLYRLGLGHNQI--RMIENGSLSFLPTLRELHLDNNKLSRVPAG 1028
N+I I L S L RL L N + + I + + S L L EL L N L+ P
Sbjct: 209 DNRISTIPLHAFKGLSSLRRLVLDGNLLANQRIADDTFSRLQNLTELSLVRNSLAAPPLN 268
Query: 1029 LPDLKLLQVVYPHTNNITKVGVN 1097
LP + LQ +Y N I+ V N
Sbjct: 269 LPSAR-LQKLYLQDNAISHVPYN 290
>ref|XP_001253662.1| PREDICTED: fibronectin leucine rich transmembrane protein 3 [Bos
taurus].
Length = 677
Score = 115 bits (289), Expect = 1e-25
Identities = 86/263 (32%), Positives = 121/263 (46%), Gaps = 4/263 (1%)
Frame = +3
Query: 321 SAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELR-KDDFKGLQHLYA 497
S CP C C + C+D GL ++P +I D T L LQNN I+ D K
Sbjct: 53 STTCPSVCRCDNGFIYCNDRGLTSIPADIPDDATTLYLQNNQINNAGIPQDLK------- 105
Query: 498 LVLVNNKISKIHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGV 677
+K++ +Q +Y+ +N L E P NLP SL EL + DN +R + +
Sbjct: 106 --------TKVN---------VQVIYLYENDLDEFPVNLPRSLRELHLQDNNVRTIARDS 148
Query: 678 FSGLRNMNCIEMGGNPLENSGFEPGAF-DGLKLNYLRISEAKLTGIPKDLPETLNELHLD 854
+ + + + + N + E AF D +L L +S L+ IP LP TL EL LD
Sbjct: 149 LARIPLLEKLHLDDNSVSTVSIEEDAFADSKQLKLLFLSRNHLSSIPSGLPRTLEELRLD 208
Query: 855 HNKIQAIELEDLLRYSKLYRLGLGHNQI--RMIENGSLSFLPTLRELHLDNNKLSRVPAG 1028
N+I I L S L RL L N + + I + + S L L EL L N L+ P
Sbjct: 209 DNRISTIPLHAFKGLSSLRRLVLDGNLLANQRIADDTFSRLQNLTELSLVRNSLAAPPLN 268
Query: 1029 LPDLKLLQVVYPHTNNITKVGVN 1097
LP + LQ +Y N I+ V N
Sbjct: 269 LPSAR-LQKLYLQDNAISHVPYN 290
>ref|XP_002688798.1| PREDICTED: Podnl1 protein-like [Bos taurus].
Length = 653
Score = 115 bits (287), Expect = 2e-25
Identities = 89/281 (31%), Positives = 131/281 (46%), Gaps = 6/281 (2%)
Frame = +3
Query: 255 EEASGADSTSGIPDLDALPPTFSAMCPFGCHC-HLRVVQCSDLGLKAVPKEISPDTTLLD 431
+ A G + + P L CP C C V C L L+ P I+ L
Sbjct: 53 QPALGMEDDASFPHLGESSQPPPRACPPRCSCPRPDTVDCDGLDLRVFPDNITRAAQHLS 112
Query: 432 LQNNDISELRKDDFKGLQHLYALVLVNNKISK--IHAKAFSPLRKLQKLYISKNHLVEIP 605
LQNN + EL ++ L L L L NN IS + +AF L +LQ +Y++ N L P
Sbjct: 113 LQNNQLQELPYNELSRLSGLRTLNLHNNLISSEGLPDEAFESLTQLQHIYVAHNKLSVAP 172
Query: 606 PNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYL 782
LP SL + N + ++ F + + + N L N+G P AF G + + L
Sbjct: 173 QFLPRSLRVADLAANEVTEIFPLTFGEKPALRSVYLHNNQLSNAGLPPDAFRGSEAVATL 232
Query: 783 RISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI--RMIENG 956
+S +L+ +P LP +L LHL +N I + L R + L L L HNQ+ ++
Sbjct: 233 SLSSNQLSYVPPSLPPSLERLHLQNNLISKVPRGALSRQTHLRELYLQHNQLTDSGLDAT 292
Query: 957 SLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNI 1079
+ S L L L L +N+L+ VPAGLP + L V++ N I
Sbjct: 293 TFSKLHRLEYLDLSHNQLAAVPAGLP--RTLAVLHLGRNRI 331
Score = 113 bits (282), Expect = 6e-25
Identities = 82/244 (33%), Positives = 122/244 (50%), Gaps = 5/244 (2%)
Frame = +3
Query: 384 LKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK--IHAKAFSPLR 557
L P+ + + DL N+++E+ F L ++ L NN++S + AF
Sbjct: 168 LSVAPQFLPRSLRVADLAANEVTEIFPLTFGEKPALRSVYLHNNQLSNAGLPPDAFRGSE 227
Query: 558 KLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 737
+ L +S N L +PP+LP SL L + +N I KVP+G S ++ + + N L +S
Sbjct: 228 AVATLSLSSNQLSYVPPSLPPSLERLHLQNNLISKVPRGALSRQTHLRELYLQHNQLTDS 287
Query: 738 GFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 914
G + F L +L YL +S +L +P LP TL LHL N+I+ +E L L
Sbjct: 288 GLDATTFSKLHRLEYLDLSHNQLAAVPAGLPRTLAVLHLGRNRIRWVEAARLGGLRGLRY 347
Query: 915 LGLGHNQIRM--IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKV 1088
L L HNQ+ + G+L L L LHL N+L RVP LP +L +V PH N + +
Sbjct: 348 LLLQHNQLGATGLPAGALRPLRGLHTLHLYGNRLDRVPQALP-RRLRALVLPH-NRVAAL 405
Query: 1089 GVND 1100
G D
Sbjct: 406 GARD 409
Score = 108 bits (269), Expect = 2e-23
Identities = 76/222 (34%), Positives = 112/222 (50%), Gaps = 5/222 (2%)
Frame = +3
Query: 384 LKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI--SKIHAKAFSPLR 557
L VP + P L LQNN IS++ + HL L L +N++ S + A FS L
Sbjct: 239 LSYVPPSLPPSLERLHLQNNLISKVPRGALSRQTHLRELYLQHNQLTDSGLDATTFSKLH 298
Query: 558 KLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 737
+L+ L +S N L +P LP +LA L + NRIR V GLR + + + N L +
Sbjct: 299 RLEYLDLSHNQLAAVPAGLPRTLAVLHLGRNRIRWVEAARLGGLRGLRYLLLQHNQLGAT 358
Query: 738 GFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 914
G GA L+ L+ L + +L +P+ LP L L L HN++ A+ DL +L
Sbjct: 359 GLPAGALRPLRGLHTLHLYGNRLDRVPQALPRRLRALVLPHNRVAALGARDLTSTPRLAE 418
Query: 915 LGLGHNQIRMIENGSLSF--LPTLRELHLDNNKLSRVPAGLP 1034
L L +N + +F L LR L L N+L+++P+GLP
Sbjct: 419 LNLAYNCLASARVHLRAFRRLRALRSLDLAGNQLTQLPSGLP 460
Score = 91.3 bits (225), Expect = 3e-18
Identities = 63/202 (31%), Positives = 99/202 (49%), Gaps = 3/202 (1%)
Frame = +3
Query: 384 LKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS--KIHAKAFSPLR 557
L VP+ + L L +N ++ L D L L L N ++ ++H +AF LR
Sbjct: 381 LDRVPQALPRRLRALVLPHNRVAALGARDLTSTPRLAELNLAYNCLASARVHLRAFRRLR 440
Query: 558 KLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 737
L+ L ++ N L ++P LP+ L LR+ N++R + +GL + + + N L
Sbjct: 441 ALRSLDLAGNQLTQLPSGLPAGLHTLRLQRNQLRTLEPEPLAGLHQLQELSLAHNRLRVG 500
Query: 738 GFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 914
G PG + L+ L L +S +L+ +P DLPE L ELHL N+I + E L +L
Sbjct: 501 GIGPGTWHELQALQVLDLSHNELSFVPPDLPEALEELHLQGNRIGHVGPEAFLSTPRLRA 560
Query: 915 LGLGHNQIRMIENGSLSFLPTL 980
L L N++ M +FL L
Sbjct: 561 LFLRANRLHMTSIAPEAFLGLL 582
>ref|XP_614353.5| PREDICTED: Podnl1 protein-like [Bos taurus].
Length = 653
Score = 115 bits (287), Expect = 2e-25
Identities = 89/281 (31%), Positives = 131/281 (46%), Gaps = 6/281 (2%)
Frame = +3
Query: 255 EEASGADSTSGIPDLDALPPTFSAMCPFGCHC-HLRVVQCSDLGLKAVPKEISPDTTLLD 431
+ A G + + P L CP C C V C L L+ P I+ L
Sbjct: 53 QPALGMEDDASFPHLGESSQPPPRACPPRCSCPRPDTVDCDGLDLRVFPDNITRAAQHLS 112
Query: 432 LQNNDISELRKDDFKGLQHLYALVLVNNKISK--IHAKAFSPLRKLQKLYISKNHLVEIP 605
LQNN + EL ++ L L L L NN IS + +AF L +LQ +Y++ N L P
Sbjct: 113 LQNNQLQELPYNELSRLSGLRTLNLHNNLISSEGLPDEAFESLTQLQHIYVAHNKLSVAP 172
Query: 606 PNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYL 782
LP SL + N + ++ F + + + N L N+G P AF G + + L
Sbjct: 173 QFLPRSLRVADLAANEVTEIFPLTFGEKPALRSVYLHNNQLSNAGLPPDAFRGSEAVATL 232
Query: 783 RISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI--RMIENG 956
+S +L+ +P LP +L LHL +N I + L R + L L L HNQ+ ++
Sbjct: 233 SLSSNQLSYVPPSLPPSLERLHLQNNLISKVPRGALSRQTHLRELYLQHNQLTDSGLDAT 292
Query: 957 SLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNI 1079
+ S L L L L +N+L+ VPAGLP + L V++ N I
Sbjct: 293 TFSKLHRLEYLDLSHNQLAAVPAGLP--RTLAVLHLGRNRI 331
Score = 113 bits (282), Expect = 6e-25
Identities = 82/244 (33%), Positives = 122/244 (50%), Gaps = 5/244 (2%)
Frame = +3
Query: 384 LKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK--IHAKAFSPLR 557
L P+ + + DL N+++E+ F L ++ L NN++S + AF
Sbjct: 168 LSVAPQFLPRSLRVADLAANEVTEIFPLTFGEKPALRSVYLHNNQLSNAGLPPDAFRGSE 227
Query: 558 KLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 737
+ L +S N L +PP+LP SL L + +N I KVP+G S ++ + + N L +S
Sbjct: 228 AVATLSLSSNQLSYVPPSLPPSLERLHLQNNLISKVPRGALSRQTHLRELYLQHNQLTDS 287
Query: 738 GFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 914
G + F L +L YL +S +L +P LP TL LHL N+I+ +E L L
Sbjct: 288 GLDATTFSKLHRLEYLDLSHNQLAAVPAGLPRTLAVLHLGRNRIRWVEAARLGGLRGLRY 347
Query: 915 LGLGHNQIRM--IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKV 1088
L L HNQ+ + G+L L L LHL N+L RVP LP +L +V PH N + +
Sbjct: 348 LLLQHNQLGATGLPAGALRPLRGLHTLHLYGNRLDRVPQALP-RRLRALVLPH-NRVAAL 405
Query: 1089 GVND 1100
G D
Sbjct: 406 GARD 409
Score = 108 bits (269), Expect = 2e-23
Identities = 76/222 (34%), Positives = 112/222 (50%), Gaps = 5/222 (2%)
Frame = +3
Query: 384 LKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI--SKIHAKAFSPLR 557
L VP + P L LQNN IS++ + HL L L +N++ S + A FS L
Sbjct: 239 LSYVPPSLPPSLERLHLQNNLISKVPRGALSRQTHLRELYLQHNQLTDSGLDATTFSKLH 298
Query: 558 KLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 737
+L+ L +S N L +P LP +LA L + NRIR V GLR + + + N L +
Sbjct: 299 RLEYLDLSHNQLAAVPAGLPRTLAVLHLGRNRIRWVEAARLGGLRGLRYLLLQHNQLGAT 358
Query: 738 GFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 914
G GA L+ L+ L + +L +P+ LP L L L HN++ A+ DL +L
Sbjct: 359 GLPAGALRPLRGLHTLHLYGNRLDRVPQALPRRLRALVLPHNRVAALGARDLTSTPRLAE 418
Query: 915 LGLGHNQIRMIENGSLSF--LPTLRELHLDNNKLSRVPAGLP 1034
L L +N + +F L LR L L N+L+++P+GLP
Sbjct: 419 LNLAYNCLASARVHLRAFRRLRALRSLDLAGNQLTQLPSGLP 460
Score = 91.3 bits (225), Expect = 3e-18
Identities = 63/202 (31%), Positives = 99/202 (49%), Gaps = 3/202 (1%)
Frame = +3
Query: 384 LKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS--KIHAKAFSPLR 557
L VP+ + L L +N ++ L D L L L N ++ ++H +AF LR
Sbjct: 381 LDRVPQALPRRLRALVLPHNRVAALGARDLTSTPRLAELNLAYNCLASARVHLRAFRRLR 440
Query: 558 KLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 737
L+ L ++ N L ++P LP+ L LR+ N++R + +GL + + + N L
Sbjct: 441 ALRSLDLAGNQLTQLPSGLPAGLHTLRLQRNQLRTLEPEPLAGLHQLQELSLAHNRLRVG 500
Query: 738 GFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 914
G PG + L+ L L +S +L+ +P DLPE L ELHL N+I + E L +L
Sbjct: 501 GIGPGTWHELQALQVLDLSHNELSFVPPDLPEALEELHLQGNRIGHVGPEAFLSTPRLRA 560
Query: 915 LGLGHNQIRMIENGSLSFLPTL 980
L L N++ M +FL L
Sbjct: 561 LFLRANRLHMTSIAPEAFLGLL 582
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 62,044,158
Number of extensions: 1852569
Number of successful extensions: 14528
Number of sequences better than 1.0e-05: 172
Number of HSP's gapped: 13338
Number of HSP's successfully gapped: 339
Length of query: 590
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 482
Effective length of database: 14,107,870
Effective search space: 6799993340
Effective search space used: 6799993340
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003295
(1771 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003229.1| biglycan precursor [Canis lupus familiaris]. 696 0.0
Alignment gi|XP_853321.1| PREDICTED: similar to Asporin precursor [Canis ... 399 e-111
Alignment gi|NP_001003228.1| decorin precursor [Canis lupus familiaris]. 392 e-109
Alignment gi|XP_545678.2| PREDICTED: similar to Prolargin precursor (Prol... 137 4e-32
Alignment gi|XP_533562.2| PREDICTED: similar to Extracellular matrix prot... 132 8e-31
Alignment gi|XP_855323.1| PREDICTED: similar to Extracellular matrix prot... 124 4e-28
Alignment gi|XP_542026.2| PREDICTED: similar to Fibromodulin precursor (F... 114 2e-25
Alignment gi|XP_539715.1| PREDICTED: similar to Keratocan precursor (KTN)... 114 3e-25
Alignment gi|XP_852485.1| PREDICTED: similar to Keratocan precursor (KTN)... 114 3e-25
Alignment gi|XP_540888.1| PREDICTED: similar to fibronectin leucine rich ... 113 7e-25
>ref|NP_001003229.1| biglycan precursor [Canis lupus familiaris].
Length = 369
Score = 696 bits (1796), Expect = 0.0
Identities = 338/351 (96%), Positives = 343/351 (97%)
Frame = +3
Query: 195 FEQKAFWDFTLDDGLPMLNDEEASGADSTSGIPDLDALPPTFSAMCPFGCHCHLRVVQCS 374
FEQK FWDFTLDDGLPMLNDEEASGA++TSG+PDLDAL PT+SAMCPFGCHCHLRVVQCS
Sbjct: 19 FEQKGFWDFTLDDGLPMLNDEEASGAETTSGVPDLDALTPTYSAMCPFGCHCHLRVVQCS 78
Query: 375 DLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPL 554
DLGLKAVPKEISPDT LLDLQNNDISELR DDFKGL HLYALVLVNNKISKIH KAFSPL
Sbjct: 79 DLGLKAVPKEISPDTMLLDLQNNDISELRADDFKGLHHLYALVLVNNKISKIHEKAFSPL 138
Query: 555 RKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 734
RKLQKLYISKNHLVEIPPNLPSSL ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN
Sbjct: 139 RKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 198
Query: 735 SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 914
SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR
Sbjct: 199 SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 258
Query: 915 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKVGV 1094
LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP+GLPDLKLLQVVY HTNNITKVGV
Sbjct: 259 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPSGLPDLKLLQVVYLHTNNITKVGV 318
Query: 1095 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 1247
NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK
Sbjct: 319 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 369
>ref|XP_853321.1| PREDICTED: similar to Asporin precursor [Canis familiaris].
Length = 372
Score = 399 bits (1025), Expect = e-111
Identities = 188/329 (57%), Positives = 249/329 (75%), Gaps = 4/329 (1%)
Frame = +3
Query: 273 DSTSGIPDLDALPPTFS----AMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQN 440
D S P + + P F CPFGC C+ RVV CSDLGL +VP I DT ++DLQN
Sbjct: 44 DDNSLFPTREPINPFFPFDLFPTCPFGCQCYSRVVHCSDLGLSSVPSNIPFDTQMIDLQN 103
Query: 441 NDISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPLRKLQKLYISKNHLVEIPPNLPS 620
N I E++++DFKGL LYAL+L NNK++KIH KAF +KL++LY+S N L EIP NLP
Sbjct: 104 NKIKEIKENDFKGLTSLYALILNNNKLTKIHPKAFLTTKKLRRLYLSHNQLSEIPFNLPK 163
Query: 621 SLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 800
SLAELRIHDN+++K+ K F G+ ++ +EM NPL+N+G EPGAF+G+ + ++RI+EAK
Sbjct: 164 SLAELRIHDNKVKKIQKETFKGMNTLHVLEMSANPLDNNGIEPGAFEGVTVFHIRIAEAK 223
Query: 801 LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 980
LT IPK+LP TL ELHLD+NKI +ELED RY L RLGLG+N+I IENGSL+ +P +
Sbjct: 224 LTSIPKELPSTLLELHLDYNKISTVELEDFKRYKDLQRLGLGNNRIADIENGSLANIPRV 283
Query: 981 RELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 1160
RE+HL+NNKL ++P+GL +LK LQ+++ H+N+ITKVGVNDFCP +K++ Y+ ISL N
Sbjct: 284 REIHLENNKLKKIPSGLQELKYLQIIFLHSNSITKVGVNDFCPTVPKMKKSLYSAISLSN 343
Query: 1161 NPVPYWEVQPATFRCVTDRLAIQFGNYKK 1247
NPV YWEVQPATFRCV R+++Q GN++K
Sbjct: 344 NPVRYWEVQPATFRCVVSRMSVQLGNFRK 372
>ref|NP_001003228.1| decorin precursor [Canis lupus familiaris].
Length = 360
Score = 392 bits (1007), Expect = e-109
Identities = 197/354 (55%), Positives = 253/354 (71%), Gaps = 4/354 (1%)
Frame = +3
Query: 195 FEQKAFWDFTLDDGLPMLNDEEASGA---DSTSGIPDLDALPPTFSAMCPFGCHCHLRVV 365
F+Q+ +DF L+D EASG D +PDL+ L P +CPF C CHLRVV
Sbjct: 19 FQQRGLFDFMLED--------EASGIGPEDRAPDMPDLELLGP----VCPFRCQCHLRVV 66
Query: 366 QCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHAKAF 545
QCSDLGL VPK++ PDTTLLDLQNN I+E++ DFK L++L+ L+LVNNKISKI AF
Sbjct: 67 QCSDLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHTLILVNNKISKISPGAF 126
Query: 546 SPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 725
+PL KL++LY+SKNHL E+P +P +L ELR H+N I KV K VF+GL M +E+G NP
Sbjct: 127 TPLLKLERLYLSKNHLKELPEKMPKTLQELRAHENEITKVRKAVFNGLNQMIVVELGTNP 186
Query: 726 LENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYS 902
L++SG E GAF G+ KL+Y+RI++ +T IP+ LP +L ELHL+ NKI ++ L +
Sbjct: 187 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLEGNKITKVDASSLKGLN 246
Query: 903 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNIT 1082
L +LGL N I ++NG+L+ P LRELHLDNNKL RVP GL + K +QVVY H NNI+
Sbjct: 247 NLAKLGLSFNSISAVDNGTLANTPHLRELHLDNNKLIRVPGGLAEHKYIQVVYLHNNNIS 306
Query: 1083 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 1244
VG NDFCP G+ K+A Y+G+SLF+NPV YWE+QP+TFRCV R AIQ GNYK
Sbjct: 307 AVGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRSAIQLGNYK 360
>ref|XP_545678.2| PREDICTED: similar to Prolargin precursor (Proline-arginine-rich end
leucine-rich repeat protein) [Canis familiaris].
Length = 379
Score = 137 bits (344), Expect = 4e-32
Identities = 95/279 (34%), Positives = 143/279 (51%), Gaps = 6/279 (2%)
Frame = +3
Query: 291 PDLDALPPTFSAMCPFGCHCHL---RVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELR 461
P L PP+ CP C+C + C L+ VP I P L LQNN I+EL
Sbjct: 57 PPLPPGPPSIFPDCPRECYCPSDFPSALYCDSRNLRKVPI-IPPRIHYLYLQNNFITELP 115
Query: 462 KDDFKGLQHLYALVLVNNKISKIHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRI 641
+ F+ L + L NN+I KI K L L LY+ KN L E+P LP +L +LR+
Sbjct: 116 VESFQNATGLRWINLDNNRIRKIDQKVLEKLPSLVFLYMEKNQLEEVPSALPRNLEQLRL 175
Query: 642 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPK 818
N+I ++P GVFS L ++ +++ N L + F+P F GLK L L ++ L +P
Sbjct: 176 SQNQISRIPPGVFSKLDSLLLLDLQHNKLSDGVFKPDTFQGLKNLMQLNLAHNILRKMPP 235
Query: 819 DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI--RMIENGSLSFLPTLRELH 992
+P +++L+LD NKI+ I + L + L +N++ R + S + + L LH
Sbjct: 236 KVPAAIHQLYLDSNKIETIPNGYFKGFPNLAFIRLNYNRLSDRGLPKNSFN-ISNLLVLH 294
Query: 993 LDNNKLSRVPAGLPDLKLLQVVYPHTNNITKVGVNDFCP 1109
L +NK+S VPA L+ +Y + N+I K+ CP
Sbjct: 295 LSHNKISSVPA---INNKLEHLYLNNNSIEKINGTQICP 330
>ref|XP_533562.2| PREDICTED: similar to Extracellular matrix protein 2 precursor
(Matrix glycoprotein SC1/ECM2) [Canis familiaris].
Length = 727
Score = 132 bits (333), Expect = 8e-31
Identities = 85/247 (34%), Positives = 128/247 (51%), Gaps = 5/247 (2%)
Frame = +3
Query: 309 PPTFSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQH 488
PP P GC R + C GL +P P+ T L+L N I+ + + F GL +
Sbjct: 337 PPRGMPSVPSGCSLSYRTISCISAGLLQIPPLTGPEITSLELSGNSITAIPDEAFNGLPN 396
Query: 489 LYALVLVNNKISK--IHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRK 662
L L L N I+ I KAF L+KL +L + N+L EIP LPS+L EL+I++N ++
Sbjct: 397 LERLDLSKNNITSPGIGPKAFKRLKKLMRLNLDGNNLAEIPSELPSALEELKINENGLQA 456
Query: 663 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLN 839
V + S L + +E+ GN L + P AF LK L+YLR+ K IP+ LP ++
Sbjct: 457 VSEESLSDLNQLVTLELEGNNLSETNVNPLAFKSLKSLSYLRLGRNKFRIIPQGLPASIE 516
Query: 840 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL--PTLRELHLDNNKLS 1013
EL+L++N I+ I K+ + L +N++ L+++ L + L NKL
Sbjct: 517 ELYLENNHIEEITEICFNHTRKINIIVLRYNKLEENRIAPLAWINQENLESIDLSYNKLY 576
Query: 1014 RVPAGLP 1034
VP+ LP
Sbjct: 577 HVPSYLP 583
>ref|XP_855323.1| PREDICTED: similar to Extracellular matrix protein 2 precursor
(Matrix glycoprotein SC1/ECM2) [Canis familiaris].
Length = 606
Score = 124 bits (310), Expect = 4e-28
Identities = 91/272 (33%), Positives = 142/272 (52%), Gaps = 6/272 (2%)
Frame = +3
Query: 291 PDLDALPPTFSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDD 470
PDL A + P C + CS++ +K +P P L L N+I+++
Sbjct: 267 PDLGAAEQAMPPL-PASCLLARAAIACSNVKMKHIPALTDPGLATLYLAENEIAKIPAHA 325
Query: 471 FKGLQHLYALVLVNNKISK--IHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIH 644
F+GL +L L L NK+ +H AF L +L++L + N L +P LP+SL EL+++
Sbjct: 326 FRGLPNLQWLDLSKNKLDAQGLHPDAFKNLTRLKRLNLDGNSLAAVPA-LPASLQELKLN 384
Query: 645 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD 821
DN ++ + F GL + +E+ GN L + P AF L L YLR+ L IP
Sbjct: 385 DNVLQGLQHSSFRGLSRLLTLEVEGNQLHDGNISPLAFQPLHSLLYLRLDRNHLRTIPPG 444
Query: 822 LPETLNELHLDHNKIQAIELEDLLRYS-KLYRLGLGHNQIR--MIENGSLSFLPTLRELH 992
LP +L ELHL N I+ + E +L +S L L L +NQ++ + + + LP L L
Sbjct: 445 LPASLRELHLGTNVIEEV-TEGMLNHSHSLSVLVLSNNQLQEDRLAPRAWTDLPKLEVLD 503
Query: 993 LDNNKLSRVPAGLPDLKLLQVVYPHTNNITKV 1088
L +N+L+RVP+ LP + L+ + H N I ++
Sbjct: 504 LSHNRLARVPSSLP--RGLRRLTLHHNRIERI 533
Score = 113 bits (282), Expect = 7e-25
Identities = 95/302 (31%), Positives = 140/302 (46%), Gaps = 18/302 (5%)
Frame = +3
Query: 228 DDGLPML----NDEEASGADSTSGIPDLDALPPTFSAMCPFGCH-------CHLRVVQCS 374
D GL L N+ A + G+P+L L + + + G H L+ +
Sbjct: 305 DPGLATLYLAENEIAKIPAHAFRGLPNLQWLDLSKNKLDAQGLHPDAFKNLTRLKRLNLD 364
Query: 375 DLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI--SKIHAKAFS 548
L AVP + L L +N + L+ F+GL L L + N++ I AF
Sbjct: 365 GNSLAAVPA-LPASLQELKLNDNVLQGLQHSSFRGLSRLLTLEVEGNQLHDGNISPLAFQ 423
Query: 549 PLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 728
PL L L + +NHL IPP LP+SL EL + N I +V +G+ + +++ + + N L
Sbjct: 424 PLHSLLYLRLDRNHLRTIPPGLPASLRELHLGTNVIEEVTEGMLNHSHSLSVLVLSNNQL 483
Query: 729 ENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSK 905
+ P A+ L KL L +S +L +P LP L L L HN+I+ I
Sbjct: 484 QEDRLAPRAWTDLPKLEVLDLSHNRLARVPSSLPRGLRRLTLHHNRIERIPAYVFAHMRP 543
Query: 906 -LYRLGLGHNQIRMIENGSLSFL---PTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTN 1073
L L L HN +R SFL +L EL LD+N+L +P GL L+ LQV++ N
Sbjct: 544 GLELLRLSHNSLRTDGIRGASFLGLRSSLAELLLDHNQLRAIPRGLLGLRGLQVLHLSHN 603
Query: 1074 NI 1079
I
Sbjct: 604 EI 605
>ref|XP_542026.2| PREDICTED: similar to Fibromodulin precursor (FM) (Collagen-binding
59 kDa protein) (Keratan sulfate proteoglycan
fibromodulin) (KSPG fibromodulin) [Canis familiaris].
Length = 593
Score = 114 bits (286), Expect = 2e-25
Identities = 85/256 (33%), Positives = 127/256 (49%), Gaps = 6/256 (2%)
Frame = +3
Query: 330 CPFGCHC-HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVL 506
CP C C V C+ L L+ P I+ L LQNN + EL ++ L+ L L L
Sbjct: 58 CPPRCSCPRADTVDCNGLDLQVFPDNITRAAQHLSLQNNQLQELPYNELSRLRSLRTLNL 117
Query: 507 VNNKISK--IHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVF 680
NN IS + +AF L +LQ +Y++ N L P LP SL + N++ ++ F
Sbjct: 118 HNNLISSEGLPDEAFESLTQLQHIYVAHNKLSVAPQFLPRSLRVADLAANQVTEIFPLTF 177
Query: 681 SGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNELHLDH 857
+ + + N L N+G P AF G + + L +S +L+ +P LP +L LHL +
Sbjct: 178 GEKPALRSVYLHNNQLSNAGLPPDAFHGSEAVATLSLSSNRLSYLPPSLPPSLERLHLQN 237
Query: 858 NKIQAIELEDLLRYSKLYRLGLGHNQI--RMIENGSLSFLPTLRELHLDNNKLSRVPAGL 1031
N I + L R + L L L HNQ+ ++ + S L L L L +N+L+ VPAGL
Sbjct: 238 NLISKVPRGALSRQTHLRELYLQHNQLTDSGLDATTFSKLRHLEYLDLSHNQLASVPAGL 297
Query: 1032 PDLKLLQVVYPHTNNI 1079
P + L V++ N I
Sbjct: 298 P--RTLAVLHLGRNRI 311
Score = 112 bits (281), Expect = 9e-25
Identities = 83/244 (34%), Positives = 122/244 (50%), Gaps = 5/244 (2%)
Frame = +3
Query: 384 LKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK--IHAKAFSPLR 557
L P+ + + DL N ++E+ F L ++ L NN++S + AF
Sbjct: 148 LSVAPQFLPRSLRVADLAANQVTEIFPLTFGEKPALRSVYLHNNQLSNAGLPPDAFHGSE 207
Query: 558 KLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 737
+ L +S N L +PP+LP SL L + +N I KVP+G S ++ + + N L +S
Sbjct: 208 AVATLSLSSNRLSYLPPSLPPSLERLHLQNNLISKVPRGALSRQTHLRELYLQHNQLTDS 267
Query: 738 GFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 914
G + F L+ L YL +S +L +P LP TL LHL N+I+ +E L L
Sbjct: 268 GLDATTFSKLRHLEYLDLSHNQLASVPAGLPRTLAVLHLGRNRIRWVEAARLRGARGLRY 327
Query: 915 LGLGHNQI--RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKV 1088
L L HNQ+ + G+L L L LHL N L RVP LP +L +V PH N++T +
Sbjct: 328 LLLQHNQLGAEGLPAGALRPLRGLHTLHLYGNGLHRVPPALP-RRLRALVLPH-NHVTTL 385
Query: 1089 GVND 1100
G D
Sbjct: 386 GARD 389
Score = 101 bits (251), Expect = 3e-21
Identities = 67/203 (33%), Positives = 103/203 (50%), Gaps = 3/203 (1%)
Frame = +3
Query: 381 GLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI--SKIHAKAFSPL 554
GL VP + L L +N ++ L D GL+ L L L N++ +++H +AF PL
Sbjct: 360 GLHRVPPALPRRLRALVLPHNHVTTLGARDLAGLRGLAELNLAYNRLVSARVHRRAFRPL 419
Query: 555 RKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 734
R L+ L ++ N L +P LP SL LR+ N++R + + +GL + + + N L
Sbjct: 420 RALRSLDLAGNQLTRLPGGLPGSLRTLRLQRNQLRALEPELLAGLDQLRELSLAHNRLRI 479
Query: 735 SGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLY 911
PG + L+ L L +S +L+ +P DLPE L ELHL N+I + E L +L
Sbjct: 480 GDIGPGTWHELQALQVLDLSHNELSFVPPDLPEALEELHLQGNRIGHVGSEAFLSTPRLR 539
Query: 912 RLGLGHNQIRMIENGSLSFLPTL 980
L L N++ M +FL L
Sbjct: 540 ALFLRANRLHMTSIAPEAFLGLL 562
Score = 96.3 bits (238), Expect = 8e-20
Identities = 79/256 (30%), Positives = 125/256 (48%), Gaps = 5/256 (1%)
Frame = +3
Query: 351 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK- 527
HL + S L +VP + +L L N I + +G + L L+L +N++
Sbjct: 279 HLEYLDLSHNQLASVPAGLPRTLAVLHLGRNRIRWVEAARLRGARGLRYLLLQHNQLGAE 338
Query: 528 -IHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNC 704
+ A A PLR L L++ N L +PP LP L L + N + + +GLR +
Sbjct: 339 GLPAGALRPLRGLHTLHLYGNGLHRVPPALPRRLRALVLPHNHVTTLGARDLAGLRGLAE 398
Query: 705 IEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIEL 881
+ + N L ++ AF L+ L L ++ +LT +P LP +L L L N+++A+E
Sbjct: 399 LNLAYNRLVSARVHRRAFRPLRALRSLDLAGNQLTRLPGGLPGSLRTLRLQRNQLRALEP 458
Query: 882 EDLLRYSKLYRLGLGHNQIRM--IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQV 1055
E L +L L L HN++R+ I G+ L L+ L L +N+LS VP LP+ L+
Sbjct: 459 ELLAGLDQLRELSLAHNRLRIGDIGPGTWHELQALQVLDLSHNELSFVPPDLPE--ALEE 516
Query: 1056 VYPHTNNITKVGVNDF 1103
++ N I VG F
Sbjct: 517 LHLQGNRIGHVGSEAF 532
>ref|XP_539715.1| PREDICTED: similar to Keratocan precursor (KTN) (Keratan sulfate
proteoglycan keratocan) isoform 1 [Canis familiaris].
Length = 350
Score = 114 bits (285), Expect = 3e-25
Identities = 84/267 (31%), Positives = 134/267 (50%), Gaps = 7/267 (2%)
Frame = +3
Query: 330 CPFGCHC---HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYAL 500
CP C C + C + GLK +P I L L+NN I + + F+ L +
Sbjct: 42 CPRECFCPPSFPTALYCENRGLKEIPP-IPSRIWYLYLENNLIETIPEKPFENATQLRWI 100
Query: 501 VLVNNKISK--IHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKG 674
L NKI+ I A S L+KL L++ N L E+P LP SL +L++ N++ ++P+G
Sbjct: 101 NLNKNKITNYGIEKGALSQLKKLLFLFLEDNELEEVPSPLPRSLEQLQLARNKVSRIPQG 160
Query: 675 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNELHL 851
FS L N+ +++ N L ++ F+ F GLK L L +++ L +P LP +L L
Sbjct: 161 TFSNLENLTLLDLQHNKLLDNAFQRDTFKGLKNLMQLNMAKNALRNMPPRLPANTMQLFL 220
Query: 852 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-LPTLRELHLDNNKLSRVPAG 1028
D+N I+ I K+ L L HN++ S F + ++ +L L +N+L++VP
Sbjct: 221 DNNSIEGIPENYFNVIPKVAFLRLNHNKLSDAGLPSSGFDVSSILDLQLSHNQLTKVPRI 280
Query: 1029 LPDLKLLQVVYPHTNNITKVGVNDFCP 1109
L+ L + + N I V V+ CP
Sbjct: 281 SAHLQHLHLDH---NKIKNVNVSVICP 304
>ref|XP_852485.1| PREDICTED: similar to Keratocan precursor (KTN) (Keratan sulfate
proteoglycan keratocan) isoform 3 [Canis familiaris].
Length = 350
Score = 114 bits (285), Expect = 3e-25
Identities = 84/267 (31%), Positives = 134/267 (50%), Gaps = 7/267 (2%)
Frame = +3
Query: 330 CPFGCHC---HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYAL 500
CP C C + C + GLK +P I L L+NN I + + F+ L +
Sbjct: 42 CPRECFCPPSFPTALYCENRGLKEIPP-IPSRIWYLYLENNLIETIPEKPFENATQLRWI 100
Query: 501 VLVNNKISK--IHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKG 674
L NKI+ I A S L+KL L++ N L E+P LP SL +L++ N++ ++P+G
Sbjct: 101 NLNKNKITNYGIEKGALSQLKKLLFLFLEDNELEEVPSPLPRSLEQLQLARNKVSRIPQG 160
Query: 675 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNELHL 851
FS L N+ +++ N L ++ F+ F GLK L L +++ L +P LP +L L
Sbjct: 161 TFSNLENLTLLDLQHNKLLDNAFQRDTFKGLKNLMQLNMAKNALRNMPPRLPANTMQLFL 220
Query: 852 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-LPTLRELHLDNNKLSRVPAG 1028
D+N I+ I K+ L L HN++ S F + ++ +L L +N+L++VP
Sbjct: 221 DNNSIEGIPENYFNVIPKVAFLRLNHNKLSDAGLPSSGFDVSSILDLQLSHNQLTKVPRI 280
Query: 1029 LPDLKLLQVVYPHTNNITKVGVNDFCP 1109
L+ L + + N I V V+ CP
Sbjct: 281 SAHLQHLHLDH---NKIKNVNVSVICP 304
>ref|XP_540888.1| PREDICTED: similar to fibronectin leucine rich transmembrane protein
1 [Canis familiaris].
Length = 674
Score = 113 bits (282), Expect = 7e-25
Identities = 84/263 (31%), Positives = 120/263 (45%), Gaps = 4/263 (1%)
Frame = +3
Query: 321 SAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELR-KDDFKGLQHLYA 497
S CP C C + C+D GL ++P +I D T L LQNN I+ D K
Sbjct: 51 STTCPSVCRCDNGFIYCNDRGLTSIPADIPDDATTLYLQNNQINNAGIPQDLK------- 103
Query: 498 LVLVNNKISKIHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGV 677
+K++ +Q +Y+ +N L E P NLP SL EL + DN +R + +
Sbjct: 104 --------TKVN---------VQVIYLYENDLDEFPVNLPRSLRELHLQDNNVRTIARDS 146
Query: 678 FSGLRNMNCIEMGGNPLENSGFEPGAF-DGLKLNYLRISEAKLTGIPKDLPETLNELHLD 854
+ + + + + N + E AF D +L L +S L+ IP LP TL EL LD
Sbjct: 147 LARIPLLEKLHLDDNSVSTVSIEEDAFADSKQLKLLFLSRNHLSSIPSGLPRTLEELRLD 206
Query: 855 HNKIQAIELEDLLRYSKLYRLGLGHNQI--RMIENGSLSFLPTLRELHLDNNKLSRVPAG 1028
N+I I L + L RL L N + + I + + S L L EL L N L+ P
Sbjct: 207 DNRISTIPLHAFKGLNSLRRLVLDGNLLANQRIADDTFSRLQNLTELSLVRNSLAAPPLN 266
Query: 1029 LPDLKLLQVVYPHTNNITKVGVN 1097
LP LQ +Y N I+ + N
Sbjct: 267 LPSAH-LQKLYLQDNAISHIPYN 288
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 64,933,603
Number of extensions: 1922678
Number of successful extensions: 13777
Number of sequences better than 1.0e-05: 125
Number of HSP's gapped: 12819
Number of HSP's successfully gapped: 230
Length of query: 590
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 482
Effective length of database: 15,274,216
Effective search space: 7362172112
Effective search space used: 7362172112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003295
(1771 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001702.1| biglycan preproprotein [Homo sapiens]. 676 0.0
Alignment gi|NP_060150.4| asporin isoform 1 preproprotein [Homo sapiens]. 394 e-109
Alignment gi|NP_598010.1| decorin isoform a preproprotein [Homo sapiens]. 387 e-107
Alignment gi|NP_001911.1| decorin isoform a preproprotein [Homo sapiens]. 387 e-107
Alignment gi|NP_598011.1| decorin isoform b precursor [Homo sapiens]. 214 2e-55
Alignment gi|NP_001180264.1| asporin isoform 2 preproprotein [Homo sapien... 211 2e-54
Alignment gi|NP_598012.1| decorin isoform c precursor [Homo sapiens]. 172 7e-43
Alignment gi|NP_958505.1| prolargin precursor [Homo sapiens]. 137 4e-32
Alignment gi|NP_002716.1| prolargin precursor [Homo sapiens]. 137 4e-32
Alignment gi|NP_001184225.1| extracellular matrix protein 2 isoform 3 pre... 129 7e-30
>ref|NP_001702.1| biglycan preproprotein [Homo sapiens].
Length = 368
Score = 676 bits (1745), Expect = 0.0
Identities = 330/351 (94%), Positives = 341/351 (97%)
Frame = +3
Query: 195 FEQKAFWDFTLDDGLPMLNDEEASGADSTSGIPDLDALPPTFSAMCPFGCHCHLRVVQCS 374
FEQ+ FWDFTLDDG M+NDEEASGAD TSG+ D D++ PT+SAMCPFGCHCHLRVVQCS
Sbjct: 19 FEQRGFWDFTLDDGPFMMNDEEASGAD-TSGVLDPDSVTPTYSAMCPFGCHCHLRVVQCS 77
Query: 375 DLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPL 554
DLGLK+VPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH KAFSPL
Sbjct: 78 DLGLKSVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL 137
Query: 555 RKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 734
RKLQKLYISKNHLVEIPPNLPSSL ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN
Sbjct: 138 RKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 197
Query: 735 SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 914
SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR
Sbjct: 198 SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 257
Query: 915 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKVGV 1094
LGLGHNQIRMIENGSLSFLPTLRELHLDNNKL+RVP+GLPDLKLLQVVY H+NNITKVGV
Sbjct: 258 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLARVPSGLPDLKLLQVVYLHSNNITKVGV 317
Query: 1095 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 1247
NDFCP+GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK
Sbjct: 318 NDFCPMGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 368
>ref|NP_060150.4| asporin isoform 1 preproprotein [Homo sapiens].
Length = 379
Score = 394 bits (1013), Expect = e-109
Identities = 180/305 (59%), Positives = 241/305 (79%)
Frame = +3
Query: 327 MCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVL 506
MCPFGC C+ RVV CSDLGL +VP I DT +LDLQNN I E++++DFKGL LY L+L
Sbjct: 73 MCPFGCQCYSRVVHCSDLGLTSVPTNIPFDTRMLDLQNNKIKEIKENDFKGLTSLYGLIL 132
Query: 507 VNNKISKIHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSG 686
NNK++KIH KAF +KL++LY+S N L EIP NLP SLAELRIH+N+++K+ K F G
Sbjct: 133 NNNKLTKIHPKAFLTTKKLRRLYLSHNQLSEIPLNLPKSLAELRIHENKVKKIQKDTFKG 192
Query: 687 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKI 866
+ ++ +EM NPL+N+G EPGAF+G+ + ++RI+EAKLT +PK LP TL ELHLD+NKI
Sbjct: 193 MNALHVLEMSANPLDNNGIEPGAFEGVTVFHIRIAEAKLTSVPKGLPPTLLELHLDYNKI 252
Query: 867 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKL 1046
+ELED RY +L RLGLG+N+I IENGSL+ +P +RE+HL+NNKL ++P+GLP+LK
Sbjct: 253 STVELEDFKRYKELQRLGLGNNKITDIENGSLANIPRVREIHLENNKLKKIPSGLPELKY 312
Query: 1047 LQVVYPHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 1226
LQ+++ H+N+I +VGVNDFCP +K++ Y+ ISLFNNPV YWE+QPATFRCV R+++
Sbjct: 313 LQIIFLHSNSIARVGVNDFCPTVPKMKKSLYSAISLFNNPVKYWEMQPATFRCVLSRMSV 372
Query: 1227 QFGNY 1241
Q GN+
Sbjct: 373 QLGNF 377
>ref|NP_598010.1| decorin isoform a preproprotein [Homo sapiens].
Length = 359
Score = 387 bits (993), Expect = e-107
Identities = 194/351 (55%), Positives = 249/351 (70%), Gaps = 1/351 (0%)
Frame = +3
Query: 195 FEQKAFWDFTLDDGLPMLNDEEASGADSTSGIPDLDALPPTFSAMCPFGCHCHLRVVQCS 374
F+Q+ +DF L+D EASG +PD P+ +CPF C CHLRVVQCS
Sbjct: 19 FQQRGLFDFMLED--------EASGIGPE--VPDDRDFEPSLGPVCPFRCQCHLRVVQCS 68
Query: 375 DLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPL 554
DLGL VPK++ PDTTLLDLQNN I+E++ DFK L++L+AL+LVNNKISK+ AF+PL
Sbjct: 69 DLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHALILVNNKISKVSPGAFTPL 128
Query: 555 RKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 734
KL++LY+SKN L E+P +P +L ELR H+N I KV K F+GL M IE+G NPL++
Sbjct: 129 VKLERLYLSKNQLKELPEKMPKTLQELRAHENEITKVRKVTFNGLNQMIVIELGTNPLKS 188
Query: 735 SGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLY 911
SG E GAF G+ KL+Y+RI++ +T IP+ LP +L ELHLD NKI ++ L + L
Sbjct: 189 SGIENGAFQGMKKLSYIRIADTNITSIPQGLPPSLTELHLDGNKISRVDAASLKGLNNLA 248
Query: 912 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKVG 1091
+LGL N I ++NGSL+ P LRELHLDNNKL+RVP GL + K +QVVY H NNI+ VG
Sbjct: 249 KLGLSFNSISAVDNGSLANTPHLRELHLDNNKLTRVPGGLAEHKYIQVVYLHNNNISVVG 308
Query: 1092 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 1244
+DFCP G K+A Y+G+SLF+NPV YWE+QP+TFRCV R AIQ GNYK
Sbjct: 309 SSDFCPPGHNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRSAIQLGNYK 359
>ref|NP_001911.1| decorin isoform a preproprotein [Homo sapiens].
Length = 359
Score = 387 bits (993), Expect = e-107
Identities = 194/351 (55%), Positives = 249/351 (70%), Gaps = 1/351 (0%)
Frame = +3
Query: 195 FEQKAFWDFTLDDGLPMLNDEEASGADSTSGIPDLDALPPTFSAMCPFGCHCHLRVVQCS 374
F+Q+ +DF L+D EASG +PD P+ +CPF C CHLRVVQCS
Sbjct: 19 FQQRGLFDFMLED--------EASGIGPE--VPDDRDFEPSLGPVCPFRCQCHLRVVQCS 68
Query: 375 DLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPL 554
DLGL VPK++ PDTTLLDLQNN I+E++ DFK L++L+AL+LVNNKISK+ AF+PL
Sbjct: 69 DLGLDKVPKDLPPDTTLLDLQNNKITEIKDGDFKNLKNLHALILVNNKISKVSPGAFTPL 128
Query: 555 RKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 734
KL++LY+SKN L E+P +P +L ELR H+N I KV K F+GL M IE+G NPL++
Sbjct: 129 VKLERLYLSKNQLKELPEKMPKTLQELRAHENEITKVRKVTFNGLNQMIVIELGTNPLKS 188
Query: 735 SGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLY 911
SG E GAF G+ KL+Y+RI++ +T IP+ LP +L ELHLD NKI ++ L + L
Sbjct: 189 SGIENGAFQGMKKLSYIRIADTNITSIPQGLPPSLTELHLDGNKISRVDAASLKGLNNLA 248
Query: 912 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKVG 1091
+LGL N I ++NGSL+ P LRELHLDNNKL+RVP GL + K +QVVY H NNI+ VG
Sbjct: 249 KLGLSFNSISAVDNGSLANTPHLRELHLDNNKLTRVPGGLAEHKYIQVVYLHNNNISVVG 308
Query: 1092 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 1244
+DFCP G K+A Y+G+SLF+NPV YWE+QP+TFRCV R AIQ GNYK
Sbjct: 309 SSDFCPPGHNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRSAIQLGNYK 359
>ref|NP_598011.1| decorin isoform b precursor [Homo sapiens].
Length = 250
Score = 214 bits (546), Expect = 2e-55
Identities = 106/189 (56%), Positives = 137/189 (72%), Gaps = 3/189 (1%)
Frame = +3
Query: 687 LRNMNC--IEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNELHLDH 857
LR + C +E+G NPL++SG E GAF G+K L+Y+RI++ +T IP+ LP +L ELHLD
Sbjct: 62 LRVVQCSDLELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITSIPQGLPPSLTELHLDG 121
Query: 858 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD 1037
NKI ++ L + L +LGL N I ++NGSL+ P LRELHLDNNKL+RVP GL +
Sbjct: 122 NKISRVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLDNNKLTRVPGGLAE 181
Query: 1038 LKLLQVVYPHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 1217
K +QVVY H NNI+ VG +DFCP G K+A Y+G+SLF+NPV YWE+QP+TFRCV R
Sbjct: 182 HKYIQVVYLHNNNISVVGSSDFCPPGHNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 241
Query: 1218 LAIQFGNYK 1244
AIQ GNYK
Sbjct: 242 SAIQLGNYK 250
Score = 80.1 bits (196), Expect = 6e-15
Identities = 63/227 (27%), Positives = 97/227 (42%), Gaps = 39/227 (17%)
Frame = +3
Query: 195 FEQKAFWDFTLDDGLPMLNDEEASGADSTSGIPDLDALPPTFSAMCPFGCHCHLRVVQCS 374
F+Q+ +DF L+D EASG +PD P+ +CPF C CHLRVVQCS
Sbjct: 19 FQQRGLFDFMLED--------EASGIGPE--VPDDRDFEPSLGPVCPFRCQCHLRVVQCS 68
Query: 375 DL------------------GLK-------------AVPKEISPDTTLLDLQNNDISELR 461
DL G+K ++P+ + P T L L N IS +
Sbjct: 69 DLELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITSIPQGLPPSLTELHLDGNKISRVD 128
Query: 462 KDDFKGLQHLYALVLVNNKISKIHAKAFSPLRKLQKLYISKNHLVEIPPNLPSS--LAEL 635
KGL +L L L N IS + + + L++L++ N L +P L + +
Sbjct: 129 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLDNNKLTRVPGGLAEHKYIQVV 188
Query: 636 RIHDNRIRKV------PKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 758
+H+N I V P G + + + + + NP++ +P F
Sbjct: 189 YLHNNNISVVGSSDFCPPGHNTKKASYSGVSLFSNPVQYWEIQPSTF 235
>ref|NP_001180264.1| asporin isoform 2 preproprotein [Homo sapiens].
Length = 242
Score = 211 bits (536), Expect = 2e-54
Identities = 96/165 (58%), Positives = 128/165 (77%)
Frame = +3
Query: 327 MCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVL 506
MCPFGC C+ RVV CSDLGL +VP I DT +LDLQNN I E++++DFKGL LY L+L
Sbjct: 73 MCPFGCQCYSRVVHCSDLGLTSVPTNIPFDTRMLDLQNNKIKEIKENDFKGLTSLYGLIL 132
Query: 507 VNNKISKIHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSG 686
NNK++KIH KAF +KL++LY+S N L EIP NLP SLAELRIH+N+++K+ K F G
Sbjct: 133 NNNKLTKIHPKAFLTTKKLRRLYLSHNQLSEIPLNLPKSLAELRIHENKVKKIQKDTFKG 192
Query: 687 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD 821
+ ++ +EM NPL+N+G EPGAF+G+ + ++RI+EAKLT +PKD
Sbjct: 193 MNALHVLEMSANPLDNNGIEPGAFEGVTVFHIRIAEAKLTSVPKD 237
Score = 56.2 bits (134), Expect = 9e-08
Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
Frame = +3
Query: 591 LVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF-DGL 767
L +P N+P L + +N+I+++ + F GL ++ + + N L P AF
Sbjct: 92 LTSVPTNIPFDTRMLDLQNNKIKEIKENDFKGLTSLYGLILNNNKLTK--IHPKAFLTTK 149
Query: 768 KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI--R 941
KL L +S +L+ IP +LP++L EL + NK++ I+ + + L+ L + N +
Sbjct: 150 KLRRLYLSHNQLSEIPLNLPKSLAELRIHENKVKKIQKDTFKGMNALHVLEMSANPLDNN 209
Query: 942 MIENGSLSFLPTLRELHLDNNKLSRVP 1022
IE G+ + T+ + + KL+ VP
Sbjct: 210 GIEPGAFEGV-TVFHIRIAEAKLTSVP 235
>ref|NP_598012.1| decorin isoform c precursor [Homo sapiens].
Length = 212
Score = 172 bits (437), Expect = 7e-43
Identities = 83/141 (58%), Positives = 102/141 (72%)
Frame = +3
Query: 822 LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 1001
LP +L ELHLD NKI ++ L + L +LGL N I ++NGSL+ P LRELHLDN
Sbjct: 72 LPPSLTELHLDGNKISRVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLDN 131
Query: 1002 NKLSRVPAGLPDLKLLQVVYPHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 1181
NKL+RVP GL + K +QVVY H NNI+ VG +DFCP G K+A Y+G+SLF+NPV YWE
Sbjct: 132 NKLTRVPGGLAEHKYIQVVYLHNNNISVVGSSDFCPPGHNTKKASYSGVSLFSNPVQYWE 191
Query: 1182 VQPATFRCVTDRLAIQFGNYK 1244
+QP+TFRCV R AIQ GNYK
Sbjct: 192 IQPSTFRCVYVRSAIQLGNYK 212
Score = 87.8 bits (216), Expect = 3e-17
Identities = 62/196 (31%), Positives = 91/196 (46%), Gaps = 8/196 (4%)
Frame = +3
Query: 195 FEQKAFWDFTLDDGLPMLNDEEASGADSTSGIPDLDALPPTFSAMCPFGCHCHLRVVQCS 374
F+Q+ +DF L+D EASG +PD P+ +CPF C CHLRVVQCS
Sbjct: 19 FQQRGLFDFMLED--------EASGIGPE--VPDDRDFEPSLGPVCPFRCQCHLRVVQCS 68
Query: 375 DLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPL 554
DLGL P T L L N IS + KGL +L L L N IS + + +
Sbjct: 69 DLGL-------PPSLTELHLDGNKISRVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 121
Query: 555 RKLQKLYISKNHLVEIPPNLPSS--LAELRIHDNRIRKV------PKGVFSGLRNMNCIE 710
L++L++ N L +P L + + +H+N I V P G + + + +
Sbjct: 122 PHLRELHLDNNKLTRVPGGLAEHKYIQVVYLHNNNISVVGSSDFCPPGHNTKKASYSGVS 181
Query: 711 MGGNPLENSGFEPGAF 758
+ NP++ +P F
Sbjct: 182 LFSNPVQYWEIQPSTF 197
>ref|NP_958505.1| prolargin precursor [Homo sapiens].
Length = 382
Score = 137 bits (344), Expect = 4e-32
Identities = 96/286 (33%), Positives = 145/286 (50%), Gaps = 6/286 (2%)
Frame = +3
Query: 270 ADSTSGIPDLDALPPTFSAMCPFGCHC---HLRVVQCSDLGLKAVPKEISPDTTLLDLQN 440
A+ T P L PP+ CP C+C + C L+ VP I P L LQN
Sbjct: 53 AEPTDLPPPLPPGPPSIFPDCPRECYCPPDFPSALYCDSRNLRKVPV-IPPRIHYLYLQN 111
Query: 441 NDISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPLRKLQKLYISKNHLVEIPPNLPS 620
N I+EL + F+ L + L NN+I KI + L L LY+ KN L E+P LP
Sbjct: 112 NFITELPVESFQNATGLRWINLDNNRIRKIDQRVLEKLPGLVFLYMEKNQLEEVPSALPR 171
Query: 621 SLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEA 797
+L +LR+ N I ++P GVFS L N+ +++ N L + F+P F GLK L L ++
Sbjct: 172 NLEQLRLSQNHISRIPPGVFSKLENLLLLDLQHNRLSDGVFKPDTFHGLKNLMQLNLAHN 231
Query: 798 KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI--RMIENGSLSFL 971
L +P +P +++L+LD NKI+ I + L + L +N++ R + S + +
Sbjct: 232 ILRKMPPRVPTAIHQLYLDSNKIETIPNGYFKSFPNLAFIRLNYNKLTDRGLPKNSFN-I 290
Query: 972 PTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKVGVNDFCP 1109
L LHL +N++S VPA L+ +Y + N+I K+ CP
Sbjct: 291 SNLLVLHLSHNRISSVPA---INNRLEHLYLNNNSIEKINGTQICP 333
>ref|NP_002716.1| prolargin precursor [Homo sapiens].
Length = 382
Score = 137 bits (344), Expect = 4e-32
Identities = 96/286 (33%), Positives = 145/286 (50%), Gaps = 6/286 (2%)
Frame = +3
Query: 270 ADSTSGIPDLDALPPTFSAMCPFGCHC---HLRVVQCSDLGLKAVPKEISPDTTLLDLQN 440
A+ T P L PP+ CP C+C + C L+ VP I P L LQN
Sbjct: 53 AEPTDLPPPLPPGPPSIFPDCPRECYCPPDFPSALYCDSRNLRKVPV-IPPRIHYLYLQN 111
Query: 441 NDISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPLRKLQKLYISKNHLVEIPPNLPS 620
N I+EL + F+ L + L NN+I KI + L L LY+ KN L E+P LP
Sbjct: 112 NFITELPVESFQNATGLRWINLDNNRIRKIDQRVLEKLPGLVFLYMEKNQLEEVPSALPR 171
Query: 621 SLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEA 797
+L +LR+ N I ++P GVFS L N+ +++ N L + F+P F GLK L L ++
Sbjct: 172 NLEQLRLSQNHISRIPPGVFSKLENLLLLDLQHNRLSDGVFKPDTFHGLKNLMQLNLAHN 231
Query: 798 KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI--RMIENGSLSFL 971
L +P +P +++L+LD NKI+ I + L + L +N++ R + S + +
Sbjct: 232 ILRKMPPRVPTAIHQLYLDSNKIETIPNGYFKSFPNLAFIRLNYNKLTDRGLPKNSFN-I 290
Query: 972 PTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKVGVNDFCP 1109
L LHL +N++S VPA L+ +Y + N+I K+ CP
Sbjct: 291 SNLLVLHLSHNRISSVPA---INNRLEHLYLNNNSIEKINGTQICP 333
>ref|NP_001184225.1| extracellular matrix protein 2 isoform 3 precursor [Homo sapiens].
Length = 643
Score = 129 bits (325), Expect = 7e-30
Identities = 83/247 (33%), Positives = 131/247 (53%), Gaps = 5/247 (2%)
Frame = +3
Query: 309 PPTFSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQH 488
PP + P GC R + C + L +P +P T L+L N I+ + + F GL +
Sbjct: 287 PPRGTLRLPSGCSLSYRTISCINAMLTQIPPLTAPQITSLELTGNSIASIPDEAFNGLPN 346
Query: 489 LYALVLVNNKI--SKIHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRK 662
L L L N I S I KAF L+KL +L + N+L++IP LPS+L EL++++N ++
Sbjct: 347 LERLDLSKNNITSSGIGPKAFKLLKKLMRLNMDGNNLIQIPSQLPSTLEELKVNENNLQA 406
Query: 663 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLN 839
+ + S L + +E+ GN L + P AF LK L YLR+ + K IP+ LP ++
Sbjct: 407 IDEESLSDLNQLVTLELEGNNLSEANVNPLAFKPLKSLAYLRLGKNKFRIIPQGLPGSIE 466
Query: 840 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL--PTLRELHLDNNKLS 1013
EL+L++N+I+ I K+ + L +N+I L+++ L + L NKL
Sbjct: 467 ELYLENNQIEEITEICFNHTRKINVIVLRYNKIEENRIAPLAWINQENLESIDLSYNKLY 526
Query: 1014 RVPAGLP 1034
VP+ LP
Sbjct: 527 HVPSYLP 533
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 63,226,448
Number of extensions: 1860320
Number of successful extensions: 13971
Number of sequences better than 1.0e-05: 167
Number of HSP's gapped: 12807
Number of HSP's successfully gapped: 316
Length of query: 590
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 482
Effective length of database: 14,737,052
Effective search space: 7103259064
Effective search space used: 7103259064
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003295
(1771 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031568.2| biglycan precursor [Mus musculus]. 694 0.0
Alignment gi|NP_001165952.1| asporin preproprotein [Mus musculus]. 389 e-108
Alignment gi|NP_079987.2| asporin preproprotein [Mus musculus]. 389 e-108
Alignment gi|NP_001177380.1| decorin preproprotein [Mus musculus]. 370 e-102
Alignment gi|NP_031859.1| decorin preproprotein [Mus musculus]. 370 e-102
Alignment gi|NP_473418.3| prolargin precursor [Mus musculus]. 135 8e-32
Alignment gi|NP_032550.2| lumican precursor [Mus musculus]. 129 7e-30
Alignment gi|NP_001012324.1| extracellular matrix protein 2 precursor [Mu... 124 2e-28
Alignment gi|NP_958813.1| fibronectin leucine rich transmembrane protein ... 114 2e-25
Alignment gi|NP_766462.2| podocan precursor [Mus musculus]. 113 4e-25
>ref|NP_031568.2| biglycan precursor [Mus musculus].
Length = 369
Score = 694 bits (1790), Expect = 0.0
Identities = 335/351 (95%), Positives = 344/351 (98%)
Frame = +3
Query: 195 FEQKAFWDFTLDDGLPMLNDEEASGADSTSGIPDLDALPPTFSAMCPFGCHCHLRVVQCS 374
FEQK FWDFTLDDGL M+NDEEASG+D+TSG+PDLD++ PTFSAMCPFGCHCHLRVVQCS
Sbjct: 19 FEQKGFWDFTLDDGLLMMNDEEASGSDTTSGVPDLDSVTPTFSAMCPFGCHCHLRVVQCS 78
Query: 375 DLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPL 554
DLGLK VPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH KAFSPL
Sbjct: 79 DLGLKTVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL 138
Query: 555 RKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 734
RKLQKLYISKNHLVEIPPNLPSSL ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN
Sbjct: 139 RKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 198
Query: 735 SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 914
SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR
Sbjct: 199 SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 258
Query: 915 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKVGV 1094
LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVY H+NNITKVG+
Sbjct: 259 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHSNNITKVGI 318
Query: 1095 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 1247
NDFCP+GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK
Sbjct: 319 NDFCPMGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 369
>ref|NP_001165952.1| asporin preproprotein [Mus musculus].
Length = 373
Score = 389 bits (1000), Expect = e-108
Identities = 185/336 (55%), Positives = 248/336 (73%), Gaps = 4/336 (1%)
Frame = +3
Query: 252 DEEASGADSTSGIPDLDALPPTFS----AMCPFGCHCHLRVVQCSDLGLKAVPKEISPDT 419
D++ + D S P + + P F CPFGC C+ RVV CSDLGL +VP I DT
Sbjct: 38 DDDDNDDDDNSLFPTKEPVNPFFPFDLFPTCPFGCQCYSRVVHCSDLGLTSVPNNIPFDT 97
Query: 420 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPLRKLQKLYISKNHLVE 599
++DLQNN I E++++DFKGL LYAL+L NNK++KIH K F +KL++LY+S N L E
Sbjct: 98 RMVDLQNNKIKEIKENDFKGLTSLYALILNNNKLTKIHPKTFLTTKKLRRLYLSHNQLSE 157
Query: 600 IPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNY 779
IP NLP SLAELRIHDN+++K+ K F G+ ++ +EM NPLEN+G EPGAF+G+ + +
Sbjct: 158 IPLNLPKSLAELRIHDNKVKKIQKDTFKGMNALHVLEMSANPLENNGIEPGAFEGVTVFH 217
Query: 780 LRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 959
+RI+EAKLT IPK LP TL ELHLD NKI +ELEDL RY +L RLGLG+N+I IENG+
Sbjct: 218 IRIAEAKLTSIPKGLPPTLLELHLDFNKISTVELEDLKRYRELQRLGLGNNRITDIENGT 277
Query: 960 LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKVGVNDFCPVGFGVKRAYY 1139
+ +P +RE+HL++NKL ++P+GL +LK LQ+++ H N+I KVGVNDFCP +K++ Y
Sbjct: 278 FANIPRVREIHLEHNKLKKIPSGLQELKYLQIIFLHYNSIAKVGVNDFCPTVPKMKKSLY 337
Query: 1140 NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 1247
+ ISLFNNP+ YWE+QPATFRCV R+++Q GN K
Sbjct: 338 SAISLFNNPMKYWEIQPATFRCVLGRMSVQLGNVGK 373
>ref|NP_079987.2| asporin preproprotein [Mus musculus].
Length = 373
Score = 389 bits (1000), Expect = e-108
Identities = 185/336 (55%), Positives = 248/336 (73%), Gaps = 4/336 (1%)
Frame = +3
Query: 252 DEEASGADSTSGIPDLDALPPTFS----AMCPFGCHCHLRVVQCSDLGLKAVPKEISPDT 419
D++ + D S P + + P F CPFGC C+ RVV CSDLGL +VP I DT
Sbjct: 38 DDDDNDDDDNSLFPTKEPVNPFFPFDLFPTCPFGCQCYSRVVHCSDLGLTSVPNNIPFDT 97
Query: 420 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPLRKLQKLYISKNHLVE 599
++DLQNN I E++++DFKGL LYAL+L NNK++KIH K F +KL++LY+S N L E
Sbjct: 98 RMVDLQNNKIKEIKENDFKGLTSLYALILNNNKLTKIHPKTFLTTKKLRRLYLSHNQLSE 157
Query: 600 IPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNY 779
IP NLP SLAELRIHDN+++K+ K F G+ ++ +EM NPLEN+G EPGAF+G+ + +
Sbjct: 158 IPLNLPKSLAELRIHDNKVKKIQKDTFKGMNALHVLEMSANPLENNGIEPGAFEGVTVFH 217
Query: 780 LRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 959
+RI+EAKLT IPK LP TL ELHLD NKI +ELEDL RY +L RLGLG+N+I IENG+
Sbjct: 218 IRIAEAKLTSIPKGLPPTLLELHLDFNKISTVELEDLKRYRELQRLGLGNNRITDIENGT 277
Query: 960 LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKVGVNDFCPVGFGVKRAYY 1139
+ +P +RE+HL++NKL ++P+GL +LK LQ+++ H N+I KVGVNDFCP +K++ Y
Sbjct: 278 FANIPRVREIHLEHNKLKKIPSGLQELKYLQIIFLHYNSIAKVGVNDFCPTVPKMKKSLY 337
Query: 1140 NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 1247
+ ISLFNNP+ YWE+QPATFRCV R+++Q GN K
Sbjct: 338 SAISLFNNPMKYWEIQPATFRCVLGRMSVQLGNVGK 373
>ref|NP_001177380.1| decorin preproprotein [Mus musculus].
Length = 354
Score = 370 bits (949), Expect = e-102
Identities = 192/351 (54%), Positives = 240/351 (68%), Gaps = 1/351 (0%)
Frame = +3
Query: 195 FEQKAFWDFTLDDGLPMLNDEEASGADSTSGIPDLDALPPTFSAMCPFGCHCHLRVVQCS 374
FEQ+ +DF L+D SGI D P S MCP+ C CHLRVVQCS
Sbjct: 19 FEQRGLFDFMLED--------------EASGIIPYDPDNPLIS-MCPYRCQCHLRVVQCS 63
Query: 375 DLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPL 554
DLGL VP + PDTTLLDLQNN I+E+++ FK L+ L+ L+LVNNKISKI +AF PL
Sbjct: 64 DLGLDKVPWDFPPDTTLLDLQNNKITEIKEGAFKNLKDLHTLILVNNKISKISPEAFKPL 123
Query: 555 RKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 734
KL++LY+SKN L E+P +P +L ELR+H+N I K+ K F+GL N+ IE+GGNPL+N
Sbjct: 124 VKLERLYLSKNQLKELPEKMPRTLQELRVHENEITKLRKSDFNGLNNVLVIELGGNPLKN 183
Query: 735 SGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLY 911
SG E GAF GLK L+Y+RIS+ +T IP+ LP +L E+HLD NKI ++ L L
Sbjct: 184 SGIENGAFQGLKSLSYIRISDTNITAIPQGLPTSLTEVHLDGNKITKVDAPSLKGLINLS 243
Query: 912 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKVG 1091
+LGL N I ++ENGSL+ +P LRELHLDNNKL RVPAGL K +QVVY H NNI+ VG
Sbjct: 244 KLGLSFNSITVMENGSLANVPHLRELHLDNNKLLRVPAGLAQHKYIQVVYLHNNNISAVG 303
Query: 1092 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 1244
NDFC G ++A Y+ +SL+ NPV YWE+ P TFRCV R AIQ GNYK
Sbjct: 304 QNDFCRAGHPSRKASYSAVSLYGNPVRYWEIFPNTFRCVYVRSAIQLGNYK 354
>ref|NP_031859.1| decorin preproprotein [Mus musculus].
Length = 354
Score = 370 bits (949), Expect = e-102
Identities = 192/351 (54%), Positives = 240/351 (68%), Gaps = 1/351 (0%)
Frame = +3
Query: 195 FEQKAFWDFTLDDGLPMLNDEEASGADSTSGIPDLDALPPTFSAMCPFGCHCHLRVVQCS 374
FEQ+ +DF L+D SGI D P S MCP+ C CHLRVVQCS
Sbjct: 19 FEQRGLFDFMLED--------------EASGIIPYDPDNPLIS-MCPYRCQCHLRVVQCS 63
Query: 375 DLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPL 554
DLGL VP + PDTTLLDLQNN I+E+++ FK L+ L+ L+LVNNKISKI +AF PL
Sbjct: 64 DLGLDKVPWDFPPDTTLLDLQNNKITEIKEGAFKNLKDLHTLILVNNKISKISPEAFKPL 123
Query: 555 RKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 734
KL++LY+SKN L E+P +P +L ELR+H+N I K+ K F+GL N+ IE+GGNPL+N
Sbjct: 124 VKLERLYLSKNQLKELPEKMPRTLQELRVHENEITKLRKSDFNGLNNVLVIELGGNPLKN 183
Query: 735 SGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLY 911
SG E GAF GLK L+Y+RIS+ +T IP+ LP +L E+HLD NKI ++ L L
Sbjct: 184 SGIENGAFQGLKSLSYIRISDTNITAIPQGLPTSLTEVHLDGNKITKVDAPSLKGLINLS 243
Query: 912 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKVG 1091
+LGL N I ++ENGSL+ +P LRELHLDNNKL RVPAGL K +QVVY H NNI+ VG
Sbjct: 244 KLGLSFNSITVMENGSLANVPHLRELHLDNNKLLRVPAGLAQHKYIQVVYLHNNNISAVG 303
Query: 1092 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 1244
NDFC G ++A Y+ +SL+ NPV YWE+ P TFRCV R AIQ GNYK
Sbjct: 304 QNDFCRAGHPSRKASYSAVSLYGNPVRYWEIFPNTFRCVYVRSAIQLGNYK 354
>ref|NP_473418.3| prolargin precursor [Mus musculus].
Length = 378
Score = 135 bits (341), Expect = 8e-32
Identities = 94/286 (32%), Positives = 145/286 (50%), Gaps = 6/286 (2%)
Frame = +3
Query: 270 ADSTSGIPDLDALPPTFSAMCPFGCHC---HLRVVQCSDLGLKAVPKEISPDTTLLDLQN 440
A+ T P L PP+ CP C+C + C L+ VP I P L LQN
Sbjct: 49 AEPTDLPPPLPPGPPSVFPDCPRECYCPPDFPSALYCDSRNLRRVPV-IPPRIHYLYLQN 107
Query: 441 NDISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPLRKLQKLYISKNHLVEIPPNLPS 620
N I+EL + F+ L + L NN+I K+ + L L LY+ KN L E+P LP
Sbjct: 108 NFITELPLESFQNATGLRWVNLDNNRIRKVDQRVLGKLPSLAFLYMEKNQLEEVPSALPR 167
Query: 621 SLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEA 797
+L +LR+ N I ++P GVFS L N+ +++ N L + F+ F GLK L L ++
Sbjct: 168 NLEQLRLSQNLISRIPPGVFSKLENLLLLDLQHNRLSDGVFKADTFQGLKNLMQLNLAHN 227
Query: 798 KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI--RMIENGSLSFL 971
L +P +P+ +++L+LD NKI+ I + L + + +N++ R + S + +
Sbjct: 228 ILRKMPPKVPQAIHQLYLDSNKIETIPNGYFKDFPNLAFIRMNYNKLSDRGLPKNSFN-I 286
Query: 972 PTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKVGVNDFCP 1109
L LHL +NK+S VPA L+ +Y + N+I K+ CP
Sbjct: 287 SNLLVLHLSHNKISNVPA---ISNKLEHLYLNNNSIEKINGTQICP 329
>ref|NP_032550.2| lumican precursor [Mus musculus].
Length = 338
Score = 129 bits (324), Expect = 7e-30
Identities = 98/297 (32%), Positives = 152/297 (51%), Gaps = 4/297 (1%)
Frame = +3
Query: 330 CPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLV 509
CP H + + C DL LK+VP + P L L+NN I + + F+ + L L+L
Sbjct: 43 CP---HSYPTAMYCDDLKLKSVPM-VPPGIKYLYLRNNQIDHIDEKAFENVTDLQWLILD 98
Query: 510 NNKI--SKIHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFS 683
+N + SKI K FS L++L+KL+I+ N+L E LP SL +L++ +N+I K+ G F
Sbjct: 99 HNLLENSKIKGKVFSKLKQLKKLHINYNNLTESVGPLPKSLQDLQLTNNKISKL--GSFD 156
Query: 684 GLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNELHLDHN 860
GL N+ I + N L+ + GLK L YL +S +++ +P LP +L L+LD+N
Sbjct: 157 GLVNLTFIYLQHNQLKEDAVS-ASLKGLKSLEYLDLSFNQMSKLPAGLPTSLLTLYLDNN 215
Query: 861 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-LPTLRELHLDNNKLSRVPAGLPD 1037
KI I E R++ L L L HN++ SF + +L EL L NKL +P +
Sbjct: 216 KISNIPDEYFKRFTGLQYLRLSHNELADSGVPGNSFNISSLLELDLSYNKLKSIPTVNEN 275
Query: 1038 LKLLQVVYPHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 1208
L+ Y N + K V FC + + + + L NP+ + P + C+
Sbjct: 276 ---LENYYLEVNELEKFDVKSFCKILGPLSYSKIKHLRLDGNPLTQSSLPPDMYECL 329
>ref|NP_001012324.1| extracellular matrix protein 2 precursor [Mus musculus].
Length = 670
Score = 124 bits (311), Expect = 2e-28
Identities = 81/239 (33%), Positives = 124/239 (51%), Gaps = 5/239 (2%)
Frame = +3
Query: 333 PFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN 512
P C R + C +P +P+ T L+L N I + + F GL +L L L
Sbjct: 288 PRSCSLSYRTISCVHADFTEIPPITAPEVTNLELVGNSIISIPDEAFNGLPNLERLDLSR 347
Query: 513 NKI--SKIHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSG 686
N I S I KAF L+KL +L + N+LV IP +LPS+L EL+I+DN ++ + + S
Sbjct: 348 NNITSSGIGPKAFKSLKKLMRLNMDGNNLVHIPSDLPSTLEELKINDNNLQAIDEKSLSD 407
Query: 687 LRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNELHLDHNK 863
L + +E+ GN L +P AF L+ L+YLR+ K IP+ LP + EL+L++N+
Sbjct: 408 LNQLVTLELEGNNLSEINVDPLAFQSLESLSYLRLGRNKFRIIPQGLPASTEELYLENNQ 467
Query: 864 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL--PTLRELHLDNNKLSRVPAGLP 1034
I+ I K+ + L +N+I L+++ L + L NKL VP+ LP
Sbjct: 468 IEEITEICFNHTRKITMIILRYNKIEESRIAPLAWINQENLESIDLSYNKLYHVPSYLP 526
>ref|NP_958813.1| fibronectin leucine rich transmembrane protein 1 [Mus musculus].
Length = 674
Score = 114 bits (286), Expect = 2e-25
Identities = 85/263 (32%), Positives = 120/263 (45%), Gaps = 4/263 (1%)
Frame = +3
Query: 321 SAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELR-KDDFKGLQHLYA 497
S CP C C + C+D GL ++P +I D T L LQNN I+ D K
Sbjct: 51 STTCPSVCRCDNGFIYCNDRGLTSIPSDIPDDATTLYLQNNQINNAGIPQDLK------- 103
Query: 498 LVLVNNKISKIHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGV 677
+K+ K+Q +Y+ +N L E P NLP SL EL + DN +R + +
Sbjct: 104 --------TKV---------KVQVIYLYENDLDEFPINLPRSLRELHLQDNNVRTIARDS 146
Query: 678 FSGLRNMNCIEMGGNPLENSGFEPGAF-DGLKLNYLRISEAKLTGIPKDLPETLNELHLD 854
+ + + + + N + E AF D +L L +S L+ IP LP TL EL LD
Sbjct: 147 LARIPLLEKLHLDDNSVSTVSIEEDAFADSKQLKLLFLSRNHLSSIPSGLPHTLEELRLD 206
Query: 855 HNKIQAIELEDLLRYSKLYRLGLGHNQI--RMIENGSLSFLPTLRELHLDNNKLSRVPAG 1028
N+I I L + L RL L N + + I + + S L L EL L N L+ P
Sbjct: 207 DNRISTIPLHAFKGLNSLRRLVLDGNLLANQRIADDTFSRLQNLTELSLVRNSLAAPPLN 266
Query: 1029 LPDLKLLQVVYPHTNNITKVGVN 1097
LP LQ +Y N I+ + N
Sbjct: 267 LPSAH-LQKLYLQDNAISHIPYN 288
>ref|NP_766462.2| podocan precursor [Mus musculus].
Length = 611
Score = 113 bits (283), Expect = 4e-25
Identities = 82/267 (30%), Positives = 129/267 (48%), Gaps = 6/267 (2%)
Frame = +3
Query: 330 CPFGCHCHLR-VVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVL 506
CP C C VV C + L+ P ++ T L LQNN + ++ ++ LQ L L L
Sbjct: 69 CPRDCACSQEGVVDCGGIDLREFPGDLPEHTNHLSLQNNQLEKIYPEELSRLQRLETLNL 128
Query: 507 VNNKISK--IHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVF 680
NN+++ + +AF L L LY++ N L P LP++L + N + K+ F
Sbjct: 129 QNNRLTSRGLPEEAFEHLTSLNYLYLANNKLTLAPRFLPNALISVDFAANYLTKIYGLTF 188
Query: 681 SGLRNMNCIEMGGNPLENSGFEPGAFDG-LKLNYLRISEAKLTGIPKDLPETLNELHLDH 857
N+ + + N L ++G F+G + L +S L +PK LP L +LHL +
Sbjct: 189 GQKPNLRSVYLHNNKLADAGLPDHMFNGSSNVEILILSSNFLRHVPKHLPPALYKLHLKN 248
Query: 858 NKIQAIELEDLLRYSKLYRLGLGHNQI--RMIENGSLSFLPTLRELHLDNNKLSRVPAGL 1031
NK++ I S L L L +N + ++N + L +L L L +N LSRVPAGL
Sbjct: 249 NKLEKIPPGAFSELSNLRELYLQNNYLTDEGLDNETFWKLSSLEYLDLSSNNLSRVPAGL 308
Query: 1032 PDLKLLQVVYPHTNNITKVGVNDFCPV 1112
P + L +++ N I V + P+
Sbjct: 309 P--RSLVLLHLEKNAIQSVEADVLTPI 333
Score = 106 bits (264), Expect = 7e-23
Identities = 74/238 (31%), Positives = 114/238 (47%), Gaps = 5/238 (2%)
Frame = +3
Query: 336 FGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN 515
F ++ ++ S L+ VPK + P L L+NN + ++ F L +L L L NN
Sbjct: 214 FNGSSNVEILILSSNFLRHVPKHLPPALYKLHLKNNKLEKIPPGAFSELSNLRELYLQNN 273
Query: 516 KISK--IHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGL 689
++ + + F L L+ L +S N+L +P LP SL L + N I+ V V + +
Sbjct: 274 YLTDEGLDNETFWKLSSLEYLDLSSNNLSRVPAGLPRSLVLLHLEKNAIQSVEADVLTPI 333
Query: 690 RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKI 866
RN+ + + N L+ G P AF GL KL+ + + L +P LP + L + HN+I
Sbjct: 334 RNLEYLLLHSNQLQAKGIHPLAFQGLKKLHTVHLYNNALERVPSGLPRRVRTLMILHNQI 393
Query: 867 QAIELEDLLRYSKLYRLGLGHNQIR--MIENGSLSFLPTLRELHLDNNKLSRVPAGLP 1034
I ED L L L +N+I + + L LR L L N+L +P GLP
Sbjct: 394 TGIGREDFATTYFLEELNLSYNRITSPQMHRDAFRKLRLLRSLDLSGNRLQTLPPGLP 451
Score = 75.1 bits (183), Expect = 2e-13
Identities = 65/254 (25%), Positives = 112/254 (44%), Gaps = 26/254 (10%)
Frame = +3
Query: 354 LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK-- 527
L + S L VP + LL L+ N I + D +++L L+L +N++
Sbjct: 291 LEYLDLSSNNLSRVPAGLPRSLVLLHLEKNAIQSVEADVLTPIRNLEYLLLHSNQLQAKG 350
Query: 528 IHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCI 707
IH AF L+KL +++ N L +P LP + L I N+I + + F+ + +
Sbjct: 351 IHPLAFQGLKKLHTVHLYNNALERVPSGLPRRVRTLMILHNQITGIGREDFATTYFLEEL 410
Query: 708 EMGGNPLENSGFEPGAFDGLKL-NYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELE 884
+ N + + AF L+L L +S +L +P LP+ ++ L + N++ A+
Sbjct: 411 NLSYNRITSPQMHRDAFRKLRLLRSLDLSGNRLQTLPPGLPKNVHVLKVKRNELAALARG 470
Query: 885 DLLRYSKLYRLGLGHNQIRMIENGSLSFL-----------------------PTLRELHL 995
L ++L L L N++R G +++ P+L L+L
Sbjct: 471 ALAGMAQLRELYLTGNRLRSRALGPRAWVDLAGLQLLDIAGNQLTEVPEGLPPSLEYLYL 530
Query: 996 DNNKLSRVPAGLPD 1037
NNK+S VPA D
Sbjct: 531 QNNKISAVPANAFD 544
Score = 59.7 bits (143), Expect = 7e-09
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 2/141 (1%)
Frame = +3
Query: 354 LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK-- 527
LR + S L+ +P + + +L ++ N+++ L + G+ L L L N++
Sbjct: 433 LRSLDLSGNRLQTLPPGLPKNVHVLKVKRNELAALARGALAGMAQLRELYLTGNRLRSRA 492
Query: 528 IHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCI 707
+ +A+ L LQ L I+ N L E+P LP SL L + +N+I VP F N+ I
Sbjct: 493 LGPRAWVDLAGLQLLDIAGNQLTEVPEGLPPSLEYLYLQNNKISAVPANAFDSTPNLKGI 552
Query: 708 EMGGNPLENSGFEPGAFDGLK 770
+ N L AF LK
Sbjct: 553 FLRFNKLAVGSVVESAFRRLK 573
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,981,412
Number of extensions: 1522507
Number of successful extensions: 11056
Number of sequences better than 1.0e-05: 156
Number of HSP's gapped: 10031
Number of HSP's successfully gapped: 271
Length of query: 590
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 483
Effective length of database: 12,403,707
Effective search space: 5990990481
Effective search space used: 5990990481
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003295
(1771 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003135523.1| PREDICTED: biglycan [Sus scrofa]. 716 0.0
Alignment gi|NP_001230818.1| asporin [Sus scrofa]. 403 e-112
Alignment gi|NP_999085.1| decorin precursor [Sus scrofa]. 393 e-109
Alignment gi|XP_003130154.1| PREDICTED: prolargin-like [Sus scrofa]. 137 2e-32
Alignment gi|NP_001230268.1| lumican [Sus scrofa]. 128 9e-30
Alignment gi|XP_003123408.1| PREDICTED: podocan-like protein 1-like [Sus ... 115 1e-25
Alignment gi|XP_001927163.2| PREDICTED: keratocan-like [Sus scrofa]. 114 1e-25
Alignment gi|XP_003358145.1| PREDICTED: chondroadherin-like [Sus scrofa]. 112 5e-25
Alignment gi|XP_003357425.1| PREDICTED: fibromodulin-like isoform 2 [Sus ... 112 9e-25
Alignment gi|XP_003130153.1| PREDICTED: fibromodulin-like isoform 1 [Sus ... 112 9e-25
>ref|XP_003135523.1| PREDICTED: biglycan [Sus scrofa].
Length = 369
Score = 716 bits (1848), Expect = 0.0
Identities = 350/351 (99%), Positives = 350/351 (99%)
Frame = +3
Query: 195 FEQKAFWDFTLDDGLPMLNDEEASGADSTSGIPDLDALPPTFSAMCPFGCHCHLRVVQCS 374
FEQKAFWDFTLDDGLPMLNDEEASGADSTSGIPDLDALPPTFSAMCPFGCHCHLRVVQCS
Sbjct: 19 FEQKAFWDFTLDDGLPMLNDEEASGADSTSGIPDLDALPPTFSAMCPFGCHCHLRVVQCS 78
Query: 375 DLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPL 554
DLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPL
Sbjct: 79 DLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPL 138
Query: 555 RKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 734
RKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN
Sbjct: 139 RKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 198
Query: 735 SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 914
SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR
Sbjct: 199 SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 258
Query: 915 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKVGV 1094
LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVY HTNNITKVGV
Sbjct: 259 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGV 318
Query: 1095 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 1247
NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK
Sbjct: 319 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 369
>ref|NP_001230818.1| asporin [Sus scrofa].
Length = 370
Score = 403 bits (1035), Expect = e-112
Identities = 190/336 (56%), Positives = 254/336 (75%), Gaps = 4/336 (1%)
Frame = +3
Query: 252 DEEASGADSTSGIPDLDALPPTFS----AMCPFGCHCHLRVVQCSDLGLKAVPKEISPDT 419
+EE D S P + + P F CPFGC C+ RVV CSDLGL +VP I DT
Sbjct: 35 EEEGDDDDDNSLFPTREPINPFFPFDLFPTCPFGCQCYSRVVHCSDLGLSSVPSNIPFDT 94
Query: 420 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPLRKLQKLYISKNHLVE 599
++DLQNN I E++++DFKGL LYAL+L NNK++KIH KAF +KL++LY+S N L E
Sbjct: 95 RMVDLQNNKIKEIKENDFKGLTSLYALILNNNKLTKIHPKAFLTTKKLRRLYLSHNQLSE 154
Query: 600 IPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNY 779
IP NLP SLAELRIH+N+++K+ K F G+ ++ +EM NPL+N+G EPGAF+G+ + +
Sbjct: 155 IPLNLPKSLAELRIHENKVKKIQKETFKGMNALHVLEMSANPLDNNGIEPGAFEGVTVFH 214
Query: 780 LRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 959
+RI+EAKLT IPK+LP TL ELHLD+NKI +ELED RY +L RLGLG+N+I IENGS
Sbjct: 215 IRIAEAKLTSIPKELPSTLLELHLDYNKISTVELEDFKRYKELQRLGLGNNRITDIENGS 274
Query: 960 LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKVGVNDFCPVGFGVKRAYY 1139
L+ +P +RE+HL+NNKL ++P+GL +LK LQ+++ H+N+ITKVGVNDFCP +K++ Y
Sbjct: 275 LANIPRVREIHLENNKLKKIPSGLQELKYLQMIFLHSNSITKVGVNDFCPTVPKMKKSLY 334
Query: 1140 NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 1247
+ ISLFNNPV YWEVQPATFRCV R+++Q GN++K
Sbjct: 335 SAISLFNNPVKYWEVQPATFRCVLGRMSVQLGNFRK 370
>ref|NP_999085.1| decorin precursor [Sus scrofa].
Length = 360
Score = 393 bits (1009), Expect = e-109
Identities = 194/351 (55%), Positives = 251/351 (71%), Gaps = 1/351 (0%)
Frame = +3
Query: 195 FEQKAFWDFTLDDGLPMLNDEEASGADSTSGIPDLDALPPTFSAMCPFGCHCHLRVVQCS 374
F+QK +DF L+D EASG P++ L P MCPF C CHLRVVQCS
Sbjct: 19 FQQKGLFDFMLED--------EASGIGPEDRFPEVPELEP-LGPMCPFRCQCHLRVVQCS 69
Query: 375 DLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPL 554
DLGL VPK++ PDT LLDLQNN I+E++ DFK L++L+ L+L+NNKISKI AF+PL
Sbjct: 70 DLGLDKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 129
Query: 555 RKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 734
KL++LY+SKN L E+P +P +L ELR+H+N I KV K VF+GL M +E+G NPL++
Sbjct: 130 VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKAVFNGLNQMIVVELGTNPLKS 189
Query: 735 SGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLY 911
SG E GAF G+ KL+Y+RI++ +T IP+ LP +L ELHLD NKI ++ L + L
Sbjct: 190 SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKISKVDAASLKGLNNLA 249
Query: 912 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKVG 1091
+LGLG N I ++NGSL+ P LRELHL+NNKL++VP GL + K +QVVY H NNI+ VG
Sbjct: 250 KLGLGFNSISTVDNGSLANTPHLRELHLNNNKLNKVPGGLAEHKYIQVVYLHNNNISAVG 309
Query: 1092 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 1244
NDFCP G+ K+A Y+G+SLF+NPV YWE+QP+TFRCV R AIQ GNYK
Sbjct: 310 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRSAIQLGNYK 360
>ref|XP_003130154.1| PREDICTED: prolargin-like [Sus scrofa].
Length = 381
Score = 137 bits (344), Expect = 2e-32
Identities = 94/279 (33%), Positives = 142/279 (50%), Gaps = 6/279 (2%)
Frame = +3
Query: 291 PDLDALPPTFSAMCPFGCHCHL---RVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELR 461
P L PP+ CP C+C + C L+ VP I L LQNN I+EL
Sbjct: 59 PPLPPGPPSVFPDCPRECYCPSDFPSALYCDSRNLRKVPV-IPSRIHYLYLQNNFITELP 117
Query: 462 KDDFKGLQHLYALVLVNNKISKIHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRI 641
+ FK L + L NN+I K+ + L L LY+ KN L E+P LP +L +LR+
Sbjct: 118 VESFKNATGLRWINLDNNRIRKVDQRVLEKLPSLVFLYMEKNQLEEVPSALPRNLEQLRL 177
Query: 642 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPK 818
N+I ++P GVFS L N+ +++ N L + F+P F GLK L L ++ L +P
Sbjct: 178 SQNQISRIPPGVFSKLENLLLLDLQHNKLSDGVFKPDTFQGLKNLMQLNLAHNILRKMPP 237
Query: 819 DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI--RMIENGSLSFLPTLRELH 992
+P +++L+LD NKI+ I + L + L +N++ R + S + + L LH
Sbjct: 238 KVPTAIHQLYLDSNKIETIPNGYFKGFPNLAFIRLNYNKLSDRGLPKNSFN-ISNLLVLH 296
Query: 993 LDNNKLSRVPAGLPDLKLLQVVYPHTNNITKVGVNDFCP 1109
L +NK+S VPA L+ +Y + N+I K+ CP
Sbjct: 297 LSHNKISNVPA---INNKLEHLYLNNNSIEKINGTQICP 332
>ref|NP_001230268.1| lumican [Sus scrofa].
Length = 341
Score = 128 bits (322), Expect = 9e-30
Identities = 100/303 (33%), Positives = 152/303 (50%), Gaps = 7/303 (2%)
Frame = +3
Query: 321 SAMCPFGCHC---HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHL 491
S C C+C + + C +L LK+VP + P L L+NN I + F+ + L
Sbjct: 37 SPNCAPECNCPESYPTAMYCDELKLKSVPM-VPPGIKYLYLRNNQIDHIDDKAFENVTDL 95
Query: 492 YALVLVNNKI--SKIHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKV 665
L+L +N + SKI + FS L++L+KL+I+ N+L E LP SL +L++ +N+I K+
Sbjct: 96 EWLILDHNLLENSKIKGRVFSKLKQLKKLHINYNNLTESVGPLPKSLVDLQLTNNKISKL 155
Query: 666 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNE 842
G F GL N+ I + N L+ AF GLK L YL +S ++T +P LP +L
Sbjct: 156 --GSFDGLVNLTFIHLQHNQLKEDAVS-AAFRGLKGLEYLDLSFNQMTKLPSGLPVSLLT 212
Query: 843 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-LPTLRELHLDNNKLSRV 1019
L+LD+NKI I E +S L L L HN++ SF L +L EL L NKL +
Sbjct: 213 LYLDNNKISNIPDEYFKHFSGLQYLRLSHNELADSGIPGNSFNLSSLLELDLSYNKLKNI 272
Query: 1020 PAGLPDLKLLQVVYPHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 1199
P + L+ Y N + K V FC + + + + L N + + P +
Sbjct: 273 PTVNEN---LENYYLEVNELEKFEVKSFCKILGPLSYSKIKHLRLDGNRITQTSLPPDMY 329
Query: 1200 RCV 1208
C+
Sbjct: 330 ECL 332
>ref|XP_003123408.1| PREDICTED: podocan-like protein 1-like [Sus scrofa].
Length = 593
Score = 115 bits (287), Expect = 1e-25
Identities = 85/264 (32%), Positives = 123/264 (46%), Gaps = 6/264 (2%)
Frame = +3
Query: 261 ASGADSTSGIPDLDALPPTFSAMCPFGCHC-HLRVVQCSDLGLKAVPKEISPDTTLLDLQ 437
A G + + P L CP C C V C L L+ P I+ L LQ
Sbjct: 35 ALGMEEDASFPHLGESSQPPPRACPPRCSCPRADTVDCDGLELRVFPDNITRAAQHLSLQ 94
Query: 438 NNDISELRKDDFKGLQHLYALVLVNNKISK--IHAKAFSPLRKLQKLYISKNHLVEIPPN 611
NN + EL ++ L L L L NN IS + +AF L +LQ +Y++ N L P
Sbjct: 95 NNQLQELPYNELSRLSDLRTLNLHNNLISSEGLPDEAFESLTQLQHIYVAHNRLSVAPQF 154
Query: 612 LPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRI 788
LP SL + N + ++ F + + + N L N+G P AF G + + L +
Sbjct: 155 LPRSLRVADLAANEVTEIFPLTFGEKPALRSVYLHNNQLSNAGLPPDAFRGSEAVATLSL 214
Query: 789 SEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI--RMIENGSL 962
S +L+ +P LP +L LHL +N I + L R + L L L HNQ+ ++ +
Sbjct: 215 SSNRLSYVPPSLPPSLERLHLQNNIISKVPRGALSRQTHLRELYLQHNQLTDSGLDATTF 274
Query: 963 SFLPTLRELHLDNNKLSRVPAGLP 1034
S L L L L +N+L+ VPAGLP
Sbjct: 275 SKLHRLEYLDLSHNQLATVPAGLP 298
Score = 108 bits (270), Expect = 1e-23
Identities = 81/244 (33%), Positives = 121/244 (49%), Gaps = 5/244 (2%)
Frame = +3
Query: 384 LKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK--IHAKAFSPLR 557
L P+ + + DL N+++E+ F L ++ L NN++S + AF
Sbjct: 148 LSVAPQFLPRSLRVADLAANEVTEIFPLTFGEKPALRSVYLHNNQLSNAGLPPDAFRGSE 207
Query: 558 KLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 737
+ L +S N L +PP+LP SL L + +N I KVP+G S ++ + + N L +S
Sbjct: 208 AVATLSLSSNRLSYVPPSLPPSLERLHLQNNIISKVPRGALSRQTHLRELYLQHNQLTDS 267
Query: 738 GFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 914
G + F L +L YL +S +L +P LP TL LHL N+I+ +E L L
Sbjct: 268 GLDATTFSKLHRLEYLDLSHNQLATVPAGLPHTLAVLHLGRNRIRWVEAARLRGMRGLRY 327
Query: 915 LGLGHNQIRM--IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYPHTNNITKV 1088
L L HNQ+ + +L L L LHL N L R+P LP L +V PH N++T +
Sbjct: 328 LLLQHNQLGATGLPARALRPLRGLHTLHLYGNGLDRMPQALP-RHLRSLVLPH-NHVTML 385
Query: 1089 GVND 1100
G D
Sbjct: 386 GARD 389
Score = 91.7 bits (226), Expect = 1e-18
Identities = 69/226 (30%), Positives = 109/226 (48%), Gaps = 8/226 (3%)
Frame = +3
Query: 381 GLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS--KIHAKAFSPL 554
GL +P+ + L L +N ++ L D L L L N ++ ++H +AF L
Sbjct: 360 GLDRMPQALPRHLRSLVLPHNHVTMLGARDLAATPGLAELNLAYNHLASARVHRRAFRRL 419
Query: 555 RKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 734
R L+ L ++ N L ++P LP+SL LR+ N++R + +GL + + + N L
Sbjct: 420 RALRSLDLAGNQLTQLPAGLPASLNTLRLQRNQLRVLEPEPLAGLDQLQELSLAHNRLRV 479
Query: 735 SGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLY 911
PG + L L L +S +L+ +P DLPE L ELHL N+I + E + +L
Sbjct: 480 GDIGPGTWHELPALQVLDLSHNELSFVPPDLPEALEELHLQGNRISHVGPEAFISTPRLR 539
Query: 912 RLGLGHNQIRMIENGSLSF--LPTLRELHLDNNK---LSRVPAGLP 1034
L L N++ M +F LP LR + N L R+P +P
Sbjct: 540 ALFLRANRLHMTSISPEAFLGLPHLRMVDTTGNPEQVLVRLPPMVP 585
>ref|XP_001927163.2| PREDICTED: keratocan-like [Sus scrofa].
Length = 353
Score = 114 bits (286), Expect = 1e-25
Identities = 84/267 (31%), Positives = 134/267 (50%), Gaps = 7/267 (2%)
Frame = +3
Query: 330 CPFGCHC---HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYAL 500
CP C C + C + GLK +P I L L+NN I + + F+ L +
Sbjct: 42 CPRECFCPPSFPTALYCENRGLKEIPA-IPSRIWYLYLENNLIETIPEKPFENATQLRWI 100
Query: 501 VLVNNKISK--IHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNRIRKVPKG 674
L NKI+ I A S L+KL L++ N L E+P LP SL +L++ N++ ++P+G
Sbjct: 101 NLNKNKITNYGIEKGALSQLKKLLFLFLEDNELEEVPSPLPRSLEQLQLARNKVSRIPQG 160
Query: 675 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNELHL 851
FS L N+ +++ N L ++ F+ F GLK L L +++ L +P LP +L L
Sbjct: 161 TFSNLENLTLLDLQHNKLLDNAFQRDTFKGLKNLMQLNMAKNALRNMPPRLPANTMQLFL 220
Query: 852 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-LPTLRELHLDNNKLSRVPAG 1028
D+N I+ I K+ L L HN++ S F + ++ +L L +N+L++VP
Sbjct: 221 DNNSIEGIPENYFNVIPKVAFLRLNHNKLSDAGLPSSGFNVSSILDLQLSHNRLTKVPRI 280
Query: 1029 LPDLKLLQVVYPHTNNITKVGVNDFCP 1109
L+ L + + N I V V+ CP
Sbjct: 281 SAHLQHLHLDH---NKIKNVNVSVICP 304
>ref|XP_003358145.1| PREDICTED: chondroadherin-like [Sus scrofa].
Length = 359
Score = 112 bits (281), Expect = 5e-25
Identities = 81/271 (29%), Positives = 133/271 (49%), Gaps = 34/271 (12%)
Frame = +3
Query: 324 AMCPFGCHCH--LRVVQCSDLGLKAVPKEISPDTTLLDLQNND----------------- 446
A CP CHCH L+ V C +GL+ +PK +S T LL+LQ N+
Sbjct: 21 AACPQNCHCHGDLQHVICDKVGLQKIPK-VSEKTKLLNLQRNNFPVLAANSFRAMPNLVS 79
Query: 447 -------ISELRKDDFKGLQHLYALVLVNNKISKIHAKAFSPLRKLQKLYISKNHLVEIP 605
I E+ F+GL+ L L L +N I + A AF L +L LY+ N + E+P
Sbjct: 80 LHLQHCQIREVASGAFRGLKQLIYLYLSHNDIRVLRAGAFDDLTELTYLYLDHNKVTELP 139
Query: 606 PNLPSSLAE---LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-L 773
L S L L++++N+IR++ G F G +++ + + N L S +PG+ D ++ L
Sbjct: 140 RGLLSPLVNLFILQLNNNKIRELRAGAFQGAKDLRWLYLSENSL--SSLQPGSLDDVENL 197
Query: 774 NYLRISEAKLTGIPKDLPETL---NELHLDHNKIQAIELEDLLRYSK-LYRLGLGHNQIR 941
+ +L+ P L EL L HN +++I + + L L L + +
Sbjct: 198 AKFYLDRNQLSSYPSAALSKLRVVEELKLSHNPLKSIPDHAFQSFGRYLETLWLDNTNLE 257
Query: 942 MIENGSLSFLPTLRELHLDNNKLSRVPAGLP 1034
+G+ + TL+ +HL+NN+LS++P+ P
Sbjct: 258 KFSDGAFLGVTTLKHVHLENNRLSQLPSNFP 288
>ref|XP_003357425.1| PREDICTED: fibromodulin-like isoform 2 [Sus scrofa].
Length = 376
Score = 112 bits (279), Expect = 9e-25
Identities = 83/275 (30%), Positives = 130/275 (47%), Gaps = 7/275 (2%)
Frame = +3
Query: 309 PPTFSAMCPFGCHCHLR---VVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKG 479
PP CP C C + C + LK +P + + QNN IS +++ F
Sbjct: 69 PPPEPRDCPQECDCPPNFPTAMYCDNRNLKYLPF-VPSRMKYVYFQNNQISSIQEGVFDN 127
Query: 480 LQHLYALVLVNNKIS--KIHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNR 653
L + L N+I+ K+ K FS LR L++LY+ N+L +P LP SL EL + N+
Sbjct: 128 ATGLLWIALHGNQITSDKVGKKVFSKLRHLERLYLDHNNLTRMPGPLPRSLRELHLDHNQ 187
Query: 654 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPE 830
I +VP GL N+ + + N ++ G + GL+ L L +S L +P LP
Sbjct: 188 ISRVPNNALEGLENLTALYLQHNEIQEVG---SSMRGLRSLILLDLSYNHLRKVPDGLPS 244
Query: 831 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-LPTLRELHLDNNK 1007
L +L+L+HN + ++ KL + L HN + S +F +L EL L N+
Sbjct: 245 ALEQLYLEHNNVYSVPDSYFRGSPKLLYVRLSHNSLTNNGLASNTFNSSSLLELDLSYNQ 304
Query: 1008 LSRVPAGLPDLKLLQVVYPHTNNITKVGVNDFCPV 1112
L ++P P L+ +Y N I + ++ FC V
Sbjct: 305 LQKIP---PVNTNLENLYLQGNRINEFSISSFCTV 336
>ref|XP_003130153.1| PREDICTED: fibromodulin-like isoform 1 [Sus scrofa].
Length = 376
Score = 112 bits (279), Expect = 9e-25
Identities = 83/275 (30%), Positives = 130/275 (47%), Gaps = 7/275 (2%)
Frame = +3
Query: 309 PPTFSAMCPFGCHCHLR---VVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKG 479
PP CP C C + C + LK +P + + QNN IS +++ F
Sbjct: 69 PPPEPRDCPQECDCPPNFPTAMYCDNRNLKYLPF-VPSRMKYVYFQNNQISSIQEGVFDN 127
Query: 480 LQHLYALVLVNNKIS--KIHAKAFSPLRKLQKLYISKNHLVEIPPNLPSSLAELRIHDNR 653
L + L N+I+ K+ K FS LR L++LY+ N+L +P LP SL EL + N+
Sbjct: 128 ATGLLWIALHGNQITSDKVGKKVFSKLRHLERLYLDHNNLTRMPGPLPRSLRELHLDHNQ 187
Query: 654 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPE 830
I +VP GL N+ + + N ++ G + GL+ L L +S L +P LP
Sbjct: 188 ISRVPNNALEGLENLTALYLQHNEIQEVG---SSMRGLRSLILLDLSYNHLRKVPDGLPS 244
Query: 831 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-LPTLRELHLDNNK 1007
L +L+L+HN + ++ KL + L HN + S +F +L EL L N+
Sbjct: 245 ALEQLYLEHNNVYSVPDSYFRGSPKLLYVRLSHNSLTNNGLASNTFNSSSLLELDLSYNQ 304
Query: 1008 LSRVPAGLPDLKLLQVVYPHTNNITKVGVNDFCPV 1112
L ++P P L+ +Y N I + ++ FC V
Sbjct: 305 LQKIP---PVNTNLENLYLQGNRINEFSISSFCTV 336
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,221,122
Number of extensions: 1205789
Number of successful extensions: 9837
Number of sequences better than 1.0e-05: 130
Number of HSP's gapped: 8991
Number of HSP's successfully gapped: 229
Length of query: 590
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 485
Effective length of database: 8,729,747
Effective search space: 4233927295
Effective search space used: 4233927295
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003295
(1771 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 525 e-146
>Sscrofa_ChrX
|| Length = 144288218
Score = 525 bits (265), Expect = e-146
Identities = 286/296 (96%)
Strand = Plus / Plus
Query: 1049 ccaggtggtctacccgcacaccaacaacatcaccaaggtgggcgtcaatgacttctgccc 1108
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141857796 ccaggtggtctacctgcacaccaacaacatcaccaaggtgggcgtcaatgacttctgccc 141857855
Query: 1109 ggtgggcttcggggtcaagcgggcctattacaacggcatcagcctcttcaacaaccccgt 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141857856 ggtgggcttcggggtcaagcgggcctattacaacggcatcagcctcttcaacaaccccgt 141857915
Query: 1169 gccctactgggaggtgcagccggccaccttccgctgcgtcacggaccgtctggccattca 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141857916 gccctactgggaggtgcagccggccaccttccgctgcgtcacggaccgtctggccattca 141857975
Query: 1229 gtttggcaactacaaaaagtagaggcagccgccgccgccgaggtggcctgggccgggtct 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141857976 gtttggcaactacaaaaagtagaggcagccgccgccgccgaggtggcctgggccgggtct 141858035
Query: 1289 ctggggagcacagcggatgtcctgatnnnnnnnnntagagcaggggagcgccgggt 1344
|||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 141858036 ctggggagcacagcggatgtcctgatgggggggggtagagcaggggagcgccgggt 141858091
Score = 515 bits (260), Expect = e-143
Identities = 260/260 (100%)
Strand = Plus / Plus
Query: 125 cccaggcacacccaccatgtggcccctgtggctcctggcgtccctgctggccctgagcca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141854436 cccaggcacacccaccatgtggcccctgtggctcctggcgtccctgctggccctgagcca 141854495
Query: 185 ggccctgccgtttgagcaaaaagccttctgggacttcaccctggacgacgggctgcccat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141854496 ggccctgccgtttgagcaaaaagccttctgggacttcaccctggacgacgggctgcccat 141854555
Query: 245 gctgaatgacgaggaggcttcgggtgccgactcgacctcgggcatcccggacctggacgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141854556 gctgaatgacgaggaggcttcgggtgccgactcgacctcgggcatcccggacctggacgc 141854615
Query: 305 cctcccgcccaccttcagtgccatgtgccctttcggctgccactgccacctgcgggtcgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141854616 cctcccgcccaccttcagtgccatgtgccctttcggctgccactgccacctgcgggtcgt 141854675
Query: 365 ccagtgctctgacctgggtc 384
||||||||||||||||||||
Sbjct: 141854676 ccagtgctctgacctgggtc 141854695
Score = 434 bits (219), Expect = e-119
Identities = 219/219 (100%)
Strand = Plus / Plus
Query: 1440 agctttcttcccattcaccccaaagccaaattgtctgaggctccagtccaaggaacattg 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141858187 agctttcttcccattcaccccaaagccaaattgtctgaggctccagtccaaggaacattg 141858246
Query: 1500 tccggctgaacacaccccgcctgcctgccacacctccctcctcgtgcccttccagcgtcc 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141858247 tccggctgaacacaccccgcctgcctgccacacctccctcctcgtgcccttccagcgtcc 141858306
Query: 1560 aaccctcctgctaccctgtcctcctgtgtcccccgccagcctgcagccagttcatggccc 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141858307 aaccctcctgctaccctgtcctcctgtgtcccccgccagcctgcagccagttcatggccc 141858366
Query: 1620 atccatctgagcctccctgctctacaggcccccggccca 1658
|||||||||||||||||||||||||||||||||||||||
Sbjct: 141858367 atccatctgagcctccctgctctacaggcccccggccca 141858405
Score = 375 bits (189), Expect = e-101
Identities = 206/214 (96%)
Strand = Plus / Plus
Query: 495 gccctcgtcctggtgaacaacaagatttccaagatccacgcgaaggccttcagccccctg 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141855462 gccctcgtcctggtgaacaacaagatttccaagatccacgcgaaggccttcagccccctg 141855521
Query: 555 aggaagctgcagaagctctacatctccaagaaccacctggtggagatnnnnnnnaacctg 614
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 141855522 aggaaactgcagaagctctacatctccaagaaccacctggtggagatcccccccaacctg 141855581
Query: 615 cccagctccctggcggagctccgcatccatgacaaccgcatccgcaaggtgcccaagggc 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141855582 cccagctccctggcggagctccgcatccatgacaaccgcatccgcaaggtgcccaagggc 141855641
Query: 675 gtcttcagcgggctgcgcaacatgaactgcatcg 708
||||||||||||||||||||||||||||||||||
Sbjct: 141855642 gtcttcagcgggctgcgcaacatgaactgcatcg 141855675
Score = 289 bits (146), Expect = 3e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 910 acagactgggcctaggccacaaccagatccgcatgatcgagaacgggagcctgagttttc 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141856597 acagactgggcctaggccacaaccagatccgcatgatcgagaacgggagcctgagttttc 141856656
Query: 970 tgcccaccctgcgggagctgcacttggacaacaacaagctgtccagggtgcctgctggcc 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141856657 tgcccaccctgcgggagctgcacttggacaacaacaagctgtccagggtgcctgctggcc 141856716
Query: 1030 tccccgacctcaagctcctccaggtg 1055
||||||||||||||||||||||||||
Sbjct: 141856717 tccccgacctcaagctcctccaggtg 141856742
Score = 256 bits (129), Expect = 4e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 2 ctctctccacgaactgcccgggagtgagcagctgctctccgacggcctgacggacgacgg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141845633 ctctctccacgaactgcccgggagtgagcagctgctctccgacggcctgacggacgacgg 141845692
Query: 62 acacccggactgcctgatccccgagcctgccaaccagccagcctgcgcccggccgcttcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141845693 acacccggactgcctgatccccgagcctgccaaccagccagcctgcgcccggccgcttcc 141845752
Query: 122 ctccccagg 130
|||||||||
Sbjct: 141845753 ctccccagg 141845761
Score = 228 bits (115), Expect = 8e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 381 ggtctgaaggccgtgcccaaggagatctcgcccgacaccaccctgctggacctgcagaat 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141854865 ggtctgaaggccgtgcccaaggagatctcgcccgacaccaccctgctggacctgcagaat 141854924
Query: 441 aacgacatctccgagctccgaaaggacgacttcaaaggcctccagcacctctacg 495
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141854925 aacgacatctccgagctccgaaaggacgacttcaaaggcctccagcacctctacg 141854979
Score = 222 bits (112), Expect = 5e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 708 gagatgggtgggaaccccctggagaacagcggctttgaacctggagccttcgatggcctg 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141856032 gagatgggtgggaaccccctggagaacagcggctttgaacctggagccttcgatggcctg 141856091
Query: 768 aagctcaactacctgcgcatctctgaggccaagctcactggcatccccaaag 819
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141856092 aagctcaactacctgcgcatctctgaggccaagctcactggcatccccaaag 141856143
Score = 190 bits (96), Expect = 2e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 818 agacctccccgagactctgaacgaactccatctggaccacaacaagatccaggctatcga 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141856388 agacctccccgagactctgaacgaactccatctggaccacaacaagatccaggctatcga 141856447
Query: 878 gctggaggatctgctccgctattccaagctgtacag 913
||||||||||||||||||||||||||||||||||||
Sbjct: 141856448 gctggaggatctgctccgctattccaagctgtacag 141856483
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 1716 ttcacatcctcgggctgggtctggtccttgtctcgctgggtgggctgggccgtggt 1771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141858463 ttcacatcctcgggctgggtctggtccttgtctcgctgggtgggctgggccgtggt 141858518
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,553,981
Number of extensions: 252
Number of successful extensions: 252
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 10
Length of query: 1771
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1749
Effective length of database: 2,808,408,574
Effective search space: 4911906595926
Effective search space used: 4911906595926
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)