Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003309
(1193 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002685908.1| PREDICTED: CD84 molecule-like [Bos taurus]. 493 e-139
Alignment gi|XP_588136.4| PREDICTED: CD84 molecule-like [Bos taurus]. 493 e-139
Alignment gi|NP_001178287.1| SLAM family member 7 [Bos taurus]. 125 6e-29
Alignment gi|XP_002685907.1| PREDICTED: SLAM family member 7-like [Bos ta... 125 6e-29
Alignment gi|XP_002685905.1| PREDICTED: SLAM family member 9 [Bos taurus]. 112 5e-25
Alignment gi|XP_870066.4| PREDICTED: SLAM family member 9 [Bos taurus]. 112 5e-25
Alignment gi|NP_001193293.1| SLAM family member 6 [Bos taurus]. 103 2e-22
Alignment gi|NP_001069386.1| T-lymphocyte surface antigen Ly-9 [Bos tauru... 102 5e-22
Alignment gi|NP_776609.2| signaling lymphocytic activation molecule [Bos ... 79 1e-14
Alignment gi|NP_001179279.1| natural killer cell receptor 2B4 [Bos taurus]. 73 6e-13
>ref|XP_002685908.1| PREDICTED: CD84 molecule-like [Bos taurus].
Length = 351
Score = 493 bits (1270), Expect = e-139
Identities = 255/343 (74%), Positives = 289/343 (84%), Gaps = 3/343 (0%)
Frame = +3
Query: 111 KKMAHRHTWILLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKT 290
K MAH H WILL CLQT L A GS+TDI IVNGILGES TF L+I S++V ISW+SKT
Sbjct: 11 KTMAHHHLWILLFCLQTCLEAAGSDTDIFIVNGILGESATFPLNIQPSQKVTIISWHSKT 70
Query: 291 SVAVVVPGNSGTT--ITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEK 464
SVA V PGN G +T+THQNY++R++VSG NYNLELRNLR+EDSGIYKADI V++ K
Sbjct: 71 SVAFVKPGNFGEEPIVTITHQNYHERISVSGQNYNLELRNLRIEDSGIYKADINVET-SK 129
Query: 465 VTTITKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGREGN 644
VTT T+ Y+LQVYRRL KPKIT+S +TS+N TCNVTL CSV+KEEKNVTYSWS G EGN
Sbjct: 130 VTT-TRSYNLQVYRRLEKPKITQSFVTSVNSTCNVTLMCSVDKEEKNVTYSWSPRGEEGN 188
Query: 645 VLQIFQTPDNQHLTYTCTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVF 824
VLQIFQTPDNQ TYTCTAWNPVSNNSDSISAQQLCADI + TRH GL+SGLAVLSV
Sbjct: 189 VLQIFQTPDNQEETYTCTAWNPVSNNSDSISAQQLCADITMTPHTRHTGLMSGLAVLSVL 248
Query: 825 IIIIPSVILCLMYKRGQGSYLKTFSKNPDADSKKTIYTYITAAKDAQTAEYRIYDEIPQS 1004
I+I+PSV+L L+ K+G+GS+LK FSKNPDA SKKTIYTYIT +++ Q AE RIYDEIPQS
Sbjct: 249 IVILPSVVLFLLCKKGEGSFLKNFSKNPDASSKKTIYTYITVSRNTQPAESRIYDEIPQS 308
Query: 1005 KVPPTKEEPVNTIYSIVQYSDKTEK-STQDSKPSGTSSYEIVI 1130
KV PTKEEPVNTIYSI+QYSDK EK STQ+SKP GTSSYEIVI
Sbjct: 309 KVLPTKEEPVNTIYSIMQYSDKMEKTSTQNSKPLGTSSYEIVI 351
>ref|XP_588136.4| PREDICTED: CD84 molecule-like [Bos taurus].
Length = 351
Score = 493 bits (1270), Expect = e-139
Identities = 255/343 (74%), Positives = 289/343 (84%), Gaps = 3/343 (0%)
Frame = +3
Query: 111 KKMAHRHTWILLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKT 290
K MAH H WILL CLQT L A GS+TDI IVNGILGES TF L+I S++V ISW+SKT
Sbjct: 11 KTMAHHHLWILLFCLQTCLEAAGSDTDIFIVNGILGESATFPLNIQPSQKVTIISWHSKT 70
Query: 291 SVAVVVPGNSGTT--ITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEK 464
SVA V PGN G +T+THQNY++R++VSG NYNLELRNLR+EDSGIYKADI V++ K
Sbjct: 71 SVAFVKPGNFGEEPIVTITHQNYHERISVSGQNYNLELRNLRIEDSGIYKADINVET-SK 129
Query: 465 VTTITKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGREGN 644
VTT T+ Y+LQVYRRL KPKIT+S +TS+N TCNVTL CSV+KEEKNVTYSWS G EGN
Sbjct: 130 VTT-TRSYNLQVYRRLEKPKITQSFVTSVNSTCNVTLMCSVDKEEKNVTYSWSPRGEEGN 188
Query: 645 VLQIFQTPDNQHLTYTCTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVF 824
VLQIFQTPDNQ TYTCTAWNPVSNNSDSISAQQLCADI + TRH GL+SGLAVLSV
Sbjct: 189 VLQIFQTPDNQEETYTCTAWNPVSNNSDSISAQQLCADITMTPHTRHTGLMSGLAVLSVL 248
Query: 825 IIIIPSVILCLMYKRGQGSYLKTFSKNPDADSKKTIYTYITAAKDAQTAEYRIYDEIPQS 1004
I+I+PSV+L L+ K+G+GS+LK FSKNPDA SKKTIYTYIT +++ Q AE RIYDEIPQS
Sbjct: 249 IVILPSVVLFLLCKKGEGSFLKNFSKNPDASSKKTIYTYITVSRNTQPAESRIYDEIPQS 308
Query: 1005 KVPPTKEEPVNTIYSIVQYSDKTEK-STQDSKPSGTSSYEIVI 1130
KV PTKEEPVNTIYSI+QYSDK EK STQ+SKP GTSSYEIVI
Sbjct: 309 KVLPTKEEPVNTIYSIMQYSDKMEKTSTQNSKPLGTSSYEIVI 351
>ref|NP_001178287.1| SLAM family member 7 [Bos taurus].
Length = 336
Score = 125 bits (315), Expect = 6e-29
Identities = 104/323 (32%), Positives = 155/323 (47%), Gaps = 11/323 (3%)
Frame = +3
Query: 135 WILLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWN-SKTSVAVVVP 311
+I LLC T A G + G +G SV F L+ L V SI W + T++ + P
Sbjct: 8 FIFLLCQLTGPAASGIPKKLV---GAIGGSVIFPLN-LSVNLVDSIIWVFNSTTLVTIQP 63
Query: 312 GNSG--TTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKC 485
+G + VT + +R+N Y+L+L L+ DSGIY+ +I +L+ +T+
Sbjct: 64 KTAGKKALVIVTQKRNLERVNFPHEGYSLKLSRLKKNDSGIYRVEIHSSTLQD--PLTQE 121
Query: 486 YDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHL------GREGNV 647
Y+L VY L KPK+ L + NGTC LTCS+E E++VTYSW L G++
Sbjct: 122 YELHVYEYLSKPKVVIGLQENKNGTCVTNLTCSMEHGEEDVTYSWKSLDQTTNESHRGSI 181
Query: 648 LQIFQTPDNQHLTYTCTAWNPVSNNSDS-ISAQQLCADIAVGLQTRHPGLLSGLAVLSVF 824
L I + +T+ C A NP+S+NS + I AQ LC + A G Q + L +LS F
Sbjct: 182 LPISWRWEKSDMTFICMASNPISSNSSNPIFAQNLC-EGAAGGQAPYVVL---YVLLSFF 237
Query: 825 III-IPSVILCLMYKRGQGSYLKTFSKNPDADSKKTIYTYITAAKDAQTAEYRIYDEIPQ 1001
++ + V++ + +R + + K D K + I E YD I
Sbjct: 238 LLCSLALVLIIFIIQRERKKEIIEEKKELDTHQKTLPFPPI-------PEEMPEYDTIST 290
Query: 1002 SKVPPTKEEPVNTIYSIVQYSDK 1070
+E P NTIYS V + K
Sbjct: 291 FNGTIPEENPANTIYSTVHIAPK 313
>ref|XP_002685907.1| PREDICTED: SLAM family member 7-like [Bos taurus].
Length = 336
Score = 125 bits (315), Expect = 6e-29
Identities = 104/323 (32%), Positives = 155/323 (47%), Gaps = 11/323 (3%)
Frame = +3
Query: 135 WILLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWN-SKTSVAVVVP 311
+I LLC T A G + G +G SV F L+ L V SI W + T++ + P
Sbjct: 8 FIFLLCQLTGPAASGIPKKLV---GAIGGSVIFPLN-LSVNLVDSIIWVFNSTTLVTIQP 63
Query: 312 GNSG--TTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKC 485
+G + VT + +R+N Y+L+L L+ DSGIY+ +I +L+ +T+
Sbjct: 64 KTAGKKALVIVTQKRNLERVNFPHEGYSLKLSRLKKNDSGIYRVEIHSSTLQD--PLTQE 121
Query: 486 YDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHL------GREGNV 647
Y+L VY L KPK+ L + NGTC LTCS+E E++VTYSW L G++
Sbjct: 122 YELHVYEYLSKPKVVIGLQENKNGTCVTNLTCSMEHGEEDVTYSWKSLDQTTNESHRGSI 181
Query: 648 LQIFQTPDNQHLTYTCTAWNPVSNNSDS-ISAQQLCADIAVGLQTRHPGLLSGLAVLSVF 824
L I + +T+ C A NP+S+NS + I AQ LC + A G Q + L +LS F
Sbjct: 182 LPISWRWEKSDMTFICMASNPISSNSSNPIFAQNLC-EGAAGGQAPYVVL---YVLLSFF 237
Query: 825 III-IPSVILCLMYKRGQGSYLKTFSKNPDADSKKTIYTYITAAKDAQTAEYRIYDEIPQ 1001
++ + V++ + +R + + K D K + I E YD I
Sbjct: 238 LLCSLALVLIIFIIQRERKKEIIEEKKELDTHQKTLPFPPI-------PEEMPEYDTIST 290
Query: 1002 SKVPPTKEEPVNTIYSIVQYSDK 1070
+E P NTIYS V + K
Sbjct: 291 FNGTIPEENPANTIYSTVHIAPK 313
>ref|XP_002685905.1| PREDICTED: SLAM family member 9 [Bos taurus].
Length = 336
Score = 112 bits (281), Expect = 5e-25
Identities = 75/214 (35%), Positives = 108/214 (50%), Gaps = 11/214 (5%)
Frame = +3
Query: 117 MAHRHTWILLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKT-- 290
M W LLL L +G S + +V G LG SVT L + ++V+SISW S++
Sbjct: 1 MGFSFLWSLLL-LGLLIGPGASRAPM-VVTGTLGGSVTLPLQLQDGQQVESISWVSRSVP 58
Query: 291 ---SVAVVVPGNSGTTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLE 461
+ +V T Y+ RL+V G + +L++ +L D+G Y+A I ++S
Sbjct: 59 GAIATVTLVEAGGPDTFHQEESRYWGRLSVVGPDRSLQISHLNWADAGSYRAHINLRSSR 118
Query: 462 KVTTITKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGRE- 638
T T+ Y L VY L +P++T S S NG C + LTC E VTYSW LG +
Sbjct: 119 --LTHTREYSLHVYEPLAQPRVTVSTRISGNGHCLIILTCVAESRGGTVTYSWVPLGPQT 176
Query: 639 -----GNVLQIFQTPDNQHLTYTCTAWNPVSNNS 725
G+VL + P + L +TC NPVSN+S
Sbjct: 177 TVSHGGSVLSVSLRPGDSALNFTCMVKNPVSNSS 210
Score = 54.7 bits (130), Expect = 2e-07
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Frame = +3
Query: 516 KPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGR-----EGNVLQIFQTPDNQH 680
+PKIT S +GTC +TL C +++ ++V YSW G+ G
Sbjct: 226 EPKITASSQIMKDGTCFITLACLLDQAGEDVQYSWDPQGQGAVVSHGGTTLSISWRSGVS 285
Query: 681 LTYTCTAWNPVSNNSDSISAQQLCA 755
+Y CT NPVS +S SIS + LC+
Sbjct: 286 DSYHCTVKNPVSQSSSSISIKPLCS 310
>ref|XP_870066.4| PREDICTED: SLAM family member 9 [Bos taurus].
Length = 336
Score = 112 bits (281), Expect = 5e-25
Identities = 75/214 (35%), Positives = 108/214 (50%), Gaps = 11/214 (5%)
Frame = +3
Query: 117 MAHRHTWILLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKT-- 290
M W LLL L +G S + +V G LG SVT L + ++V+SISW S++
Sbjct: 1 MGFSFLWSLLL-LGLLIGPGASRAPM-VVTGTLGGSVTLPLQLQDGQQVESISWVSRSVP 58
Query: 291 ---SVAVVVPGNSGTTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLE 461
+ +V T Y+ RL+V G + +L++ +L D+G Y+A I ++S
Sbjct: 59 GAIATVTLVEAGGPDTFHQEESRYWGRLSVVGPDRSLQISHLNWADAGSYRAHINLRSSR 118
Query: 462 KVTTITKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGRE- 638
T T+ Y L VY L +P++T S S NG C + LTC E VTYSW LG +
Sbjct: 119 --LTHTREYSLHVYEPLAQPRVTVSTRISGNGHCLIILTCVAESRGGTVTYSWVPLGPQT 176
Query: 639 -----GNVLQIFQTPDNQHLTYTCTAWNPVSNNS 725
G+VL + P + L +TC NPVSN+S
Sbjct: 177 TVSHGGSVLSVSLRPGDSALNFTCMVKNPVSNSS 210
Score = 54.7 bits (130), Expect = 2e-07
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Frame = +3
Query: 516 KPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGR-----EGNVLQIFQTPDNQH 680
+PKIT S +GTC +TL C +++ ++V YSW G+ G
Sbjct: 226 EPKITASSQIMKDGTCFITLACLLDQAGEDVQYSWDPQGQGAVVSHGGTTLSISWRSGVS 285
Query: 681 LTYTCTAWNPVSNNSDSISAQQLCA 755
+Y CT NPVS +S SIS + LC+
Sbjct: 286 DSYHCTVKNPVSQSSSSISIKPLCS 310
>ref|NP_001193293.1| SLAM family member 6 [Bos taurus].
Length = 334
Score = 103 bits (258), Expect = 2e-22
Identities = 90/298 (30%), Positives = 133/298 (44%), Gaps = 10/298 (3%)
Frame = +3
Query: 198 IVNGILGESVTFSLSILKSEEVKSISW-NSKTSVAVVVPGNSGTTITVTHQNYYDRLNVS 374
+VNG+L ESVT E + I+W + +SV + P + I VT D+LNV+
Sbjct: 49 VVNGVLRESVTLPSKFPVKENITFITWLHEGSSVIFIWPKEA--KIQVTDPKRKDQLNVT 106
Query: 375 GLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYDLQVYRRLGKPKITRSLMTSMN 554
+Y+L L NL M D G Y+A IT + +++ Y+LQ++RRL ++ S N
Sbjct: 107 E-SYSLHLNNLSMADVGHYRAQITTST----SSLNTDYNLQIFRRLSNLQVAHHTTWSEN 161
Query: 555 GTCNVTLTCSVEKEEKNVTYSWSHLGR----EGNVLQIFQTPDNQHLTYTCTAWNPVSNN 722
TC + L CSVE NV++ W G E N+ + TYTC A NPVS
Sbjct: 162 NTCEIQLMCSVENPNDNVSFRWQVAGNPYHSEANLSISWDPKSLSEETYTCIAENPVSYL 221
Query: 723 SDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVFIIIIPSVILCLMYKRGQGS--YLKTF 896
S S+S + +C + G L + III V+ C Q + + +T
Sbjct: 222 SFSVSDKSVCEGVINGKN----------EYLDIRWIIIVVVLTCFFQLSTQQTQCHAETV 271
Query: 897 SKNPDA--DSKKTIYTYITAAKDAQTAEYRIYDEIPQSKVPP-TKEEPVNTIYSIVQY 1061
S A S T+Y +T + ++K+P K TIYS V +
Sbjct: 272 SNLEYASFSSGNTVYAQVTHSN-------------KETKIPKLVKNYDSTTIYSEVNH 316
>ref|NP_001069386.1| T-lymphocyte surface antigen Ly-9 [Bos taurus].
Length = 548
Score = 102 bits (255), Expect = 5e-22
Identities = 72/219 (32%), Positives = 113/219 (51%), Gaps = 8/219 (3%)
Frame = +3
Query: 129 HTWILLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKTSVAVVV 308
+ W LLL L GA ++ T+V I+G SV SL+I E++ I+W+ A+V+
Sbjct: 31 YLWTLLLFLLLGQGASEKDSASTVVKAIVGGSVILSLNISVDAEIEQITWSGPKD-ALVL 89
Query: 309 PGNSGTTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCY 488
SG I ++Y R+N+ N +L + L ++D+G YKA I K E + +
Sbjct: 90 AFPSG-EILFLDKSYKGRINIP-KNNSLSINKLTLKDAGSYKARINQKGSE---DFNERF 144
Query: 489 DLQVYRRLGKPKIT-RSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGREGN------V 647
L +Y +L +P++T +S+ S N +C +TL CSVE ++ Y W+ +
Sbjct: 145 ILYIYEQLQEPQVTIQSVNVSENASCTITLVCSVEGAGGDIQYKWTSRDPHASESWGHPT 204
Query: 648 LQIFQTPDNQHLTYTCTAWNPVS-NNSDSISAQQLCADI 761
L I P + L YTCTA NPVS ++S + Q C D+
Sbjct: 205 LTISWLPCDADLPYTCTAKNPVSQSSSHPVHVSQFCTDL 243
>ref|NP_776609.2| signaling lymphocytic activation molecule [Bos taurus].
Length = 338
Score = 78.6 bits (192), Expect = 1e-14
Identities = 87/319 (27%), Positives = 145/319 (45%), Gaps = 21/319 (6%)
Frame = +3
Query: 141 LLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKTSVAVVVPGNS 320
L++ L R G +++ TI+ G LG SV L+ SEE+ S S N + V + +
Sbjct: 17 LIIELSCRTGEGLTSSTKTIL-GQLGSSVLLPLA---SEEI-SRSMNKSIHILVTMAESP 71
Query: 321 GTTITVT------HQNYYDRLNVSGLNYNLELRNLRM-----EDSGIYKADITVKSLEKV 467
T+ + RLN G ++LE +LR+ ED G Y + E V
Sbjct: 72 KDTVKKKIVSLDLRKGDSPRLN-DGYEFHLENLSLRILKSRKEDEGWYFISLE----ENV 126
Query: 468 TTITKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLG----- 632
+ L++Y ++ P+I T +G C++ L C VEK + +VTY+WS
Sbjct: 127 SVQHFSLQLKLYEQVSTPQIKVLNTTQEDGNCSLMLACMVEKGD-HVTYNWSEEAGVPLL 185
Query: 633 ---REGNVLQIFQTPDNQHLTYTCTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGLLSG 803
++L + P + + Y CT NP+SN+S + C+ A ++R GL +G
Sbjct: 186 SPTNSSHLLYLTLGPQHANNVYICTVSNPISNSSQTFIPWPSCSSSAP--ESRQWGLYAG 243
Query: 804 LAVLSVF-IIIIPSVILCLMYKRGQGSYLKTFSKNPDADSKK-TIYTYITAAKDAQTAEY 977
L + + II+I V++ L+ +RG KT + P ++K TIY + + Q
Sbjct: 244 LFLGGIVGIIMILQVVILLLRRRG-----KTDNYQPTTEAKSLTIYAQVQTSGSVQKKPD 298
Query: 978 RIYDEIPQSKVPPTKEEPV 1034
+ + P + + EPV
Sbjct: 299 PLPAQDPCTTIYVAATEPV 317
>ref|NP_001179279.1| natural killer cell receptor 2B4 [Bos taurus].
Length = 373
Score = 72.8 bits (177), Expect = 6e-13
Identities = 85/358 (23%), Positives = 147/358 (41%), Gaps = 37/358 (10%)
Frame = +3
Query: 165 LGAVGSNTDITIVNGILGESVTFSLSILKSEEV----KSISWNSKTSVAVVVP-GNSGTT 329
LG V + T + ++ G G+ T + + E V +S+ N+ + + P NS
Sbjct: 2 LGQVLALTLLLLIKGHQGQGSTDHVVGISGEPVWLRPRSLQTNTYSVKWKIQPYSNSSNC 61
Query: 330 ITVTHQNYYDRL-----------------NVSGLNYNLELRNLRMEDSGIYKADIT--VK 452
T + NY R+ N + ++ L + + +DSG+Y ++T
Sbjct: 62 FTWSWSNYSGRIEVRRTLGQNPNCFNKSFNFTSKDFTLLIEAAQPQDSGLYILEVTSHAG 121
Query: 453 SLEKVTTITKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSW---- 620
++ K ++ + R+ KP + G C VTL+CSV + +V+Y+W
Sbjct: 122 NVWKHQFNVSIFESLLLDRVEKPHLVEKWKVLDGGICQVTLSCSVARGG-DVSYAWYKGS 180
Query: 621 SHLGREGNVLQIFQTPD-NQHLTYTCTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGLL 797
+ + GN+ ++ + D N YTC NPVS + S+ Q C Q+ H
Sbjct: 181 NLIQIPGNITELVENIDVNASHVYTCNVSNPVSWANHSLQLTQGC-------QSDHQDFT 233
Query: 798 SGLAVLSVFIIIIPSVILCLMYKRGQGSYLKTFSKNPDADSKKTIYTYITAAKDAQTAEY 977
+ ++S+ I+++ + L Y K +P TIY + + E
Sbjct: 234 FLIILVSIVILLVALFLSTLTYICVWRRKRKQSRTSPKV---LTIYEDVNNLRTRSNQEQ 290
Query: 978 R-------IYDEIPQSKVPPTKEEPVNTIYSIVQYSDKT-EKSTQDSKPSGTSSYEIV 1127
+ IY I T ++ NT+YS+VQ S KT K T+ S + YE V
Sbjct: 291 KPLGEGNTIYSTIQAQASASTSQDNANTLYSLVQASWKTGSKKTKQSPSFDKTIYEEV 348
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,466,317
Number of extensions: 1210083
Number of successful extensions: 4159
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4110
Number of HSP's successfully gapped: 18
Length of query: 397
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 293
Effective length of database: 14,240,222
Effective search space: 4172385046
Effective search space used: 4172385046
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003309
(1193 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545758.2| PREDICTED: similar to CD84 antigen (leukocyte a... 356 2e-98
Alignment gi|XP_545760.2| PREDICTED: similar to lymphocyte antigen 9 [Can... 129 4e-30
Alignment gi|XP_852458.1| PREDICTED: similar to SLAM family member 7 [Can... 103 3e-22
Alignment gi|XP_545751.2| PREDICTED: similar to immunoglobulin superfamil... 84 3e-16
Alignment gi|NP_001003084.1| signaling lymphocytic activation molecule pr... 82 1e-15
Alignment gi|XP_545761.2| PREDICTED: similar to CD244 natural killer cell... 62 1e-09
Alignment gi|XP_854879.1| PREDICTED: similar to SLAM family member 9 [Can... 54 2e-07
>ref|XP_545758.2| PREDICTED: similar to CD84 antigen (leukocyte antigen) [Canis
familiaris].
Length = 619
Score = 356 bits (914), Expect = 2e-98
Identities = 184/284 (64%), Positives = 219/284 (77%), Gaps = 2/284 (0%)
Frame = +3
Query: 165 LGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKTSVAVVVPGNSGTT--ITV 338
L A +TDI V G LGESVTF L+I +S++V +I WNS+TSVA V PG+S T +TV
Sbjct: 151 LEAARGDTDILTVIGTLGESVTFPLNIQESQQVINIVWNSETSVAFVTPGDSETAPKVTV 210
Query: 339 THQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYDLQVYRRLGK 518
THQNY DR+NVS NYNLE+ NLRMEDSGIYKADI K LE + T T+ Y+LQV+RRLGK
Sbjct: 211 THQNYNDRINVSRQNYNLEISNLRMEDSGIYKADINTKILEGMVTTTRRYNLQVFRRLGK 270
Query: 519 PKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGREGNVLQIFQTPDNQHLTYTCT 698
PKIT+S MTS+N TCNVTLTCSVEKEE+NVTYSWS LG EGN ++IFQTPD+Q LTYTCT
Sbjct: 271 PKITQSSMTSINSTCNVTLTCSVEKEEENVTYSWSPLGEEGNAIRIFQTPDSQRLTYTCT 330
Query: 699 AWNPVSNNSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVFIIIIPSVILCLMYKRGQG 878
AWNPVSN+SDSIS QLCAD A G ++RH GLLSGL +LS+FI ++PS +L LM +RGQ
Sbjct: 331 AWNPVSNSSDSISGLQLCADAATGPRSRHTGLLSGLVMLSLFIFVVPSFLLFLMCRRGQ- 389
Query: 879 SYLKTFSKNPDADSKKTIYTYITAAKDAQTAEYRIYDEIPQSKV 1010
DA S+KTIYTY+ +DA A+ RIYDEIP SK+
Sbjct: 390 ----------DAISRKTIYTYVMVTRDAPPADGRIYDEIPHSKL 423
>ref|XP_545760.2| PREDICTED: similar to lymphocyte antigen 9 [Canis familiaris].
Length = 636
Score = 129 bits (325), Expect = 4e-30
Identities = 88/227 (38%), Positives = 125/227 (55%), Gaps = 11/227 (4%)
Frame = +3
Query: 105 PWKKMAHRHT---WILLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSIS 275
PWK H + W LL L GA G ++ V GIL SVTF L+I +E++ ++
Sbjct: 20 PWKSQPHAFSSFLWNSLLFLFLGPGASGKDSAQMEVPGILEGSVTFILNISIDKELEHVT 79
Query: 276 WNSKTSVAVVVPGNSGTTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKS 455
W+ N+ I + ++Y DRLN+S +Y+L L NL +ED+G YKA I K+
Sbjct: 80 WSRPQKALAFA--NAQKDIIIMDKSYQDRLNISFNSYSLSLNNLTLEDAGPYKAQINYKN 137
Query: 456 LEKVTTITKCYDLQVYRRLGKPK-ITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSW---- 620
KVTT K + L +Y ++ +P+ I +S+ S +G+CN+TL C VEK +V YSW
Sbjct: 138 -AKVTT-DKEFFLHLYEQVQEPQVIIKSVNKSDSGSCNITLICFVEKARTSVLYSWTGRD 195
Query: 621 --SHLGREGNVLQIFQTPDNQHLTYTCTAWNPVSNNSDS-ISAQQLC 752
+ EG+ L I T + L YTCTA NPVS N+ S + QQ C
Sbjct: 196 ANASESHEGSTLTIQWTLCHPDLPYTCTARNPVSQNTSSPVRVQQFC 242
Score = 106 bits (265), Expect = 4e-23
Identities = 87/309 (28%), Positives = 139/309 (44%), Gaps = 6/309 (1%)
Frame = +3
Query: 201 VNGILGESVTFSLSILKSEEVKSISWNSKTSVAVVVPGNSGTTITVTHQNYYDRLNVSGL 380
V G+LGESVT L+ S ++++ W TS+ T + D S
Sbjct: 257 VVGVLGESVTLPLTFSASHHIENVIWMLNTSIISKEQKEMATADPPI--KFKDPNKNSSQ 314
Query: 381 NYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYDLQVYRRLGKPKITRSLMTSMNGT 560
+++L++ ++ME++G Y A + ++ + T K L VY RL KPKIT SL + N
Sbjct: 315 DFSLKIDQVKMENAGHYSAYVCSEASRVIKT--KHITLLVYGRLKKPKITWSLELAENDI 372
Query: 561 CNVTLTCSVEKEEKNVTYSWSHL------GREGNVLQIFQTPDNQHLTYTCTAWNPVSNN 722
C V+LTCSVE NVTY W+ L + G L +F T H +TC A NPVS++
Sbjct: 373 CRVSLTCSVEDSGHNVTYRWTPLPKGTIESQRGPHLNVFWTSGENHPNFTCIASNPVSSS 432
Query: 723 SDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVFIIIIPSVILCLMYKRGQGSYLKTFSK 902
S + +C PG + V ++ ++LC + ++ K
Sbjct: 433 SQQFLSGNIC-----------PGPKRSMKFYIVIFTVMAVIVLCFV-----TTWCIWKRK 476
Query: 903 NPDADSKKTIYTYITAAKDAQTAEYRIYDEIPQSKVPPTKEEPVNTIYSIVQYSDKTEKS 1082
P + + T T + + Y+ D +PQ P K++ +T SD +E S
Sbjct: 477 RPSCTMRLKLTTGRTLC-NMLSQGYQELDTLPQ----PAKQQTRST-------SDGSETS 524
Query: 1083 TQDSKPSGT 1109
+D + + T
Sbjct: 525 EEDQERTDT 533
>ref|XP_852458.1| PREDICTED: similar to SLAM family member 7 [Canis familiaris].
Length = 810
Score = 103 bits (257), Expect = 3e-22
Identities = 68/196 (34%), Positives = 101/196 (51%), Gaps = 10/196 (5%)
Frame = +3
Query: 207 GILGESVTFSLSILKSEEVKSISWNSKTSVAVVVPGNSG---TTITVTHQNYYDRLNVSG 377
G LG SVTF L+ L ++ SI W T+ + + + + VTH + R++
Sbjct: 31 GDLGGSVTFPLT-LPGIQIDSIVWTFNTTPLITIQPRTPDRQANVIVTHSHNKKRVDFLH 89
Query: 378 LNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYDLQVYRRLGKPKITRSLMTSMNG 557
NY+L+L L DSG Y I S ++ ++ Y L+VY L KPK+T L NG
Sbjct: 90 GNYSLKLSKLNKSDSGDYYVVIYSSSFKE--PFSQRYGLRVYEHLSKPKVTMGLQNKENG 147
Query: 558 TCNVTLTCSVEKEEKNVTYSWSHLGR------EGNVLQIFQTPDNQHLTYTCTAWNPVSN 719
TC LTC V++ ++VTYSW LG+ G++L I +T+ C A NP+S+
Sbjct: 148 TCVTNLTCFVDQGGEDVTYSWESLGQAANKSYNGSILPISWRLGKGGMTFICVARNPISS 207
Query: 720 NSDS-ISAQQLCADIA 764
NS + + A +LC A
Sbjct: 208 NSSNPVFAWKLCEGAA 223
>ref|XP_545751.2| PREDICTED: similar to immunoglobulin superfamily, member 9 [Canis
familiaris].
Length = 1474
Score = 84.0 bits (206), Expect = 3e-16
Identities = 48/128 (37%), Positives = 77/128 (60%), Gaps = 2/128 (1%)
Frame = +3
Query: 138 ILLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKTSVAVVVPGN 317
+LLL L+ G G + D V G+L ES++ + I EEV++I W+S S+AVV+PG
Sbjct: 29 LLLLLLRAAEGYSGDDVDAEEVVGVLQESISLPVEIPADEEVENIIWSSSASLAVVIPGR 88
Query: 318 SG--TTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYD 491
G T I +T+ Y R+++ G +Y+L + NL EDSG+Y A + +++ + + + Y
Sbjct: 89 EGQPTKIVLTNPRYQRRVSLVGPDYSLCISNLSWEDSGLYYAQVNLRTSQ--ASSMQRYS 146
Query: 492 LQVYRRLG 515
L+VYR G
Sbjct: 147 LRVYRGRG 154
>ref|NP_001003084.1| signaling lymphocytic activation molecule precursor [Canis lupus
familiaris].
Length = 342
Score = 82.0 bits (201), Expect = 1e-15
Identities = 99/343 (28%), Positives = 153/343 (44%), Gaps = 31/343 (9%)
Frame = +3
Query: 138 ILLLCLQTRL--GAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKTSVAVVV- 308
+L+L L ++L G S + V G LG S+ SL+ + IS S+ ++V
Sbjct: 12 LLVLALASKLSCGTGESLMNCPEVPGKLGSSLQLSLAS------EGISKRMNKSIHILVT 65
Query: 309 ----PGNSGTTITVT---HQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKV 467
PGNS V+ + R +G ++LE LR+ +S +LE+
Sbjct: 66 RAESPGNSIKKKIVSLDLPEGGSPRYLENGYKFHLENLTLRILESRRENEGWYFMTLEEN 125
Query: 468 TTITK-CYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSH-LG--- 632
++ C L++Y ++ P+I T NG C++ L C VEK + NV YSWS LG
Sbjct: 126 FSVQHFCLQLKLYEQVSTPEIKVLNWTQENGNCSMMLACEVEKGD-NVVYSWSEKLGIDP 184
Query: 633 ----REGNVLQIFQTPDNQHLTYTCTAWNPVSNNSDSISAQQLC-ADIAVGLQTR-HPGL 794
++L + P + + Y CT NPVSN S S + C + +V Q R + GL
Sbjct: 185 LIPANSSHLLHLSLGPQHVNNVYVCTVSNPVSNRSWSFNPWSKCRPESSVPRQWRLYAGL 244
Query: 795 -LSGLAVLSVFIIIIPSVILCLMYKRGQGSYLKTFSKNPDADSKK-TIYTYITAAKDAQT 968
L G+ V +I+I V+L L+ +RG+ ++ K P + K TIY + + Q
Sbjct: 245 FLGGI----VGVILIFEVVLLLLRRRGKTNHYK-----PTKEEKSLTIYAQVQKSGSTQK 295
Query: 969 AEYRIYDEIP--------QSKVPPTKEEPVNTIYSIVQYSDKT 1073
+ E P VP EPV +SI Y+ T
Sbjct: 296 KPDPLPAEDPCTTIYVAATEPVPEPAPEPVQEPHSITVYASVT 338
>ref|XP_545761.2| PREDICTED: similar to CD244 natural killer cell receptor 2B4 [Canis
familiaris].
Length = 285
Score = 62.0 bits (149), Expect = 1e-09
Identities = 62/279 (22%), Positives = 116/279 (41%), Gaps = 19/279 (6%)
Frame = +3
Query: 348 NYYD-RLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYDLQVYRRLGKPK 524
N++D +L+ + N L ++ +R+ SG Y ++T E + + ++ + P+
Sbjct: 5 NHFDSKLSFTTENLALLIKAVRLNHSGCYNLEVTD---ENGKVDNHYFQVSIFDHIEMPQ 61
Query: 525 ITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSH----LGREGNVLQIFQTPDNQHLTYT 692
I + TC + L+CSV NV+Y+W + E N+ + + N YT
Sbjct: 62 ILKEWRVLEGDTCQLFLSCSVSSSG-NVSYAWYRGSELIQTEMNLTRSEEQVVNDSYIYT 120
Query: 693 CTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVFIIIIPSVILCLMYKRG 872
C NPVS+ + ++ Q C + + ++ G+ +L +F++ + + KR
Sbjct: 121 CNVSNPVSSANHTLRLTQGCPTASKQDNFVYFLVIVGICLLILFLVTLTCFCVWRRKKRQ 180
Query: 873 QGSYLKTF--------------SKNPDADSKKTIYTYITAAKDAQTAEYRIYDEIPQSKV 1010
+ ++NP + TIY+ I + QS
Sbjct: 181 SAPPARPHPLRAPPYRLRGCEQNQNPPGEG-STIYSVIQS----------------QSSA 223
Query: 1011 PPTKEEPVNTIYSIVQYSDKTEKSTQDSKPSGTSSYEIV 1127
P ++E NT+Y++VQ S K+E S + YE V
Sbjct: 224 PTSQEN--NTLYALVQPSRKSESKKNQSSSFSHTIYEEV 260
>ref|XP_854879.1| PREDICTED: similar to SLAM family member 9 [Canis familiaris].
Length = 916
Score = 54.3 bits (129), Expect = 2e-07
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Frame = +3
Query: 132 TWIL-LLCLQTRLGAVGSNTDITIVN--GILGESVTFSL----SILKSEEVKSISW---- 278
+W+L L L +G+ G+ + V+ G+ G SV+F + + +E++ ISW
Sbjct: 661 SWLLGLTSLILSVGSPGTQSSGNAVSLKGMQGASVSFHVIRNPDLPPVDELEKISWGIVF 720
Query: 279 -NSKTSVAVVVPGNSGTTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKS 455
++ + V PG + R++V + L + NL +ED+G+Y+A S
Sbjct: 721 RSNYIVMLQVFPGADVPEWVNWQDKFQKRVHVFNIT-TLRIDNLTLEDTGLYRAR---DS 776
Query: 456 LEKVTTITKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGR 635
+ + + L VY L P+I + ++ G CNVT+ C +++T SW G
Sbjct: 777 YTRGRQYDQDFHLTVYEPLPLPQIRTTNLSITPGWCNVTVQCDAPGTREDLTMSWESKGL 836
Query: 636 EGNVLQ-------------IFQTPDNQ-HLTYTCTAWNPVSNNSDSISAQQLC 752
+ Q P NQ + + TC N V + ++ +C
Sbjct: 837 PRELEQREATGPAPNPWTLALSLPLNQPNASLTCVLRNQVDQTTATLDLGDIC 889
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,384,439
Number of extensions: 1243542
Number of successful extensions: 4061
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4041
Number of HSP's successfully gapped: 8
Length of query: 397
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 292
Effective length of database: 15,374,224
Effective search space: 4489273408
Effective search space used: 4489273408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003309
(1193 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171808.1| SLAM family member 5 isoform 1 [Homo sapiens]. 429 e-120
Alignment gi|NP_003865.1| SLAM family member 5 isoform 2 [Homo sapiens]. 414 e-116
Alignment gi|NP_001171810.1| SLAM family member 5 isoform 3 [Homo sapiens]. 325 6e-91
Alignment gi|NP_001171811.1| SLAM family member 5 isoform 4 [Homo sapiens]. 278 9e-75
Alignment gi|NP_001171643.1| SLAM family member 6 isoform 1 precursor [Ho... 138 1e-32
Alignment gi|NP_443163.1| SLAM family member 6 isoform 2 precursor [Homo ... 134 1e-31
Alignment gi|NP_067004.3| SLAM family member 7 [Homo sapiens]. 132 8e-31
Alignment gi|NP_254273.2| SLAM family member 9 isoform 1 [Homo sapiens]. 128 1e-29
Alignment gi|NP_002339.2| T-lymphocyte surface antigen Ly-9 isoform a [Ho... 122 5e-28
Alignment gi|NP_001171644.1| SLAM family member 6 isoform 3 precursor [Ho... 105 6e-23
>ref|NP_001171808.1| SLAM family member 5 isoform 1 [Homo sapiens].
Length = 345
Score = 429 bits (1102), Expect = e-120
Identities = 227/347 (65%), Positives = 271/347 (78%), Gaps = 9/347 (2%)
Frame = +3
Query: 117 MAHRHTWILLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKTSV 296
MA H WILLLCLQT A G +++I VNGILGESVTF ++I + +VK I+W SKTSV
Sbjct: 1 MAQHHLWILLLCLQTWPEAAGKDSEIFTVNGILGESVTFPVNIQEPRQVKIIAWTSKTSV 60
Query: 297 AVVVPGNSGTT--ITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVT 470
A V PG+S T +TVTH+NYY+R++ G NYNL + +LRMED+G YKADI ++
Sbjct: 61 AYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAGDYKADINTQA--DPY 118
Query: 471 TITKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGREGNVL 650
T TK Y+LQ+YRRLGKPKIT+SLM S+N TCNVTLTCSVEKEEKNVTY+WS LG EGNVL
Sbjct: 119 TTTKRYNLQIYRRLGKPKITQSLMASVNSTCNVTLTCSVEKEEKNVTYNWSPLGEEGNVL 178
Query: 651 QIFQTPDNQHLTYTCTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVFII 830
QIFQTP++Q LTYTCTA NPVSNNSDSISA+QLCADIA+G +T H GLLS LA+ + ++
Sbjct: 179 QIFQTPEDQELTYTCTAQNPVSNNSDSISARQLCADIAMGFRTHHTGLLSVLAMFFLLVL 238
Query: 831 IIPSVILCLMYKRGQ------GSYLKTFSKNPDADSKKTIYTYITAAKDAQTAEYRIYDE 992
I+ SV L ++KR Q GS L TF+KNP A SKKTIYTYI A+++ Q AE RIYDE
Sbjct: 239 ILSSVFLFRLFKRRQGRIFPEGSCLNTFTKNPYAASKKTIYTYIMASRNTQPAESRIYDE 298
Query: 993 IPQSKVPPTKEEPVNTIYSIVQYSDKTEK-STQDSKPSGTSSYEIVI 1130
I QSKV P+KEEPVNT+YS VQ++DK K STQDSKP GTSSYEIVI
Sbjct: 299 ILQSKVLPSKEEPVNTVYSEVQFADKMGKASTQDSKPPGTSSYEIVI 345
>ref|NP_003865.1| SLAM family member 5 isoform 2 [Homo sapiens].
Length = 328
Score = 414 bits (1064), Expect = e-116
Identities = 220/341 (64%), Positives = 263/341 (77%), Gaps = 3/341 (0%)
Frame = +3
Query: 117 MAHRHTWILLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKTSV 296
MA H WILLLCLQT A G +++I VNGILGESVTF ++I + +VK I+W SKTSV
Sbjct: 1 MAQHHLWILLLCLQTWPEAAGKDSEIFTVNGILGESVTFPVNIQEPRQVKIIAWTSKTSV 60
Query: 297 AVVVPGNSGTT--ITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVT 470
A V PG+S T +TVTH+NYY+R++ G NYNL + +LRMED+G YKADI ++
Sbjct: 61 AYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAGDYKADINTQA--DPY 118
Query: 471 TITKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGREGNVL 650
T TK Y+LQ+YRRLGKPKIT+SLM S+N TCNVTLTCSVEKEEKNVTY+WS LG EGNVL
Sbjct: 119 TTTKRYNLQIYRRLGKPKITQSLMASVNSTCNVTLTCSVEKEEKNVTYNWSPLGEEGNVL 178
Query: 651 QIFQTPDNQHLTYTCTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVFII 830
QIFQTP++Q LTYTCTA NPVSNNSDSISA+QLCADIA+G +T H GLLS LA+ + ++
Sbjct: 179 QIFQTPEDQELTYTCTAQNPVSNNSDSISARQLCADIAMGFRTHHTGLLSVLAMFFLLVL 238
Query: 831 IIPSVILCLMYKRGQGSYLKTFSKNPDADSKKTIYTYITAAKDAQTAEYRIYDEIPQSKV 1010
I+ SV L ++KR Q DA SKKTIYTYI A+++ Q AE RIYDEI QSKV
Sbjct: 239 ILSSVFLFRLFKRRQ-----------DAASKKTIYTYIMASRNTQPAESRIYDEILQSKV 287
Query: 1011 PPTKEEPVNTIYSIVQYSDKTEK-STQDSKPSGTSSYEIVI 1130
P+KEEPVNT+YS VQ++DK K STQDSKP GTSSYEIVI
Sbjct: 288 LPSKEEPVNTVYSEVQFADKMGKASTQDSKPPGTSSYEIVI 328
>ref|NP_001171810.1| SLAM family member 5 isoform 3 [Homo sapiens].
Length = 272
Score = 325 bits (833), Expect(2) = 6e-91
Identities = 166/260 (63%), Positives = 204/260 (78%), Gaps = 2/260 (0%)
Frame = +3
Query: 117 MAHRHTWILLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKTSV 296
MA H WILLLCLQT A G +++I VNGILGESVTF ++I + +VK I+W SKTSV
Sbjct: 1 MAQHHLWILLLCLQTWPEAAGKDSEIFTVNGILGESVTFPVNIQEPRQVKIIAWTSKTSV 60
Query: 297 AVVVPGNSGTT--ITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVT 470
A V PG+S T +TVTH+NYY+R++ G NYNL + +LRMED+G YKADI ++
Sbjct: 61 AYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAGDYKADINTQA--DPY 118
Query: 471 TITKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGREGNVL 650
T TK Y+LQ+YRRLGKPKIT+SLM S+N TCNVTLTCSVEKEEKNVTY+WS LG EGNVL
Sbjct: 119 TTTKRYNLQIYRRLGKPKITQSLMASVNSTCNVTLTCSVEKEEKNVTYNWSPLGEEGNVL 178
Query: 651 QIFQTPDNQHLTYTCTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVFII 830
QIFQTP++Q LTYTCTA NPVSNNSDSISA+QLCADIA+G +T H GLLS LA+ + ++
Sbjct: 179 QIFQTPEDQELTYTCTAQNPVSNNSDSISARQLCADIAMGFRTHHTGLLSVLAMFFLLVL 238
Query: 831 IIPSVILCLMYKRGQGSYLK 890
I+ SV L ++KR QG+ L+
Sbjct: 239 ILSSVFLFRLFKRRQGASLQ 258
Score = 28.9 bits (63), Expect(2) = 6e-91
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = +2
Query: 1004 QGAPHQGGASEHDLFHSAV 1060
QGA QG ASEH LF SAV
Sbjct: 253 QGASLQGRASEHSLFRSAV 271
>ref|NP_001171811.1| SLAM family member 5 isoform 4 [Homo sapiens].
Length = 214
Score = 278 bits (710), Expect = 9e-75
Identities = 146/209 (69%), Positives = 168/209 (80%), Gaps = 1/209 (0%)
Frame = +3
Query: 507 RLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGREGNVLQIFQTPDNQHLT 686
RLGKPKIT+SLM S+N TCNVTLTCSVEKEEKNVTY+WS LG EGNVLQIFQTP++Q LT
Sbjct: 17 RLGKPKITQSLMASVNSTCNVTLTCSVEKEEKNVTYNWSPLGEEGNVLQIFQTPEDQELT 76
Query: 687 YTCTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVFIIIIPSVILCLMYK 866
YTCTA NPVSNNSDSISA+QLCADIA+G +T H GLLS LA+ + ++I+ SV L ++K
Sbjct: 77 YTCTAQNPVSNNSDSISARQLCADIAMGFRTHHTGLLSVLAMFFLLVLILSSVFLFRLFK 136
Query: 867 RGQGSYLKTFSKNPDADSKKTIYTYITAAKDAQTAEYRIYDEIPQSKVPPTKEEPVNTIY 1046
R Q DA SKKTIYTYI A+++ Q AE RIYDEI QSKV P+KEEPVNT+Y
Sbjct: 137 RRQ-----------DAASKKTIYTYIMASRNTQPAESRIYDEILQSKVLPSKEEPVNTVY 185
Query: 1047 SIVQYSDKTEK-STQDSKPSGTSSYEIVI 1130
S VQ++DK K STQDSKP GTSSYEIVI
Sbjct: 186 SEVQFADKMGKASTQDSKPPGTSSYEIVI 214
>ref|NP_001171643.1| SLAM family member 6 isoform 1 precursor [Homo sapiens].
Length = 332
Score = 138 bits (347), Expect = 1e-32
Identities = 101/313 (32%), Positives = 167/313 (53%), Gaps = 10/313 (3%)
Frame = +3
Query: 168 GAVGSNTDIT--IVNGILGESVTFSLSILKSEEVKSISWN-SKTSVAVVVPGNSGTT-IT 335
G V S + +T +VNGILGESVT L E+V I+W ++TS+A +VP + + I
Sbjct: 17 GNVVSQSSLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIH 76
Query: 336 VTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYDLQVYRRLG 515
VT+ RLN + +Y+L+L NL+MED+G Y+A I+ K+ K+++ Y L++ R+L
Sbjct: 77 VTNPKQGKRLNFTQ-SYSLQLSNLKMEDTGSYRAQISTKTSAKLSS----YTLRILRQLR 131
Query: 516 KPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGR----EGNVLQIFQTPDNQHL 683
++T N TC + LTCSVE + NV++ W LG + N+ + +
Sbjct: 132 NIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRISSEQ 191
Query: 684 TYTCTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGL--LSGLAVLSVFIIIIPSVILCL 857
YTC A N VSN S S+SAQ+LC D+ + L +SG+ ++ FII+ +L +
Sbjct: 192 DYTCIAENAVSNLSFSVSAQKLCEDVKIQYTDTKMILFMVSGICIVFGFIIL----LLLV 247
Query: 858 MYKRGQGSYLKTFSKNPDADSKKTIYTYITAAKDAQTAEYRIYDEIPQSKVPPTKEEPVN 1037
+ KR L T A+S + + Y++ + T + ++++ +E
Sbjct: 248 LRKRRDSLSLSTQRTQGPAESARNL-EYVSVSPTNNTVYASVTHSNRETEIWTPRENDTI 306
Query: 1038 TIYSIVQYSDKTE 1076
TIYS + +S +++
Sbjct: 307 TIYSTINHSKESK 319
>ref|NP_443163.1| SLAM family member 6 isoform 2 precursor [Homo sapiens].
Length = 331
Score = 134 bits (338), Expect = 1e-31
Identities = 100/313 (31%), Positives = 167/313 (53%), Gaps = 10/313 (3%)
Frame = +3
Query: 168 GAVGSNTDIT--IVNGILGESVTFSLSILKSEEVKSISWN-SKTSVAVVVPGNSGTT-IT 335
G V S + +T +VNGILGESVT L E+V I+W ++TS+A +VP + + I
Sbjct: 17 GNVVSQSSLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIH 76
Query: 336 VTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYDLQVYRRLG 515
VT+ RLN + +Y+L+L NL+MED+G Y+A I+ K+ K+++ Y L++ R+L
Sbjct: 77 VTNPKQGKRLNFTQ-SYSLQLSNLKMEDTGSYRAQISTKTSAKLSS----YTLRILRQLR 131
Query: 516 KPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGR----EGNVLQIFQTPDNQHL 683
++T N TC + LTCSVE + NV++ W LG + N+ + +
Sbjct: 132 NIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRISSEQ 191
Query: 684 TYTCTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGL--LSGLAVLSVFIIIIPSVILCL 857
YTC A N VSN S S+SAQ+LC D+ + L +SG+ ++ FII+ +L +
Sbjct: 192 DYTCIAENAVSNLSFSVSAQKLCEDVKIQYTDTKMILFMVSGICIVFGFIIL----LLLV 247
Query: 858 MYKRGQGSYLKTFSKNPDADSKKTIYTYITAAKDAQTAEYRIYDEIPQSKVPPTKEEPVN 1037
+ KR L T + +S + + Y++ + T + ++++ +E
Sbjct: 248 LRKRRDSLSLST-QRTQGPESARNL-EYVSVSPTNNTVYASVTHSNRETEIWTPRENDTI 305
Query: 1038 TIYSIVQYSDKTE 1076
TIYS + +S +++
Sbjct: 306 TIYSTINHSKESK 318
>ref|NP_067004.3| SLAM family member 7 [Homo sapiens].
Length = 335
Score = 132 bits (331), Expect = 8e-31
Identities = 101/327 (30%), Positives = 157/327 (48%), Gaps = 7/327 (2%)
Frame = +3
Query: 117 MAHRHTWILLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKTSV 296
MA T + L+ + +L ++ + + G +G +VTF L K ++V SI W T+
Sbjct: 1 MAGSPTCLTLIYILWQLTGSAASGPVKELVGSVGGAVTFPLKS-KVKQVDSIVWTFNTTP 59
Query: 297 AVVVPGNSGTTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTI 476
V + GT I ++N +R++ Y+L+L L+ DSGIY I SL++ +T
Sbjct: 60 LVTIQPEGGTIIVTQNRNR-ERVDFPDGGYSLKLSKLKKNDSGIYYVGIYSSSLQQPST- 117
Query: 477 TKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGR------E 638
+ Y L VY L KPK+T L ++ NGTC LTC +E E++V Y+W LG+
Sbjct: 118 -QEYVLHVYEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKALGQAANESHN 176
Query: 639 GNVLQIFQTPDNQHLTYTCTAWNPVSNN-SDSISAQQLCADIAVGLQTRHPGLLSGLAVL 815
G++L I +T+ C A NPVS N S I A++LC A + LL L V
Sbjct: 177 GSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCEGAADDPDSSMV-LLCLLLVP 235
Query: 816 SVFIIIIPSVILCLMYKRGQGSYLKTFSKNPDADSKKTIYTYITAAKDAQTAEYRIYDEI 995
+ + + + L + + Q Y++ + K+ T + E YD I
Sbjct: 236 LLLSLFVLGLFLWFLKRERQEEYIE--------EKKRVDICRETPNICPHSGENTEYDTI 287
Query: 996 PQSKVPPTKEEPVNTIYSIVQYSDKTE 1076
P + KE+P NT+YS V+ K E
Sbjct: 288 PHTNRTILKEDPANTVYSTVEIPKKME 314
>ref|NP_254273.2| SLAM family member 9 isoform 1 [Homo sapiens].
Length = 289
Score = 128 bits (321), Expect = 1e-29
Identities = 92/274 (33%), Positives = 147/274 (53%), Gaps = 17/274 (6%)
Frame = +3
Query: 135 WILLLCL-----QTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKTSVA 299
W+LLL L Q RL + ++ V L ES++ L I EEV++I W+S S+A
Sbjct: 6 WLLLLLLLQEGSQRRLWRWCGSEEVVAV---LQESISLPLEIPPDEEVENIIWSSHKSLA 62
Query: 300 VVVPGNSG--TTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTT 473
VVPG G TI VT+ +Y +++ +Y+L + NL EDSG+Y+A + +++ +++T
Sbjct: 63 TVVPGKEGHPATIMVTNPHYQGQVSFLDPSYSLHISNLSWEDSGLYQAQVNLRT-SQIST 121
Query: 474 ITKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLG------R 635
+ + Y++ VYR L +P+IT + +S G C+++L CSVEK ++TYSW G
Sbjct: 122 MQQ-YNICVYRWLSEPQITVNFESSGEGACSMSLVCSVEKAGMDMTYSWLSRGDSTYTFH 180
Query: 636 EGNVLQIFQTPDNQHLTYTCTAWNPVSN-NSDSISAQQLCADIAVGLQ---TRHPGLLSG 803
EG VL P + L+YTC A NP+SN +S I AD + T L G
Sbjct: 181 EGPVLSTSWRPGDSALSYTCRANNPISNVSSCPIPDGPFYADPNYASEKPSTAFCLLAKG 240
Query: 804 LAVLSVFIIIIPSVILCLMYKRGQGSYLKTFSKN 905
L + + +I+ + + + KR + +K +N
Sbjct: 241 LLIFLLLVILAMGLWVIRVQKRHKMPRMKKLMRN 274
>ref|NP_002339.2| T-lymphocyte surface antigen Ly-9 isoform a [Homo sapiens].
Length = 655
Score = 122 bits (307), Expect = 5e-28
Identities = 78/214 (36%), Positives = 123/214 (57%), Gaps = 9/214 (4%)
Frame = +3
Query: 144 LLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISW-NSKTSVAVVVPGNS 320
LL L L A G ++ T+V+GILG SVT L+I E++++ W K ++A P +
Sbjct: 36 LLFLLMGLRASGKDSAPTVVSGILGGSVTLPLNISVDTEIENVIWIGPKNALAFARPKEN 95
Query: 321 GTTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYDLQV 500
+T+ ++Y RL+++ +Y+L + NL + D+G YKA I ++ E T + + L V
Sbjct: 96 ---VTIMVKSYLGRLDITKWSYSLCISNLTLNDAGSYKAQINQRNFE--VTTEEEFTLFV 150
Query: 501 YRRLGKPKIT-RSLMTSMNGTCNVTLTCSVEKEEKNVTYSWS----HLGRE--GNVLQIF 659
Y +L +P++T +S+ S N +CN+TL CSV+ EK+V YSW+ H G++L +
Sbjct: 151 YEQLQEPQVTMKSVKVSENFSCNITLMCSVKGAEKSVLYSWTPREPHASESNGGSILTVS 210
Query: 660 QTPDNQHLTYTCTAWNPVSNNSD-SISAQQLCAD 758
+TP + L Y CTA NPVS S + Q C D
Sbjct: 211 RTPCDPDLPYICTAQNPVSQRSSLPVHVGQFCTD 244
Score = 107 bits (266), Expect = 3e-23
Identities = 91/347 (26%), Positives = 157/347 (45%), Gaps = 30/347 (8%)
Frame = +3
Query: 177 GSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKTSVAVVVPGNSGTT--ITVTHQN 350
G T T+V G+LGE VT L++ + + + W TS+ + T + +
Sbjct: 250 GGTTGETVV-GVLGEPVTLPLALPACRDTEKVVWLFNTSIISKEREEAATADPLIKSRDP 308
Query: 351 YYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYDLQVYRRLGKPKIT 530
Y +R+ VS + +L++ L++ED+G Y A + ++ VT++T L +YRRL KPKIT
Sbjct: 309 YKNRVWVSSQDCSLKISQLKIEDAGPYHAYVCSEA-SSVTSMTHV-TLLIYRRLRKPKIT 366
Query: 531 RSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGREGNV------LQIFQTPDNQHLTYT 692
SL S +G C ++LTCSVE V Y+W+ L +E V L + H T
Sbjct: 367 WSLRHSEDGICRISLTCSVEDGGNTVMYTWTPLQKEAVVSQGESHLNVSWRSSENHPNLT 426
Query: 693 CTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVFIIIIPSVILCLMYKRG 872
CTA NPVS +S ++ +C+ R+ L GL L V ++ + C+ ++G
Sbjct: 427 CTASNPVSRSSHQFLSENICSG-----PERNTKLWIGL-FLMVCLLCVGIFSWCIWKRKG 480
Query: 873 Q-------GSYLKTFSKNPDADSKKTIYTYITAAKDAQTAEYRIYDEIP----------- 998
+ S + + P+ + T+Y+ ++ + R + P
Sbjct: 481 RCSVPAFCSSQAEAPADTPEPTAGHTLYSVLSQGYEKLDTPLRPARQQPTPTSDSSSDSN 540
Query: 999 ----QSKVPPTKEEPVNTIYSIVQYSDKTEKSTQDSKPSGTSSYEIV 1127
+ + P +P++ Y + + E + D P G + Y+ V
Sbjct: 541 LTTEEDEDRPEVHKPISGRYEVFDQVTQ-EGAGHDPAPEGQADYDPV 586
>ref|NP_001171644.1| SLAM family member 6 isoform 3 precursor [Homo sapiens].
Length = 282
Score = 105 bits (263), Expect = 6e-23
Identities = 76/255 (29%), Positives = 132/255 (51%), Gaps = 6/255 (2%)
Frame = +3
Query: 330 ITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYDLQVYRR 509
I VT+ RLN + +Y+L+L NL+MED+G Y+A I+ K+ K+++ Y L++ R+
Sbjct: 26 IHVTNPKQGKRLNFTQ-SYSLQLSNLKMEDTGSYRAQISTKTSAKLSS----YTLRILRQ 80
Query: 510 LGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGR----EGNVLQIFQTPDNQ 677
L ++T N TC + LTCSVE + NV++ W LG + N+ + +
Sbjct: 81 LRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRISS 140
Query: 678 HLTYTCTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGL--LSGLAVLSVFIIIIPSVIL 851
YTC A N VSN S S+SAQ+LC D+ + L +SG+ ++ FII+ +L
Sbjct: 141 EQDYTCIAENAVSNLSFSVSAQKLCEDVKIQYTDTKMILFMVSGICIVFGFIIL----LL 196
Query: 852 CLMYKRGQGSYLKTFSKNPDADSKKTIYTYITAAKDAQTAEYRIYDEIPQSKVPPTKEEP 1031
++ KR L T + +S + + Y++ + T + ++++ +E
Sbjct: 197 LVLRKRRDSLSLST-QRTQGPESARNL-EYVSVSPTNNTVYASVTHSNRETEIWTPREND 254
Query: 1032 VNTIYSIVQYSDKTE 1076
TIYS + +S +++
Sbjct: 255 TITIYSTINHSKESK 269
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,771,960
Number of extensions: 1243828
Number of successful extensions: 4440
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 4384
Number of HSP's successfully gapped: 19
Length of query: 397
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 292
Effective length of database: 14,835,944
Effective search space: 4332095648
Effective search space used: 4332095648
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003309
(1193 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038517.1| SLAM family member 5 precursor [Mus musculus]. 299 3e-81
Alignment gi|NP_083888.3| SLAM family member 9 precursor [Mus musculus]. 159 4e-39
Alignment gi|NP_032560.2| T-lymphocyte surface antigen Ly-9 precursor [Mu... 127 2e-29
Alignment gi|NP_109635.1| SLAM family member 6 [Mus musculus]. 119 5e-27
Alignment gi|NP_653122.2| SLAM family member 7 precursor [Mus musculus]. 117 1e-26
Alignment gi|NP_038758.2| signaling lymphocytic activation molecule precu... 77 2e-14
Alignment gi|NP_031675.1| CD48 antigen precursor [Mus musculus]. 71 2e-12
Alignment gi|XP_001003781.1| PREDICTED: natural killer cell receptor 2B4 ... 60 3e-09
Alignment gi|NP_001034275.1| carcinoembryonic antigen-related cell adhesi... 52 7e-07
Alignment gi|NP_001034274.1| carcinoembryonic antigen-related cell adhesi... 52 7e-07
>ref|NP_038517.1| SLAM family member 5 precursor [Mus musculus].
Length = 329
Score = 299 bits (766), Expect = 3e-81
Identities = 162/327 (49%), Positives = 217/327 (66%)
Frame = +3
Query: 117 MAHRHTWILLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKTSV 296
MA RH WI LCLQT A G + D ++NGILGESVTF L+I + +++ +I+W S++SV
Sbjct: 1 MAQRHLWIWFLCLQTWSEAAGKDADPVVMNGILGESVTFLLNIQEPKKIDNIAWTSQSSV 60
Query: 297 AVVVPGNSGTTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTI 476
A + PG + +T+T Y R+ + Y+L +R+LRMED+G YKADI ++ E TI
Sbjct: 61 AFIKPGVNKAEVTITQGTYKGRIEIIDQKYDLVIRDLRMEDAGTYKADINEENEE---TI 117
Query: 477 TKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGREGNVLQI 656
TK Y L +YRRL PKIT+SL++S+N TCN+TLTCSVEKEEK+VTYSWS G + NVLQI
Sbjct: 118 TKIYYLHIYRRLKTPKITQSLISSLNNTCNITLTCSVEKEEKDVTYSWSPFGEKSNVLQI 177
Query: 657 FQTPDNQHLTYTCTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVFIIII 836
+P +Q LTYTCTA NPVSN+SDS++ QQ C D RH L GLAVL + I+I
Sbjct: 178 VHSPMDQKLTYTCTAQNPVSNSSDSVTVQQPCTD-TPSFHPRHAVLPGGLAVLFLLILIP 236
Query: 837 PSVILCLMYKRGQGSYLKTFSKNPDADSKKTIYTYITAAKDAQTAEYRIYDEIPQSKVPP 1016
L +YKR + + D SKKT+Y + +++AQ E RIYDEIPQSK+
Sbjct: 237 MLAFLFRLYKRRRDRIV----LEADDVSKKTVYAVV--SRNAQPTESRIYDEIPQSKMLS 290
Query: 1017 TKEEPVNTIYSIVQYSDKTEKSTQDSK 1097
K++PV TIYS VQ S+K +++ +
Sbjct: 291 CKKDPVTTIYSSVQLSEKMKETNMKDR 317
>ref|NP_083888.3| SLAM family member 9 precursor [Mus musculus].
Length = 285
Score = 159 bits (402), Expect = 4e-39
Identities = 101/262 (38%), Positives = 145/262 (55%), Gaps = 12/262 (4%)
Frame = +3
Query: 135 WILLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKTSVAVVVPG 314
W LLL LQ G G + D V G+L ES+ SL I +EE+K I W + ++A+V PG
Sbjct: 6 WSLLLLLQEAKGFSGDDEDPEEVVGVLQESINLSLEIPSNEEIKHIDWLFQNNIAIVKPG 65
Query: 315 NSG--TTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCY 488
G I Y R+++S +Y+L + NL EDSG+Y A + +K+ E + ITK Y
Sbjct: 66 KKGQPAVIMAVDPRYRGRVSISESSYSLHISNLTWEDSGLYNAQVNLKTSE--SHITKSY 123
Query: 489 DLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSW------SHLGREGNVL 650
L+VYRRL KP IT + S G CN++LTCS+E+ +VTY W ++ EG+VL
Sbjct: 124 HLRVYRRLSKPHITVNSNISEEGVCNISLTCSIERAGMDVTYIWLSSQDSTNTSHEGSVL 183
Query: 651 QIFQTPDNQHLTYTCTAWNPVSN-NSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVFI 827
P ++ +YTC NP+SN +S IS CAD P +L L V S+F+
Sbjct: 184 STSWRPGDKAPSYTCRVSNPISNISSRRISVGSFCADPG---YLEKPSMLC-LLVKSLFL 239
Query: 828 IIIPSVI---LCLMYKRGQGSY 884
+++ +++ LCL R Q SY
Sbjct: 240 LLLLAILTVGLCLF--RAQKSY 259
>ref|NP_032560.2| T-lymphocyte surface antigen Ly-9 precursor [Mus musculus].
Length = 654
Score = 127 bits (318), Expect = 2e-29
Identities = 82/214 (38%), Positives = 115/214 (53%), Gaps = 8/214 (3%)
Frame = +3
Query: 135 WILLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKTSVAVVVPG 314
WI LL L LGA G T T+++G+LG SVTFSL+I K E++ I WN +V
Sbjct: 33 WIPLLFLLMGLGASGKETPPTVISGMLGGSVTFSLNISKDAEIEHIIWNCPPKALALVFY 92
Query: 315 NSGTTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYDL 494
IT+ + Y RL VS Y+L + NL DSG Y A I K++ + T K + L
Sbjct: 93 KK--DITILDKGYNGRLKVSEDGYSLYMSNLTKSDSGSYHAQINQKNV--ILTTNKEFTL 148
Query: 495 QVYRRLGKPK-ITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSW----SHLGR--EGNVLQ 653
+Y +L KP+ I S+ S +C TL C+V+ + +V YSW +HL + L+
Sbjct: 149 HIYEKLQKPQIIVESVTPSDTDSCTFTLICTVKGTKDSVQYSWTREDTHLNTYDGSHTLR 208
Query: 654 IFQTPDNQHLTYTCTAWNPVS-NNSDSISAQQLC 752
+ Q+ + L YTC AWNPVS N+S + Q C
Sbjct: 209 VSQSVCDPDLPYTCKAWNPVSQNSSQPVRIWQFC 242
Score = 97.8 bits (242), Expect = 1e-20
Identities = 65/193 (33%), Positives = 98/193 (50%), Gaps = 8/193 (4%)
Frame = +3
Query: 201 VNGILGESVTFSLSILKSEEVKSISWNSKTSVAVVVPGNSGTTITVTHQNYYD--RLNVS 374
V GILGE VT L + K++ W TSV + T + + R+ S
Sbjct: 256 VVGILGEPVTLPLEFRATRATKNVVWVFNTSVISQERRGAATADSRRKPKGSEERRVRTS 315
Query: 375 GLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYDLQVYRRLGKPKITRSLMTSMN 554
+ +L++ L+MED+G Y A + ++ + + + L VY+RL KP +T+S + MN
Sbjct: 316 DQDQSLKISQLKMEDAGPYHAYVCSEASRDPSV--RHFTLLVYKRLEKPSVTKSPVHMMN 373
Query: 555 GTCNVTLTCSVEKEEKNVTYSWSHLGREGNVLQ-----IFQTPDNQHL-TYTCTAWNPVS 716
G C V LTCSV+ NVTY+W L + + Q +HL +TCTA NPVS
Sbjct: 374 GICEVVLTCSVDGGGNNVTYTWMPLQNKAVMSQGKSHLNVSWESGEHLPNFTCTAHNPVS 433
Query: 717 NNSDSISAQQLCA 755
N+S S+ +C+
Sbjct: 434 NSSSQFSSGTICS 446
>ref|NP_109635.1| SLAM family member 6 [Mus musculus].
Length = 331
Score = 119 bits (298), Expect = 5e-27
Identities = 92/329 (27%), Positives = 153/329 (46%), Gaps = 10/329 (3%)
Frame = +3
Query: 126 RHTWI--LLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWN----SK 287
R W+ L+ CL + S++D ++NG+LGES L + + I WN +
Sbjct: 15 RMVWLFPLVFCLGSGSEVSQSSSDPQLMNGVLGESAVLPLKLPAGKIANIIIWNYEWEAS 74
Query: 288 TSVAVVVPGNSGTTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKV 467
A+V+ ++ + + + + RLN++ +Y+L++ NL M D+G Y A IT K E
Sbjct: 75 QVTALVINLSNPESPQIMNTDVKKRLNITQ-SYSLQISNLTMADTGSYTAQITTKDSE-- 131
Query: 468 TTITKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGR---E 638
IT Y L+V+ RLG + T + NGTC + L C ++ + + V+ W G
Sbjct: 132 -VITFKYILRVFERLGNLETTNYTLLLENGTCQIHLACVLKNQSQTVSVEWQATGNISLG 190
Query: 639 GNVLQIFQTPDNQ-HLTYTCTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGLLSGLAVL 815
G + IF P N TY C A N VSN S S+S Q LC + ++ ++++
Sbjct: 191 GPNVTIFWDPRNSGDQTYVCRAKNAVSNLSVSVSTQSLCKGVLTNPPWNAVWFMTTISII 250
Query: 816 SVFIIIIPSVILCLMYKRGQGSYLKTFSKNPDADSKKTIYTYITAAKDAQTAEYRIYDEI 995
S I+I + + +RG L S++P++ T ++ +
Sbjct: 251 SAVILIFVCWSIHVWKRRGS---LPLTSQHPESSQSTD-----GPGSPGNTVYAQVTRPM 302
Query: 996 PQSKVPPTKEEPVNTIYSIVQYSDKTEKS 1082
+ K+P + TIYSIV +S + E S
Sbjct: 303 QEMKIPKPIKNDSMTIYSIVNHSREAEYS 331
>ref|NP_653122.2| SLAM family member 7 precursor [Mus musculus].
Length = 333
Score = 117 bits (294), Expect = 1e-26
Identities = 94/323 (29%), Positives = 155/323 (47%), Gaps = 9/323 (2%)
Frame = +3
Query: 117 MAHRHTWILLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKTSV 296
MA T+I+ + +L ++ + V G L SVTF+L+I + + V + W T
Sbjct: 1 MARFSTYIIFTSVLCQLTVTAASGTLKKVAGALDGSVTFTLNITEIK-VDYVVWTFNTFF 59
Query: 297 AVVVPGNSGTTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTI 476
+V + T+ + +R+ Y+++L L+ DSG Y+A+I S + ++
Sbjct: 60 LAMVKKDGVTS----QSSNKERIVFPDGLYSMKLSQLKKNDSGAYRAEIYSTSSQ--ASL 113
Query: 477 TKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGR------E 638
+ Y L VY+ L +PK+T ++ NGTC + LTCS +++ +NVTYSW +G+ +
Sbjct: 114 IQEYVLHVYKHLSRPKVTIDRQSNKNGTCVINLTCSTDQDGENVTYSWKAVGQGDNQFHD 173
Query: 639 GNVLQIFQTPDNQHLTYTCTAWNPVSNN-SDSISAQQLCADIAVGLQTRHPGLLSGLAVL 815
G L I + TC A NPVSN+ S + Q+LC D A L T G+L L
Sbjct: 174 GATLSIAWRSGEKDQALTCMARNPVSNSFSTPVFPQKLCEDAATDL-TSLRGILYILCFS 232
Query: 816 SVFII--IIPSVILCLMYKRGQGSYLKTFSKNPDADSKKTIYTYITAAKDAQTAEYRIYD 989
+V I+ ++ ++ + K+G+G + D K+ E YD
Sbjct: 233 AVLILFAVLLTIFHTMWIKKGKGC---------EEDKKRVDRHQEMPDLCPHLEENADYD 283
Query: 990 EIPQSKVPPTKEEPVNTIYSIVQ 1058
IP ++ +E+ NT YS VQ
Sbjct: 284 TIPYTEKRRPEEDAPNTFYSTVQ 306
>ref|NP_038758.2| signaling lymphocytic activation molecule precursor [Mus musculus].
Length = 343
Score = 77.4 bits (189), Expect = 2e-14
Identities = 84/356 (23%), Positives = 157/356 (44%), Gaps = 23/356 (6%)
Frame = +3
Query: 105 PWKKMAHRHTWILLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNS 284
P ++ R L L + G G D ++ LG+ L+ +E + S N
Sbjct: 3 PKGSLSWRILLFLSLAFELSYGTGGGVMDCPVILQKLGQDTWLPLT---NEHQINKSVNK 59
Query: 285 KTSVAVVVPGNSGT-------TITVTHQNYYDRL----NVSGLNYNLELRNLRMEDSGIY 431
+ V + + G+ + ++ +Y D L + N +L++ R E G Y
Sbjct: 60 SVRILVTMATSPGSKSNKKIVSFDLSKGSYPDHLEDGYHFQSKNLSLKILGNRRESEGWY 119
Query: 432 KADITVKSLEKVTTITKCYDLQVYRRLGKP--KITRSLMTSMNGTCNVTLTCSVEKEEKN 605
+ E V+ C L++Y ++ P K+ + NGTC++ L C+V+K + +
Sbjct: 120 LVSVE----ENVSVQQFCKQLKLYEQVSPPEIKVLNKTQENENGTCSLLLACTVKKGD-H 174
Query: 606 VTYSWS-----HL---GREGNVLQIFQTPDNQHLTYTCTAWNPVSNNSD--SISAQQLCA 755
VTYSWS HL ++L I + +Q Y CTA NPVS+ S ++S+Q
Sbjct: 175 VTYSWSDEAGTHLLSRANRSHLLHITLSNQHQDSIYNCTASNPVSSISRTFNLSSQACKQ 234
Query: 756 DIAVGLQTRHPGLLSGLAVLSVFIIIIPSVILCLMYKRGQGSYLKTFSKNPDADSKKTIY 935
+ + L L V+ +FI++ ++I +M ++G+ ++ + P + TIY
Sbjct: 235 ESSSESSPWMQYTLVPLGVVIIFILVFTAII--MMKRQGKSNHCQP----PVEEKSLTIY 288
Query: 936 TYITAAKDAQTAEYRIYDEIPQSKVPPTKEEPVNTIYSIVQYSDKTEKSTQDSKPS 1103
+ + + E +++D + T ++P TIY V ++ +S Q+ P+
Sbjct: 289 AQV---QKSGPQEKKLHDAL-------TDQDPCTTIY--VAATEPAPESVQEPNPT 332
>ref|NP_031675.1| CD48 antigen precursor [Mus musculus].
Length = 240
Score = 70.9 bits (172), Expect = 2e-12
Identities = 66/246 (26%), Positives = 108/246 (43%), Gaps = 7/246 (2%)
Frame = +3
Query: 135 WILLL-CLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKTSVAVVVP 311
W L+L L LG I +N G +VT + K I+W T ++
Sbjct: 8 WCLVLELLLLPLGTGFQGHSIPDINATTGSNVTLKIHKDPLGPYKRITW-LHTKNQKILE 66
Query: 312 GNSGTTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYD 491
N +T T+ + R+ + N L + N+R ED G Y + ++ E IT
Sbjct: 67 YNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKGTYYMRV-LRETENELKIT---- 121
Query: 492 LQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLG------REGNVLQ 653
L+V+ + KP I + + +C++ L+C V+ +++V Y+W G VL
Sbjct: 122 LEVFDPVPKPSIEINKTEASTDSCHLRLSCEVK--DQHVDYTWYESSGPFPKKSPGYVLD 179
Query: 654 IFQTPDNQHLTYTCTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVFIII 833
+ TP N+ YTC NPVS+ +D++ C D+A R G+ L V +I
Sbjct: 180 LIVTPQNKSTFYTCQVSNPVSSKNDTVYFTLPC-DLA-----RSSGVCWTATWLVVTTLI 233
Query: 834 IPSVIL 851
I ++L
Sbjct: 234 IHRILL 239
>ref|XP_001003781.1| PREDICTED: natural killer cell receptor 2B4 isoform 2 [Mus musculus].
Length = 398
Score = 60.5 bits (145), Expect = 3e-09
Identities = 81/377 (21%), Positives = 150/377 (39%), Gaps = 59/377 (15%)
Frame = +3
Query: 201 VNGILGESVTFSLSILKSEEVKSISWNSK-------TSVAVVVPGNSGTTITVTHQNYYD 359
V G+ G+ V S +++++V S+ W K T + + N+ TV + Y
Sbjct: 29 VVGVSGKPVRLRPSNIQTKDV-SVQWKKKVQGSHTNTEILISCNNNASRCSTVVSSDIY- 86
Query: 360 RLNVSGLNYN---LELRNLRMEDSGIYKADITVKSLEKVTTITKCYDLQVYRRLGKPKIT 530
G +Y L +++ +++DSG Y ++T ++ T TK + + + + P +
Sbjct: 87 -----GFDYGDFALSIKSAQLQDSGHYLLELTYRN---GTVCTKNFQILILDHVETPHLK 138
Query: 531 RSLMTSMNGTCNVTLTCSVEKEEKNVTYSW----SHLGREGNVLQIFQTPDNQHL-TYTC 695
NGTC + L+CSV K++ NV+Y+ + + + N D L TYTC
Sbjct: 139 AQWNAWTNGTCQLFLSCSVPKDD-NVSYALYRGSTLISNQRNSTHWENQTDASSLHTYTC 197
Query: 696 TAWNPVSNNSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVFIIIIPSVILCLMYKRGQ 875
N S + +++ C + + + G+ ++ + + + I+C +
Sbjct: 198 NVSNRASWANHTLNFTHGCQSVHLNFRFLPFGV-----IIVILVTLFLGAIICFCVWTKK 252
Query: 876 GSYLKTFSKNPDADSKKTIYTYI---TAAKDAQTAE-----------------------Y 977
L+ K P TIY Y+ A++D Q
Sbjct: 253 RKQLQFSPKEP-----LTIYEYVKDSRASRDQQGCSRASGSPSAVQEDGRGQRELDRRVS 307
Query: 978 RIYDEIPQSKVP----------------PTKEEPVNTIYSIVQYSDK--TEKSTQDSKPS 1103
+ +++PQ P T +E T+YS+VQ S K ++K Q+S S
Sbjct: 308 EVLEQLPQQNSPGDRGTMYSMIQCKPSDSTSQEKC-TVYSVVQPSRKSGSKKRNQNSSLS 366
Query: 1104 GTSSYEIVIXASRQHSP 1154
T E+ + H+P
Sbjct: 367 CTVYEEVGNPWLKAHNP 383
>ref|NP_001034275.1| carcinoembryonic antigen-related cell adhesion molecule 1 isoform 2
[Mus musculus].
Length = 458
Score = 52.4 bits (124), Expect = 7e-07
Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 13/161 (8%)
Frame = +3
Query: 294 VAVVVPGNSGTTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTT 473
+A VP ++ + T Q Y R + N +L + + M+D G+Y D+T ++ +
Sbjct: 79 IARFVPNSN---MNFTGQAYSGR-EIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQA 134
Query: 474 ITKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGR------ 635
+ + V+ L KP IT + + G +V+LTC + N+ Y WS G
Sbjct: 135 TVRFH---VHPILLKPNITSNNSNPVEGDDSVSLTCDSYTDPDNINYLWSRNGESLSEGD 191
Query: 636 -----EGN-VLQIFQTPDNQHLTYTCTAWNPVS-NNSDSIS 737
EGN L + N Y C NPVS N SD S
Sbjct: 192 RLKLSEGNRTLTLLNVTRNDTGPYVCETRNPVSVNRSDPFS 232
>ref|NP_001034274.1| carcinoembryonic antigen-related cell adhesion molecule 1 isoform 1
[Mus musculus].
Length = 521
Score = 52.4 bits (124), Expect = 7e-07
Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 13/161 (8%)
Frame = +3
Query: 294 VAVVVPGNSGTTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTT 473
+A VP ++ + T Q Y R + N +L + + M+D G+Y D+T ++ +
Sbjct: 79 IARFVPNSN---MNFTGQAYSGR-EIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQA 134
Query: 474 ITKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGR------ 635
+ + V+ L KP IT + + G +V+LTC + N+ Y WS G
Sbjct: 135 TVRFH---VHPILLKPNITSNNSNPVEGDDSVSLTCDSYTDPDNINYLWSRNGESLSEGD 191
Query: 636 -----EGN-VLQIFQTPDNQHLTYTCTAWNPVS-NNSDSIS 737
EGN L + N Y C NPVS N SD S
Sbjct: 192 RLKLSEGNRTLTLLNVTRNDTGPYVCETRNPVSVNRSDPFS 232
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,975,002
Number of extensions: 1063944
Number of successful extensions: 3815
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3763
Number of HSP's successfully gapped: 12
Length of query: 397
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 294
Effective length of database: 12,523,851
Effective search space: 3682012194
Effective search space used: 3682012194
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003309
(1193 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928499.3| PREDICTED: SLAM family member 5 [Sus scrofa]. 627 e-180
Alignment gi|XP_003355146.1| PREDICTED: SLAM family member 5-like isoform... 483 e-136
Alignment gi|XP_003355145.1| PREDICTED: SLAM family member 5-like isoform... 381 e-106
Alignment gi|XP_001925652.1| PREDICTED: SLAM family member 7-like [Sus sc... 140 1e-33
Alignment gi|XP_001925632.2| PREDICTED: t-lymphocyte surface antigen Ly-9... 123 2e-28
Alignment gi|XP_003125709.1| PREDICTED: t-lymphocyte surface antigen Ly-9... 122 4e-28
Alignment gi|XP_001928602.1| PREDICTED: SLAM family member 6 [Sus scrofa]. 121 7e-28
Alignment gi|XP_001928448.2| PREDICTED: t-lymphocyte surface antigen Ly-9... 120 2e-27
Alignment gi|NP_001230749.1| signaling lymphocytic activation molecule fa... 82 6e-16
Alignment gi|XP_001928360.1| PREDICTED: natural killer cell receptor 2B4-... 74 2e-13
>ref|XP_001928499.3| PREDICTED: SLAM family member 5 [Sus scrofa].
Length = 358
Score = 627 bits (1617), Expect = e-180
Identities = 316/324 (97%), Positives = 317/324 (97%), Gaps = 6/324 (1%)
Frame = +3
Query: 117 MAHRHTWILLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKTSV 296
MAH HTWILLLCLQTRLGAVGSNTDIT+VNGILGESVTFSLSILKSEEVKSISWNSKTSV
Sbjct: 1 MAHHHTWILLLCLQTRLGAVGSNTDITMVNGILGESVTFSLSILKSEEVKSISWNSKTSV 60
Query: 297 AVVVPGNSGTTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTI 476
AVVVPGNSGTTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTI
Sbjct: 61 AVVVPGNSGTTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTI 120
Query: 477 TKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGREGNVLQI 656
TKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGREGNVLQI
Sbjct: 121 TKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGREGNVLQI 180
Query: 657 FQTPDNQHLTYTCTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVFIIII 836
FQTPDNQHLTYTCTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVFIIII
Sbjct: 181 FQTPDNQHLTYTCTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVFIIII 240
Query: 837 PSVILCLMYKRGQ------GSYLKTFSKNPDADSKKTIYTYITAAKDAQTAEYRIYDEIP 998
PSVILCLMYKRGQ GSYLKTFSKNPDADSKKTIYTYITAAKDAQTAEYRIYDEIP
Sbjct: 241 PSVILCLMYKRGQGRIFSEGSYLKTFSKNPDADSKKTIYTYITAAKDAQTAEYRIYDEIP 300
Query: 999 QSKVPPTKEEPVNTIYSIVQYSDK 1070
QSKVPPTKEEPVNTIYSIVQYSDK
Sbjct: 301 QSKVPPTKEEPVNTIYSIVQYSDK 324
>ref|XP_003355146.1| PREDICTED: SLAM family member 5-like isoform 2 [Sus scrofa].
Length = 240
Score = 483 bits (1242), Expect = e-136
Identities = 240/240 (100%), Positives = 240/240 (100%)
Frame = +3
Query: 411 MEDSGIYKADITVKSLEKVTTITKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVE 590
MEDSGIYKADITVKSLEKVTTITKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVE
Sbjct: 1 MEDSGIYKADITVKSLEKVTTITKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVE 60
Query: 591 KEEKNVTYSWSHLGREGNVLQIFQTPDNQHLTYTCTAWNPVSNNSDSISAQQLCADIAVG 770
KEEKNVTYSWSHLGREGNVLQIFQTPDNQHLTYTCTAWNPVSNNSDSISAQQLCADIAVG
Sbjct: 61 KEEKNVTYSWSHLGREGNVLQIFQTPDNQHLTYTCTAWNPVSNNSDSISAQQLCADIAVG 120
Query: 771 LQTRHPGLLSGLAVLSVFIIIIPSVILCLMYKRGQGSYLKTFSKNPDADSKKTIYTYITA 950
LQTRHPGLLSGLAVLSVFIIIIPSVILCLMYKRGQGSYLKTFSKNPDADSKKTIYTYITA
Sbjct: 121 LQTRHPGLLSGLAVLSVFIIIIPSVILCLMYKRGQGSYLKTFSKNPDADSKKTIYTYITA 180
Query: 951 AKDAQTAEYRIYDEIPQSKVPPTKEEPVNTIYSIVQYSDKTEKSTQDSKPSGTSSYEIVI 1130
AKDAQTAEYRIYDEIPQSKVPPTKEEPVNTIYSIVQYSDKTEKSTQDSKPSGTSSYEIVI
Sbjct: 181 AKDAQTAEYRIYDEIPQSKVPPTKEEPVNTIYSIVQYSDKTEKSTQDSKPSGTSSYEIVI 240
>ref|XP_003355145.1| PREDICTED: SLAM family member 5-like isoform 1 [Sus scrofa].
Length = 204
Score = 381 bits (978), Expect = e-106
Identities = 195/209 (93%), Positives = 197/209 (94%), Gaps = 1/209 (0%)
Frame = +3
Query: 507 RLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGREGNVLQIFQTPDNQHLT 686
RLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGREGNVLQIFQTPDNQHLT
Sbjct: 7 RLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGREGNVLQIFQTPDNQHLT 66
Query: 687 YTCTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVFIIIIPSVILCLMYK 866
YTCTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVFIIIIPSVILCLMYK
Sbjct: 67 YTCTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVFIIIIPSVILCLMYK 126
Query: 867 RGQGSYLKTFSKNPDADSKKTIYTYITAAKDAQTAEYRIYDEIPQSKVPPTKEEPVNTIY 1046
RGQ DADSKKTIYTYITAAKDAQTAEYRIYDEIPQSKVPPTKEEPVNTIY
Sbjct: 127 RGQ-----------DADSKKTIYTYITAAKDAQTAEYRIYDEIPQSKVPPTKEEPVNTIY 175
Query: 1047 SIVQYSDKT-EKSTQDSKPSGTSSYEIVI 1130
SIVQYSDK+ +KSTQDSKPSGTSSYEIVI
Sbjct: 176 SIVQYSDKSGKKSTQDSKPSGTSSYEIVI 204
>ref|XP_001925652.1| PREDICTED: SLAM family member 7-like [Sus scrofa].
Length = 337
Score = 140 bits (354), Expect = 1e-33
Identities = 102/325 (31%), Positives = 159/325 (48%), Gaps = 11/325 (3%)
Frame = +3
Query: 138 ILLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKTSVAVVVP-- 311
+ LLC T A G + G +G SVTF L+ L + + SI W T+ V +
Sbjct: 10 LFLLCQLTGPAACGVLKKLV---GAVGGSVTFPLN-LSANMIDSIIWVFNTTTFVTIQPK 65
Query: 312 -GNSGTTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCY 488
+ I VT Q +R++ +Y+L+L L+ DSG Y+ +I +L+ +++ Y
Sbjct: 66 MADKKALIIVTQQRNKERVDFPNESYSLKLSKLKKNDSGAYRVEIYSSTLQN--PLSQEY 123
Query: 489 DLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGRE------GNVL 650
+L+VY L KPK+T L + NGTC LTCS E+ E++VTYSW LG+ G++L
Sbjct: 124 ELRVYEYLSKPKVTVGLQNNNNGTCVTNLTCSTEEGEEDVTYSWISLGQANNESYGGSIL 183
Query: 651 QIFQTPDNQHLTYTCTAWNPVSNNSDS-ISAQQLCADIAVGLQTRHPGLLSGLAVLSVFI 827
I + + +T+ C A NP+S+NS + I A +LC G GLA +F
Sbjct: 184 PISLRREKRDMTFICLARNPISSNSSNPIFAWKLC-----------KGTTGGLATSGIFS 232
Query: 828 IIIPSVILCLMYKRGQGSYLKTFSKNPDADSKKTIYTYITAAK-DAQTAEYRIYDEIPQS 1004
I++ ++LC + ++ + + K + T+ + E YD IP
Sbjct: 233 ILLSFILLCFLALMLIILIIRRERRKASIEEKGGVGTHPEILSCSPPSGETLEYDTIPHL 292
Query: 1005 KVPPTKEEPVNTIYSIVQYSDKTEK 1079
K +E +NT+YS VQ K EK
Sbjct: 293 KNTIPEENSLNTLYSTVQIPPKVEK 317
>ref|XP_001925632.2| PREDICTED: t-lymphocyte surface antigen Ly-9 isoform 1 [Sus scrofa].
Length = 645
Score = 123 bits (309), Expect = 2e-28
Identities = 87/263 (33%), Positives = 134/263 (50%), Gaps = 14/263 (5%)
Frame = +3
Query: 201 VNGILGESVTFSLSILKSEEVKSISWNSKTSVAVVVPGNSGTTITVTH--QNYYDRLNVS 374
V GILGES+T SL++ S+ ++++ W TS+ G + T +T + + L VS
Sbjct: 255 VMGILGESITLSLALQDSQHIENVVWMFNTSIISKEQGEAATANQLTEFKDPHKNTLWVS 314
Query: 375 GLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYDLQVYRRLGKPKITRSLMTSMN 554
+Y+L++ LRMED+G Y A + + ITK ++L VY RL KPK+T SL + +
Sbjct: 315 NQDYSLKISQLRMEDAGPYHAYVCSNTR---VAITKHFNLLVYGRLKKPKVTWSLRHTKD 371
Query: 555 GTCNVTLTCSVEKEEKNVTYSWSHL------GREGNVLQIFQTPDNQHLTYTCTAWNPVS 716
G C V LTCSVE NVTY W+ L + G L + +H +TCTA NPVS
Sbjct: 372 GICRVNLTCSVEDSGHNVTYRWTPLQKGAVRSQGGPHLSVSWRSGEKHPNFTCTASNPVS 431
Query: 717 NNSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVFIIIIPSVILCLMYKRGQGSYLKTF 896
NN S Q L +I G + R L L+++ ++ CL K+ + + +
Sbjct: 432 NN----SWQFLSGNICPGPERRSTKLWVWLSLIIFTLLFFGISGWCLWKKKRCSAPVSSS 487
Query: 897 SK------NPDADSKKTIYTYIT 947
S+ P+ + +YT ++
Sbjct: 488 SQEEAPADTPEPTAHHALYTMLS 510
Score = 113 bits (283), Expect = 2e-25
Identities = 77/215 (35%), Positives = 119/215 (55%), Gaps = 9/215 (4%)
Frame = +3
Query: 135 WILLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNS-KTSVAVVVP 311
WI LL L LGA S++ T+V G+LG SV L+I E++ I+WN + ++A+V P
Sbjct: 33 WIPLLFLLMGLGA--SHSTPTVVRGLLGGSVILPLNISVDMEIEHIAWNDPQNALALVTP 90
Query: 312 GNSGTTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYD 491
+ I + ++Y R+N+ N +L + L +D+G YKA I K+ E TI + +
Sbjct: 91 RSD---IIIMDRSYQGRINIFAQNNSLSINKLTWKDAGSYKAQINQKNSE--VTINEEFF 145
Query: 492 LQVYRRLGKPKIT-RSLMTSMNGTCNVTLTCSVEKEEKNVTYSW------SHLGREGNVL 650
L +Y +L +P++T +S+ S N +C+ TL CSVE ++V Y W + +G+ L
Sbjct: 146 LHIYEQLQEPQVTMKSVNMSENASCDFTLLCSVEGTGEDVQYHWTLRDPRAVKSLDGSTL 205
Query: 651 QIFQTPDNQHLTYTCTAWNPVSNNSD-SISAQQLC 752
I P + L Y CTA NPVS +S + A Q C
Sbjct: 206 TISWLPCDPDLPYICTAKNPVSQSSSRPVYAWQFC 240
>ref|XP_003125709.1| PREDICTED: t-lymphocyte surface antigen Ly-9 isoform 2 [Sus
scrofa].
Length = 631
Score = 122 bits (306), Expect = 4e-28
Identities = 83/231 (35%), Positives = 121/231 (52%), Gaps = 8/231 (3%)
Frame = +3
Query: 201 VNGILGESVTFSLSILKSEEVKSISWNSKTSVAVVVPGNSGTTITVTH--QNYYDRLNVS 374
V GILGES+T SL++ S+ ++++ W TS+ G + T +T + + L VS
Sbjct: 255 VMGILGESITLSLALQDSQHIENVVWMFNTSIISKEQGEAATANQLTEFKDPHKNTLWVS 314
Query: 375 GLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYDLQVYRRLGKPKITRSLMTSMN 554
+Y+L++ LRMED+G Y A + + ITK ++L VY RL KPK+T SL + +
Sbjct: 315 NQDYSLKISQLRMEDAGPYHAYVCSNTR---VAITKHFNLLVYGRLKKPKVTWSLRHTKD 371
Query: 555 GTCNVTLTCSVEKEEKNVTYSWSHL------GREGNVLQIFQTPDNQHLTYTCTAWNPVS 716
G C V LTCSVE NVTY W+ L + G L + +H +TCTA NPVS
Sbjct: 372 GICRVNLTCSVEDSGHNVTYRWTPLQKGAVRSQGGPHLSVSWRSGEKHPNFTCTASNPVS 431
Query: 717 NNSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVFIIIIPSVILCLMYKR 869
NN S Q L +I G + R L L+++ ++ CL K+
Sbjct: 432 NN----SWQFLSGNICPGPERRSTKLWVWLSLIIFTLLFFGISGWCLWKKK 478
Score = 113 bits (283), Expect = 2e-25
Identities = 77/215 (35%), Positives = 119/215 (55%), Gaps = 9/215 (4%)
Frame = +3
Query: 135 WILLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNS-KTSVAVVVP 311
WI LL L LGA S++ T+V G+LG SV L+I E++ I+WN + ++A+V P
Sbjct: 33 WIPLLFLLMGLGA--SHSTPTVVRGLLGGSVILPLNISVDMEIEHIAWNDPQNALALVTP 90
Query: 312 GNSGTTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYD 491
+ I + ++Y R+N+ N +L + L +D+G YKA I K+ E TI + +
Sbjct: 91 RSD---IIIMDRSYQGRINIFAQNNSLSINKLTWKDAGSYKAQINQKNSE--VTINEEFF 145
Query: 492 LQVYRRLGKPKIT-RSLMTSMNGTCNVTLTCSVEKEEKNVTYSW------SHLGREGNVL 650
L +Y +L +P++T +S+ S N +C+ TL CSVE ++V Y W + +G+ L
Sbjct: 146 LHIYEQLQEPQVTMKSVNMSENASCDFTLLCSVEGTGEDVQYHWTLRDPRAVKSLDGSTL 205
Query: 651 QIFQTPDNQHLTYTCTAWNPVSNNSD-SISAQQLC 752
I P + L Y CTA NPVS +S + A Q C
Sbjct: 206 TISWLPCDPDLPYICTAKNPVSQSSSRPVYAWQFC 240
>ref|XP_001928602.1| PREDICTED: SLAM family member 6 [Sus scrofa].
Length = 321
Score = 121 bits (304), Expect = 7e-28
Identities = 102/331 (30%), Positives = 150/331 (45%), Gaps = 23/331 (6%)
Frame = +3
Query: 141 LLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISW-NSKTSVAVVVPGN 317
L+ CL +++ IVNG LGESVT L + E++ SI+W + S+ + P
Sbjct: 10 LVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGKSIIFIRPNK 69
Query: 318 SGTT-ITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYDL 494
+ + I VT +RLNV+ +Y+L+L NL M D+G Y A IT S+ + Y L
Sbjct: 70 AQSPLIHVTDPKQSNRLNVTK-SYSLQLSNLTMADTGSYTAQITTTSV-----VFYSYYL 123
Query: 495 QVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSW----SHLGREGNVLQIFQ 662
+++RRLG ++ S N TC + LTCSVE NV++SW S L E N+ +
Sbjct: 124 RIFRRLGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEANLTVSWD 183
Query: 663 TPDNQHLTYTCTAWNPVSNNSDSISAQQLCADIA----VGLQTRHPGLLSGLAVLSVFII 830
+ + TY C A NPVSN S S+S Q LC + V L TR + ++ I
Sbjct: 184 PKNFRDETYMCIAENPVSNASSSVSVQSLCKGVINAKNVHLDTR------WIIMVVPLIC 237
Query: 831 IIPSVILCLMYKR-------------GQGSYLKTFSKNPDADSKKTIYTYITAAKDAQTA 971
I+ LC+ K+ G G+ + S T+Y +T A
Sbjct: 238 IVIFACLCVRRKKLADVFHFPAQQTQGAGAETVRNLEYASFSSGNTVYAQVTHANQ---- 293
Query: 972 EYRIYDEIPQSKVPPTKEEPVNTIYSIVQYS 1064
+ + P K TIY+ V S
Sbjct: 294 --------ERGTLTPLKNNDSTTIYTEVHQS 316
>ref|XP_001928448.2| PREDICTED: t-lymphocyte surface antigen Ly-9 isoform 2 [Sus
scrofa].
Length = 453
Score = 120 bits (300), Expect = 2e-27
Identities = 76/204 (37%), Positives = 113/204 (55%), Gaps = 8/204 (3%)
Frame = +3
Query: 168 GAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKTSVAVVVPGNSGTTITV--T 341
G +G +T IV G LG+S T L + +EV+ ++W+S+ VA + PG +G I V T
Sbjct: 227 GILGEDTMGEIVIGTLGKSATLPLEVPVGQEVEKVTWSSRGLVATLQPGRAGKPILVDGT 286
Query: 342 HQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYDLQVYRRLGKP 521
Y RL+V Y+L++ LR++DSG ++A IT+ + ITK + L+VY L +P
Sbjct: 287 QGPYSRRLSVPQHGYSLQISPLRLQDSGPFRAWITLHN--PPINITKDFTLRVYEHLQEP 344
Query: 522 KITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGRE------GNVLQIFQTPDNQHL 683
IT S +GTC VTL CS+++ ++V YSW GR G+ L I
Sbjct: 345 SITASSQIMEDGTCLVTLACSLDQAGEDVQYSWDPRGRRTVVSHGGSTLNI-SWRSGVSD 403
Query: 684 TYTCTAWNPVSNNSDSISAQQLCA 755
+Y CT NP+S +S SI + LC+
Sbjct: 404 SYRCTVENPISQSSGSIPIRPLCS 427
Score = 108 bits (271), Expect = 4e-24
Identities = 76/215 (35%), Positives = 108/215 (50%), Gaps = 12/215 (5%)
Frame = +3
Query: 117 MAHRHTWI-LLLCLQTRLGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKT- 290
M H W LLL L T G ++ +V G LG SVT L + + V+SI W ++
Sbjct: 1 MGHSLLWFSLLLGLLTGPGVSRVDSAPVVVTGTLGGSVTLPLMLPVGQHVESIFWMCRSV 60
Query: 291 --SVAVVVPGNSG--TTITVTHQNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSL 458
++A V +G Y+DRL+V G +L++ +L ED+G Y+A I +++
Sbjct: 61 PGTIATVTLEEAGGPDIFYQAETRYWDRLSVVGPGRSLQISHLSWEDAGPYQAHINLRNS 120
Query: 459 EKVTTITKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLG-- 632
T Y L VY +L +P++T S S NG C V LTC E VTYSW+ LG
Sbjct: 121 HIPHTWE--YSLNVYEQLARPRVTMSSRISGNGHCLVILTCVAESRGGTVTYSWTPLGPR 178
Query: 633 ----REGNVLQIFQTPDNQHLTYTCTAWNPVSNNS 725
G+VL + P + L +TC NPVSN+S
Sbjct: 179 TVVSHGGSVLSVSLRPGDGALNFTCMVKNPVSNSS 213
>ref|NP_001230749.1| signaling lymphocytic activation molecule family member 1 [Sus
scrofa].
Length = 339
Score = 82.0 bits (201), Expect = 6e-16
Identities = 81/304 (26%), Positives = 137/304 (45%), Gaps = 10/304 (3%)
Frame = +3
Query: 165 LGAVGSNTDITIVNGILGESVTFSLSILKSEEVKSISWNSKTSVAVVVPGNSGTTITVTH 344
LG +GS+ + + + + +S+ S+ IL S + K V++ +P G++
Sbjct: 37 LGRLGSSVLLPLTSEGIRKSMNKSIHILVSMAESPVHNIKKKIVSLDLP--EGSSPRYLE 94
Query: 345 QNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYDLQVYRRLGKPK 524
Y L N +L + + ED G Y + E V+ C L++Y ++ +P+
Sbjct: 95 DGYAFHLE----NMSLSILESKKEDEGWYFLSLE----ENVSVQQFCLQLKLYEQVSRPE 146
Query: 525 ITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLG--------REGNVLQIFQTPDNQH 680
I T NG C++ L C VEK + +VTYSWS G ++L + P +
Sbjct: 147 IKVLNSTQENGNCSLMLACMVEKGD-HVTYSWSQEGGVILPSPANCSHLLYLTLGPQHAD 205
Query: 681 LTYTCTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVF-IIIIPSVILCL 857
Y CTA NP+SN S + C+ + ++R GL GL + + +I+I V++ L
Sbjct: 206 NVYICTANNPISNRSQTFIPWSRCSPSS--SESRQWGLYVGLLLGGIIGVIMILQVVILL 263
Query: 858 MYKRGQGSYLKTFSKNPDADSKK-TIYTYITAAKDAQTAEYRIYDEIPQSKVPPTKEEPV 1034
+ +RG K + P ++K TIY AQ + + + P P ++P
Sbjct: 264 LRRRG-----KANNYQPAMEAKSLTIY--------AQVQKPGSFQKKPD---PLPAQDPC 307
Query: 1035 NTIY 1046
TIY
Sbjct: 308 TTIY 311
>ref|XP_001928360.1| PREDICTED: natural killer cell receptor 2B4-like [Sus scrofa].
Length = 369
Score = 73.9 bits (180), Expect = 2e-13
Identities = 88/361 (24%), Positives = 149/361 (41%), Gaps = 42/361 (11%)
Frame = +3
Query: 201 VNGILGESVTFSLSILKSEEVKSISW----NSKTSVAVVVPGNSGT-------TITVTHQ 347
V GI G+SV ++++ + S+ W +S +S ++ +G+ + +T
Sbjct: 26 VVGISGDSVWLRPPSIQTK-LYSVKWKMQPHSSSSFFRILLWKNGSAPSYLEESSNLTLN 84
Query: 348 NYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYDLQVYRRLGKPKI 527
+ DRL + + L ++ + DSG+Y +IT S K+ + + V+ + KP +
Sbjct: 85 HLKDRLTFTTEDLTLLIKAAQPWDSGLYCLEITNDS-GKIWKFE--FQVSVFDHVEKPHL 141
Query: 528 TRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLGREGNVLQIFQTP-----------DN 674
T G C VTL+CSV + + N++Y+W G ++ QTP DN
Sbjct: 142 QEQWKTLDRGVCQVTLSCSVSRGD-NISYAWYKGG------ELIQTPRNLTKLEEQIDDN 194
Query: 675 QHLTYTCTAWNPVSNNSDSISAQQLCADIAVGLQTRHPGLLSGLAVLSVFIIIIPSVILC 854
YTC NPVS + ++ Q C L +F+ I+ S +
Sbjct: 195 GLHIYTCNVSNPVSWANHTLHLTQGCLKAYQNL---------------IFLSILVSTVTL 239
Query: 855 LMYKRGQGSYLKTFS-----KNPDADSKKTIYTYITAAKDAQTAEYR------------- 980
LM +L T + + S+ + ++T +D + R
Sbjct: 240 LM-----ALFLGTLTCFCARRRKRKQSQTSPGEFLTIYEDVNNGQARRIQEQNSPEEGTT 294
Query: 981 IYDEIPQSKVPPTKEEPVNTIYSIVQYSDKTEKSTQDSKP--SGTSSYEIVIXASRQHSP 1154
IY I PT EP NT+YS VQ S K + ++ P S T E+ AS+ +P
Sbjct: 295 IYSMIQLQSSVPTSREPANTLYSFVQSSGKAGSTKKNHNPSFSKTIYQEVGQRASKSENP 354
Query: 1155 L 1157
+
Sbjct: 355 V 355
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,188,347
Number of extensions: 772238
Number of successful extensions: 2628
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 2582
Number of HSP's successfully gapped: 17
Length of query: 397
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 296
Effective length of database: 8,829,335
Effective search space: 2613483160
Effective search space used: 2613483160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003309
(1193 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 674 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 674 bits (340), Expect = 0.0
Identities = 343/344 (99%)
Strand = Plus / Plus
Query: 163 gtctgggagcagttggaagcaacacagacatcactatagtaaatgggattctgggggagt 222
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 97837545 gtctgggagcagttggaagcaacacagacatcactatggtaaatgggattctgggggagt 97837604
Query: 223 cagtgactttctccttaagtatcctcaaatcagaagaagttaaaagtatttcctggaatt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97837605 cagtgactttctccttaagtatcctcaaatcagaagaagttaaaagtatttcctggaatt 97837664
Query: 283 ccaaaacatctgtcgctgttgtagtaccaggaaactcaggaacaacgattactgtaaccc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97837665 ccaaaacatctgtcgctgttgtagtaccaggaaactcaggaacaacgattactgtaaccc 97837724
Query: 343 accaaaattactatgaccgactaaatgtctcaggtctgaactacaacctggagctcagaa 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97837725 accaaaattactatgaccgactaaatgtctcaggtctgaactacaacctggagctcagaa 97837784
Query: 403 atctgaggatggaagattcagggatctacaaagctgacattactgtaaagagccttgaaa 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97837785 atctgaggatggaagattcagggatctacaaagctgacattactgtaaagagccttgaaa 97837844
Query: 463 aagtcaccaccatcactaagtgctacgaccttcaagtctatcgt 506
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97837845 aagtcaccaccatcactaagtgctacgaccttcaagtctatcgt 97837888
Score = 500 bits (252), Expect = e-138
Identities = 252/252 (100%)
Strand = Plus / Plus
Query: 505 gtcggcttgggaagccaaaaattactcggagtttaatgacatctatgaatggcacctgta 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97845333 gtcggcttgggaagccaaaaattactcggagtttaatgacatctatgaatggcacctgta 97845392
Query: 565 atgtcacactgacatgctctgtggagaaagaagaaaagaatgtgacatacagttggagtc 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97845393 atgtcacactgacatgctctgtggagaaagaagaaaagaatgtgacatacagttggagtc 97845452
Query: 625 acctgggcagagagggcaatgtccttcaaatcttccagacccctgacaaccaacacctga 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97845453 acctgggcagagagggcaatgtccttcaaatcttccagacccctgacaaccaacacctga 97845512
Query: 685 cttacacatgtacagcctggaaccctgtcagcaacaattctgactccatctctgcccagc 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97845513 cttacacatgtacagcctggaaccctgtcagcaacaattctgactccatctctgcccagc 97845572
Query: 745 agctctgtgcag 756
||||||||||||
Sbjct: 97845573 agctctgtgcag 97845584
Score = 301 bits (152), Expect = 5e-79
Identities = 158/160 (98%)
Strand = Plus / Plus
Query: 5 acttcctttcttcgtcgtgggtttaaaacccacaagaaaattgaagtgaaacagacgttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97824480 acttcctttcttcgtcgtgggtttaaaacccacaagaaaattgaagtgaaacagacgttt 97824539
Query: 65 tctgctggaagagtgctatacttatcttcagcaacttataccctggaagaagatggctca 124
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 97824540 tctgctggaagagtgctatacttatcttcagcagcttataccctggaagaagatggctca 97824599
Query: 125 tcgccacacatggatcttgcttctttgccttcaaacccgt 164
|| |||||||||||||||||||||||||||||||||||||
Sbjct: 97824600 tcaccacacatggatcttgcttctttgccttcaaacccgt 97824639
Score = 248 bits (125), Expect = 6e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 754 cagacatcgcagtgggcctccagactcgccaccctgggctgctgagtgggctggctgtgc 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97845985 cagacatcgcagtgggcctccagactcgccaccctgggctgctgagtgggctggctgtgc 97846044
Query: 814 tctctgtgtttataatcatcataccttcagtgattttgtgtcttatgtacaagagaggac 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97846045 tctctgtgtttataatcatcataccttcagtgattttgtgtcttatgtacaagagaggac 97846104
Query: 874 aaggt 878
|||||
Sbjct: 97846105 aaggt 97846109
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 909 gatgctgactcaaagaaaacaatatacacatacattacagctgcgaaagatgcccagaca 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97848403 gatgctgactcaaagaaaacaatatacacatacattacagctgcgaaagatgcccagaca 97848462
Query: 969 gcagagtacagaatctacgatgaaatcccccagtccaaggtg 1010
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97848463 gcagagtacagaatctacgatgaaatcccccagtccaaggtg 97848504
Score = 190 bits (96), Expect = 1e-45
Identities = 120/126 (95%), Gaps = 2/126 (1%)
Strand = Plus / Plus
Query: 1069 agacagagaaaagcacacaggacagcaaaccttctgggacttcnagctacgaaattgtga 1128
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 97851891 agacagagaaaagcacacaggacagcaaaccttctgggacttcaagctacgaaattgtga 97851950
Query: 1129 tctangcttccaggcagcattctccccttttggaact-agctatgatcagaggtaccggt 1187
|||| |||||||||||||||||||||| || | |||| ||||||||||||||||||||||
Sbjct: 97851951 tctaggcttccaggcagcattctcccc-ttggaaactaagctatgatcagaggtaccggt 97852009
Query: 1188 agatgg 1193
||||||
Sbjct: 97852010 agatgg 97852015
Score = 129 bits (65), Expect = 4e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 1006 aggtgccccccaccaaggaggagccagtgaacacgatttattccatagtgcagtattctg 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97849415 aggtgccccccaccaaggaggagccagtgaacacgatttattccatagtgcagtattctg 97849474
Query: 1066 ataag 1070
|||||
Sbjct: 97849475 ataag 97849479
Score = 69.9 bits (35), Expect = 3e-09
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 875 aggttcctacttgaagaccttcagtaagaaccctg 909
|||||||||||||||||||||||||||||||||||
Sbjct: 97847040 aggttcctacttgaagaccttcagtaagaaccctg 97847074
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,743,007
Number of extensions: 283
Number of successful extensions: 283
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 8
Length of query: 1193
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1172
Effective length of database: 2,808,413,156
Effective search space: 3291460218832
Effective search space used: 3291460218832
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)