Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003298
(1366 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001093839.1| N-acylethanolamine-hydrolyzing acid amidase ... 580 e-166
Alignment gi|NP_001068927.1| acid ceramidase precursor [Bos taurus]. 193 3e-49
>ref|NP_001093839.1| N-acylethanolamine-hydrolyzing acid amidase [Bos taurus].
Length = 357
Score = 580 bits (1496), Expect = e-166
Identities = 275/324 (84%), Positives = 299/324 (92%)
Frame = +3
Query: 321 VSAADSPTAPPLFNVSLDAAPELRWLPVLRHFDKDLLRAALAQIVWDNVPEWVLTLIRKA 500
++AA +P APPLFNVSLDAAP+LRWLPVL+H+D+D L +A+A I+ D VP+WVL LIRK
Sbjct: 24 LAAAAAPLAPPLFNVSLDAAPQLRWLPVLQHYDRDFLHSAMAHIIGDYVPQWVLALIRKV 83
Query: 501 VWELEFFLPQPFIDEIRGMCDALDFSLGDCILLNLAYESTAFCTSIVAQDSRGHIYHGRN 680
V ELE LPQPF DEIRGMCDALDF+L DCILLNLAYE +AFCTSIVAQDS+GHIYHGRN
Sbjct: 84 VPELELLLPQPFADEIRGMCDALDFNLVDCILLNLAYEFSAFCTSIVAQDSKGHIYHGRN 143
Query: 681 LDYAFGRILRNLTVDVQFLKNGKIAYTGTTFVGYVGLWTGQSPHKFTVSGDERDKGWWWE 860
LDY FG LRNLT+DVQF+KNG+IAYTGTTFVGYVGLWTGQSPHKFTVSGDERDKGWWWE
Sbjct: 144 LDYVFGSFLRNLTLDVQFIKNGQIAYTGTTFVGYVGLWTGQSPHKFTVSGDERDKGWWWE 203
Query: 861 NVIAALFQRHSPISWLIRTTLSESESFEAAVYKLAKTPLIADVYYIVGGTTPREGVVITR 1040
N+IAALFQRHSP+SWLIRTTLSESE+FEAAVYKLAKTPLIADVYYIVGGT+P+EGVVITR
Sbjct: 204 NMIAALFQRHSPVSWLIRTTLSESENFEAAVYKLAKTPLIADVYYIVGGTSPKEGVVITR 263
Query: 1041 NRRGPADIWPLDPLNGAWFRVETNYDHWKPAPKKDDRRTPAIKALNATGQANLTLETLFQ 1220
NR GPADIWPLDPLNGAWFRVETNYDHWKP PK DDRRTPAIKALNATGQANL+LETLFQ
Sbjct: 264 NRGGPADIWPLDPLNGAWFRVETNYDHWKPVPKADDRRTPAIKALNATGQANLSLETLFQ 323
Query: 1221 VLSVFPRLYNYPIYTTVMSAASPD 1292
VLSVFP NY IYTTVMSAA+PD
Sbjct: 324 VLSVFPVCNNYTIYTTVMSAANPD 347
>ref|NP_001068927.1| acid ceramidase precursor [Bos taurus].
Length = 395
Score = 193 bits (491), Expect = 3e-49
Identities = 118/329 (35%), Positives = 178/329 (54%), Gaps = 21/329 (6%)
Frame = +3
Query: 351 PLFNVSLDAAPELRW--LPVLRHFDKDLLRAALAQIVWDNVPEW-VLTLIRKAVWELEFF 521
P + ++LD P RW L V++ ++ ++ IV VP ++ L+ + + L
Sbjct: 48 PWYTINLDLPPYKRWHELMVVKAPALKVIVNSMKNIVNAFVPSGKIIHLVDQKLPGLLGN 107
Query: 522 LPQPFIDEIRGMCDALDFSLGDCILLNLAYESTAFCTSIVAQDSRGHIYHGRNLDYA--- 692
P PF +E++G+ + LG+ IL N+ YE CTSI+ +D GH+ HGRNLD+
Sbjct: 108 FPGPFEEEMKGIAAVTEIPLGEIILFNIFYEFFTICTSIITEDKEGHLLHGRNLDFGVFL 167
Query: 693 ----------FGRILRNLTVDVQFLKNGKIAYTGTTFVGYVGLWTGQSPHKFTVSGDER- 839
L+ LTV++ F +N K + TTF GYVG+ TG P F+V+ +ER
Sbjct: 168 GWNINNDTWVITEELKPLTVNLDFQRNNKTLFKATTFAGYVGMLTGFKPGLFSVTLNERF 227
Query: 840 --DKGWWWENVIAALFQRHSP--ISWLIRTTLSESESFEAAVYKLAKTPLIADVYYIVGG 1007
D G+ V+ + + + ++IR+ L S S+E L KT ++A Y+I+GG
Sbjct: 228 SIDGGFM--GVMEWILGKKDAQWVGFIIRSVLENSTSYEETKNILTKTKILAPAYFILGG 285
Query: 1008 TTPREGVVITRNRRGPADIWPLDPLNGAWFRVETNYDHWKPAPKKDDRRTPAIKALNATG 1187
EG VITR+R+ DI+ LDP +G W+ V+TNYD WK DDRRTPA LN T
Sbjct: 286 NQSGEGCVITRDRKQSLDIYELDPKHGRWYVVQTNYDRWKNPFFLDDRRTPAKMCLNQTT 345
Query: 1188 QANLTLETLFQVLSVFPRLYNYPIYTTVM 1274
Q N++ T++ VLS P L +YT ++
Sbjct: 346 QENISFATIYDVLSTKPILNKLTVYTVLI 374
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,728,495
Number of extensions: 1191020
Number of successful extensions: 4208
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4195
Number of HSP's successfully gapped: 2
Length of query: 455
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 349
Effective length of database: 14,174,046
Effective search space: 4946742054
Effective search space used: 4946742054
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003298
(1366 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540012.2| PREDICTED: similar to N-acylsphingosine amidohy... 177 3e-44
Alignment gi|XP_544934.2| PREDICTED: similar to serine/threonine protein ... 141 1e-33
>ref|XP_540012.2| PREDICTED: similar to N-acylsphingosine amidohydrolase (acid
ceramidase) 1 preproprotein isoform a [Canis familiaris].
Length = 386
Score = 177 bits (448), Expect = 3e-44
Identities = 107/329 (32%), Positives = 171/329 (51%), Gaps = 21/329 (6%)
Frame = +3
Query: 351 PLFNVSLDAAPELRWLPVLRHFDK----DLLRAALAQIVWDNVPEW-VLTLIRKAVWELE 515
P + ++LD P RW ++ DK ++ +L +V VP ++ ++ + + L
Sbjct: 39 PWYTINLDLPPYKRWHELMA--DKAPALKIIVNSLKDLVTAFVPSGKIMQIVDQKLPGLL 96
Query: 516 FFLPQPFIDEIRGMCDALDFSLGDCILLNLAYESTAFCTSIVAQDSRGHIYHGRNLDYAF 695
P PF +E++G+ LG+ + N+ YE CTSI+ +D GH+ HGRN+D+
Sbjct: 97 GNFPGPFEEEMKGIAAVTGIPLGEILTFNVFYEFFTICTSIITEDKEGHLLHGRNMDFGI 156
Query: 696 -------------GRILRNLTVDVQFLKNGKIAYTGTTFVGYVGLWTGQSPHKFTVSGDE 836
L+ L+V++ F +N K + ++F GYVG+ TG P F+++ +E
Sbjct: 157 FLGWNINNNTWVVTEQLKPLSVNLDFQRNNKTVFKASSFAGYVGMLTGFKPGLFSLTLNE 216
Query: 837 RDK-GWWWENVIAALFQRHSP--ISWLIRTTLSESESFEAAVYKLAKTPLIADVYYIVGG 1007
R + VI + + I ++ R L S+E A L KT ++A Y+I+GG
Sbjct: 217 RFSINGGYLGVIEWILGKKDAMWIGFITRLVLENGTSYEEAKNTLIKTKILAPAYFILGG 276
Query: 1008 TTPREGVVITRNRRGPADIWPLDPLNGAWFRVETNYDHWKPAPKKDDRRTPAIKALNATG 1187
EG VITR+R+ D++ L+P W+ V+TNYD WK DDRRTPA LN T
Sbjct: 277 NKSGEGCVITRDRKQSLDVYELNPKQDRWYVVQTNYDRWKNPLFLDDRRTPAKMCLNQTT 336
Query: 1188 QANLTLETLFQVLSVFPRLYNYPIYTTVM 1274
Q N++ T++ VLS P L ++TT+M
Sbjct: 337 QENISFATMYDVLSTKPVLNKLTVFTTLM 365
>ref|XP_544934.2| PREDICTED: similar to serine/threonine protein phosphatase with
EF-hand motifs 2 isoform a [Canis familiaris].
Length = 970
Score = 141 bits (356), Expect = 1e-33
Identities = 100/227 (44%), Positives = 123/227 (54%), Gaps = 18/227 (7%)
Frame = +3
Query: 594 LLNLAYESTAFCTSIVAQDSRGHIYHGRNLDYAFGRILRNLTVDVQFLKNGKIA--YTGT 767
+ N A + + FCTSIVAQDSRGHIYHGRNLDY F L LTVDVQF+KNG+ GT
Sbjct: 1 MTNSAEQRSGFCTSIVAQDSRGHIYHGRNLDYPFENFLNKLTVDVQFIKNGQRGDHTRGT 60
Query: 768 TFVG-YVGLWTGQSPHKFTVSGDER------DKGWWWENVIAALFQRHSPISWLIRT--- 917
G G G++ H G ER W + + + ++ + +++
Sbjct: 61 WKAGDDDGCREGEAVHG---CGAERCLAEIYSHRWHCASAVFRMDEQKTNFPKAVKSDFE 117
Query: 918 -TLSESESFEAAVYKLAKTPLIADVYYIVGGTTPREGVVITRNRRGPADIWPLDPLNGAW 1094
TL+ESE+FEAAVYKLAKTPLIAD YYIVG G P+ L P +W
Sbjct: 118 DTLNESENFEAAVYKLAKTPLIADAYYIVGELERTTGAT-------PSQKMYLGPSPTSW 170
Query: 1095 FRVETNYDHWK-----PAPKKDDRRTPAIKALNATGQANLTLETLFQ 1220
E+ + D TPAIKALNATGQANL+LETLFQ
Sbjct: 171 LEWESEVYSGECGGGLLGSWLDVGGTPAIKALNATGQANLSLETLFQ 217
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,809,625
Number of extensions: 1225965
Number of successful extensions: 4376
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4365
Number of HSP's successfully gapped: 2
Length of query: 455
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 349
Effective length of database: 15,340,888
Effective search space: 5353969912
Effective search space used: 5353969912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003298
(1366 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055250.2| N-acylethanolamine-hydrolyzing acid amidase iso... 549 e-156
Alignment gi|NP_001035861.1| N-acylethanolamine-hydrolyzing acid amidase ... 519 e-147
Alignment gi|NP_808592.2| acid ceramidase isoform a preproprotein [Homo s... 191 1e-48
Alignment gi|NP_004306.3| acid ceramidase isoform b [Homo sapiens]. 191 1e-48
Alignment gi|NP_001120977.1| acid ceramidase isoform c [Homo sapiens]. 186 4e-47
>ref|NP_055250.2| N-acylethanolamine-hydrolyzing acid amidase isoform 1 precursor [Homo
sapiens].
Length = 359
Score = 549 bits (1415), Expect = e-156
Identities = 261/322 (81%), Positives = 286/322 (88%)
Frame = +3
Query: 327 AADSPTAPPLFNVSLDAAPELRWLPVLRHFDKDLLRAALAQIVWDNVPEWVLTLIRKAVW 506
+A SP A P FNVSLD+ PELRWLPVLRH+D DL+RAA+AQ++ D VP+WV LI K V
Sbjct: 26 SAASPPAAPRFNVSLDSVPELRWLPVLRHYDLDLVRAAMAQVIGDRVPKWVHVLIGKVVL 85
Query: 507 ELEFFLPQPFIDEIRGMCDALDFSLGDCILLNLAYESTAFCTSIVAQDSRGHIYHGRNLD 686
ELE FLPQPF EIRGMCD ++ SL DC+L+NLAYES+ FCTSIVAQDSRGHIYHGRNLD
Sbjct: 86 ELERFLPQPFTGEIRGMCDFMNLSLADCLLVNLAYESSVFCTSIVAQDSRGHIYHGRNLD 145
Query: 687 YAFGRILRNLTVDVQFLKNGKIAYTGTTFVGYVGLWTGQSPHKFTVSGDERDKGWWWENV 866
Y FG +LR LTVDVQFLKNG+IA+TGTTF+GYVGLWTGQSPHKFTVSGDERDKGWWWEN
Sbjct: 146 YPFGNVLRKLTVDVQFLKNGQIAFTGTTFIGYVGLWTGQSPHKFTVSGDERDKGWWWENA 205
Query: 867 IAALFQRHSPISWLIRTTLSESESFEAAVYKLAKTPLIADVYYIVGGTTPREGVVITRNR 1046
IAALF+RH P+SWLIR TLSESE+FEAAV KLAKTPLIADVYYIVGGT+PREGVVITRNR
Sbjct: 206 IAALFRRHIPVSWLIRATLSESENFEAAVGKLAKTPLIADVYYIVGGTSPREGVVITRNR 265
Query: 1047 RGPADIWPLDPLNGAWFRVETNYDHWKPAPKKDDRRTPAIKALNATGQANLTLETLFQVL 1226
GPADIWPLDPLNGAWFRVETNYDHWKPAPK+DDRRT AIKALNATGQANL+LE LFQ+L
Sbjct: 266 DGPADIWPLDPLNGAWFRVETNYDHWKPAPKEDDRRTSAIKALNATGQANLSLEALFQIL 325
Query: 1227 SVFPRLYNYPIYTTVMSAASPD 1292
SV P N+ IYTTVMSA SPD
Sbjct: 326 SVVPVYNNFTIYTTVMSAGSPD 347
>ref|NP_001035861.1| N-acylethanolamine-hydrolyzing acid amidase isoform 2 precursor [Homo
sapiens].
Length = 323
Score = 519 bits (1337), Expect = e-147
Identities = 245/298 (82%), Positives = 268/298 (89%)
Frame = +3
Query: 327 AADSPTAPPLFNVSLDAAPELRWLPVLRHFDKDLLRAALAQIVWDNVPEWVLTLIRKAVW 506
+A SP A P FNVSLD+ PELRWLPVLRH+D DL+RAA+AQ++ D VP+WV LI K V
Sbjct: 26 SAASPPAAPRFNVSLDSVPELRWLPVLRHYDLDLVRAAMAQVIGDRVPKWVHVLIGKVVL 85
Query: 507 ELEFFLPQPFIDEIRGMCDALDFSLGDCILLNLAYESTAFCTSIVAQDSRGHIYHGRNLD 686
ELE FLPQPF EIRGMCD ++ SL DC+L+NLAYES+ FCTSIVAQDSRGHIYHGRNLD
Sbjct: 86 ELERFLPQPFTGEIRGMCDFMNLSLADCLLVNLAYESSVFCTSIVAQDSRGHIYHGRNLD 145
Query: 687 YAFGRILRNLTVDVQFLKNGKIAYTGTTFVGYVGLWTGQSPHKFTVSGDERDKGWWWENV 866
Y FG +LR LTVDVQFLKNG+IA+TGTTF+GYVGLWTGQSPHKFTVSGDERDKGWWWEN
Sbjct: 146 YPFGNVLRKLTVDVQFLKNGQIAFTGTTFIGYVGLWTGQSPHKFTVSGDERDKGWWWENA 205
Query: 867 IAALFQRHSPISWLIRTTLSESESFEAAVYKLAKTPLIADVYYIVGGTTPREGVVITRNR 1046
IAALF+RH P+SWLIR TLSESE+FEAAV KLAKTPLIADVYYIVGGT+PREGVVITRNR
Sbjct: 206 IAALFRRHIPVSWLIRATLSESENFEAAVGKLAKTPLIADVYYIVGGTSPREGVVITRNR 265
Query: 1047 RGPADIWPLDPLNGAWFRVETNYDHWKPAPKKDDRRTPAIKALNATGQANLTLETLFQ 1220
GPADIWPLDPLNGAWFRVETNYDHWKPAPK+DDRRT AIKALNATGQANL+LE LFQ
Sbjct: 266 DGPADIWPLDPLNGAWFRVETNYDHWKPAPKEDDRRTSAIKALNATGQANLSLEALFQ 323
>ref|NP_808592.2| acid ceramidase isoform a preproprotein [Homo sapiens].
Length = 395
Score = 191 bits (486), Expect = 1e-48
Identities = 116/334 (34%), Positives = 178/334 (53%), Gaps = 24/334 (7%)
Frame = +3
Query: 345 APPLFNVSLDAAPELRW-------LPVLRHFDKDLLRAALAQIVWDNVPEW-VLTLIRKA 500
A P + ++LD P RW PVL+ ++ +L ++ VP ++ ++ +
Sbjct: 46 AVPWYTINLDLPPYKRWHELMLDKAPVLK-----VIVNSLKNMINTFVPSGKIMQVVDEK 100
Query: 501 VWELEFFLPQPFIDEIRGMCDALDFSLGDCILLNLAYESTAFCTSIVAQDSRGHIYHGRN 680
+ L P PF +E++G+ D LG+ I N+ YE CTSIVA+D +GH+ HGRN
Sbjct: 101 LPGLLGNFPGPFEEEMKGIAAVTDIPLGEIISFNIFYELFTICTSIVAEDKKGHLIHGRN 160
Query: 681 LDYA-------------FGRILRNLTVDVQFLKNGKIAYTGTTFVGYVGLWTGQSPHKFT 821
+D+ L+ LTV++ F +N K + ++F GYVG+ TG P F+
Sbjct: 161 MDFGVFLGWNINNDTWVITEQLKPLTVNLDFQRNNKTVFKASSFAGYVGMLTGFKPGLFS 220
Query: 822 VSGDERDK-GWWWENVIAALFQRHSP--ISWLIRTTLSESESFEAAVYKLAKTPLIADVY 992
++ +ER + ++ + + I +L RT L S S+E A L KT ++A Y
Sbjct: 221 LTLNERFSINGGYLGILEWILGKKDVMWIGFLTRTVLENSTSYEEAKNLLTKTKILAPAY 280
Query: 993 YIVGGTTPREGVVITRNRRGPADIWPLDPLNGAWFRVETNYDHWKPAPKKDDRRTPAIKA 1172
+I+GG EG VITR+R+ D++ LD G W+ V+TNYD WK DDRRTPA
Sbjct: 281 FILGGNQSGEGCVITRDRKESLDVYELDAKQGRWYVVQTNYDRWKHPFFLDDRRTPAKMC 340
Query: 1173 LNATGQANLTLETLFQVLSVFPRLYNYPIYTTVM 1274
LN T Q N++ ET++ VLS P L +YTT++
Sbjct: 341 LNRTSQENISFETMYDVLSTKPVLNKLTVYTTLI 374
>ref|NP_004306.3| acid ceramidase isoform b [Homo sapiens].
Length = 411
Score = 191 bits (486), Expect = 1e-48
Identities = 116/334 (34%), Positives = 178/334 (53%), Gaps = 24/334 (7%)
Frame = +3
Query: 345 APPLFNVSLDAAPELRW-------LPVLRHFDKDLLRAALAQIVWDNVPEW-VLTLIRKA 500
A P + ++LD P RW PVL+ ++ +L ++ VP ++ ++ +
Sbjct: 62 AVPWYTINLDLPPYKRWHELMLDKAPVLK-----VIVNSLKNMINTFVPSGKIMQVVDEK 116
Query: 501 VWELEFFLPQPFIDEIRGMCDALDFSLGDCILLNLAYESTAFCTSIVAQDSRGHIYHGRN 680
+ L P PF +E++G+ D LG+ I N+ YE CTSIVA+D +GH+ HGRN
Sbjct: 117 LPGLLGNFPGPFEEEMKGIAAVTDIPLGEIISFNIFYELFTICTSIVAEDKKGHLIHGRN 176
Query: 681 LDYA-------------FGRILRNLTVDVQFLKNGKIAYTGTTFVGYVGLWTGQSPHKFT 821
+D+ L+ LTV++ F +N K + ++F GYVG+ TG P F+
Sbjct: 177 MDFGVFLGWNINNDTWVITEQLKPLTVNLDFQRNNKTVFKASSFAGYVGMLTGFKPGLFS 236
Query: 822 VSGDERDK-GWWWENVIAALFQRHSP--ISWLIRTTLSESESFEAAVYKLAKTPLIADVY 992
++ +ER + ++ + + I +L RT L S S+E A L KT ++A Y
Sbjct: 237 LTLNERFSINGGYLGILEWILGKKDVMWIGFLTRTVLENSTSYEEAKNLLTKTKILAPAY 296
Query: 993 YIVGGTTPREGVVITRNRRGPADIWPLDPLNGAWFRVETNYDHWKPAPKKDDRRTPAIKA 1172
+I+GG EG VITR+R+ D++ LD G W+ V+TNYD WK DDRRTPA
Sbjct: 297 FILGGNQSGEGCVITRDRKESLDVYELDAKQGRWYVVQTNYDRWKHPFFLDDRRTPAKMC 356
Query: 1173 LNATGQANLTLETLFQVLSVFPRLYNYPIYTTVM 1274
LN T Q N++ ET++ VLS P L +YTT++
Sbjct: 357 LNRTSQENISFETMYDVLSTKPVLNKLTVYTTLI 390
>ref|NP_001120977.1| acid ceramidase isoform c [Homo sapiens].
Length = 389
Score = 186 bits (472), Expect = 4e-47
Identities = 102/266 (38%), Positives = 149/266 (56%), Gaps = 16/266 (6%)
Frame = +3
Query: 525 PQPFIDEIRGMCDALDFSLGDCILLNLAYESTAFCTSIVAQDSRGHIYHGRNLDYA---- 692
P PF +E++G+ D LG+ I N+ YE CTSIVA+D +GH+ HGRN+D+
Sbjct: 103 PGPFEEEMKGIAAVTDIPLGEIISFNIFYELFTICTSIVAEDKKGHLIHGRNMDFGVFLG 162
Query: 693 ---------FGRILRNLTVDVQFLKNGKIAYTGTTFVGYVGLWTGQSPHKFTVSGDERDK 845
L+ LTV++ F +N K + ++F GYVG+ TG P F+++ +ER
Sbjct: 163 WNINNDTWVITEQLKPLTVNLDFQRNNKTVFKASSFAGYVGMLTGFKPGLFSLTLNERFS 222
Query: 846 -GWWWENVIAALFQRHSP--ISWLIRTTLSESESFEAAVYKLAKTPLIADVYYIVGGTTP 1016
+ ++ + + I +L RT L S S+E A L KT ++A Y+I+GG
Sbjct: 223 INGGYLGILEWILGKKDVMWIGFLTRTVLENSTSYEEAKNLLTKTKILAPAYFILGGNQS 282
Query: 1017 REGVVITRNRRGPADIWPLDPLNGAWFRVETNYDHWKPAPKKDDRRTPAIKALNATGQAN 1196
EG VITR+R+ D++ LD G W+ V+TNYD WK DDRRTPA LN T Q N
Sbjct: 283 GEGCVITRDRKESLDVYELDAKQGRWYVVQTNYDRWKHPFFLDDRRTPAKMCLNRTSQEN 342
Query: 1197 LTLETLFQVLSVFPRLYNYPIYTTVM 1274
++ ET++ VLS P L +YTT++
Sbjct: 343 ISFETMYDVLSTKPVLNKLTVYTTLI 368
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,925,437
Number of extensions: 1213027
Number of successful extensions: 4415
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4397
Number of HSP's successfully gapped: 5
Length of query: 455
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 349
Effective length of database: 14,802,980
Effective search space: 5166240020
Effective search space used: 5166240020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003298
(1366 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080248.2| N-acylethanolamine-hydrolyzing acid amidase iso... 535 e-152
Alignment gi|NP_001157159.1| N-acylethanolamine-hydrolyzing acid amidase ... 528 e-150
Alignment gi|NP_062708.1| acid ceramidase precursor [Mus musculus]. 199 3e-51
>ref|NP_080248.2| N-acylethanolamine-hydrolyzing acid amidase isoform 1 [Mus musculus].
Length = 362
Score = 535 bits (1378), Expect = e-152
Identities = 253/318 (79%), Positives = 283/318 (88%)
Frame = +3
Query: 339 PTAPPLFNVSLDAAPELRWLPVLRHFDKDLLRAALAQIVWDNVPEWVLTLIRKAVWELEF 518
P PPLFNVSLDAAPE RWLP+LRH+D D LR A+AQ++ D VP+WVL ++ + V ++E
Sbjct: 35 PGTPPLFNVSLDAAPEQRWLPMLRHYDPDFLRTAVAQVIGDRVPQWVLGMVGEIVSKVES 94
Query: 519 FLPQPFIDEIRGMCDALDFSLGDCILLNLAYESTAFCTSIVAQDSRGHIYHGRNLDYAFG 698
FLPQPF DEIR +CD+L+ SL D IL+NLAYE++AFCTSIVAQDS+GHIYHGRNLDY FG
Sbjct: 95 FLPQPFTDEIRSICDSLNLSLADGILVNLAYEASAFCTSIVAQDSQGHIYHGRNLDYPFG 154
Query: 699 RILRNLTVDVQFLKNGKIAYTGTTFVGYVGLWTGQSPHKFTVSGDERDKGWWWENVIAAL 878
+ILR LT +VQF+KNG+IA+TGTTFVGYVGLWTGQSPHKFT+SGDERDKGWWWEN+IAAL
Sbjct: 155 KILRKLTANVQFIKNGQIAFTGTTFVGYVGLWTGQSPHKFTISGDERDKGWWWENMIAAL 214
Query: 879 FQRHSPISWLIRTTLSESESFEAAVYKLAKTPLIADVYYIVGGTTPREGVVITRNRRGPA 1058
HSPISWLIR TLSESESFEAAVY LAKTPLIADVYYIVGGT+P+EGVVITR+R GPA
Sbjct: 215 SLGHSPISWLIRKTLSESESFEAAVYTLAKTPLIADVYYIVGGTSPKEGVVITRDRGGPA 274
Query: 1059 DIWPLDPLNGAWFRVETNYDHWKPAPKKDDRRTPAIKALNATGQANLTLETLFQVLSVFP 1238
DIWPLDPLNG WFRVETNYDHWKPAPK DDRRTPAIKALNATGQA+L LETLFQVLS+FP
Sbjct: 275 DIWPLDPLNGEWFRVETNYDHWKPAPKVDDRRTPAIKALNATGQAHLNLETLFQVLSLFP 334
Query: 1239 RLYNYPIYTTVMSAASPD 1292
NY IYTTVMSAA PD
Sbjct: 335 VYNNYTIYTTVMSAAEPD 352
>ref|NP_001157159.1| N-acylethanolamine-hydrolyzing acid amidase isoform 2 [Mus musculus].
Length = 360
Score = 528 bits (1361), Expect = e-150
Identities = 252/318 (79%), Positives = 282/318 (88%)
Frame = +3
Query: 339 PTAPPLFNVSLDAAPELRWLPVLRHFDKDLLRAALAQIVWDNVPEWVLTLIRKAVWELEF 518
P PPLFNVSLDAAPE RWLP+LRH+D D LR A+AQ++ VP+WVL ++ + V ++E
Sbjct: 35 PGTPPLFNVSLDAAPEQRWLPMLRHYDPDFLRTAVAQVI--GVPQWVLGMVGEIVSKVES 92
Query: 519 FLPQPFIDEIRGMCDALDFSLGDCILLNLAYESTAFCTSIVAQDSRGHIYHGRNLDYAFG 698
FLPQPF DEIR +CD+L+ SL D IL+NLAYE++AFCTSIVAQDS+GHIYHGRNLDY FG
Sbjct: 93 FLPQPFTDEIRSICDSLNLSLADGILVNLAYEASAFCTSIVAQDSQGHIYHGRNLDYPFG 152
Query: 699 RILRNLTVDVQFLKNGKIAYTGTTFVGYVGLWTGQSPHKFTVSGDERDKGWWWENVIAAL 878
+ILR LT +VQF+KNG+IA+TGTTFVGYVGLWTGQSPHKFT+SGDERDKGWWWEN+IAAL
Sbjct: 153 KILRKLTANVQFIKNGQIAFTGTTFVGYVGLWTGQSPHKFTISGDERDKGWWWENMIAAL 212
Query: 879 FQRHSPISWLIRTTLSESESFEAAVYKLAKTPLIADVYYIVGGTTPREGVVITRNRRGPA 1058
HSPISWLIR TLSESESFEAAVY LAKTPLIADVYYIVGGT+P+EGVVITR+R GPA
Sbjct: 213 SLGHSPISWLIRKTLSESESFEAAVYTLAKTPLIADVYYIVGGTSPKEGVVITRDRGGPA 272
Query: 1059 DIWPLDPLNGAWFRVETNYDHWKPAPKKDDRRTPAIKALNATGQANLTLETLFQVLSVFP 1238
DIWPLDPLNG WFRVETNYDHWKPAPK DDRRTPAIKALNATGQA+L LETLFQVLS+FP
Sbjct: 273 DIWPLDPLNGEWFRVETNYDHWKPAPKVDDRRTPAIKALNATGQAHLNLETLFQVLSLFP 332
Query: 1239 RLYNYPIYTTVMSAASPD 1292
NY IYTTVMSAA PD
Sbjct: 333 VYNNYTIYTTVMSAAEPD 350
>ref|NP_062708.1| acid ceramidase precursor [Mus musculus].
Length = 394
Score = 199 bits (507), Expect = 3e-51
Identities = 118/327 (36%), Positives = 178/327 (54%), Gaps = 19/327 (5%)
Frame = +3
Query: 351 PLFNVSLDAAPELRWLPVLRHFDKDL--LRAALAQIVWDNVPEW-VLTLIRKAVWELEFF 521
P ++LD P RW +L L L ++ +V VP ++ ++ + + +
Sbjct: 47 PWHTINLDLPPYKRWHELLAQKAPALRILVNSITSLVNTFVPSGKLMKMVDQKLPGMIGS 106
Query: 522 LPQPFIDEIRGMCDALDFSLGDCILLNLAYESTAFCTSIVAQDSRGHIYHGRNLDYAF-- 695
LP PF +E+RG+ D LG+ I N+ YE CTSI+ +D +GH+ HGRN+D+
Sbjct: 107 LPDPFGEEMRGIADVTGIPLGEIISFNIFYELFTMCTSIITEDEKGHLLHGRNMDFGIFL 166
Query: 696 -----------GRILRNLTVDVQFLKNGKIAYTGTTFVGYVGLWTGQSPHKFTVSGDERD 842
L+ LTV++ F +N K + T+FVGYVG+ TG P F++S +ER
Sbjct: 167 GWNINNNTWVVTEELKPLTVNLDFQRNNKTVFKATSFVGYVGMLTGFKPGLFSLSLNERF 226
Query: 843 K-GWWWENVIAALFQRHSP--ISWLIRTTLSESESFEAAVYKLAKTPLIADVYYIVGGTT 1013
+ ++ +F R + ++ R+ L + S+E A L KT ++A VY+I+GG
Sbjct: 227 SINGGYLGILEWMFGRKDAQWVGFITRSVLENTTSYEEAKNTLTKTKIMAPVYFILGGKK 286
Query: 1014 PREGVVITRNRRGPADIWPLDPLNGAWFRVETNYDHWKPAPKKDDRRTPAIKALNATGQA 1193
EG VITR R+ D++ LDP +G W+ V+TNYD WK DDRRTPA K LN T Q
Sbjct: 287 SGEGCVITRERKESLDVYELDPKHGRWYVVQTNYDRWKNTLFIDDRRTPAKKCLNHTTQK 346
Query: 1194 NLTLETLFQVLSVFPRLYNYPIYTTVM 1274
NL+ T++ VLS P L ++TT+M
Sbjct: 347 NLSFATIYDVLSTKPVLNKLTVFTTLM 373
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,663,339
Number of extensions: 1013920
Number of successful extensions: 3563
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3547
Number of HSP's successfully gapped: 3
Length of query: 455
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 350
Effective length of database: 12,463,779
Effective search space: 4362322650
Effective search space used: 4362322650
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003298
(1366 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129135.1| PREDICTED: n-acylethanolamine-hydrolyzing ac... 660 0.0
Alignment gi|XP_003134235.2| PREDICTED: acid ceramidase-like, partial [Su... 184 1e-46
>ref|XP_003129135.1| PREDICTED: n-acylethanolamine-hydrolyzing acid amidase-like [Sus
scrofa].
Length = 356
Score = 660 bits (1703), Expect = 0.0
Identities = 320/324 (98%), Positives = 320/324 (98%)
Frame = +3
Query: 321 VSAADSPTAPPLFNVSLDAAPELRWLPVLRHFDKDLLRAALAQIVWDNVPEWVLTLIRKA 500
VSAADSPTAPPLFNVSLDAAPELRWLPVLRHFDKDLLRAALAQIVWDNVPEWVLTLIRKA
Sbjct: 23 VSAADSPTAPPLFNVSLDAAPELRWLPVLRHFDKDLLRAALAQIVWDNVPEWVLTLIRKA 82
Query: 501 VWELEFFLPQPFIDEIRGMCDALDFSLGDCILLNLAYESTAFCTSIVAQDSRGHIYHGRN 680
VWELEFFLPQPFIDEIRGMCDALDFSLGDCILLNLAYESTAFCTSIVAQDSRGHIYHGRN
Sbjct: 83 VWELEFFLPQPFIDEIRGMCDALDFSLGDCILLNLAYESTAFCTSIVAQDSRGHIYHGRN 142
Query: 681 LDYAFGRILRNLTVDVQFLKNGKIAYTGTTFVGYVGLWTGQSPHKFTVSGDERDKGWWWE 860
LDYAFGRILRNLTVDVQFLKNGKIAYTGTTFVGYVGLWTGQSPHKFTVSGDERDKGWWWE
Sbjct: 143 LDYAFGRILRNLTVDVQFLKNGKIAYTGTTFVGYVGLWTGQSPHKFTVSGDERDKGWWWE 202
Query: 861 NVIAALFQRHSPISWLIRTTLSESESFEAAVYKLAKTPLIADVYYIVGGTTPREGVVITR 1040
NVIAALFQRHSPISWLIRTTLSESESFEAAVYKLAKTPLIADVYYIVGGTTPREGVVITR
Sbjct: 203 NVIAALFQRHSPISWLIRTTLSESESFEAAVYKLAKTPLIADVYYIVGGTTPREGVVITR 262
Query: 1041 NRRGPADIWPLDPLNGAWFRVETNYDHWKPAPKKDDRRTPAIKALNATGQANLTLETLFQ 1220
NRRGPADIWPLDPLNGAWFRVETNYDHWKPAPKKDDRRTPAIKALNATGQANLTLETLFQ
Sbjct: 263 NRRGPADIWPLDPLNGAWFRVETNYDHWKPAPKKDDRRTPAIKALNATGQANLTLETLFQ 322
Query: 1221 VLSVFPRLYNYPIYTTVMSAASPD 1292
VLSVFP NY IYTTVMSAASPD
Sbjct: 323 VLSVFPVYNNYTIYTTVMSAASPD 346
>ref|XP_003134235.2| PREDICTED: acid ceramidase-like, partial [Sus scrofa].
Length = 369
Score = 184 bits (467), Expect = 1e-46
Identities = 114/329 (34%), Positives = 176/329 (53%), Gaps = 21/329 (6%)
Frame = +3
Query: 351 PLFNVSLDAAPELRWLPVLRHFDK----DLLRAALAQIVWDNVPEW-VLTLIRKAVWELE 515
P + ++LD P RW ++ DK ++ +L +V VP +L ++ + + L
Sbjct: 22 PWYTINLDLPPYKRWHELM--VDKAPALKVIVNSLKNMVNAFVPSGKILEIVDQKLPGLL 79
Query: 516 FFLPQPFIDEIRGMCDALDFSLGDCILLNLAYESTAFCTSIVAQDSRGHIYHGRNLDYAF 695
P PF +E++G+ LG+ I N+ YE CTSI+ +D GH+ HGRN+D+
Sbjct: 80 GNFPGPFEEEMKGIAAVTGIPLGEIISYNIFYEFFTICTSIITEDKGGHLLHGRNMDFGL 139
Query: 696 -------------GRILRNLTVDVQFLKNGKIAYTGTTFVGYVGLWTGQSPHKFTVSGDE 836
L+ LTV++ F +N K + +F GYVG+ TG P F+++ +E
Sbjct: 140 LLGWNINNNTWVVTEQLKPLTVNLNFQRNNKTVFKAASFAGYVGVMTGFKPGLFSLTLNE 199
Query: 837 R--DKGWWWENVIAALFQRHSP-ISWLIRTTLSESESFEAAVYKLAKTPLIADVYYIVGG 1007
R G + + L ++ + I +++R+ L S S+E A L KT L+A Y+I+GG
Sbjct: 200 RFSSNGGYIGILEWVLGKKDAKWIGFILRSVLENSTSYEEAKNILTKTKLLAPAYFILGG 259
Query: 1008 TTPREGVVITRNRRGPADIWPLDPLNGAWFRVETNYDHWKPAPKKDDRRTPAIKALNATG 1187
EG VITR+R+ D++ LDP G W+ V+TNYD WK DDRRTPA LN T
Sbjct: 260 NVSGEGCVITRDRKESLDVYELDPKQGRWYVVQTNYDRWKNTFFLDDRRTPAKICLNQTT 319
Query: 1188 QANLTLETLFQVLSVFPRLYNYPIYTTVM 1274
Q N++ TL+ VLS P L ++TT++
Sbjct: 320 QENISFATLYDVLSTKPVLNKLTVFTTLI 348
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,477,020
Number of extensions: 765134
Number of successful extensions: 2729
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2720
Number of HSP's successfully gapped: 2
Length of query: 455
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 353
Effective length of database: 8,804,438
Effective search space: 3107966614
Effective search space used: 3107966614
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003298
(1366 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 874 0.0
>Sscrofa_Chr08
|| Length = 148491826
Score = 874 bits (441), Expect = 0.0
Identities = 453/457 (99%)
Strand = Plus / Minus
Query: 2 cccgggatcccaggcgggttaggactcgtggctgtggtggaggtgcggtggatgaaggcc 61
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 75738797 cccgggatcccaggcgggttaggactcgtggctgtggtgggggtgcggtggatgaaggcc 75738738
Query: 62 ctggggcgggaagcgcggatgcctggagcgggaggcggctcttctcgtgattccaggtcc 121
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 75738737 ctggggcgggaagcgcggatgcctggagcgggaggcggctcctctcgtgattccaggtcc 75738678
Query: 122 ggggagacttagcccgtcgagccgctcgcggactccgcctccagcaccgccaccctcggc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75738677 ggggagacttagcccgtcgagccgctcgcggactccgcctccagcaccgccaccctcggc 75738618
Query: 182 tccgcctcctcctcgagcgcttattccaggcactggcaggggccacaagggtccagttgt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75738617 tccgcctcctcctcgagcgcttattccaggcactggcaggggccacaagggtccagttgt 75738558
Query: 242 ggctgctcgagctatgggggctgaggcccctggtgcgcgcccggcgctggcactgctgct 301
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75738557 ggctgctcgagctatgagggctgaggcccctggtgcgcgcccggcgctggcactgctgct 75738498
Query: 302 gctgttggccggggccagggtatcggccgccgactcgcccaccgccccgccactcttcaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 75738497 gctgttggccggggccagggtatcggccgccgactcgcccaccgccccgccgctcttcaa 75738438
Query: 362 cgtgagtctggacgcggccccggagctgcgctggctcccggtgctgcggcactttgataa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75738437 cgtgagtctggacgcggccccggagctgcgctggctcccggtgctgcggcactttgataa 75738378
Query: 422 ggacttgctgcgtgccgcgctggcccagattgtctgg 458
|||||||||||||||||||||||||||||||||||||
Sbjct: 75738377 ggacttgctgcgtgccgcgctggcccagattgtctgg 75738341
Score = 349 bits (176), Expect = 3e-93
Identities = 176/176 (100%)
Strand = Plus / Minus
Query: 918 accctgagtgaatcagaaagcttcgaagctgctgtttacaaattggccaagacgcccctt 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75719314 accctgagtgaatcagaaagcttcgaagctgctgtttacaaattggccaagacgcccctt 75719255
Query: 978 attgctgatgtttattacatcgttggtggcacgaccccccgggagggagtggtcatcaca 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75719254 attgctgatgtttattacatcgttggtggcacgaccccccgggagggagtggtcatcaca 75719195
Query: 1038 aggaacagacgtggcccagcggacatttggcctctagatcctttaaacggagcgtg 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75719194 aggaacagacgtggcccagcggacatttggcctctagatcctttaaacggagcgtg 75719139
Score = 321 bits (162), Expect = 6e-85
Identities = 165/166 (99%)
Strand = Plus / Minus
Query: 457 gggataatgtccccgagtgggtcctcacactgatccgaaaggcggtctgggagctggagt 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75737697 gggataatgtccccgagtgggtcctcacactgatccgaaaggcggtctgggagctggagt 75737638
Query: 517 tcttcctgccccagcccttcatcgacgagatccgcgggatgtgcgacgccctggacttca 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75737637 tcttcctgccccagcccttcatcgacgagatccgcgggatgtgcgacgccctggacttca 75737578
Query: 577 gcctgggcgactgcatcctcctcaacctggcctacgagtccaccgc 622
||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 75737577 gcctgggcgactgcatcctcctcaacctggcctacgaatccaccgc 75737532
Score = 252 bits (127), Expect = 4e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 623 attctgcacgagtattgtggctcaggactccagaggccacatttaccacggccggaatct 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75733417 attctgcacgagtattgtggctcaggactccagaggccacatttaccacggccggaatct 75733358
Query: 683 ggattatgcttttggaagaatcttacgcaatttgactgtggatgtgcagttcttaaagaa 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75733357 ggattatgcttttggaagaatcttacgcaatttgactgtggatgtgcagttcttaaagaa 75733298
Query: 743 cgggaag 749
|||||||
Sbjct: 75733297 cgggaag 75733291
Score = 184 bits (93), Expect = 9e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 748 agattgcgtacacaggaaccactttcgttggctatgtaggcttatggactggtcagagtc 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75728822 agattgcgtacacaggaaccactttcgttggctatgtaggcttatggactggtcagagtc 75728763
Query: 808 cacacaagttcacggtttctggcgacgaacgag 840
|||||||||||||||||||||||||||||||||
Sbjct: 75728762 cacacaagttcacggtttctggcgacgaacgag 75728730
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 839 agataaaggctggtggtgggagaacgtcattgctgccctttttcagagacactcaccaat 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75724737 agataaaggctggtggtgggagaacgtcattgctgccctttttcagagacactcaccaat 75724678
Query: 899 cagctggcttatccgcacc 917
|||||||||||||||||||
Sbjct: 75724677 cagctggcttatccgcacc 75724659
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 1151 cagaacacctgccatcaaagcccttaatgccacaggccaagccaacctcaccctggagac 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75717181 cagaacacctgccatcaaagcccttaatgccacaggccaagccaacctcaccctggagac 75717122
Query: 1211 gctcttccaggt 1222
||||||||||||
Sbjct: 75717121 gctcttccaggt 75717110
Score = 133 bits (67), Expect = 3e-28
Identities = 98/106 (92%), Gaps = 2/106 (1%)
Strand = Plus / Minus
Query: 1250 ctacccaatttatactacggtaatgagtgctgccagcccagac-agtatatgactaggat 1308
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 75710981 ctacacaatttatactacggtaatgagtgctgccagcccagacaagtatatgactaggat 75710922
Query: 1309 cagaaa-ctggggttaaagcagaagagtgacttncactatgctgtg 1353
|||||| ||||| | |||||||||||||||||| ||||||||||
Sbjct: 75710921 cagaaacctgggttaaaagcagaagagtgacttcacctatgctgtg 75710876
Score = 125 bits (63), Expect = 7e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 1091 gtggttccgagttgagacaaactatgatcactggaagccagcgcctaagaaagatgaccg 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75718492 gtggttccgagttgagacaaactatgatcactggaagccagcgcctaagaaagatgaccg 75718433
Query: 1151 cag 1153
|||
Sbjct: 75718432 cag 75718430
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,847,940
Number of extensions: 207
Number of successful extensions: 207
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 9
Length of query: 1366
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1345
Effective length of database: 2,808,413,156
Effective search space: 3777315694820
Effective search space used: 3777315694820
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)