Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003305
(1067 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039450.1| vinexin [Bos taurus]. 467 e-132
Alignment gi|NP_001068637.2| sorbin and SH3 domain-containing protein 1 [... 184 1e-46
Alignment gi|NP_001091534.1| putative E3 ubiquitin-protein ligase SH3RF1 ... 82 8e-16
Alignment gi|XP_002694364.1| PREDICTED: SH3 domain containing 19 isoform ... 79 9e-15
Alignment gi|XP_002694363.1| PREDICTED: SH3 domain containing 19 isoform ... 79 9e-15
Alignment gi|XP_002694362.1| PREDICTED: SH3 domain containing 19 isoform ... 79 9e-15
Alignment gi|XP_002701676.1| PREDICTED: SH3 domain containing 19 [Bos tau... 79 9e-15
Alignment gi|XP_002701675.1| PREDICTED: SH3 domain containing 19 [Bos tau... 79 9e-15
Alignment gi|XP_615615.4| PREDICTED: SH3 domain containing 19 isoform 3 [... 79 9e-15
Alignment gi|NP_001077222.1| SH3 domain containing ring finger 2 [Bos tau... 76 4e-14
>ref|NP_001039450.1| vinexin [Bos taurus].
Length = 662
Score = 467 bits (1202), Expect = e-132
Identities = 232/284 (81%), Positives = 238/284 (83%)
Frame = +1
Query: 166 WSASSPNALYQGSSLSPHRMADGGSPFLGCRDFVYPSSTRDPSASERGASPXXXXXXXXX 345
WS+SSPNALY SSLSPHRMADGGSPFLG RDFVYPSS RDPSAS+ G SP
Sbjct: 316 WSSSSPNALYPSSSLSPHRMADGGSPFLGRRDFVYPSSARDPSASDPGGSPARKEEKKRK 375
Query: 346 XXXLKFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIP 525
LKFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHG LGIFPANYVEVLPADEIP
Sbjct: 376 AARLKFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPADEIP 435
Query: 526 KPIKPPTYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQG 705
KPIKPPTYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQG
Sbjct: 436 KPIKPPTYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQG 495
Query: 706 IFPASYVQVSREPRLRLCEDGPQLPASPRLNATRLAXXXXXXXXXXXXADPTDWGGRTSP 885
IFPASYVQV+REPR+RLC+DGPQLPASPRL RL ADPTDWG +TSP
Sbjct: 496 IFPASYVQVTREPRVRLCDDGPQLPASPRLPTARLVCRPSSPLTPRSPADPTDWGVQTSP 555
Query: 886 RRTGFSFPAQEPRPQTQSLSTPGSALSHPGVSSRPLDPGNSSLT 1017
RRTGFS P QE RPQTQSLSTP SALSHPG SS P D G SS T
Sbjct: 556 RRTGFSLPPQESRPQTQSLSTPRSALSHPGGSSHPPDLGTSSST 599
>ref|NP_001068637.2| sorbin and SH3 domain-containing protein 1 [Bos taurus].
Length = 750
Score = 184 bits (467), Expect = 1e-46
Identities = 87/143 (60%), Positives = 111/143 (77%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIK 537
KFDF+AQ+ KEL L+KGDIVYI+K++D+NW EGEHHG +GIFP Y+E+LP E +P K
Sbjct: 517 KFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLPPAEKAQPKK 576
Query: 538 PPTYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
QVLEYGEA+A++NF GD +VE+SFRKGERI L+R+V+E+WYEGRI GT RQGIFP
Sbjct: 577 LTPVQVLEYGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPI 636
Query: 718 SYVQVSREPRLRLCEDGPQLPAS 786
+YV V + P ++ D LP S
Sbjct: 637 TYVDVIKRPLVKNPTDYIDLPFS 659
Score = 58.2 bits (139), Expect = 1e-08
Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 34/158 (21%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGL--GIFPANYVEVL-------P 510
KF+F + E++ +KG+ + + ++VD+NW EG G GIFP YV+V+ P
Sbjct: 591 KFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKRPLVKNP 650
Query: 511 ADEIPKPI-------------------------KPPTYQVLEYGEAVAQYNFKGDLEVEL 615
D I P + T Q L +A+ Y + D E+EL
Sbjct: 651 TDYIDLPFSSSPSRSTTASPQQPQAQQRRVAPDRSQTSQDLFSYQALYSYIPQNDDELEL 710
Query: 616 SFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQ 729
R G+ + ++ K ++ W+ G T + G FP +YV+
Sbjct: 711 --RDGDIVDVMEKCDDGWFVGTSRRTRQFGTFPGNYVK 746
>ref|NP_001091534.1| putative E3 ubiquitin-protein ligase SH3RF1 [Bos taurus].
Length = 840
Score = 82.0 bits (201), Expect = 8e-16
Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 4/174 (2%)
Frame = +1
Query: 271 PSSTRDPSASERGASPXXXXXXXXXXXXLKFDFQAQSPKELTLKKGDIVYIHKEVDKNWL 450
PSS P + SP ++++ + P +L KGDI+ + ++VD+NW
Sbjct: 113 PSSQGGPQPRAQAWSPPVRGIPQLPCAKALYNYEGKEPGDLKFSKGDIIVLRRQVDENWY 172
Query: 451 EGEHHGGLGIFPANYVEVLPADEIPKPIKPPTYQVLEYGEAVAQYNFK-GDLEVE---LS 618
GE G G FP N+V+++ P P PP + A Y+F+ D E + L
Sbjct: 173 HGEVGGVHGFFPTNFVQIIK----PLPQPPP--------QCKALYDFEVKDKEADKDCLP 220
Query: 619 FRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQVSREPRLRLCEDGPQLP 780
F K + + +IR+V+E+W EG ++ + GIFP SYV+ + + + D P P
Sbjct: 221 FAKDDVLTVIRRVDENWAEGMLA--DKIGIFPISYVEFNSAAKQLIEWDQPPGP 272
>ref|XP_002694364.1| PREDICTED: SH3 domain containing 19 isoform 3 [Bos taurus].
Length = 727
Score = 78.6 bits (192), Expect = 9e-15
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 3/182 (1%)
Frame = +1
Query: 196 QGSSLSPHRMADGGSPFLGCRDFVYPSSTRDPSASERGASPXXXXXXXXXXXXLKFDFQA 375
+G+ L + D G L + P S + P + DF A
Sbjct: 387 EGNYLECRKGDDAGRVHLSQMKIITPLDEHLSSRPNDPSCPQKPVDSAAPHAIVLHDFPA 446
Query: 376 QSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIP---KPIKPPT 546
+ +L+L G+IVY+ +++D +W G+ G+FPANYV+V+ ++P + +
Sbjct: 447 EQADDLSLTSGEIVYLLEKIDTDWYRGKCRNQTGVFPANYVKVI--IDVPGGNGKRESIS 504
Query: 547 YQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYV 726
++ VA++ + GD + ELSF +GE I L VN+ W G + R GIFP ++V
Sbjct: 505 SHCVKGPRCVARFEYIGDQKDELSFSEGEIIILKEYVNDEWARGELG--DRSGIFPLNFV 562
Query: 727 QV 732
++
Sbjct: 563 EL 564
Score = 73.2 bits (178), Expect = 4e-13
Identities = 42/121 (34%), Positives = 67/121 (55%)
Frame = +1
Query: 367 FQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKPPT 546
F A++ ++L+ K+GD + I + VD +W +G GIFPA +V A+ K
Sbjct: 609 FMAETSEDLSFKRGDRILILERVDSDWYKGRLRDREGIFPAVFVRPCSAE-----AKGVA 663
Query: 547 YQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYV 726
L+ +A A Y+F G+ E ELSF+ G+ I + V++ W G + G+ GIFP +Y+
Sbjct: 664 ALSLKGRKAKALYDFHGENEDELSFKAGDIITELESVDDDWMSGEL--MGKSGIFPKTYI 721
Query: 727 Q 729
Q
Sbjct: 722 Q 722
Score = 68.9 bits (167), Expect = 7e-12
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVL-----PADEI 522
+F++ EL+ +G+I+ + + V+ W GE GIFP N+VE++ +
Sbjct: 516 RFEYIGDQKDELSFSEGEIIILKEYVNDEWARGELGDRSGIFPLNFVELIEDHPTSGTNV 575
Query: 523 PKPIKPPTYQVLEYGE-----------AVAQYNFKGDLEVELSFRKGERICLIRKVNEHW 669
PP + + G A ++F + +LSF++G+RI ++ +V+ W
Sbjct: 576 LSTKVPPKTKKEDSGANSQENNLCGEWCEALHSFMAETSEDLSFKRGDRILILERVDSDW 635
Query: 670 YEGRISGTGRQGIFPASYVQ 729
Y+GR+ R+GIFPA +V+
Sbjct: 636 YKGRL--RDREGIFPAVFVR 653
>ref|XP_002694363.1| PREDICTED: SH3 domain containing 19 isoform 2 [Bos taurus].
Length = 763
Score = 78.6 bits (192), Expect = 9e-15
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 3/182 (1%)
Frame = +1
Query: 196 QGSSLSPHRMADGGSPFLGCRDFVYPSSTRDPSASERGASPXXXXXXXXXXXXLKFDFQA 375
+G+ L + D G L + P S + P + DF A
Sbjct: 423 EGNYLECRKGDDAGRVHLSQMKIITPLDEHLSSRPNDPSCPQKPVDSAAPHAIVLHDFPA 482
Query: 376 QSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIP---KPIKPPT 546
+ +L+L G+IVY+ +++D +W G+ G+FPANYV+V+ ++P + +
Sbjct: 483 EQADDLSLTSGEIVYLLEKIDTDWYRGKCRNQTGVFPANYVKVI--IDVPGGNGKRESIS 540
Query: 547 YQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYV 726
++ VA++ + GD + ELSF +GE I L VN+ W G + R GIFP ++V
Sbjct: 541 SHCVKGPRCVARFEYIGDQKDELSFSEGEIIILKEYVNDEWARGELG--DRSGIFPLNFV 598
Query: 727 QV 732
++
Sbjct: 599 EL 600
Score = 73.2 bits (178), Expect = 4e-13
Identities = 42/121 (34%), Positives = 67/121 (55%)
Frame = +1
Query: 367 FQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKPPT 546
F A++ ++L+ K+GD + I + VD +W +G GIFPA +V A+ K
Sbjct: 645 FMAETSEDLSFKRGDRILILERVDSDWYKGRLRDREGIFPAVFVRPCSAE-----AKGVA 699
Query: 547 YQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYV 726
L+ +A A Y+F G+ E ELSF+ G+ I + V++ W G + G+ GIFP +Y+
Sbjct: 700 ALSLKGRKAKALYDFHGENEDELSFKAGDIITELESVDDDWMSGEL--MGKSGIFPKTYI 757
Query: 727 Q 729
Q
Sbjct: 758 Q 758
Score = 68.9 bits (167), Expect = 7e-12
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVL-----PADEI 522
+F++ EL+ +G+I+ + + V+ W GE GIFP N+VE++ +
Sbjct: 552 RFEYIGDQKDELSFSEGEIIILKEYVNDEWARGELGDRSGIFPLNFVELIEDHPTSGTNV 611
Query: 523 PKPIKPPTYQVLEYGE-----------AVAQYNFKGDLEVELSFRKGERICLIRKVNEHW 669
PP + + G A ++F + +LSF++G+RI ++ +V+ W
Sbjct: 612 LSTKVPPKTKKEDSGANSQENNLCGEWCEALHSFMAETSEDLSFKRGDRILILERVDSDW 671
Query: 670 YEGRISGTGRQGIFPASYVQ 729
Y+GR+ R+GIFPA +V+
Sbjct: 672 YKGRL--RDREGIFPAVFVR 689
>ref|XP_002694362.1| PREDICTED: SH3 domain containing 19 isoform 1 [Bos taurus].
Length = 786
Score = 78.6 bits (192), Expect = 9e-15
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 3/182 (1%)
Frame = +1
Query: 196 QGSSLSPHRMADGGSPFLGCRDFVYPSSTRDPSASERGASPXXXXXXXXXXXXLKFDFQA 375
+G+ L + D G L + P S + P + DF A
Sbjct: 446 EGNYLECRKGDDAGRVHLSQMKIITPLDEHLSSRPNDPSCPQKPVDSAAPHAIVLHDFPA 505
Query: 376 QSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIP---KPIKPPT 546
+ +L+L G+IVY+ +++D +W G+ G+FPANYV+V+ ++P + +
Sbjct: 506 EQADDLSLTSGEIVYLLEKIDTDWYRGKCRNQTGVFPANYVKVI--IDVPGGNGKRESIS 563
Query: 547 YQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYV 726
++ VA++ + GD + ELSF +GE I L VN+ W G + R GIFP ++V
Sbjct: 564 SHCVKGPRCVARFEYIGDQKDELSFSEGEIIILKEYVNDEWARGELG--DRSGIFPLNFV 621
Query: 727 QV 732
++
Sbjct: 622 EL 623
Score = 73.2 bits (178), Expect = 4e-13
Identities = 42/121 (34%), Positives = 67/121 (55%)
Frame = +1
Query: 367 FQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKPPT 546
F A++ ++L+ K+GD + I + VD +W +G GIFPA +V A+ K
Sbjct: 668 FMAETSEDLSFKRGDRILILERVDSDWYKGRLRDREGIFPAVFVRPCSAE-----AKGVA 722
Query: 547 YQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYV 726
L+ +A A Y+F G+ E ELSF+ G+ I + V++ W G + G+ GIFP +Y+
Sbjct: 723 ALSLKGRKAKALYDFHGENEDELSFKAGDIITELESVDDDWMSGEL--MGKSGIFPKTYI 780
Query: 727 Q 729
Q
Sbjct: 781 Q 781
Score = 68.9 bits (167), Expect = 7e-12
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVL-----PADEI 522
+F++ EL+ +G+I+ + + V+ W GE GIFP N+VE++ +
Sbjct: 575 RFEYIGDQKDELSFSEGEIIILKEYVNDEWARGELGDRSGIFPLNFVELIEDHPTSGTNV 634
Query: 523 PKPIKPPTYQVLEYGE-----------AVAQYNFKGDLEVELSFRKGERICLIRKVNEHW 669
PP + + G A ++F + +LSF++G+RI ++ +V+ W
Sbjct: 635 LSTKVPPKTKKEDSGANSQENNLCGEWCEALHSFMAETSEDLSFKRGDRILILERVDSDW 694
Query: 670 YEGRISGTGRQGIFPASYVQ 729
Y+GR+ R+GIFPA +V+
Sbjct: 695 YKGRL--RDREGIFPAVFVR 712
Score = 57.8 bits (138), Expect = 2e-08
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 15/155 (9%)
Frame = +1
Query: 364 DFQAQSPKELTLKKGDIVYIHKEVDKNWLE---GEHHGGLGIFPANYVEVLPADEIPKPI 534
D Q+P EL+ K+GD++ I K+ + N+LE G+ G + + + L +P
Sbjct: 422 DVIPQNPGELSCKRGDVLVILKQAEGNYLECRKGDDAGRVHLSQMKIITPLDEHLSSRPN 481
Query: 535 KPPTYQV---LEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQG 705
P Q A+ ++F + +LS GE + L+ K++ WY G+ + G
Sbjct: 482 DPSCPQKPVDSAAPHAIVLHDFPAEQADDLSLTSGEIVYLLEKIDTDWYRGKC--RNQTG 539
Query: 706 IFPASYVQV---------SREPRLRLCEDGPQLPA 783
+FPA+YV+V RE C GP+ A
Sbjct: 540 VFPANYVKVIIDVPGGNGKRESISSHCVKGPRCVA 574
>ref|XP_002701676.1| PREDICTED: SH3 domain containing 19 [Bos taurus].
Length = 727
Score = 78.6 bits (192), Expect = 9e-15
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 3/182 (1%)
Frame = +1
Query: 196 QGSSLSPHRMADGGSPFLGCRDFVYPSSTRDPSASERGASPXXXXXXXXXXXXLKFDFQA 375
+G+ L + D G L + P S + P + DF A
Sbjct: 387 EGNYLECRKGDDAGRVHLSQMKIITPLDEHLSSRPNDPSCPQKPVDSAAPHAIVLHDFPA 446
Query: 376 QSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIP---KPIKPPT 546
+ +L+L G+IVY+ +++D +W G+ G+FPANYV+V+ ++P + +
Sbjct: 447 EQADDLSLTSGEIVYLLEKIDTDWYRGKCRNQTGVFPANYVKVI--IDVPGGNGKRESIS 504
Query: 547 YQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYV 726
++ VA++ + GD + ELSF +GE I L VN+ W G + R GIFP ++V
Sbjct: 505 SHCVKGPRCVARFEYIGDQKDELSFSEGEIIILKEYVNDEWARGELG--DRSGIFPLNFV 562
Query: 727 QV 732
++
Sbjct: 563 EL 564
Score = 73.2 bits (178), Expect = 4e-13
Identities = 42/121 (34%), Positives = 67/121 (55%)
Frame = +1
Query: 367 FQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKPPT 546
F A++ ++L+ K+GD + I + VD +W +G GIFPA +V A+ K
Sbjct: 609 FMAETSEDLSFKRGDRILILERVDSDWYKGRLRDREGIFPAVFVRPCSAE-----AKGVA 663
Query: 547 YQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYV 726
L+ +A A Y+F G+ E ELSF+ G+ I + V++ W G + G+ GIFP +Y+
Sbjct: 664 ALSLKGRKAKALYDFHGENEDELSFKAGDIITELESVDDDWMSGEL--MGKSGIFPKTYI 721
Query: 727 Q 729
Q
Sbjct: 722 Q 722
Score = 68.9 bits (167), Expect = 7e-12
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVL-----PADEI 522
+F++ EL+ +G+I+ + + V+ W GE GIFP N+VE++ +
Sbjct: 516 RFEYIGDQKDELSFSEGEIIILKEYVNDEWARGELGDRSGIFPLNFVELIEDHPTSGTNV 575
Query: 523 PKPIKPPTYQVLEYGE-----------AVAQYNFKGDLEVELSFRKGERICLIRKVNEHW 669
PP + + G A ++F + +LSF++G+RI ++ +V+ W
Sbjct: 576 LSTKVPPKTKKEDSGANSQENNLCGEWCEALHSFMAETSEDLSFKRGDRILILERVDSDW 635
Query: 670 YEGRISGTGRQGIFPASYVQ 729
Y+GR+ R+GIFPA +V+
Sbjct: 636 YKGRL--RDREGIFPAVFVR 653
>ref|XP_002701675.1| PREDICTED: SH3 domain containing 19 [Bos taurus].
Length = 763
Score = 78.6 bits (192), Expect = 9e-15
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 3/182 (1%)
Frame = +1
Query: 196 QGSSLSPHRMADGGSPFLGCRDFVYPSSTRDPSASERGASPXXXXXXXXXXXXLKFDFQA 375
+G+ L + D G L + P S + P + DF A
Sbjct: 423 EGNYLECRKGDDAGRVHLSQMKIITPLDEHLSSRPNDPSCPQKPVDSAAPHAIVLHDFPA 482
Query: 376 QSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIP---KPIKPPT 546
+ +L+L G+IVY+ +++D +W G+ G+FPANYV+V+ ++P + +
Sbjct: 483 EQADDLSLTSGEIVYLLEKIDTDWYRGKCRNQTGVFPANYVKVI--IDVPGGNGKRESIS 540
Query: 547 YQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYV 726
++ VA++ + GD + ELSF +GE I L VN+ W G + R GIFP ++V
Sbjct: 541 SHCVKGPRCVARFEYIGDQKDELSFSEGEIIILKEYVNDEWARGELG--DRSGIFPLNFV 598
Query: 727 QV 732
++
Sbjct: 599 EL 600
Score = 73.2 bits (178), Expect = 4e-13
Identities = 42/121 (34%), Positives = 67/121 (55%)
Frame = +1
Query: 367 FQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKPPT 546
F A++ ++L+ K+GD + I + VD +W +G GIFPA +V A+ K
Sbjct: 645 FMAETSEDLSFKRGDRILILERVDSDWYKGRLRDREGIFPAVFVRPCSAE-----AKGVA 699
Query: 547 YQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYV 726
L+ +A A Y+F G+ E ELSF+ G+ I + V++ W G + G+ GIFP +Y+
Sbjct: 700 ALSLKGRKAKALYDFHGENEDELSFKAGDIITELESVDDDWMSGEL--MGKSGIFPKTYI 757
Query: 727 Q 729
Q
Sbjct: 758 Q 758
Score = 68.9 bits (167), Expect = 7e-12
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVL-----PADEI 522
+F++ EL+ +G+I+ + + V+ W GE GIFP N+VE++ +
Sbjct: 552 RFEYIGDQKDELSFSEGEIIILKEYVNDEWARGELGDRSGIFPLNFVELIEDHPTSGTNV 611
Query: 523 PKPIKPPTYQVLEYGE-----------AVAQYNFKGDLEVELSFRKGERICLIRKVNEHW 669
PP + + G A ++F + +LSF++G+RI ++ +V+ W
Sbjct: 612 LSTKVPPKTKKEDSGANSQENNLCGEWCEALHSFMAETSEDLSFKRGDRILILERVDSDW 671
Query: 670 YEGRISGTGRQGIFPASYVQ 729
Y+GR+ R+GIFPA +V+
Sbjct: 672 YKGRL--RDREGIFPAVFVR 689
>ref|XP_615615.4| PREDICTED: SH3 domain containing 19 isoform 3 [Bos taurus].
Length = 786
Score = 78.6 bits (192), Expect = 9e-15
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 3/182 (1%)
Frame = +1
Query: 196 QGSSLSPHRMADGGSPFLGCRDFVYPSSTRDPSASERGASPXXXXXXXXXXXXLKFDFQA 375
+G+ L + D G L + P S + P + DF A
Sbjct: 446 EGNYLECRKGDDAGRVHLSQMKIITPLDEHLSSRPNDPSCPQKPVDSAAPHAIVLHDFPA 505
Query: 376 QSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIP---KPIKPPT 546
+ +L+L G+IVY+ +++D +W G+ G+FPANYV+V+ ++P + +
Sbjct: 506 EQADDLSLTSGEIVYLLEKIDTDWYRGKCRNQTGVFPANYVKVI--IDVPGGNGKRESIS 563
Query: 547 YQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYV 726
++ VA++ + GD + ELSF +GE I L VN+ W G + R GIFP ++V
Sbjct: 564 SHCVKGPRCVARFEYIGDQKDELSFSEGEIIILKEYVNDEWARGELG--DRSGIFPLNFV 621
Query: 727 QV 732
++
Sbjct: 622 EL 623
Score = 73.2 bits (178), Expect = 4e-13
Identities = 42/121 (34%), Positives = 67/121 (55%)
Frame = +1
Query: 367 FQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKPPT 546
F A++ ++L+ K+GD + I + VD +W +G GIFPA +V A+ K
Sbjct: 668 FMAETSEDLSFKRGDRILILERVDSDWYKGRLRDREGIFPAVFVRPCSAE-----AKGVA 722
Query: 547 YQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYV 726
L+ +A A Y+F G+ E ELSF+ G+ I + V++ W G + G+ GIFP +Y+
Sbjct: 723 ALSLKGRKAKALYDFHGENEDELSFKAGDIITELESVDDDWMSGEL--MGKSGIFPKTYI 780
Query: 727 Q 729
Q
Sbjct: 781 Q 781
Score = 68.9 bits (167), Expect = 7e-12
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVL-----PADEI 522
+F++ EL+ +G+I+ + + V+ W GE GIFP N+VE++ +
Sbjct: 575 RFEYIGDQKDELSFSEGEIIILKEYVNDEWARGELGDRSGIFPLNFVELIEDHPTSGTNV 634
Query: 523 PKPIKPPTYQVLEYGE-----------AVAQYNFKGDLEVELSFRKGERICLIRKVNEHW 669
PP + + G A ++F + +LSF++G+RI ++ +V+ W
Sbjct: 635 LSTKVPPKTKKEDSGANSQENNLCGEWCEALHSFMAETSEDLSFKRGDRILILERVDSDW 694
Query: 670 YEGRISGTGRQGIFPASYVQ 729
Y+GR+ R+GIFPA +V+
Sbjct: 695 YKGRL--RDREGIFPAVFVR 712
Score = 57.8 bits (138), Expect = 2e-08
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 15/155 (9%)
Frame = +1
Query: 364 DFQAQSPKELTLKKGDIVYIHKEVDKNWLE---GEHHGGLGIFPANYVEVLPADEIPKPI 534
D Q+P EL+ K+GD++ I K+ + N+LE G+ G + + + L +P
Sbjct: 422 DVIPQNPGELSCKRGDVLVILKQAEGNYLECRKGDDAGRVHLSQMKIITPLDEHLSSRPN 481
Query: 535 KPPTYQV---LEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQG 705
P Q A+ ++F + +LS GE + L+ K++ WY G+ + G
Sbjct: 482 DPSCPQKPVDSAAPHAIVLHDFPAEQADDLSLTSGEIVYLLEKIDTDWYRGKC--RNQTG 539
Query: 706 IFPASYVQV---------SREPRLRLCEDGPQLPA 783
+FPA+YV+V RE C GP+ A
Sbjct: 540 VFPANYVKVIIDVPGGNGKRESISSHCVKGPRCVA 574
>ref|NP_001077222.1| SH3 domain containing ring finger 2 [Bos taurus].
Length = 728
Score = 76.3 bits (186), Expect = 4e-14
Identities = 48/151 (31%), Positives = 85/151 (56%), Gaps = 6/151 (3%)
Frame = +1
Query: 364 DFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKPP 543
+++ Q+P +L KGD++ + +++D+NW +GE +G G+FPA+ VEV+ ++P+P PP
Sbjct: 135 NYRGQNPGDLRFNKGDVILLRRQLDENWYQGEINGVSGVFPASSVEVI--KQLPQP--PP 190
Query: 544 TYQVLEYGEAVAQYNF------KGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQG 705
+ L YNF + + + L+F K + I +I +V+E+W EG++ + G
Sbjct: 191 LCRAL--------YNFDLRDKDRSENQDCLTFLKDDIITVISRVDENWAEGKLG--DKVG 240
Query: 706 IFPASYVQVSREPRLRLCEDGPQLPASPRLN 798
IFP +V+ + R L E P+S N
Sbjct: 241 IFPILFVEPNLTAR-HLLEKNKGRPSSRTKN 270
Score = 48.9 bits (115), Expect = 8e-06
Identities = 24/57 (42%), Positives = 38/57 (66%)
Frame = +1
Query: 571 AVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQVSRE 741
A A N++G +L F KG+ I L R+++E+WY+G I+G G+FPAS V+V ++
Sbjct: 130 AKALCNYRGQNPGDLRFNKGDVILLRRQLDENWYQGEINGV--SGVFPASSVEVIKQ 184
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.315 0.134 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,464,363
Number of extensions: 1145814
Number of successful extensions: 5686
Number of sequences better than 1.0e-05: 46
Number of HSP's gapped: 5534
Number of HSP's successfully gapped: 84
Length of query: 355
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 252
Effective length of database: 14,273,310
Effective search space: 3596874120
Effective search space used: 3596874120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003305
(1067 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534577.2| PREDICTED: similar to SH3 domain protein 4 [Can... 395 e-110
Alignment gi|XP_540021.2| PREDICTED: similar to Arg/Abl-interacting prote... 159 4e-39
Alignment gi|XP_856798.1| PREDICTED: similar to Arg/Abl-interacting prote... 159 4e-39
Alignment gi|XP_856757.1| PREDICTED: similar to Arg/Abl-interacting prote... 159 4e-39
Alignment gi|XP_848370.1| PREDICTED: similar to SH3 multiple domains 2 is... 83 5e-16
Alignment gi|XP_855820.1| PREDICTED: similar to putative scaffolding prot... 83 5e-16
Alignment gi|XP_855903.1| PREDICTED: similar to SH3 multiple domains 2 is... 81 1e-15
Alignment gi|XP_855863.1| PREDICTED: similar to SH3 multiple domains 2 is... 81 1e-15
Alignment gi|XP_858579.1| PREDICTED: similar to SH3 domain containing rin... 76 5e-14
Alignment gi|XP_535227.2| PREDICTED: similar to SH3 domain containing rin... 76 5e-14
>ref|XP_534577.2| PREDICTED: similar to SH3 domain protein 4 [Canis familiaris].
Length = 882
Score = 395 bits (1016), Expect = e-110
Identities = 198/250 (79%), Positives = 203/250 (81%), Gaps = 1/250 (0%)
Frame = +1
Query: 271 PSSTRDPSASERGASPXXXXXXXXXXXXLKFDFQAQSPKELTLKKGDIVYIHKEVDKNWL 450
PS R P A+ERGASP LKFDFQAQSPKELTLKKGDIVYIHKEVDKNWL
Sbjct: 571 PSQPRPPDATERGASPVRKEEKKRKAARLKFDFQAQSPKELTLKKGDIVYIHKEVDKNWL 630
Query: 451 EGEHHGGLGIFPANYVEVLPADEIPKPIKPPTYQVLEYGEAVAQYNFKGDLEVELSFRKG 630
EGEHHG LGIFPANYVEVLPADEIPKPIKPPTYQVLEYGEAVAQY FKGDLEVELSFRKG
Sbjct: 631 EGEHHGRLGIFPANYVEVLPADEIPKPIKPPTYQVLEYGEAVAQYTFKGDLEVELSFRKG 690
Query: 631 ERICLIRKVNEHWYEGRISGTGRQGIFPASYVQVSREPRLRLCEDGPQLPASPRLNAT-R 807
ERICLIRKVNE+WYEGRISGTGRQGIFPASYVQV REPRLR+ +DGPQLPASPRL T
Sbjct: 691 ERICLIRKVNENWYEGRISGTGRQGIFPASYVQVCREPRLRISDDGPQLPASPRLTTTAH 750
Query: 808 LAXXXXXXXXXXXXADPTDWGGRTSPRRTGFSFPAQEPRPQTQSLSTPGSALSHPGVSSR 987
LA DPTDWG RTSPRRTGFSFP QEPR QTQ LSTPGS LSHPG SSR
Sbjct: 751 LARHSSSPLTPHSPGDPTDWGSRTSPRRTGFSFPTQEPRAQTQGLSTPGSTLSHPGDSSR 810
Query: 988 PLDPGNSSLT 1017
PLD G + T
Sbjct: 811 PLDLGTPTTT 820
>ref|XP_540021.2| PREDICTED: similar to Arg/Abl-interacting protein 2 isoform 2 isoform
2 [Canis familiaris].
Length = 1200
Score = 159 bits (402), Expect = 4e-39
Identities = 76/151 (50%), Positives = 107/151 (70%), Gaps = 1/151 (0%)
Frame = +1
Query: 361 FDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKP 540
+DF+AQ+ KEL+ KKGD VYI +++D+NW EGEHHG +GIFP +YVE L E +P +P
Sbjct: 971 YDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLIPPEKAQPARP 1030
Query: 541 PT-YQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
P Q E GEA+A+YNF D VELS RKG+R+ L+++V+++WYEG+I GT RQGIFP
Sbjct: 1031 PPPAQPGEIGEAMAKYNFSADTNVELSLRKGDRVILLKRVDQNWYEGKIPGTSRQGIFPV 1090
Query: 718 SYVQVSREPRLRLCEDGPQLPASPRLNATRL 810
SYV+V ++ + E+ P P ++ R+
Sbjct: 1091 SYVEVIKKNTTKGAENYPDPPIPHSYSSDRI 1121
Score = 67.8 bits (164), Expect = 2e-11
Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 30/154 (19%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHG--GLGIFPANYVEVLP------A 513
K++F A + EL+L+KGD V + K VD+NW EG+ G GIFP +YVEV+ A
Sbjct: 1045 KYNFSADTNVELSLRKGDRVILLKRVDQNWYEGKIPGTSRQGIFPVSYVEVIKKNTTKGA 1104
Query: 514 DEIPKPIKPPTY---------------------QVLEYGEAV-AQYNFKGDLEVELSFRK 627
+ P P P +Y + GE A YN+ E EL R+
Sbjct: 1105 ENYPDPPIPHSYSSDRIHSLSSNKPQRPVFTHENIQGGGEPFQALYNYTPRNEDELELRE 1164
Query: 628 GERICLIRKVNEHWYEGRISGTGRQGIFPASYVQ 729
+ I ++ K ++ W+ G T G FP +YV+
Sbjct: 1165 SDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYVK 1198
Score = 57.0 bits (136), Expect = 3e-08
Identities = 31/73 (42%), Positives = 43/73 (58%)
Frame = +1
Query: 571 AVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQVSREPRL 750
A A Y+FK ELSF+KG+ + ++RK++++WYEG GR GIFP SYV+ P
Sbjct: 967 AKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEG--EHHGRVGIFPISYVEKLIPPE- 1023
Query: 751 RLCEDGPQLPASP 789
+ P PA P
Sbjct: 1024 KAQPARPPPPAQP 1036
>ref|XP_856798.1| PREDICTED: similar to Arg/Abl-interacting protein 2 isoform 1
isoform 4 [Canis familiaris].
Length = 621
Score = 159 bits (402), Expect = 4e-39
Identities = 76/151 (50%), Positives = 107/151 (70%), Gaps = 1/151 (0%)
Frame = +1
Query: 361 FDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKP 540
+DF+AQ+ KEL+ KKGD VYI +++D+NW EGEHHG +GIFP +YVE L E +P +P
Sbjct: 392 YDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLIPPEKAQPARP 451
Query: 541 PT-YQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
P Q E GEA+A+YNF D VELS RKG+R+ L+++V+++WYEG+I GT RQGIFP
Sbjct: 452 PPPAQPGEIGEAMAKYNFSADTNVELSLRKGDRVILLKRVDQNWYEGKIPGTSRQGIFPV 511
Query: 718 SYVQVSREPRLRLCEDGPQLPASPRLNATRL 810
SYV+V ++ + E+ P P ++ R+
Sbjct: 512 SYVEVIKKNTTKGAENYPDPPIPHSYSSDRI 542
Score = 67.8 bits (164), Expect = 2e-11
Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 30/154 (19%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHG--GLGIFPANYVEVLP------A 513
K++F A + EL+L+KGD V + K VD+NW EG+ G GIFP +YVEV+ A
Sbjct: 466 KYNFSADTNVELSLRKGDRVILLKRVDQNWYEGKIPGTSRQGIFPVSYVEVIKKNTTKGA 525
Query: 514 DEIPKPIKPPTY---------------------QVLEYGEAV-AQYNFKGDLEVELSFRK 627
+ P P P +Y + GE A YN+ E EL R+
Sbjct: 526 ENYPDPPIPHSYSSDRIHSLSSNKPQRPVFTHENIQGGGEPFQALYNYTPRNEDELELRE 585
Query: 628 GERICLIRKVNEHWYEGRISGTGRQGIFPASYVQ 729
+ I ++ K ++ W+ G T G FP +YV+
Sbjct: 586 SDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYVK 619
Score = 57.0 bits (136), Expect = 3e-08
Identities = 31/73 (42%), Positives = 43/73 (58%)
Frame = +1
Query: 571 AVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQVSREPRL 750
A A Y+FK ELSF+KG+ + ++RK++++WYEG GR GIFP SYV+ P
Sbjct: 388 AKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEG--EHHGRVGIFPISYVEKLIPPE- 444
Query: 751 RLCEDGPQLPASP 789
+ P PA P
Sbjct: 445 KAQPARPPPPAQP 457
>ref|XP_856757.1| PREDICTED: similar to Arg/Abl-interacting protein 2 isoform 1
isoform 3 [Canis familiaris].
Length = 646
Score = 159 bits (402), Expect = 4e-39
Identities = 76/151 (50%), Positives = 107/151 (70%), Gaps = 1/151 (0%)
Frame = +1
Query: 361 FDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKP 540
+DF+AQ+ KEL+ KKGD VYI +++D+NW EGEHHG +GIFP +YVE L E +P +P
Sbjct: 417 YDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLIPPEKAQPARP 476
Query: 541 PT-YQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
P Q E GEA+A+YNF D VELS RKG+R+ L+++V+++WYEG+I GT RQGIFP
Sbjct: 477 PPPAQPGEIGEAMAKYNFSADTNVELSLRKGDRVILLKRVDQNWYEGKIPGTSRQGIFPV 536
Query: 718 SYVQVSREPRLRLCEDGPQLPASPRLNATRL 810
SYV+V ++ + E+ P P ++ R+
Sbjct: 537 SYVEVIKKNTTKGAENYPDPPIPHSYSSDRI 567
Score = 67.8 bits (164), Expect = 2e-11
Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 30/154 (19%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHG--GLGIFPANYVEVLP------A 513
K++F A + EL+L+KGD V + K VD+NW EG+ G GIFP +YVEV+ A
Sbjct: 491 KYNFSADTNVELSLRKGDRVILLKRVDQNWYEGKIPGTSRQGIFPVSYVEVIKKNTTKGA 550
Query: 514 DEIPKPIKPPTY---------------------QVLEYGEAV-AQYNFKGDLEVELSFRK 627
+ P P P +Y + GE A YN+ E EL R+
Sbjct: 551 ENYPDPPIPHSYSSDRIHSLSSNKPQRPVFTHENIQGGGEPFQALYNYTPRNEDELELRE 610
Query: 628 GERICLIRKVNEHWYEGRISGTGRQGIFPASYVQ 729
+ I ++ K ++ W+ G T G FP +YV+
Sbjct: 611 SDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYVK 644
Score = 57.0 bits (136), Expect = 3e-08
Identities = 31/73 (42%), Positives = 43/73 (58%)
Frame = +1
Query: 571 AVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQVSREPRL 750
A A Y+FK ELSF+KG+ + ++RK++++WYEG GR GIFP SYV+ P
Sbjct: 413 AKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEG--EHHGRVGIFPISYVEKLIPPE- 469
Query: 751 RLCEDGPQLPASP 789
+ P PA P
Sbjct: 470 KAQPARPPPPAQP 482
>ref|XP_848370.1| PREDICTED: similar to SH3 multiple domains 2 isoform 2 [Canis
familiaris].
Length = 882
Score = 82.8 bits (203), Expect = 5e-16
Identities = 60/215 (27%), Positives = 101/215 (46%), Gaps = 18/215 (8%)
Frame = +1
Query: 190 LYQGSSLSPHRMADGGSPFLGCRDF-------VYPSSTRDPSASERGA-------SPXXX 327
L G P + GG + C + V S++D +S+ G SP
Sbjct: 72 LLDGIKQRPWKPGPGGGSGMNCTNALRAQSSTVANCSSKDLQSSQGGQQPRVQAWSPPVR 131
Query: 328 XXXXXXXXXLKFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVL 507
++++ + P +L KGDI+ + ++VD+NW GE +G G FP N+V+++
Sbjct: 132 GIPQLPCAKALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVNGIHGFFPTNFVQII 191
Query: 508 PADEIPKPIKPPTYQVLEYGEAVAQYNFK-GDLEVE---LSFRKGERICLIRKVNEHWYE 675
P P PP + A Y+F+ D E + L F K + + +IR+V+E+W E
Sbjct: 192 K----PLPQPPP--------QCKALYDFEVKDKEADKDCLPFAKDDVLTVIRRVDENWAE 239
Query: 676 GRISGTGRQGIFPASYVQVSREPRLRLCEDGPQLP 780
G ++ + GIFP SYV+ + + + D P +P
Sbjct: 240 GMLA--DKIGIFPISYVEFNSAAKQLIEWDKPPVP 272
>ref|XP_855820.1| PREDICTED: similar to putative scaffolding protein POSH isoform 5
[Canis familiaris].
Length = 845
Score = 82.8 bits (203), Expect = 5e-16
Identities = 60/215 (27%), Positives = 101/215 (46%), Gaps = 18/215 (8%)
Frame = +1
Query: 190 LYQGSSLSPHRMADGGSPFLGCRDF-------VYPSSTRDPSASERGA-------SPXXX 327
L G P + GG + C + V S++D +S+ G SP
Sbjct: 72 LLDGIKQRPWKPGPGGGSGMNCTNALRAQSSTVANCSSKDLQSSQGGQQPRVQAWSPPVR 131
Query: 328 XXXXXXXXXLKFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVL 507
++++ + P +L KGDI+ + ++VD+NW GE +G G FP N+V+++
Sbjct: 132 GIPQLPCAKALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVNGIHGFFPTNFVQII 191
Query: 508 PADEIPKPIKPPTYQVLEYGEAVAQYNFK-GDLEVE---LSFRKGERICLIRKVNEHWYE 675
P P PP + A Y+F+ D E + L F K + + +IR+V+E+W E
Sbjct: 192 K----PLPQPPP--------QCKALYDFEVKDKEADKDCLPFAKDDVLTVIRRVDENWAE 239
Query: 676 GRISGTGRQGIFPASYVQVSREPRLRLCEDGPQLP 780
G ++ + GIFP SYV+ + + + D P +P
Sbjct: 240 GMLA--DKIGIFPISYVEFNSAAKQLIEWDKPPVP 272
>ref|XP_855903.1| PREDICTED: similar to SH3 multiple domains 2 isoform 7 [Canis
familiaris].
Length = 874
Score = 81.3 bits (199), Expect = 1e-15
Identities = 47/144 (32%), Positives = 81/144 (56%), Gaps = 4/144 (2%)
Frame = +1
Query: 361 FDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKP 540
++++ + P +L KGDI+ + ++VD+NW GE +G G FP N+V+++ P P P
Sbjct: 135 YNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVNGIHGFFPTNFVQIIK----PLPQPP 190
Query: 541 PTYQVLEYGEAVAQYNFK-GDLEVE---LSFRKGERICLIRKVNEHWYEGRISGTGRQGI 708
P + A Y+F+ D E + L F K + + +IR+V+E+W EG ++ + GI
Sbjct: 191 P--------QCKALYDFEVKDKEADKDCLPFAKDDVLTVIRRVDENWAEGMLA--DKIGI 240
Query: 709 FPASYVQVSREPRLRLCEDGPQLP 780
FP SYV+ + + + D P +P
Sbjct: 241 FPISYVEFNSAAKQLIEWDKPPVP 264
Score = 49.3 bits (116), Expect = 6e-06
Identities = 23/54 (42%), Positives = 35/54 (64%)
Frame = +1
Query: 571 AVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQV 732
A A YN++G +L F KG+ I L R+V+E+WY G ++G G FP ++VQ+
Sbjct: 131 AKALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVNGI--HGFFPTNFVQI 182
>ref|XP_855863.1| PREDICTED: similar to SH3 multiple domains 2 isoform 6 [Canis
familiaris].
Length = 874
Score = 81.3 bits (199), Expect = 1e-15
Identities = 47/144 (32%), Positives = 81/144 (56%), Gaps = 4/144 (2%)
Frame = +1
Query: 361 FDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKP 540
++++ + P +L KGDI+ + ++VD+NW GE +G G FP N+V+++ P P P
Sbjct: 135 YNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVNGIHGFFPTNFVQIIK----PLPQPP 190
Query: 541 PTYQVLEYGEAVAQYNFK-GDLEVE---LSFRKGERICLIRKVNEHWYEGRISGTGRQGI 708
P + A Y+F+ D E + L F K + + +IR+V+E+W EG ++ + GI
Sbjct: 191 P--------QCKALYDFEVKDKEADKDCLPFAKDDVLTVIRRVDENWAEGMLA--DKIGI 240
Query: 709 FPASYVQVSREPRLRLCEDGPQLP 780
FP SYV+ + + + D P +P
Sbjct: 241 FPISYVEFNSAAKQLIEWDKPPVP 264
Score = 49.3 bits (116), Expect = 6e-06
Identities = 23/54 (42%), Positives = 35/54 (64%)
Frame = +1
Query: 571 AVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQV 732
A A YN++G +L F KG+ I L R+V+E+WY G ++G G FP ++VQ+
Sbjct: 131 AKALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVNGI--HGFFPTNFVQI 182
>ref|XP_858579.1| PREDICTED: similar to SH3 domain containing ring finger 2 isoform 3
[Canis familiaris].
Length = 733
Score = 76.3 bits (186), Expect = 5e-14
Identities = 44/128 (34%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Frame = +1
Query: 364 DFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKPP 543
+++ Q+P +L KGD++ + +++D+NW +GE +G GIFPA+ VEV+ ++P+P PP
Sbjct: 135 NYRGQNPGDLRFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVI--KQLPQP--PP 190
Query: 544 TYQVLEYGEAVAQYNF------KGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQG 705
+ L YNF K + + L+F K + I +I +V+E+W EG++ + G
Sbjct: 191 LCRAL--------YNFDLRDKDKSENQDCLTFLKDDIITVISRVDENWAEGKLG--DQVG 240
Query: 706 IFPASYVQ 729
IFP +V+
Sbjct: 241 IFPILFVE 248
Score = 49.3 bits (116), Expect = 6e-06
Identities = 25/57 (43%), Positives = 38/57 (66%)
Frame = +1
Query: 571 AVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQVSRE 741
A A N++G +L F KG+ I L R+++E+WY+G I+G GIFPAS V+V ++
Sbjct: 130 AKALCNYRGQNPGDLRFNKGDVILLRRQLDENWYQGEINGV--SGIFPASSVEVIKQ 184
>ref|XP_535227.2| PREDICTED: similar to SH3 domain containing ring finger 2 isoform 1
[Canis familiaris].
Length = 733
Score = 76.3 bits (186), Expect = 5e-14
Identities = 44/128 (34%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Frame = +1
Query: 364 DFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKPP 543
+++ Q+P +L KGD++ + +++D+NW +GE +G GIFPA+ VEV+ ++P+P PP
Sbjct: 135 NYRGQNPGDLRFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVI--KQLPQP--PP 190
Query: 544 TYQVLEYGEAVAQYNF------KGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQG 705
+ L YNF K + + L+F K + I +I +V+E+W EG++ + G
Sbjct: 191 LCRAL--------YNFDLRDKDKSENQDCLTFLKDDIITVISRVDENWAEGKLG--DQVG 240
Query: 706 IFPASYVQ 729
IFP +V+
Sbjct: 241 IFPILFVE 248
Score = 49.3 bits (116), Expect = 6e-06
Identities = 25/57 (43%), Positives = 38/57 (66%)
Frame = +1
Query: 571 AVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQVSRE 741
A A N++G +L F KG+ I L R+++E+WY+G I+G GIFPAS V+V ++
Sbjct: 130 AKALCNYRGQNPGDLRFNKGDVILLRRQLDENWYQGEINGV--SGIFPASSVEVIKQ 184
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.315 0.134 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,280,358
Number of extensions: 1193376
Number of successful extensions: 6575
Number of sequences better than 1.0e-05: 70
Number of HSP's gapped: 6345
Number of HSP's successfully gapped: 134
Length of query: 355
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 251
Effective length of database: 15,407,560
Effective search space: 3867297560
Effective search space used: 3867297560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003305
(1067 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005766.3| vinexin isoform 1 [Homo sapiens]. 439 e-123
Alignment gi|NP_001018003.1| vinexin isoform 2 [Homo sapiens]. 417 e-116
Alignment gi|NP_001030129.1| sorbin and SH3 domain-containing protein 1 i... 186 4e-47
Alignment gi|NP_079267.1| sorbin and SH3 domain-containing protein 1 isof... 186 4e-47
Alignment gi|NP_001030128.1| sorbin and SH3 domain-containing protein 1 i... 186 4e-47
Alignment gi|NP_001030127.1| sorbin and SH3 domain-containing protein 1 i... 186 4e-47
Alignment gi|NP_001030126.1| sorbin and SH3 domain-containing protein 1 i... 186 4e-47
Alignment gi|NP_056200.1| sorbin and SH3 domain-containing protein 1 isof... 186 4e-47
Alignment gi|NP_006425.2| sorbin and SH3 domain-containing protein 1 isof... 186 4e-47
Alignment gi|NP_066547.1| sorbin and SH3 domain-containing protein 2 isof... 159 4e-39
>ref|NP_005766.3| vinexin isoform 1 [Homo sapiens].
Length = 671
Score = 439 bits (1129), Expect = e-123
Identities = 223/285 (78%), Positives = 232/285 (81%), Gaps = 3/285 (1%)
Frame = +1
Query: 166 WSASSPNALYQGS--SLSPHRMADGGSPFLGCRDFVYPSSTRDPSASERGASPXXXXXXX 339
WS+S P+A Y GS SLSPH+MADGGSPFLG RDFVYPSSTRDPSAS G SP
Sbjct: 322 WSSSYPHAPYLGSARSLSPHKMADGGSPFLGRRDFVYPSSTRDPSASNGGGSPARREEKK 381
Query: 340 XXXXXLKFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADE 519
LKFDFQAQSPKELTL+KGDIVYIHKEVDKNWLEGEHHG LGIFPANYVEVLPADE
Sbjct: 382 RKAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPADE 441
Query: 520 IPKPIKPPTYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGR 699
IPKPIKPPTYQVLEYGEAVAQY FKGDLEVELSFRKGE ICLIRKVNE+WYEGRI+GTGR
Sbjct: 442 IPKPIKPPTYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGR 501
Query: 700 QGIFPASYVQVSREPRLRLCEDGPQLPASPRLN-ATRLAXXXXXXXXXXXXADPTDWGGR 876
QGIFPASYVQVSREPRLRLC+DGPQLP SPRL A R A ADP D GG+
Sbjct: 502 QGIFPASYVQVSREPRLRLCDDGPQLPTSPRLTAAARSARHPSSPSALRSPADPIDLGGQ 561
Query: 877 TSPRRTGFSFPAQEPRPQTQSLSTPGSALSHPGVSSRPLDPGNSS 1011
TSPRRTGFSFP QEPRPQTQ+L TPG ALSH S PLD G SS
Sbjct: 562 TSPRRTGFSFPTQEPRPQTQNLGTPGPALSHSRGPSHPLDLGTSS 606
>ref|NP_001018003.1| vinexin isoform 2 [Homo sapiens].
Length = 329
Score = 417 bits (1071), Expect = e-116
Identities = 210/264 (79%), Positives = 216/264 (81%), Gaps = 1/264 (0%)
Frame = +1
Query: 223 MADGGSPFLGCRDFVYPSSTRDPSASERGASPXXXXXXXXXXXXLKFDFQAQSPKELTLK 402
MADGGSPFLG RDFVYPSSTRDPSAS G SP LKFDFQAQSPKELTL+
Sbjct: 1 MADGGSPFLGRRDFVYPSSTRDPSASNGGGSPARREEKKRKAARLKFDFQAQSPKELTLQ 60
Query: 403 KGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKPPTYQVLEYGEAVAQ 582
KGDIVYIHKEVDKNWLEGEHHG LGIFPANYVEVLPADEIPKPIKPPTYQVLEYGEAVAQ
Sbjct: 61 KGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPADEIPKPIKPPTYQVLEYGEAVAQ 120
Query: 583 YNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQVSREPRLRLCE 762
Y FKGDLEVELSFRKGE ICLIRKVNE+WYEGRI+GTGRQGIFPASYVQVSREPRLRLC+
Sbjct: 121 YTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREPRLRLCD 180
Query: 763 DGPQLPASPRLN-ATRLAXXXXXXXXXXXXADPTDWGGRTSPRRTGFSFPAQEPRPQTQS 939
DGPQLP SPRL A R A ADP D GG+TSPRRTGFSFP QEPRPQTQ+
Sbjct: 181 DGPQLPTSPRLTAAARSARHPSSPSALRSPADPIDLGGQTSPRRTGFSFPTQEPRPQTQN 240
Query: 940 LSTPGSALSHPGVSSRPLDPGNSS 1011
L TPG ALSH S PLD G SS
Sbjct: 241 LGTPGPALSHSRGPSHPLDLGTSS 264
>ref|NP_001030129.1| sorbin and SH3 domain-containing protein 1 isoform 7 [Homo
sapiens].
Length = 740
Score = 186 bits (471), Expect = 4e-47
Identities = 90/151 (59%), Positives = 116/151 (76%), Gaps = 2/151 (1%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIK 537
KFDF+AQ+ KEL L+KGDIVYI+K++D+NW EGEHHG +GIFP Y+E+LP E +P K
Sbjct: 507 KFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLPPAEKAQPKK 566
Query: 538 PPTYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
QVLEYGEA+A++NF GD +VE+SFRKGERI L+R+V+E+WYEGRI GT RQGIFP
Sbjct: 567 LTPVQVLEYGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPI 626
Query: 718 SYVQVSREPRLRLCEDGPQLP--ASPRLNAT 804
+YV V + P ++ D LP +SP +AT
Sbjct: 627 TYVDVIKRPLVKNPVDYMDLPFSSSPSRSAT 657
Score = 57.4 bits (137), Expect = 2e-08
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 34/158 (21%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGL--GIFPANYVEVLPADEIPKP 531
KF+F + E++ +KG+ + + ++VD+NW EG G GIFP YV+V+ + P
Sbjct: 581 KFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKRPLVKNP 640
Query: 532 I--------------------------------KPPTYQVLEYGEAVAQYNFKGDLEVEL 615
+ + T Q L +A+ Y + D E+EL
Sbjct: 641 VDYMDLPFSSSPSRSATASPQQPQAQQRRVTPDRSQTSQDLFSYQALYSYIPQNDDELEL 700
Query: 616 SFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQ 729
R G+ + ++ K ++ W+ G T + G FP +YV+
Sbjct: 701 --RDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 736
>ref|NP_079267.1| sorbin and SH3 domain-containing protein 1 isoform 6 [Homo sapiens].
Length = 781
Score = 186 bits (471), Expect = 4e-47
Identities = 90/151 (59%), Positives = 116/151 (76%), Gaps = 2/151 (1%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIK 537
KFDF+AQ+ KEL L+KGDIVYI+K++D+NW EGEHHG +GIFP Y+E+LP E +P K
Sbjct: 548 KFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLPPAEKAQPKK 607
Query: 538 PPTYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
QVLEYGEA+A++NF GD +VE+SFRKGERI L+R+V+E+WYEGRI GT RQGIFP
Sbjct: 608 LTPVQVLEYGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPI 667
Query: 718 SYVQVSREPRLRLCEDGPQLP--ASPRLNAT 804
+YV V + P ++ D LP +SP +AT
Sbjct: 668 TYVDVIKRPLVKNPVDYMDLPFSSSPSRSAT 698
Score = 57.4 bits (137), Expect = 2e-08
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 34/158 (21%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGL--GIFPANYVEVLPADEIPKP 531
KF+F + E++ +KG+ + + ++VD+NW EG G GIFP YV+V+ + P
Sbjct: 622 KFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKRPLVKNP 681
Query: 532 I--------------------------------KPPTYQVLEYGEAVAQYNFKGDLEVEL 615
+ + T Q L +A+ Y + D E+EL
Sbjct: 682 VDYMDLPFSSSPSRSATASPQQPQAQQRRVTPDRSQTSQDLFSYQALYSYIPQNDDELEL 741
Query: 616 SFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQ 729
R G+ + ++ K ++ W+ G T + G FP +YV+
Sbjct: 742 --RDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 777
>ref|NP_001030128.1| sorbin and SH3 domain-containing protein 1 isoform 5 [Homo sapiens].
Length = 905
Score = 186 bits (471), Expect = 4e-47
Identities = 90/151 (59%), Positives = 116/151 (76%), Gaps = 2/151 (1%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIK 537
KFDF+AQ+ KEL L+KGDIVYI+K++D+NW EGEHHG +GIFP Y+E+LP E +P K
Sbjct: 652 KFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLPPAEKAQPKK 711
Query: 538 PPTYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
QVLEYGEA+A++NF GD +VE+SFRKGERI L+R+V+E+WYEGRI GT RQGIFP
Sbjct: 712 LTPVQVLEYGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPI 771
Query: 718 SYVQVSREPRLRLCEDGPQLP--ASPRLNAT 804
+YV V + P ++ D LP +SP +AT
Sbjct: 772 TYVDVIKRPLVKNPVDYMDLPFSSSPSRSAT 802
>ref|NP_001030127.1| sorbin and SH3 domain-containing protein 1 isoform 4 [Homo sapiens].
Length = 1151
Score = 186 bits (471), Expect = 4e-47
Identities = 90/151 (59%), Positives = 116/151 (76%), Gaps = 2/151 (1%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIK 537
KFDF+AQ+ KEL L+KGDIVYI+K++D+NW EGEHHG +GIFP Y+E+LP E +P K
Sbjct: 823 KFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLPPAEKAQPKK 882
Query: 538 PPTYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
QVLEYGEA+A++NF GD +VE+SFRKGERI L+R+V+E+WYEGRI GT RQGIFP
Sbjct: 883 LTPVQVLEYGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPI 942
Query: 718 SYVQVSREPRLRLCEDGPQLP--ASPRLNAT 804
+YV V + P ++ D LP +SP +AT
Sbjct: 943 TYVDVIKRPLVKNPVDYMDLPFSSSPSRSAT 973
>ref|NP_001030126.1| sorbin and SH3 domain-containing protein 1 isoform 3 [Homo sapiens].
Length = 1292
Score = 186 bits (471), Expect = 4e-47
Identities = 90/151 (59%), Positives = 116/151 (76%), Gaps = 2/151 (1%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIK 537
KFDF+AQ+ KEL L+KGDIVYI+K++D+NW EGEHHG +GIFP Y+E+LP E +P K
Sbjct: 801 KFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLPPAEKAQPKK 860
Query: 538 PPTYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
QVLEYGEA+A++NF GD +VE+SFRKGERI L+R+V+E+WYEGRI GT RQGIFP
Sbjct: 861 LTPVQVLEYGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPI 920
Query: 718 SYVQVSREPRLRLCEDGPQLP--ASPRLNAT 804
+YV V + P ++ D LP +SP +AT
Sbjct: 921 TYVDVIKRPLVKNPVDYMDLPFSSSPSRSAT 951
>ref|NP_056200.1| sorbin and SH3 domain-containing protein 1 isoform 2 [Homo sapiens].
Length = 816
Score = 186 bits (471), Expect = 4e-47
Identities = 90/151 (59%), Positives = 116/151 (76%), Gaps = 2/151 (1%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIK 537
KFDF+AQ+ KEL L+KGDIVYI+K++D+NW EGEHHG +GIFP Y+E+LP E +P K
Sbjct: 583 KFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLPPAEKAQPKK 642
Query: 538 PPTYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
QVLEYGEA+A++NF GD +VE+SFRKGERI L+R+V+E+WYEGRI GT RQGIFP
Sbjct: 643 LTPVQVLEYGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPI 702
Query: 718 SYVQVSREPRLRLCEDGPQLP--ASPRLNAT 804
+YV V + P ++ D LP +SP +AT
Sbjct: 703 TYVDVIKRPLVKNPVDYMDLPFSSSPSRSAT 733
Score = 57.4 bits (137), Expect = 2e-08
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 34/158 (21%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGL--GIFPANYVEVLPADEIPKP 531
KF+F + E++ +KG+ + + ++VD+NW EG G GIFP YV+V+ + P
Sbjct: 657 KFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKRPLVKNP 716
Query: 532 I--------------------------------KPPTYQVLEYGEAVAQYNFKGDLEVEL 615
+ + T Q L +A+ Y + D E+EL
Sbjct: 717 VDYMDLPFSSSPSRSATASPQQPQAQQRRVTPDRSQTSQDLFSYQALYSYIPQNDDELEL 776
Query: 616 SFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQ 729
R G+ + ++ K ++ W+ G T + G FP +YV+
Sbjct: 777 --RDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 812
>ref|NP_006425.2| sorbin and SH3 domain-containing protein 1 isoform 1 [Homo
sapiens].
Length = 684
Score = 186 bits (471), Expect = 4e-47
Identities = 90/151 (59%), Positives = 116/151 (76%), Gaps = 2/151 (1%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIK 537
KFDF+AQ+ KEL L+KGDIVYI+K++D+NW EGEHHG +GIFP Y+E+LP E +P K
Sbjct: 451 KFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLPPAEKAQPKK 510
Query: 538 PPTYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
QVLEYGEA+A++NF GD +VE+SFRKGERI L+R+V+E+WYEGRI GT RQGIFP
Sbjct: 511 LTPVQVLEYGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPI 570
Query: 718 SYVQVSREPRLRLCEDGPQLP--ASPRLNAT 804
+YV V + P ++ D LP +SP +AT
Sbjct: 571 TYVDVIKRPLVKNPVDYMDLPFSSSPSRSAT 601
Score = 57.4 bits (137), Expect = 2e-08
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 34/158 (21%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGL--GIFPANYVEVLPADEIPKP 531
KF+F + E++ +KG+ + + ++VD+NW EG G GIFP YV+V+ + P
Sbjct: 525 KFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKRPLVKNP 584
Query: 532 I--------------------------------KPPTYQVLEYGEAVAQYNFKGDLEVEL 615
+ + T Q L +A+ Y + D E+EL
Sbjct: 585 VDYMDLPFSSSPSRSATASPQQPQAQQRRVTPDRSQTSQDLFSYQALYSYIPQNDDELEL 644
Query: 616 SFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQ 729
R G+ + ++ K ++ W+ G T + G FP +YV+
Sbjct: 645 --RDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 680
>ref|NP_066547.1| sorbin and SH3 domain-containing protein 2 isoform 2 [Homo sapiens].
Length = 1100
Score = 159 bits (402), Expect = 4e-39
Identities = 77/151 (50%), Positives = 107/151 (70%), Gaps = 1/151 (0%)
Frame = +1
Query: 361 FDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKP 540
+DF+AQ+ KEL+ KKGD VYI +++D+NW EGEHHG +GIFP +YVE L E +P +P
Sbjct: 872 YDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARP 931
Query: 541 PT-YQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
P Q E GEA+A+YNF D VELS RKG+R+ L+++V+++WYEG+I GT RQGIFP
Sbjct: 932 PPPAQPGEIGEAIAKYNFNADTNVELSLRKGDRVILLKRVDQNWYEGKIPGTNRQGIFPV 991
Query: 718 SYVQVSREPRLRLCEDGPQLPASPRLNATRL 810
SYV+V ++ + ED P P ++ R+
Sbjct: 992 SYVEVVKK-NTKGAEDYPDPPIPHSYSSDRI 1021
Score = 68.9 bits (167), Expect = 7e-12
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 29/183 (15%)
Frame = +1
Query: 268 YPSSTRDPSASERGASPXXXXXXXXXXXXLKFDFQAQSPKELTLKKGDIVYIHKEVDKNW 447
Y P ++ P K++F A + EL+L+KGD V + K VD+NW
Sbjct: 916 YVEKLTPPEKAQPARPPPPAQPGEIGEAIAKYNFNADTNVELSLRKGDRVILLKRVDQNW 975
Query: 448 LEGEHHGG--LGIFPANYVEVLP-----ADEIPKPIKPPTYQ------------------ 552
EG+ G GIFP +YVEV+ A++ P P P +Y
Sbjct: 976 YEGKIPGTNRQGIFPVSYVEVVKKNTKGAEDYPDPPIPHSYSSDRIHSLSSNKPQRPVFT 1035
Query: 553 ---VLEYGEAV-AQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPAS 720
+ GE A YN+ E EL R+ + I ++ K ++ W+ G T G FP +
Sbjct: 1036 HENIQGGGEPFQALYNYTPRNEDELELRESDVIDVMEKCDDGWFVGTSRRTKFFGTFPGN 1095
Query: 721 YVQ 729
YV+
Sbjct: 1096 YVK 1098
Score = 57.8 bits (138), Expect = 2e-08
Identities = 31/73 (42%), Positives = 43/73 (58%)
Frame = +1
Query: 571 AVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQVSREPRL 750
A A Y+FK ELSF+KG+ + ++RK++++WYEG GR GIFP SYV+ P
Sbjct: 868 AKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEG--EHHGRVGIFPISYVEKLTPPE- 924
Query: 751 RLCEDGPQLPASP 789
+ P PA P
Sbjct: 925 KAQPARPPPPAQP 937
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.315 0.134 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,260,730
Number of extensions: 1148177
Number of successful extensions: 5978
Number of sequences better than 1.0e-05: 72
Number of HSP's gapped: 5779
Number of HSP's successfully gapped: 128
Length of query: 355
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 251
Effective length of database: 14,868,908
Effective search space: 3732095908
Effective search space used: 3732095908
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003305
(1067 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035496.1| vinexin [Mus musculus]. 428 e-120
Alignment gi|NP_001030136.1| sorbin and SH3 domain-containing protein 1 i... 184 8e-47
Alignment gi|NP_001030134.1| sorbin and SH3 domain-containing protein 1 i... 184 8e-47
Alignment gi|NP_001030135.1| sorbin and SH3 domain-containing protein 1 i... 184 8e-47
Alignment gi|NP_848139.1| sorbin and SH3 domain-containing protein 1 isof... 184 8e-47
Alignment gi|NP_033192.2| sorbin and SH3 domain-containing protein 1 isof... 184 8e-47
Alignment gi|NP_766340.4| sorbin and SH3 domain-containing protein 2 isof... 159 3e-39
Alignment gi|NP_001192148.1| sorbin and SH3 domain-containing protein 2 i... 159 3e-39
Alignment gi|NP_067481.2| putative E3 ubiquitin-protein ligase SH3RF1 [Mu... 81 1e-15
Alignment gi|NP_001075883.2| SH3 domain-containing protein 19 [Mus muscul... 80 3e-15
>ref|NP_035496.1| vinexin [Mus musculus].
Length = 733
Score = 428 bits (1100), Expect = e-120
Identities = 217/287 (75%), Positives = 233/287 (81%), Gaps = 5/287 (1%)
Frame = +1
Query: 166 WSASSPNALYQGSS--LSPHRMADGG-SPFLGCRDFVYPSSTRDPSASERGASPXXXXXX 336
W +SP+A Y SS LSPHRMADGG SPFLG RDFVYPSS R+PSASERG+SP
Sbjct: 385 WRPNSPHAPYFSSSRPLSPHRMADGGGSPFLGRRDFVYPSSAREPSASERGSSPSRKEEK 444
Query: 337 XXXXXXLKFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPAD 516
LKFDFQAQSPKEL+L+KGDIVYIHKEVDKNWLEGEHHG LGIFPANYVEVLPAD
Sbjct: 445 KRKAARLKFDFQAQSPKELSLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPAD 504
Query: 517 EIPKPIKPPTYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTG 696
EIPKPIKPPTYQVLEYG+AVAQY FKGDLEVELSFRKGERICLIRKVNEHWYEGRI+GTG
Sbjct: 505 EIPKPIKPPTYQVLEYGDAVAQYTFKGDLEVELSFRKGERICLIRKVNEHWYEGRITGTG 564
Query: 697 RQGIFPASYVQVSREPRLRLCEDGPQLPASPRLNATRLAXXXXXXXXXXXXADPTDWGGR 876
RQGIFPASYVQ++REPRLRLC+DGPQLPASP N T A DPTDWGGR
Sbjct: 565 RQGIFPASYVQINREPRLRLCDDGPQLPASP--NPTTTAHLSSHSHPSSIPVDPTDWGGR 622
Query: 877 TSPRRTGFSFP--AQEPRPQTQSLSTPGSALSHPGVSSRPLDPGNSS 1011
TSPRR+ F FP QEPR QTQSL+TPG LSHP +SRP++ G SS
Sbjct: 623 TSPRRSAFPFPITLQEPRSQTQSLNTPGPTLSHPRATSRPINLGPSS 669
>ref|NP_001030136.1| sorbin and SH3 domain-containing protein 1 isoform 5 [Mus
musculus].
Length = 740
Score = 184 bits (468), Expect = 8e-47
Identities = 88/151 (58%), Positives = 116/151 (76%), Gaps = 2/151 (1%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIK 537
KFDF+AQ+ KEL L+KGD+VYI++++D+NW EGEHHG +GIFP Y+E+LP E +P K
Sbjct: 507 KFDFKAQTLKELPLQKGDVVYIYRQIDQNWYEGEHHGRVGIFPRTYIELLPPAEKAQPRK 566
Query: 538 PPTYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
QVLEYGEA+A++NF GD +VE+SFRKGERI L+R+V+E+WYEGRI GT RQGIFP
Sbjct: 567 LAPVQVLEYGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPI 626
Query: 718 SYVQVSREPRLRLCEDGPQLP--ASPRLNAT 804
+YV V + P ++ D LP +SP +AT
Sbjct: 627 TYVDVLKRPLVKTPVDYIDLPYSSSPSRSAT 657
Score = 59.7 bits (143), Expect = 4e-09
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 32/156 (20%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGL--GIFPANYVEVL-------P 510
KF+F + E++ +KG+ + + ++VD+NW EG G GIFP YV+VL P
Sbjct: 581 KFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVLKRPLVKTP 640
Query: 511 ADEIPKP----------IKPPTYQV-------------LEYGEAVAQYNFKGDLEVELSF 621
D I P + P Q L+ A Y++ + EL
Sbjct: 641 VDYIDLPYSSSPSRSATVSPQQPQAQQRRVTPDRSQPSLDLCSYQALYSYVPQNDDELEL 700
Query: 622 RKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQ 729
R G+ + ++ K ++ W+ G T + G FP +YV+
Sbjct: 701 RDGDIVDVMEKCDDGWFVGTSRRTRQFGTFPGNYVK 736
>ref|NP_001030134.1| sorbin and SH3 domain-containing protein 1 isoform 3 [Mus
musculus].
Length = 714
Score = 184 bits (468), Expect = 8e-47
Identities = 88/151 (58%), Positives = 116/151 (76%), Gaps = 2/151 (1%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIK 537
KFDF+AQ+ KEL L+KGD+VYI++++D+NW EGEHHG +GIFP Y+E+LP E +P K
Sbjct: 481 KFDFKAQTLKELPLQKGDVVYIYRQIDQNWYEGEHHGRVGIFPRTYIELLPPAEKAQPRK 540
Query: 538 PPTYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
QVLEYGEA+A++NF GD +VE+SFRKGERI L+R+V+E+WYEGRI GT RQGIFP
Sbjct: 541 LAPVQVLEYGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPI 600
Query: 718 SYVQVSREPRLRLCEDGPQLP--ASPRLNAT 804
+YV V + P ++ D LP +SP +AT
Sbjct: 601 TYVDVLKRPLVKTPVDYIDLPYSSSPSRSAT 631
Score = 59.7 bits (143), Expect = 4e-09
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 32/156 (20%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGL--GIFPANYVEVL-------P 510
KF+F + E++ +KG+ + + ++VD+NW EG G GIFP YV+VL P
Sbjct: 555 KFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVLKRPLVKTP 614
Query: 511 ADEIPKP----------IKPPTYQV-------------LEYGEAVAQYNFKGDLEVELSF 621
D I P + P Q L+ A Y++ + EL
Sbjct: 615 VDYIDLPYSSSPSRSATVSPQQPQAQQRRVTPDRSQPSLDLCSYQALYSYVPQNDDELEL 674
Query: 622 RKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQ 729
R G+ + ++ K ++ W+ G T + G FP +YV+
Sbjct: 675 RDGDIVDVMEKCDDGWFVGTSRRTRQFGTFPGNYVK 710
>ref|NP_001030135.1| sorbin and SH3 domain-containing protein 1 isoform 4 [Mus
musculus].
Length = 724
Score = 184 bits (468), Expect = 8e-47
Identities = 88/151 (58%), Positives = 116/151 (76%), Gaps = 2/151 (1%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIK 537
KFDF+AQ+ KEL L+KGD+VYI++++D+NW EGEHHG +GIFP Y+E+LP E +P K
Sbjct: 491 KFDFKAQTLKELPLQKGDVVYIYRQIDQNWYEGEHHGRVGIFPRTYIELLPPAEKAQPRK 550
Query: 538 PPTYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
QVLEYGEA+A++NF GD +VE+SFRKGERI L+R+V+E+WYEGRI GT RQGIFP
Sbjct: 551 LAPVQVLEYGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPI 610
Query: 718 SYVQVSREPRLRLCEDGPQLP--ASPRLNAT 804
+YV V + P ++ D LP +SP +AT
Sbjct: 611 TYVDVLKRPLVKTPVDYIDLPYSSSPSRSAT 641
Score = 59.7 bits (143), Expect = 4e-09
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 32/156 (20%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGL--GIFPANYVEVL-------P 510
KF+F + E++ +KG+ + + ++VD+NW EG G GIFP YV+VL P
Sbjct: 565 KFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVLKRPLVKTP 624
Query: 511 ADEIPKP----------IKPPTYQV-------------LEYGEAVAQYNFKGDLEVELSF 621
D I P + P Q L+ A Y++ + EL
Sbjct: 625 VDYIDLPYSSSPSRSATVSPQQPQAQQRRVTPDRSQPSLDLCSYQALYSYVPQNDDELEL 684
Query: 622 RKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQ 729
R G+ + ++ K ++ W+ G T + G FP +YV+
Sbjct: 685 RDGDIVDVMEKCDDGWFVGTSRRTRQFGTFPGNYVK 720
>ref|NP_848139.1| sorbin and SH3 domain-containing protein 1 isoform 2 [Mus musculus].
Length = 938
Score = 184 bits (468), Expect = 8e-47
Identities = 88/151 (58%), Positives = 116/151 (76%), Gaps = 2/151 (1%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIK 537
KFDF+AQ+ KEL L+KGD+VYI++++D+NW EGEHHG +GIFP Y+E+LP E +P K
Sbjct: 705 KFDFKAQTLKELPLQKGDVVYIYRQIDQNWYEGEHHGRVGIFPRTYIELLPPAEKAQPRK 764
Query: 538 PPTYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
QVLEYGEA+A++NF GD +VE+SFRKGERI L+R+V+E+WYEGRI GT RQGIFP
Sbjct: 765 LAPVQVLEYGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPI 824
Query: 718 SYVQVSREPRLRLCEDGPQLP--ASPRLNAT 804
+YV V + P ++ D LP +SP +AT
Sbjct: 825 TYVDVLKRPLVKTPVDYIDLPYSSSPSRSAT 855
Score = 59.7 bits (143), Expect = 4e-09
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 32/156 (20%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGL--GIFPANYVEVL-------P 510
KF+F + E++ +KG+ + + ++VD+NW EG G GIFP YV+VL P
Sbjct: 779 KFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVLKRPLVKTP 838
Query: 511 ADEIPKP----------IKPPTYQV-------------LEYGEAVAQYNFKGDLEVELSF 621
D I P + P Q L+ A Y++ + EL
Sbjct: 839 VDYIDLPYSSSPSRSATVSPQQPQAQQRRVTPDRSQPSLDLCSYQALYSYVPQNDDELEL 898
Query: 622 RKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQ 729
R G+ + ++ K ++ W+ G T + G FP +YV+
Sbjct: 899 RDGDIVDVMEKCDDGWFVGTSRRTRQFGTFPGNYVK 934
>ref|NP_033192.2| sorbin and SH3 domain-containing protein 1 isoform 1 [Mus
musculus].
Length = 684
Score = 184 bits (468), Expect = 8e-47
Identities = 88/151 (58%), Positives = 116/151 (76%), Gaps = 2/151 (1%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIK 537
KFDF+AQ+ KEL L+KGD+VYI++++D+NW EGEHHG +GIFP Y+E+LP E +P K
Sbjct: 451 KFDFKAQTLKELPLQKGDVVYIYRQIDQNWYEGEHHGRVGIFPRTYIELLPPAEKAQPRK 510
Query: 538 PPTYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
QVLEYGEA+A++NF GD +VE+SFRKGERI L+R+V+E+WYEGRI GT RQGIFP
Sbjct: 511 LAPVQVLEYGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPI 570
Query: 718 SYVQVSREPRLRLCEDGPQLP--ASPRLNAT 804
+YV V + P ++ D LP +SP +AT
Sbjct: 571 TYVDVLKRPLVKTPVDYIDLPYSSSPSRSAT 601
Score = 59.7 bits (143), Expect = 4e-09
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 32/156 (20%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGL--GIFPANYVEVL-------P 510
KF+F + E++ +KG+ + + ++VD+NW EG G GIFP YV+VL P
Sbjct: 525 KFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVLKRPLVKTP 584
Query: 511 ADEIPKP----------IKPPTYQV-------------LEYGEAVAQYNFKGDLEVELSF 621
D I P + P Q L+ A Y++ + EL
Sbjct: 585 VDYIDLPYSSSPSRSATVSPQQPQAQQRRVTPDRSQPSLDLCSYQALYSYVPQNDDELEL 644
Query: 622 RKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQ 729
R G+ + ++ K ++ W+ G T + G FP +YV+
Sbjct: 645 RDGDIVDVMEKCDDGWFVGTSRRTRQFGTFPGNYVK 680
>ref|NP_766340.4| sorbin and SH3 domain-containing protein 2 isoform 2 [Mus musculus].
Length = 1196
Score = 159 bits (403), Expect = 3e-39
Identities = 78/151 (51%), Positives = 106/151 (70%), Gaps = 1/151 (0%)
Frame = +1
Query: 361 FDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKP 540
+DF+AQ+ KEL+ KKGD VYI +++D+NW EGEHHG +GIFP +YVE L E +P +P
Sbjct: 968 YDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARP 1027
Query: 541 PT-YQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
P Q E GEA+A+YNF D VELS RKG+RI L+++V+++WYEG+I GT RQGIFP
Sbjct: 1028 PPPVQPGEIGEAIAKYNFNADTNVELSLRKGDRIILLKRVDQNWYEGKIPGTNRQGIFPV 1087
Query: 718 SYVQVSREPRLRLCEDGPQLPASPRLNATRL 810
SYV+V + + ED P P ++ R+
Sbjct: 1088 SYVEVVKR-NAKGAEDYPDPPLPHSYSSDRI 1117
Score = 68.6 bits (166), Expect = 8e-12
Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 29/183 (15%)
Frame = +1
Query: 268 YPSSTRDPSASERGASPXXXXXXXXXXXXLKFDFQAQSPKELTLKKGDIVYIHKEVDKNW 447
Y P ++ P K++F A + EL+L+KGD + + K VD+NW
Sbjct: 1012 YVEKLTPPEKAQPARPPPPVQPGEIGEAIAKYNFNADTNVELSLRKGDRIILLKRVDQNW 1071
Query: 448 LEGEHHGG--LGIFPANYVEVLP-----ADEIPKPIKPPTYQ------------------ 552
EG+ G GIFP +YVEV+ A++ P P P +Y
Sbjct: 1072 YEGKIPGTNRQGIFPVSYVEVVKRNAKGAEDYPDPPLPHSYSSDRIYTLSSNKPQRPGFS 1131
Query: 553 ---VLEYGEAV-AQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPAS 720
+ GE A YN+ E EL R+ + + ++ K ++ W+ G T G FP +
Sbjct: 1132 HENIQGGGEPFQALYNYTPRNEDELELRESDVVDVMEKCDDGWFVGTSRRTKFFGTFPGN 1191
Query: 721 YVQ 729
YV+
Sbjct: 1192 YVK 1194
Score = 57.0 bits (136), Expect = 2e-08
Identities = 27/58 (46%), Positives = 38/58 (65%)
Frame = +1
Query: 571 AVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQVSREP 744
A A Y+FK ELSF+KG+ + ++RK++++WYEG GR GIFP SYV+ P
Sbjct: 964 AKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEG--EHHGRVGIFPISYVEKLTPP 1019
>ref|NP_001192148.1| sorbin and SH3 domain-containing protein 2 isoform 1 [Mus musculus].
Length = 1214
Score = 159 bits (403), Expect = 3e-39
Identities = 78/151 (51%), Positives = 106/151 (70%), Gaps = 1/151 (0%)
Frame = +1
Query: 361 FDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKP 540
+DF+AQ+ KEL+ KKGD VYI +++D+NW EGEHHG +GIFP +YVE L E +P +P
Sbjct: 986 YDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARP 1045
Query: 541 PT-YQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
P Q E GEA+A+YNF D VELS RKG+RI L+++V+++WYEG+I GT RQGIFP
Sbjct: 1046 PPPVQPGEIGEAIAKYNFNADTNVELSLRKGDRIILLKRVDQNWYEGKIPGTNRQGIFPV 1105
Query: 718 SYVQVSREPRLRLCEDGPQLPASPRLNATRL 810
SYV+V + + ED P P ++ R+
Sbjct: 1106 SYVEVVKR-NAKGAEDYPDPPLPHSYSSDRI 1135
Score = 68.6 bits (166), Expect = 8e-12
Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 29/183 (15%)
Frame = +1
Query: 268 YPSSTRDPSASERGASPXXXXXXXXXXXXLKFDFQAQSPKELTLKKGDIVYIHKEVDKNW 447
Y P ++ P K++F A + EL+L+KGD + + K VD+NW
Sbjct: 1030 YVEKLTPPEKAQPARPPPPVQPGEIGEAIAKYNFNADTNVELSLRKGDRIILLKRVDQNW 1089
Query: 448 LEGEHHGG--LGIFPANYVEVLP-----ADEIPKPIKPPTYQ------------------ 552
EG+ G GIFP +YVEV+ A++ P P P +Y
Sbjct: 1090 YEGKIPGTNRQGIFPVSYVEVVKRNAKGAEDYPDPPLPHSYSSDRIYTLSSNKPQRPGFS 1149
Query: 553 ---VLEYGEAV-AQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPAS 720
+ GE A YN+ E EL R+ + + ++ K ++ W+ G T G FP +
Sbjct: 1150 HENIQGGGEPFQALYNYTPRNEDELELRESDVVDVMEKCDDGWFVGTSRRTKFFGTFPGN 1209
Query: 721 YVQ 729
YV+
Sbjct: 1210 YVK 1212
Score = 57.0 bits (136), Expect = 2e-08
Identities = 27/58 (46%), Positives = 38/58 (65%)
Frame = +1
Query: 571 AVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQVSREP 744
A A Y+FK ELSF+KG+ + ++RK++++WYEG GR GIFP SYV+ P
Sbjct: 982 AKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEG--EHHGRVGIFPISYVEKLTPP 1037
>ref|NP_067481.2| putative E3 ubiquitin-protein ligase SH3RF1 [Mus musculus].
Length = 891
Score = 81.3 bits (199), Expect = 1e-15
Identities = 55/198 (27%), Positives = 93/198 (46%), Gaps = 4/198 (2%)
Frame = +1
Query: 199 GSSLSPHRMADGGSPFLGCRDFVYPSSTRDPSASERGASPXXXXXXXXXXXXLKFDFQAQ 378
G + + + GS + C SS + SP ++++ +
Sbjct: 89 GGTTCTNTLRAQGSTVVNCGSKDLQSSQCGQQPRVQAWSPPVRGIPQLPCAKALYNYEGK 148
Query: 379 SPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKPPTYQVL 558
P +L KGDI+ + ++VD+NW GE G G FP N+V+++ P P PP
Sbjct: 149 EPGDLKFSKGDIIILRRQVDENWYHGEVSGVHGFFPTNFVQIIK----PLPQPPP----- 199
Query: 559 EYGEAVAQYNFK-GDLEVE---LSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYV 726
+ A Y+F+ D E + L F K + + +IR+V+E+W EG ++ + GIFP SYV
Sbjct: 200 ---QCKALYDFEVKDKEADKDCLPFAKDDVLTVIRRVDENWAEGMLA--DKIGIFPISYV 254
Query: 727 QVSREPRLRLCEDGPQLP 780
+ + + + D P +P
Sbjct: 255 EFNSAAKQLIEWDKPPVP 272
>ref|NP_001075883.2| SH3 domain-containing protein 19 [Mus musculus].
Length = 789
Score = 80.1 bits (196), Expect = 3e-15
Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Frame = +1
Query: 364 DFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKPP 543
DF A+ +L+L G+IVY+ +++D W G+ G+FPANYV+V+ + K
Sbjct: 504 DFPAEQADDLSLTSGEIVYLLEKIDAEWYRGKCRNQTGVFPANYVKVIVDIPEGRSGKRE 563
Query: 544 TY--QVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
++ + VA++ + GD + ELSF +GE I L VNE W G I R GIFP
Sbjct: 564 SFSSHCAKGPRCVARFEYIGDQKDELSFSEGEVIILTEYVNEEWGRGEI--RDRSGIFPL 621
Query: 718 SYVQV 732
++V++
Sbjct: 622 NFVEL 626
Score = 74.7 bits (182), Expect = 1e-13
Identities = 45/152 (29%), Positives = 76/152 (50%)
Frame = +1
Query: 274 SSTRDPSASERGASPXXXXXXXXXXXXLKFDFQAQSPKELTLKKGDIVYIHKEVDKNWLE 453
+ DP ++ + +SP F A++ ++L K+GD + I + +D +W
Sbjct: 646 TKNEDPGSNSQDSSPPGEWCKALH------SFTAETSEDLPFKRGDRILILERLDSDWYR 699
Query: 454 GEHHGGLGIFPANYVEVLPADEIPKPIKPPTYQVLEYGEAVAQYNFKGDLEVELSFRKGE 633
G H GIFPA +V+ PA+ K + + + A Y+F G+ E ELSF+ G+
Sbjct: 700 GRLHDREGIFPAVFVQPCPAE-----AKGVASAIPKGRKVKALYDFLGENEDELSFKAGD 754
Query: 634 RICLIRKVNEHWYEGRISGTGRQGIFPASYVQ 729
I + +++ W G + GR G+FP +YVQ
Sbjct: 755 VITELEPIDDAWMRGEL--MGRAGMFPKNYVQ 784
Score = 68.9 bits (167), Expect = 6e-12
Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 17/157 (10%)
Frame = +1
Query: 364 DFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLG-IFPANYVEVLPADEIPKPIKP 540
D +++P EL+ K+GD++ I K+ + N+LE + G G + P+ V P DE P+ +P
Sbjct: 424 DIVSRNPTELSCKRGDVLVILKQAENNYLECQRGEGTGRVHPSQMKIVTPLDERPRG-RP 482
Query: 541 ----PTYQVLEYG--EAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQ 702
+ + ++ G AVA ++F + +LS GE + L+ K++ WY G+ +
Sbjct: 483 NDSGHSQKPVDSGAPHAVALHDFPAEQADDLSLTSGEIVYLLEKIDAEWYRGKC--RNQT 540
Query: 703 GIFPASYVQV----------SREPRLRLCEDGPQLPA 783
G+FPA+YV+V RE C GP+ A
Sbjct: 541 GVFPANYVKVIVDIPEGRSGKRESFSSHCAKGPRCVA 577
Score = 65.9 bits (159), Expect = 5e-11
Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 16/140 (11%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVL-----PADEI 522
+F++ EL+ +G+++ + + V++ W GE GIFP N+VE++ I
Sbjct: 578 RFEYIGDQKDELSFSEGEVIILTEYVNEEWGRGEIRDRSGIFPLNFVELVGDHPTSGANI 637
Query: 523 PKPIKPPTYQVLEYGE-----------AVAQYNFKGDLEVELSFRKGERICLIRKVNEHW 669
PP + + G A ++F + +L F++G+RI ++ +++ W
Sbjct: 638 LSTKVPPKTKNEDPGSNSQDSSPPGEWCKALHSFTAETSEDLPFKRGDRILILERLDSDW 697
Query: 670 YEGRISGTGRQGIFPASYVQ 729
Y GR+ R+GIFPA +VQ
Sbjct: 698 YRGRLH--DREGIFPAVFVQ 715
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.315 0.134 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,779,270
Number of extensions: 934160
Number of successful extensions: 4676
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 4532
Number of HSP's successfully gapped: 72
Length of query: 355
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 253
Effective length of database: 12,553,887
Effective search space: 3176133411
Effective search space used: 3176133411
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003305
(1067 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359355.1| PREDICTED: sorbin and SH3 domain-containing ... 185 3e-47
Alignment gi|XP_003133397.2| PREDICTED: sorbin and SH3 domain-containing ... 162 2e-40
Alignment gi|XP_003359519.1| PREDICTED: sorbin and SH3 domain-containing ... 162 2e-40
Alignment gi|XP_003129194.2| PREDICTED: SH3 domain-containing protein 19 ... 79 3e-15
Alignment gi|XP_003358994.1| PREDICTED: intersectin-1-like [Sus scrofa]. 71 1e-12
Alignment gi|XP_003125408.2| PREDICTED: LOW QUALITY PROTEIN: intersectin-... 68 1e-11
Alignment gi|XP_003135018.2| PREDICTED: SH3 domain-containing kinase-bind... 62 7e-10
Alignment gi|XP_003360289.1| PREDICTED: SH3 domain-containing kinase-bind... 61 9e-10
Alignment gi|NP_001131103.1| cytoplasmic protein NCK2 [Sus scrofa]. 59 6e-09
Alignment gi|XP_001925192.2| PREDICTED: endophilin-A1-like [Sus scrofa]. 58 8e-09
>ref|XP_003359355.1| PREDICTED: sorbin and SH3 domain-containing protein 1-like [Sus
scrofa].
Length = 679
Score = 185 bits (470), Expect = 3e-47
Identities = 90/151 (59%), Positives = 116/151 (76%), Gaps = 2/151 (1%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIK 537
KFDF+AQ+ KEL L+KGDIVYI+K++D+NW EGEHHG +GIFP Y+E+LP E +P K
Sbjct: 192 KFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLPPAEKAQPKK 251
Query: 538 PPTYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
QVLEYGEA+A++NF GD +VE+SFRKGERI L+R+V+E+WYEGRI GT RQGIFP
Sbjct: 252 LTPVQVLEYGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPI 311
Query: 718 SYVQVSREPRLRLCEDGPQLP--ASPRLNAT 804
+YV V + P ++ D LP +SP +AT
Sbjct: 312 TYVDVIKRPLVKNPVDYIDLPFSSSPSRSAT 342
>ref|XP_003133397.2| PREDICTED: sorbin and SH3 domain-containing protein 2 isoform 1 [Sus
scrofa].
Length = 1221
Score = 162 bits (411), Expect = 2e-40
Identities = 77/151 (50%), Positives = 108/151 (71%), Gaps = 1/151 (0%)
Frame = +1
Query: 361 FDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKP 540
+DF+AQ+ KEL+ KKGD VYI +++D+NW EGEHHG +GIFP +YVE L E +P +P
Sbjct: 992 YDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARP 1051
Query: 541 PT-YQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
P Q+ E GEAVA+YNF D VELS RKG+R+ L+++V+++WYEG+I GT RQGIFP
Sbjct: 1052 PPPAQLGEIGEAVAKYNFSADTNVELSLRKGDRVILLKRVDQNWYEGKIPGTNRQGIFPV 1111
Query: 718 SYVQVSREPRLRLCEDGPQLPASPRLNATRL 810
SYV+V ++ + E+ P P ++ R+
Sbjct: 1112 SYVEVVKKNTTKGAEEYPDPPIPHSYSSDRI 1142
Score = 69.7 bits (169), Expect = 3e-12
Identities = 54/184 (29%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Frame = +1
Query: 268 YPSSTRDPSASERGASPXXXXXXXXXXXXLKFDFQAQSPKELTLKKGDIVYIHKEVDKNW 447
Y P ++ P K++F A + EL+L+KGD V + K VD+NW
Sbjct: 1036 YVEKLTPPEKAQPARPPPPAQLGEIGEAVAKYNFSADTNVELSLRKGDRVILLKRVDQNW 1095
Query: 448 LEGEHHGG--LGIFPANYVEVLP------ADEIPKPIKPPTYQ----------------- 552
EG+ G GIFP +YVEV+ A+E P P P +Y
Sbjct: 1096 YEGKIPGTNRQGIFPVSYVEVVKKNTTKGAEEYPDPPIPHSYSSDRIHSLSSNKPQRPVF 1155
Query: 553 ----VLEYGEAV-AQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
+ GE A YN+ E EL R+ + I ++ K ++ W+ G T G FP
Sbjct: 1156 THENIQGGGEPFQALYNYTPRNEDELELRESDVIDVMEKCDDGWFVGTSRRTKFFGTFPG 1215
Query: 718 SYVQ 729
+YV+
Sbjct: 1216 NYVK 1219
Score = 57.0 bits (136), Expect = 2e-08
Identities = 27/58 (46%), Positives = 38/58 (65%)
Frame = +1
Query: 571 AVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQVSREP 744
A A Y+FK ELSF+KG+ + ++RK++++WYEG GR GIFP SYV+ P
Sbjct: 988 AKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEG--EHHGRVGIFPISYVEKLTPP 1043
>ref|XP_003359519.1| PREDICTED: sorbin and SH3 domain-containing protein 2 isoform 2
[Sus scrofa].
Length = 493
Score = 162 bits (411), Expect = 2e-40
Identities = 77/151 (50%), Positives = 108/151 (71%), Gaps = 1/151 (0%)
Frame = +1
Query: 361 FDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKP 540
+DF+AQ+ KEL+ KKGD VYI +++D+NW EGEHHG +GIFP +YVE L E +P +P
Sbjct: 264 YDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARP 323
Query: 541 PT-YQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
P Q+ E GEAVA+YNF D VELS RKG+R+ L+++V+++WYEG+I GT RQGIFP
Sbjct: 324 PPPAQLGEIGEAVAKYNFSADTNVELSLRKGDRVILLKRVDQNWYEGKIPGTNRQGIFPV 383
Query: 718 SYVQVSREPRLRLCEDGPQLPASPRLNATRL 810
SYV+V ++ + E+ P P ++ R+
Sbjct: 384 SYVEVVKKNTTKGAEEYPDPPIPHSYSSDRI 414
Score = 69.7 bits (169), Expect = 3e-12
Identities = 54/184 (29%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Frame = +1
Query: 268 YPSSTRDPSASERGASPXXXXXXXXXXXXLKFDFQAQSPKELTLKKGDIVYIHKEVDKNW 447
Y P ++ P K++F A + EL+L+KGD V + K VD+NW
Sbjct: 308 YVEKLTPPEKAQPARPPPPAQLGEIGEAVAKYNFSADTNVELSLRKGDRVILLKRVDQNW 367
Query: 448 LEGEHHGG--LGIFPANYVEVLP------ADEIPKPIKPPTYQ----------------- 552
EG+ G GIFP +YVEV+ A+E P P P +Y
Sbjct: 368 YEGKIPGTNRQGIFPVSYVEVVKKNTTKGAEEYPDPPIPHSYSSDRIHSLSSNKPQRPVF 427
Query: 553 ----VLEYGEAV-AQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPA 717
+ GE A YN+ E EL R+ + I ++ K ++ W+ G T G FP
Sbjct: 428 THENIQGGGEPFQALYNYTPRNEDELELRESDVIDVMEKCDDGWFVGTSRRTKFFGTFPG 487
Query: 718 SYVQ 729
+YV+
Sbjct: 488 NYVK 491
Score = 57.0 bits (136), Expect = 2e-08
Identities = 27/58 (46%), Positives = 38/58 (65%)
Frame = +1
Query: 571 AVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQVSREP 744
A A Y+FK ELSF+KG+ + ++RK++++WYEG GR GIFP SYV+ P
Sbjct: 260 AKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEG--EHHGRVGIFPISYVEKLTPP 315
>ref|XP_003129194.2| PREDICTED: SH3 domain-containing protein 19 isoform 1 [Sus scrofa].
Length = 597
Score = 79.3 bits (194), Expect = 3e-15
Identities = 45/121 (37%), Positives = 68/121 (56%)
Frame = +1
Query: 367 FQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPIKPPT 546
F A++ +L+ K+GD + I + VD +W +G G GIFPA +V PA+ K
Sbjct: 479 FTAETSDDLSFKRGDRILILERVDSDWYKGSLRGREGIFPAVFVRPCPAE-----TKSMA 533
Query: 547 YQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYV 726
L+ +A A Y+F G+ E ELSF+ G+ I + V++ W G + G+ GIFP +YV
Sbjct: 534 ALALKGRKAKALYDFHGENEDELSFKAGDIITELESVDDDWMSGEL--MGKSGIFPKTYV 591
Query: 727 Q 729
Q
Sbjct: 592 Q 592
Score = 77.4 bits (189), Expect = 1e-14
Identities = 44/126 (34%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Frame = +1
Query: 364 DFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPI--- 534
DF A+ +L L G+IVY+ +++ +W G+ G+FPANYV+V+ ++P
Sbjct: 314 DFPAEQVDDLNLTSGEIVYLLEKIGTDWYRGKCRNQTGVFPANYVKVI--IDVPGGSGKG 371
Query: 535 KPPTYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFP 714
+ + ++ VA++ + GD + ELSF +GE I L VNE W G + R GIFP
Sbjct: 372 ESSSSHCIKGPRCVARFEYIGDQKDELSFSEGEIIILKEYVNEEWARGELG--DRSGIFP 429
Query: 715 ASYVQV 732
++V+V
Sbjct: 430 LNFVEV 435
Score = 72.8 bits (177), Expect = 3e-13
Identities = 41/139 (29%), Positives = 74/139 (53%), Gaps = 15/139 (10%)
Frame = +1
Query: 358 KFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLP--------- 510
+F++ EL+ +G+I+ + + V++ W GE GIFP N+VEV+
Sbjct: 387 RFEYIGDQKDELSFSEGEIIILKEYVNEEWARGELGDRSGIFPLNFVEVIEDRPTSGTNV 446
Query: 511 -ADEIPKPIKPP-----TYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWY 672
+ ++P IK + L A ++F + +LSF++G+RI ++ +V+ WY
Sbjct: 447 LSTKLPPKIKKEDSGANSQNSLSGEWCEALHSFTAETSDDLSFKRGDRILILERVDSDWY 506
Query: 673 EGRISGTGRQGIFPASYVQ 729
+G + GR+GIFPA +V+
Sbjct: 507 KGSL--RGREGIFPAVFVR 523
Score = 56.2 bits (134), Expect = 3e-08
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Frame = +1
Query: 364 DFQAQSPKELTLKKGDIVYIHKEVDKNWLE---GEHHGGLGIFPANYVEVLPADEIPKPI 534
D Q+P EL+ K+GD++ I K+ + N+ E GE G + + + L +P
Sbjct: 234 DIVPQNPGELSCKRGDVLVILKQAENNYWECQKGEDSGRVHLSQMKIITPLDEHLRSRPN 293
Query: 535 KPPTYQVLEYG---EAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQG 705
P Q AV ++F + +L+ GE + L+ K+ WY G+ + G
Sbjct: 294 DPSQAQKPVDSCAPHAVVLHDFPAEQVDDLNLTSGEIVYLLEKIGTDWYRGKC--RNQTG 351
Query: 706 IFPASYVQV 732
+FPA+YV+V
Sbjct: 352 VFPANYVKV 360
>ref|XP_003358994.1| PREDICTED: intersectin-1-like [Sus scrofa].
Length = 899
Score = 70.9 bits (172), Expect = 1e-12
Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 8/163 (4%)
Frame = +1
Query: 277 STRDPSASERGASPXXXXXXXXXXXXLKF-DFQAQSPKELTLKKGDIVYIHKEVDKNWLE 453
S+ P++ +R ASP + A P++LTL G ++ I K+ W E
Sbjct: 684 SSESPASLKRVASPAAKPAPSGEEIAQVIASYTATGPEQLTLAPGQLILIRKKNPGGWWE 743
Query: 454 GEHHGG-----LGIFPANYVEVL-PADEIPKPIKPPTYQVLE-YGEAVAQYNFKGDLEVE 612
GE +G FPANYV++L P P +PP + + Y++ + E
Sbjct: 744 GELQARGKKRQIGWFPANYVKLLSPGTSKITPTEPPKPTAFPAVCQVIGMYDYTAQNDDE 803
Query: 613 LSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQVSRE 741
L+F KG+ I ++ K + W++G + G+ G+FP++YV+++ +
Sbjct: 804 LAFNKGQVINVLNKEDPDWWKGEVH--GQVGLFPSNYVKLTTD 844
Score = 49.7 bits (117), Expect = 3e-06
Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 22/164 (13%)
Frame = +1
Query: 361 FDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVL----------- 507
+ ++A+ L K D++ + ++ D W GE G G FP +YV+++
Sbjct: 623 YPWRAKKDNHLNFNKNDVITVLEQQDMWWF-GEVQGQKGWFPKSYVKLISGPIRKSTSID 681
Query: 508 ------PAD--EIPKPIKPPTYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNE 663
PA + P P E + +A Y G +L+ G+ I + +K
Sbjct: 682 SGSSESPASLKRVASPAAKPAPSGEEIAQVIASYTATG--PEQLTLAPGQLILIRKKNPG 739
Query: 664 HWYEGRISGTGRQ---GIFPASYVQVSREPRLRLCEDGPQLPAS 786
W+EG + G++ G FPA+YV++ ++ P P +
Sbjct: 740 GWWEGELQARGKKRQIGWFPANYVKLLSPGTSKITPTEPPKPTA 783
>ref|XP_003125408.2| PREDICTED: LOW QUALITY PROTEIN: intersectin-2 [Sus scrofa].
Length = 1705
Score = 67.8 bits (164), Expect = 1e-11
Identities = 51/183 (27%), Positives = 89/183 (48%), Gaps = 10/183 (5%)
Frame = +1
Query: 247 LGCRDFVYPSSTRDPSASER--GASPXXXXXXXXXXXXLKFDFQAQSPKELTLKKGDIVY 420
+G R ++PS+ P E AS + + A ++L+L G ++
Sbjct: 1030 IGDRTGIFPSNYVKPKDQESFGSASKSGTSNKKPEIAQVTSAYVASGSEQLSLAPGQLIL 1089
Query: 421 IHKEVDKNWLEGEHHGG-----LGIFPANYVEVL-PADEIPKPIKPPTYQVLEYGEAVAQ 582
I K+ W +GE G FPA++V++L P+ E P P QV +A
Sbjct: 1090 ILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSSERTTPAFHPVCQV------IAM 1143
Query: 583 YNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQGIFPASYVQVS--REPRLRL 756
Y++ + E EL+F KG+ I ++ K + W++G I+G G+FP++YV+++ +P +
Sbjct: 1144 YDYIANNEDELNFSKGQLINVLNKDDPDWWQGEINGV--TGLFPSNYVKMTTDTDPSQQW 1201
Query: 757 CED 765
C D
Sbjct: 1202 CAD 1204
Score = 65.5 bits (158), Expect = 5e-11
Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Frame = +1
Query: 373 AQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEI----PKPI-- 534
A+ L K DI+ + E +NW GE HGG G FP +YV+++P E+ P+ +
Sbjct: 919 AKKDNHLNFSKHDIITV-LEQQENWWFGEVHGGRGWFPKSYVKIIPGSEVKREEPEALYA 977
Query: 535 ---KPPTYQVLEYGEA-VAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQ 702
K PT GE +A Y + +L+F +GE I + +K E W+ G I R
Sbjct: 978 AVNKKPTSAGCTVGEEYIALYPYSSVEPGDLTFAEGEEILVTQKDGE-WWTGSIG--DRT 1034
Query: 703 GIFPASYVQ 729
GIFP++YV+
Sbjct: 1035 GIFPSNYVK 1043
>ref|XP_003135018.2| PREDICTED: SH3 domain-containing kinase-binding protein 1 isoform 1
[Sus scrofa].
Length = 665
Score = 61.6 bits (148), Expect = 7e-10
Identities = 39/150 (26%), Positives = 77/150 (51%), Gaps = 25/150 (16%)
Frame = +1
Query: 355 LKFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPADEIPKPI 534
++FD+QAQ ELT+ G+I+ ++ D W EG+ +G G+FP N+V + + P+
Sbjct: 6 VEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIKKEMKKDPL 65
Query: 535 -----KPPTYQ-----VLEYGEAVAQYNFKGDL---------------EVELSFRKGERI 639
+ P ++ L E + + N +G+ + EL + G+ I
Sbjct: 66 SSKAPEKPMHEASSGNALLSSETILRTNKRGERRRRRCQVAFSYLPQNDDELELKVGDII 125
Query: 640 CLIRKVNEHWYEGRISGTGRQGIFPASYVQ 729
++ +V E W+EG ++ G+ G+FP+++++
Sbjct: 126 EVVGEVEEGWWEGVLN--GKTGMFPSNFIK 153
Score = 61.2 bits (147), Expect = 9e-10
Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 7/81 (8%)
Frame = +1
Query: 361 FDFQAQSPKELTLKKGDIV-YIHKE-VDKNWLEGEHHGGLGIFPANYVEVLPAD-----E 519
F ++AQ+ ELT+K+GDIV I+K+ +D W EGE +G G+FP N+V++LP D
Sbjct: 276 FPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFEKEGN 335
Query: 520 IPKPIKPPTYQVLEYGEAVAQ 582
PK PPT V++ G +
Sbjct: 336 RPKKPPPPTAPVIKQGAGTTE 356
>ref|XP_003360289.1| PREDICTED: SH3 domain-containing kinase-binding protein 1 isoform 2
[Sus scrofa].
Length = 628
Score = 61.2 bits (147), Expect = 9e-10
Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 7/81 (8%)
Frame = +1
Query: 361 FDFQAQSPKELTLKKGDIV-YIHKE-VDKNWLEGEHHGGLGIFPANYVEVLPAD-----E 519
F ++AQ+ ELT+K+GDIV I+K+ +D W EGE +G G+FP N+V++LP D
Sbjct: 239 FPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFEKEGN 298
Query: 520 IPKPIKPPTYQVLEYGEAVAQ 582
PK PPT V++ G +
Sbjct: 299 RPKKPPPPTAPVIKQGAGTTE 319
>ref|NP_001131103.1| cytoplasmic protein NCK2 [Sus scrofa].
Length = 376
Score = 58.5 bits (140), Expect = 6e-09
Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Frame = +1
Query: 355 LKFDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYV----EVLPADEI 522
+KF + A+ EL+L KG V + ++ W G ++G +G FP+NYV + AD
Sbjct: 118 VKFAYAAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQVGWFPSNYVLEELDEAAADTH 177
Query: 523 PKPIKPPTYQVLEYGEAV-------AQYNFKGDLEVELSFRKGERICLIRKV--NEHWYE 675
P P L G+++ Y F E EL+F KGE + +I K + W+
Sbjct: 178 GGPSLRPG-AALSNGQSLRVLHVVQTLYPFSSVTEEELNFDKGETMEVIEKPENDPEWWR 236
Query: 676 GRISGTGRQGIFPASYVQVSREPRLRLCEDGPQLPA 783
R + G+ G+ P +YV V E GP PA
Sbjct: 237 CR-NARGQVGLVPKNYVVVLSEGPALHAGSGPTGPA 271
>ref|XP_001925192.2| PREDICTED: endophilin-A1-like [Sus scrofa].
Length = 352
Score = 58.2 bits (139), Expect = 8e-09
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = +1
Query: 361 FDFQAQSPKELTLKKGDIVYIHKEVDKNWLEGEHHGGLGIFPANYVEVLPA 513
+DF+ ++ EL K+GDI+ + ++D+NW EG HG G FP NYVE+L A
Sbjct: 299 YDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYVEILVA 349
Score = 49.3 bits (116), Expect = 4e-06
Identities = 26/70 (37%), Positives = 41/70 (58%)
Frame = +1
Query: 523 PKPIKPPTYQVLEYGEAVAQYNFKGDLEVELSFRKGERICLIRKVNEHWYEGRISGTGRQ 702
PKP P Q A Y+F+ + E EL F++G+ I L +++E+WYEG + G+
Sbjct: 283 PKPAGAPMDQPC----CRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLH--GQS 336
Query: 703 GIFPASYVQV 732
G FP +YV++
Sbjct: 337 GFFPINYVEI 346
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.315 0.134 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,931,799
Number of extensions: 744924
Number of successful extensions: 3796
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 3714
Number of HSP's successfully gapped: 43
Length of query: 355
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 255
Effective length of database: 8,854,232
Effective search space: 2257829160
Effective search space used: 2257829160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003305
(1067 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 617 e-174
>Sscrofa_Chr14
|| Length = 153851969
Score = 617 bits (311), Expect = e-174
Identities = 311/311 (100%)
Strand = Plus / Plus
Query: 626 agggggagcgcatctgcctgatccgcaaggtgaatgagcactggtacgagggccgtatct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7306452 agggggagcgcatctgcctgatccgcaaggtgaatgagcactggtacgagggccgtatct 7306511
Query: 686 ccggcaccggacgccagggcatcttccctgccagctacgtgcaggtgagccgggagcccc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7306512 ccggcaccggacgccagggcatcttccctgccagctacgtgcaggtgagccgggagcccc 7306571
Query: 746 ggctccggctctgcgaagatggcccccagctgcctgcgtccccccgcctgaatgccaccc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7306572 ggctccggctctgcgaagatggcccccagctgcctgcgtccccccgcctgaatgccaccc 7306631
Query: 806 gcctggcccatcaccacagctccccgttaacgccgcacagcccagctgaccccaccgact 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7306632 gcctggcccatcaccacagctccccgttaacgccgcacagcccagctgaccccaccgact 7306691
Query: 866 ggggtggccggacctccccccgccgcactggcttctccttccctgcccaggagcccagac 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7306692 ggggtggccggacctccccccgccgcactggcttctccttccctgcccaggagcccagac 7306751
Query: 926 cccagactcag 936
|||||||||||
Sbjct: 7306752 cccagactcag 7306762
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 1 ccccctcgcgctcccttccgagccgcaaacttttccggaggcggcggcctcggcggcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7299692 ccccctcgcgctcccttccgagccgcaaacttttccggaggcggcggcctcggcggcagc 7299751
Query: 61 ggggaccggcgtcccgggccctgaccgcgcccgtctcccgcacagagctcgcaggcgccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7299752 ggggaccggcgtcccgggccctgaccgcgcccgtctcccgcacagagctcgcaggcgccc 7299811
Query: 121 cgacggtcccgggagccgcggcctccagcgtg 152
||||||||||||||||||||||||||||||||
Sbjct: 7299812 cgacggtcccgggagccgcggcctccagcgtg 7299843
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 152 gcccggcctccacctggagcgccagctccccgaatgcactttaccagggttcctccctga 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7300259 gcccggcctccacctggagcgccagctccccgaatgcactttaccagggttcctccctga 7300318
Query: 212 gcccccacaggatggcggatggaggaagccccttcctaggttgtagagactttgtctacc 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7300319 gcccccacaggatggcggatggaggaagccccttcctaggttgtagagactttgtctacc 7300378
Query: 272 cttcctcaacccgag 286
|||||||||||||||
Sbjct: 7300379 cttcctcaacccgag 7300393
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 500 aggtgctgcctgcagatgagatccccaagcccatcaagcctccaacctaccaggtgctgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7304017 aggtgctgcctgcagatgagatccccaagcccatcaagcctccaacctaccaggtgctgg 7304076
Query: 560 agtatggagaagctgtggcccagtacaacttcaagggggatctggaggttgaactttcct 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7304077 agtatggagaagctgtggcccagtacaacttcaagggggatctggaggttgaactttcct 7304136
Query: 620 tccgaaagg 628
|||||||||
Sbjct: 7304137 tccgaaagg 7304145
Score = 234 bits (118), Expect = 8e-59
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 387 ggagctgactctgaagaagggtgacattgtctacatccacaaagaggtggacaagaactg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7300991 ggagctgactctgaagaagggtgacattgtctacatccacaaagaggtggacaagaactg 7301050
Query: 447 gctggagggggagcaccatggcgggctgggtatcttccctgctaattacgtggaggtg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7301051 gctggagggggagcaccatggcgggctgggtatcttccctgctaattacgtggaggtg 7301108
Score = 168 bits (85), Expect = 4e-39
Identities = 104/109 (95%), Gaps = 1/109 (0%)
Strand = Plus / Plus
Query: 934 cagagtctcagcacccctgggtcagctctgtcccatcccggagtctccagccgtcccctg 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7307398 cagagtctcagcacccctgggtcagctctgtcccatcccggagtctccagccgtcccctg 7307457
Query: 994 gacccagggaactcttccctc-acaccactcagatacactggaacccgt 1041
|||| |||| |||||||||| ||||||||||||||||||||| |||||
Sbjct: 7307458 gaccaggggacctcttccctcaacaccactcagatacactggaccccgt 7307506
Score = 109 bits (55), Expect = 3e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 285 agaccctagtgcctcggaacgaggggccagcccagccaggaaggaagagaagaag 339
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7300576 agaccctagtgcctcggaacgaggggccagcccagccaggaaggaagagaagaag 7300630
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 338 agaggaaggccgccaggctcaagtttgacttccaggcacagtcccctaag 387
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7300770 agaggaaggccgccaggctcaagtttgacttccaggcacagtcccctaag 7300819
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,326,328
Number of extensions: 284
Number of successful extensions: 284
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 8
Length of query: 1067
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1046
Effective length of database: 2,808,413,156
Effective search space: 2937600161176
Effective search space used: 2937600161176
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)