Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003302
(1082 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015563.1| GPI mannosyltransferase 1 [Bos taurus]. 420 e-132
>ref|NP_001015563.1| GPI mannosyltransferase 1 [Bos taurus].
Length = 423
Score = 420 bits (1079), Expect(3) = e-132
Identities = 207/253 (81%), Positives = 219/253 (86%)
Frame = +1
Query: 178 MGSATHWGEWFLNLRVSPSGVFGVAFLARVALVFYGVFQDRTLLVKYTDIDYQVFTDAAR 357
M THWG+ FLNLRV P+GVF VAF ARVAL+FYGVFQDRTLLV+YTDIDYQVFTDAAR
Sbjct: 1 MSPTTHWGDKFLNLRVPPAGVFVVAFFARVALIFYGVFQDRTLLVRYTDIDYQVFTDAAR 60
Query: 358 FVTEGRSPYLRATYRYTPLLGWLLTPNIYVSELFGKFLFISFDXXXXXXXXXXXXXXXXG 537
FVTEG SPYLRATYRYTPLL WLLTPNIY++ELFGKFLFISFD G
Sbjct: 61 FVTEGHSPYLRATYRYTPLLAWLLTPNIYLNELFGKFLFISFDLFTAFLLYRLLLLKGLG 120
Query: 538 QRQACGYCVFWLLNPLPMAVSSRGNADSIVASLVLMALYLIEKKFVARAAVFYGFAVHLK 717
+RQACGYCVFWLLNPLPMAVSSRGNADSIVASLVLM LYLIEK+ VA AAV YGFAVHLK
Sbjct: 121 RRQACGYCVFWLLNPLPMAVSSRGNADSIVASLVLMTLYLIEKRLVACAAVSYGFAVHLK 180
Query: 718 MYPVTYILPIALHLLPERDREEDLRQSRYSFHARLFEFLKRLCNRAVLLFAAVAGLTFFA 897
MYPVTYILPIALHLLPERD +E LRQSRYSF RL+EFLKRLC+RAVLLF AVAGLTFFA
Sbjct: 181 MYPVTYILPIALHLLPERDSDEGLRQSRYSFQVRLYEFLKRLCHRAVLLFVAVAGLTFFA 240
Query: 898 LSFGFYYKYGWEF 936
LSFGFYY+YGWEF
Sbjct: 241 LSFGFYYRYGWEF 253
Score = 55.8 bits (133), Expect(3) = e-132
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = +2
Query: 983 HFSPYFYMLYLTAESKWSFPPGIAAFLP 1066
+FSPYFYMLYLTAESKWSF GIAAFLP
Sbjct: 270 NFSPYFYMLYLTAESKWSFSLGIAAFLP 297
Score = 37.4 bits (85), Expect(3) = e-132
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +3
Query: 936 LEHTYLYHLTRRDIRH 983
LEH YLYHLTRRDIRH
Sbjct: 254 LEHAYLYHLTRRDIRH 269
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,425,481
Number of extensions: 1179273
Number of successful extensions: 4660
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4620
Number of HSP's successfully gapped: 3
Length of query: 360
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 257
Effective length of database: 14,273,310
Effective search space: 3668240670
Effective search space used: 3668240670
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003302
(1082 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852677.1| PREDICTED: similar to phosphatidylinositol glyc... 301 2e-95
>ref|XP_852677.1| PREDICTED: similar to phosphatidylinositol glycan, class M [Canis
familiaris].
Length = 415
Score = 301 bits (772), Expect(3) = 2e-95
Identities = 156/242 (64%), Positives = 179/242 (73%)
Frame = +1
Query: 211 LNLRVSPSGVFGVAFLARVALVFYGVFQDRTLLVKYTDIDYQVFTDAARFVTEGRSPYLR 390
L LRV P+GVFG AF+ARVALV YG FQDR LLV+YTD+DY+VFTDAAR +++GRSPYLR
Sbjct: 5 LGLRVRPAGVFGAAFVARVALVLYGAFQDRALLVRYTDVDYRVFTDAARLLSQGRSPYLR 64
Query: 391 ATYRYTPLLGWLLTPNIYVSELFGKFLFISFDXXXXXXXXXXXXXXXXGQRQACGYCVFW 570
ATYRYTPLL WLLTPN+++ E FGK LFIS D G+R ACGYC W
Sbjct: 65 ATYRYTPLLAWLLTPNVHLCEPFGKLLFISCDLLAAWPLYRLLLLRGLGRRGACGYCALW 124
Query: 571 LLNPLPMAVSSRGNADSIVASLVLMALYLIEKKFVARAAVFYGFAVHLKMYPVTYILPIA 750
LLNPLPMAVSSRGNAD++VA+LVL ALYL+ + +A AAV YG AVHLK+YPVTYILPIA
Sbjct: 125 LLNPLPMAVSSRGNADALVAALVLAALYLLARGRLACAAVAYGLAVHLKLYPVTYILPIA 184
Query: 751 LHLLPERDREEDLRQSRYSFHARLFEFLKRLCNRAVLLFAAVAGLTFFALSFGFYYKYGW 930
LHL + AR L+ LC+RAVLLFAAVAGLTF ALS GFY +YGW
Sbjct: 185 LHLRRGAPPPAP-APAPAPRRARASALLRALCSRAVLLFAAVAGLTFCALSLGFYRRYGW 243
Query: 931 EF 936
EF
Sbjct: 244 EF 245
Score = 49.3 bits (116), Expect(3) = 2e-95
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = +2
Query: 983 HFSPYFYMLYLTAESKWSFPPGIAAFLP 1066
+FSPYFYMLYLTAES WS G+AAFLP
Sbjct: 262 NFSPYFYMLYLTAESPWSPALGVAAFLP 289
Score = 39.3 bits (90), Expect(3) = 2e-95
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 936 LEHTYLYHLTRRDIRH 983
LEHTYLYHLTRRDIRH
Sbjct: 246 LEHTYLYHLTRRDIRH 261
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,166,915
Number of extensions: 1207520
Number of successful extensions: 4782
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4758
Number of HSP's successfully gapped: 3
Length of query: 360
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 256
Effective length of database: 15,407,560
Effective search space: 3944335360
Effective search space used: 3944335360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003302
(1082 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_660150.1| GPI mannosyltransferase 1 [Homo sapiens]. 421 e-132
>ref|NP_660150.1| GPI mannosyltransferase 1 [Homo sapiens].
Length = 423
Score = 421 bits (1081), Expect(3) = e-132
Identities = 205/253 (81%), Positives = 221/253 (87%)
Frame = +1
Query: 178 MGSATHWGEWFLNLRVSPSGVFGVAFLARVALVFYGVFQDRTLLVKYTDIDYQVFTDAAR 357
MGS HWGEW LNL+V+P+GVFGVAFLARVALVFYGVFQDRTL V+YTDIDYQVFTDAAR
Sbjct: 1 MGSTKHWGEWLLNLKVAPAGVFGVAFLARVALVFYGVFQDRTLHVRYTDIDYQVFTDAAR 60
Query: 358 FVTEGRSPYLRATYRYTPLLGWLLTPNIYVSELFGKFLFISFDXXXXXXXXXXXXXXXXG 537
FVTEGRSPYLRATYRYTPLLGWLLTPNIY+SELFGKFLFIS D G
Sbjct: 61 FVTEGRSPYLRATYRYTPLLGWLLTPNIYLSELFGKFLFISCDLLTAFLLYRLLLLKGLG 120
Query: 538 QRQACGYCVFWLLNPLPMAVSSRGNADSIVASLVLMALYLIEKKFVARAAVFYGFAVHLK 717
+RQACGYCVFWLLNPLPMAVSSRGNADSIVASLVLM LYLI+K+ VA AAVFYGFAVH+K
Sbjct: 121 RRQACGYCVFWLLNPLPMAVSSRGNADSIVASLVLMVLYLIKKRLVACAAVFYGFAVHMK 180
Query: 718 MYPVTYILPIALHLLPERDREEDLRQSRYSFHARLFEFLKRLCNRAVLLFAAVAGLTFFA 897
+YPVTYILPI LHLLP+RD ++ LRQ RY+F A L+E LKRLCNRAVLLF AVAGLTFFA
Sbjct: 181 IYPVTYILPITLHLLPDRDNDKSLRQFRYTFQACLYELLKRLCNRAVLLFVAVAGLTFFA 240
Query: 898 LSFGFYYKYGWEF 936
LSFGFYY+YGWEF
Sbjct: 241 LSFGFYYEYGWEF 253
Score = 55.8 bits (133), Expect(3) = e-132
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = +2
Query: 983 HFSPYFYMLYLTAESKWSFPPGIAAFLP 1066
+FSPYFYMLYLTAESKWSF GIAAFLP
Sbjct: 270 NFSPYFYMLYLTAESKWSFSLGIAAFLP 297
Score = 37.7 bits (86), Expect(3) = e-132
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +3
Query: 936 LEHTYLYHLTRRDIRH 983
LEHTY YHLTRRDIRH
Sbjct: 254 LEHTYFYHLTRRDIRH 269
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,418,994
Number of extensions: 1185248
Number of successful extensions: 4373
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4361
Number of HSP's successfully gapped: 3
Length of query: 360
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 256
Effective length of database: 14,868,908
Effective search space: 3806440448
Effective search space used: 3806440448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003302
(1082 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080510.1| GPI mannosyltransferase 1 [Mus musculus]. 409 e-129
>ref|NP_080510.1| GPI mannosyltransferase 1 [Mus musculus].
Length = 423
Score = 409 bits (1052), Expect(3) = e-129
Identities = 200/253 (79%), Positives = 215/253 (84%)
Frame = +1
Query: 178 MGSATHWGEWFLNLRVSPSGVFGVAFLARVALVFYGVFQDRTLLVKYTDIDYQVFTDAAR 357
M HWGEW LN RV P+GVFGVAFLARVALVFYGVFQDRTLLV+YTDIDY VFTDAAR
Sbjct: 1 MSYPMHWGEWILNFRVPPAGVFGVAFLARVALVFYGVFQDRTLLVRYTDIDYHVFTDAAR 60
Query: 358 FVTEGRSPYLRATYRYTPLLGWLLTPNIYVSELFGKFLFISFDXXXXXXXXXXXXXXXXG 537
FVTEGRSPYLRATYRYTPLL WLLTPN+Y+SELFGKFLFIS D G
Sbjct: 61 FVTEGRSPYLRATYRYTPLLSWLLTPNVYLSELFGKFLFISCDLLTAFLLYRLLLLKGLG 120
Query: 538 QRQACGYCVFWLLNPLPMAVSSRGNADSIVASLVLMALYLIEKKFVARAAVFYGFAVHLK 717
+RQACGYCVFWLLNPLPMAVSSRGNADSIVASLVL LY IEK+ +A AAVFYGFAVH+K
Sbjct: 121 RRQACGYCVFWLLNPLPMAVSSRGNADSIVASLVLSTLYFIEKRLIACAAVFYGFAVHMK 180
Query: 718 MYPVTYILPIALHLLPERDREEDLRQSRYSFHARLFEFLKRLCNRAVLLFAAVAGLTFFA 897
MYPVTYILPIALHL PERD +E LRQ+R+SF ARL++FL+RLC+ AVLLF AVAGLTF A
Sbjct: 181 MYPVTYILPIALHLRPERDDDERLRQARFSFQARLYDFLRRLCSWAVLLFVAVAGLTFVA 240
Query: 898 LSFGFYYKYGWEF 936
LSFGFYYKYGWEF
Sbjct: 241 LSFGFYYKYGWEF 253
Score = 55.8 bits (133), Expect(3) = e-129
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = +2
Query: 983 HFSPYFYMLYLTAESKWSFPPGIAAFLP 1066
+FSPYFYMLYLTAESKWSF GIAAFLP
Sbjct: 270 NFSPYFYMLYLTAESKWSFTLGIAAFLP 297
Score = 37.7 bits (86), Expect(3) = e-129
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +3
Query: 936 LEHTYLYHLTRRDIRH 983
LEHTY YHLTRRDIRH
Sbjct: 254 LEHTYFYHLTRRDIRH 269
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,047,491
Number of extensions: 996321
Number of successful extensions: 3856
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3839
Number of HSP's successfully gapped: 3
Length of query: 360
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 257
Effective length of database: 12,523,851
Effective search space: 3218629707
Effective search space used: 3218629707
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003302
(1082 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355152.1| PREDICTED: GPI mannosyltransferase 1-like [S... 476 e-151
>ref|XP_003355152.1| PREDICTED: GPI mannosyltransferase 1-like [Sus scrofa].
Length = 423
Score = 476 bits (1226), Expect(3) = e-151
Identities = 236/253 (93%), Positives = 237/253 (93%)
Frame = +1
Query: 178 MGSATHWGEWFLNLRVSPSGVFGVAFLARVALVFYGVFQDRTLLVKYTDIDYQVFTDAAR 357
MGSATHWGEWFLNLRVSPSGVFGVAFLARVALVFYGVFQDRTLLVKYTDIDYQVFTDAAR
Sbjct: 1 MGSATHWGEWFLNLRVSPSGVFGVAFLARVALVFYGVFQDRTLLVKYTDIDYQVFTDAAR 60
Query: 358 FVTEGRSPYLRATYRYTPLLGWLLTPNIYVSELFGKFLFISFDXXXXXXXXXXXXXXXXG 537
FVTEGRSPYLRATYRYTPLLGWLLTPNIYVSELFGKFLFISFD G
Sbjct: 61 FVTEGRSPYLRATYRYTPLLGWLLTPNIYVSELFGKFLFISFDLLTAFLLYRLLLLKGLG 120
Query: 538 QRQACGYCVFWLLNPLPMAVSSRGNADSIVASLVLMALYLIEKKFVARAAVFYGFAVHLK 717
QRQACGYCVFWLLNPLPMAVSSRGNADSIVASLVLMALYLIEKKFVARAAVFYGFAVHLK
Sbjct: 121 QRQACGYCVFWLLNPLPMAVSSRGNADSIVASLVLMALYLIEKKFVARAAVFYGFAVHLK 180
Query: 718 MYPVTYILPIALHLLPERDREEDLRQSRYSFHARLFEFLKRLCNRAVLLFAAVAGLTFFA 897
MYPVTYILPIALHLLPERDREEDLRQSRYSFHARLF+FLKRLCNRAVLLFAAVAGLTFFA
Sbjct: 181 MYPVTYILPIALHLLPERDREEDLRQSRYSFHARLFQFLKRLCNRAVLLFAAVAGLTFFA 240
Query: 898 LSFGFYYKYGWEF 936
LSFGFYYKYGWEF
Sbjct: 241 LSFGFYYKYGWEF 253
Score = 58.9 bits (141), Expect(3) = e-151
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = +2
Query: 983 HFSPYFYMLYLTAESKWSFPPGIAAFLP 1066
+FSPYFYMLYLTAESKWSFP GIAAFLP
Sbjct: 270 NFSPYFYMLYLTAESKWSFPLGIAAFLP 297
Score = 39.3 bits (90), Expect(3) = e-151
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 936 LEHTYLYHLTRRDIRH 983
LEHTYLYHLTRRDIRH
Sbjct: 254 LEHTYLYHLTRRDIRH 269
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,672,955
Number of extensions: 758455
Number of successful extensions: 2996
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2987
Number of HSP's successfully gapped: 3
Length of query: 360
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 260
Effective length of database: 8,854,232
Effective search space: 2302100320
Effective search space used: 2302100320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003302
(1082 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 2014 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 2014 bits (1016), Expect = 0.0
Identities = 1068/1084 (98%), Gaps = 3/1084 (0%)
Strand = Plus / Minus
Query: 2 cctgtcggaagtggtcgctaggcagatgtttcggtaagagattgtaggagatgtttcagc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98434800 cctgtcggaagtggtcgctaggcagatgtttcggtaagagattgtaggagatgtttcagc 98434741
Query: 62 agcctagttggtaggagatgtacgaatagtgtgagacaaggaacggaagccagagtcaga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98434740 agcctagttggtaggagatgtacgaatagtgtgagacaaggaacggaagccagagtcaga 98434681
Query: 122 cgtccctttgaaggcagtttggatttggggctgcgctgctgtggtgcagtcagaccatgg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98434680 cgtccctttgaaggcagtttggatttggggctgcgctgctgtggtgcagtcagaccatgg 98434621
Query: 182 gctcggccacgcactggggagagtggttcctgaacctgcgggtgtccccctccggggtat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98434620 gctcggccacgcactggggagagtggttcctgaacctgcgggtgtccccctccggggtat 98434561
Query: 242 ttggtgtggccttccttgcgcgagtggccctggttttctatggggtcttccaggaccgga 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98434560 ttggtgtggccttccttgcgcgagtggccctggttttctatggggtcttccaggaccgga 98434501
Query: 302 ccctgctcgtgaagtacacagacatcgactaccaggtcttcacggacgccgcgcgcttcg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98434500 ccctgctcgtgaagtacacagacatcgactaccaggtcttcacggacgccgcgcgcttcg 98434441
Query: 362 tgacggaagggcgctccccttacctgagggcgacctaccgttacacaccgctgctggggt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98434440 tgacggaagggcgctccccttacctgagggcgacctaccgttacacaccgctgctggggt 98434381
Query: 422 ggcttctcactcccaacatctatgttagtgaactctttggaaagtttctcttcatcagct 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98434380 ggcttctcactcccaacatctatgttagtgaactctttggaaagtttctcttcatcagct 98434321
Query: 482 tcgacctcctcaccgccttcctcttataccgtctgctgctgcttaaggggctgggccaac 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98434320 tcgacctcctcaccgccttcctcttataccgtctgctgctgcttaaggggctgggccaac 98434261
Query: 542 gtcaggcttgcggttactgtgtcttttggcttcttaaccccctacctatggcggtgtcca 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98434260 gtcaggcttgcggttactgtgtcttttggcttcttaaccccctacctatggcggtgtcca 98434201
Query: 602 gccgaggcaatgcggactcgatcgtcgcctccctggtgcttatggccttgtacctaatag 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98434200 gccgaggcaatgcggactcgatcgtcgcctccctggtgcttatggccttgtacctaatag 98434141
Query: 662 nnnnnnnnttcgtcgcgcgtgccgctgtattctatggtttcgcagtgcatttgaagatgt 721
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98434140 aaaaaaaattcgtcgcgcgtgccgctgtattctatggtttcgcagtgcatttgaagatgt 98434081
Query: 722 atccagtgacctatatccttcccatagccctccacttactcccggaacgcgaccgtgaag 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98434080 atccagtgacctatatccttcccatagccctccacttactcccggaacgcgaccgtgaag 98434021
Query: 782 aagacctccgtcaatcccggtattctttccacgctcgcttgttcgaattcctgaagaggc 841
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 98434020 aagacctccgtcaatcccggtattctttccacgctcgcttgttccaattcctgaagaggc 98433961
Query: 842 tgtgtaatcgggctgtgctgctcttcgcagcggttgctggacttacattttttgccctga 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98433960 tgtgtaatcgggctgtgctgctcttcgcagcggttgctggacttacattttttgccctga 98433901
Query: 902 gcttcggtttttactacaaatatggttgggag-ttttggagcacacctacctgtatcacc 960
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 98433900 gcttcggtttttactacaaatatggttgggagtttttggagcacacctacctgtatcacc 98433841
Query: 961 tgaccagacgggatatccgccac-acttctctccatacttctacatgctgtatttgactg 1019
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 98433840 tgaccagacgggatatccgccacaacttctctccatacttctacatgctgtatttgactg 98433781
Query: 1020 cagaaagcaagtggagttttccccctgggatcgctgcattcctgcc-cagttaatcttgc 1078
|||| ||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct: 98433780 cagagagcaagtggagttttcccctgggaatcgctgcattcctgccacagttaatcttgc 98433721
Query: 1079 tttt 1082
||||
Sbjct: 98433720 tttt 98433717
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,920,713
Number of extensions: 101
Number of successful extensions: 101
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 2
Length of query: 1082
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1061
Effective length of database: 2,808,413,156
Effective search space: 2979726358516
Effective search space used: 2979726358516
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)