Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003311
(1132 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039349.2| AP-1 complex subunit mu-1 [Bos taurus]. 608 e-174
Alignment gi|NP_001029683.1| AP-1 complex subunit mu-2 [Bos taurus]. 502 e-142
Alignment gi|NP_001029695.1| AP-2 complex subunit mu [Bos taurus]. 254 1e-67
Alignment gi|NP_001069148.1| AP-3 complex subunit mu-1 [Bos taurus]. 161 1e-39
Alignment gi|NP_001070567.1| AP-4 complex subunit mu-1 [Bos taurus]. 157 2e-38
Alignment gi|NP_001180169.1| AP-3 complex subunit mu-2 [Bos taurus]. 153 3e-37
Alignment gi|XP_002698754.1| PREDICTED: adaptor-related protein complex 3... 153 3e-37
Alignment gi|NP_001191780.1| stonin-1 [Bos taurus]. 60 4e-09
Alignment gi|NP_001178147.2| stonin-2 [Bos taurus]. 59 8e-09
Alignment gi|XP_002691123.1| PREDICTED: stonin 2 [Bos taurus]. 59 8e-09
>ref|NP_001039349.2| AP-1 complex subunit mu-1 [Bos taurus].
Length = 423
Score = 608 bits (1567), Expect = e-174
Identities = 307/316 (97%), Positives = 309/316 (97%)
Frame = +2
Query: 185 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 364
MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI
Sbjct: 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 60
Query: 365 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 544
KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF
Sbjct: 61 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120
Query: 545 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 724
GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN
Sbjct: 121 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 180
Query: 725 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ 904
LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ 240
Query: 905 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHGPH*YMIKAKSQ 1084
CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEK SH YMIKAKSQ
Sbjct: 241 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMIKAKSQ 300
Query: 1085 LQRRSTAKNVEIHLPV 1132
+RRSTA NVEIH+PV
Sbjct: 301 FKRRSTANNVEIHIPV 316
>ref|NP_001029683.1| AP-1 complex subunit mu-2 [Bos taurus].
Length = 423
Score = 502 bits (1293), Expect = e-142
Identities = 247/316 (78%), Positives = 287/316 (90%)
Frame = +2
Query: 185 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 364
MSASAV++LD+KGK LI RNY+GDV MSE++HFMP+LM++EEEG L+P+L+HG V F+WI
Sbjct: 1 MSASAVFILDVKGKPLISRNYKGDVAMSEIDHFMPLLMQREEEGALTPLLSHGRVHFLWI 60
Query: 365 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 544
K++NLYLVAT+ KNA SLV+SFLYK+V+VFSEYFKELEEESIRDNFVI+YELLDELMDF
Sbjct: 61 KYSNLYLVATTLKNANASLVYSFLYKIVEVFSEYFKELEEESIRDNFVIVYELLDELMDF 120
Query: 545 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 724
G+PQTTDSKILQEYITQ+G+KLETG R P TVTNAVSWRSEGIKY+KNEVF+DVIESVN
Sbjct: 121 GFPQTTDSKILQEYITQQGNKLETGKSRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVN 180
Query: 725 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ 904
LLV+ANG+VL SEIVGSIK++VFLSGMPELRLGLND+VLF+ TGR K+KSVELEDVKFHQ
Sbjct: 181 LLVNANGSVLLSEIVGSIKLKVFLSGMPELRLGLNDRVLFELTGRSKNKSVELEDVKFHQ 240
Query: 905 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHGPH*YMIKAKSQ 1084
CVRLSRF+NDRTISFIPPDG+FELMSYRL+T VKPLIWIESVIEK SH M+KAK Q
Sbjct: 241 CVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIESVIEKFSHSRVEIMVKAKGQ 300
Query: 1085 LQRRSTAKNVEIHLPV 1132
+++S A VEI +PV
Sbjct: 301 FKKQSVANGVEISVPV 316
>ref|NP_001029695.1| AP-2 complex subunit mu [Bos taurus].
Length = 435
Score = 254 bits (649), Expect = 1e-67
Identities = 126/322 (39%), Positives = 205/322 (63%), Gaps = 12/322 (3%)
Frame = +2
Query: 200 VYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNL 379
+++ + KG+VLI R YR D+ + V+ F ++ ++ + SP+ F +K +N+
Sbjct: 5 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 63
Query: 380 YLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQT 559
+L A +K+N ++VF FLYK+ V + YF ++ EE+I++NFV+IYELLDE++DFGYPQ
Sbjct: 64 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 123
Query: 560 TDSKILQEYITQEG----HKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVNL 727
+++ L+ +ITQ+G H+ + + + VT + WR EGIKYR+NE+FLDV+ESVNL
Sbjct: 124 SETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNL 183
Query: 728 LVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS--------KSVEL 883
L+S G VL + + G + M+ +LSGMPE + G+NDK++ + G+G + +S+ +
Sbjct: 184 LMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAI 243
Query: 884 EDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHGPH*Y 1063
+D FHQCVRLS+F+++R+ISFIPPDGEFELM YR + + ++ +
Sbjct: 244 DDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEV 303
Query: 1064 MIKAKSQLQRRSTAKNVEIHLP 1129
+ KS + A+ +E+ +P
Sbjct: 304 KVVIKSNFKPSLLAQKIEVRIP 325
>ref|NP_001069148.1| AP-3 complex subunit mu-1 [Bos taurus].
Length = 418
Score = 161 bits (407), Expect = 1e-39
Identities = 96/326 (29%), Positives = 171/326 (52%), Gaps = 15/326 (4%)
Frame = +2
Query: 197 AVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNN 376
++++++ G + + ++++ V S ++F + + + P+++ + I +
Sbjct: 4 SLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIYRDK 63
Query: 377 LYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQ 556
L+ V+ + V FL++V F +YF E E +I+DN VI+YELL+E++D G+P
Sbjct: 64 LFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPL 123
Query: 557 TTDSKILQEY-----ITQEGHKLETGAPR-----PPATVTNAVSWRSEGIKYRKNEVFLD 706
T+S IL+E I + G TG+ P ++N + WR G+KY NE + D
Sbjct: 124 ATESNILKELIKPPTILRSGVNSITGSSNVGDTLPTGQLSN-IPWRRAGVKYTNNEAYFD 182
Query: 707 VIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELE 886
V+E ++ ++ +G+ + +EI G I + LSGMP+L L + L L+
Sbjct: 183 VVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL-------------LD 229
Query: 887 DVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTH--VKPLIWIESVI---EKASHG 1051
DV FH C+R R+E++R +SFIPPDG F L+SYR+++ V ++++ I E +S G
Sbjct: 230 DVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCG 289
Query: 1052 PH*YMIKAKSQLQRRSTAKNVEIHLP 1129
I K + + V +H+P
Sbjct: 290 RFDITIGPKQNMGKTIEGITVTVHMP 315
>ref|NP_001070567.1| AP-4 complex subunit mu-1 [Bos taurus].
Length = 452
Score = 157 bits (397), Expect = 2e-38
Identities = 104/340 (30%), Positives = 180/340 (52%), Gaps = 27/340 (7%)
Frame = +2
Query: 194 SAVYVLDLKGKVLICRNYRGDV---DMSEVEHFMPILMEKEEEGMLSPILAHGGVR-FMW 361
S ++L KG LI +++RGD D++E+ + + +E SP++ H R F+
Sbjct: 3 SQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGDE----SPVVMHHDDRHFIH 58
Query: 362 IKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMD 541
I+H+ LYLVAT+ +N + L ++ + +Y L E +I N ++YELLDE++D
Sbjct: 59 IRHSGLYLVATTSENISPFSLLELLSRLATLLGDYCGSLGEATISRNVALVYELLDEVLD 118
Query: 542 FGYPQTTDSKILQEYITQE------------------GHKLETGAPRPPATVTNAV-SWR 664
+GY QTT +++L+ +I E G + + P + + V S R
Sbjct: 119 YGYVQTTSTEVLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSR 178
Query: 665 SEGIKYRKNEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLF 844
S+ + +KNEVFLDV+E +++L+++NG++L+ ++ G I+++ FL E+R+GL ++
Sbjct: 179 SD--QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCV 236
Query: 845 DNTG-RGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVK---PL 1012
+ RG + +++V FH V L FE+ R + PP GE +M Y+L+ + P
Sbjct: 237 GKSELRGYGPGIRVDEVSFHSSVYLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPF 296
Query: 1013 IWIESVIEKASHGPH*YMIKAKSQLQRRSTAKNVEIHLPV 1132
SV G +K + L +S A NV +HLP+
Sbjct: 297 RLFPSVQWDRGSGRLQVYLKLRCDLPPKSQALNVRLHLPL 336
>ref|NP_001180169.1| AP-3 complex subunit mu-2 [Bos taurus].
Length = 418
Score = 153 bits (386), Expect = 3e-37
Identities = 86/282 (30%), Positives = 145/282 (51%), Gaps = 16/282 (5%)
Frame = +2
Query: 197 AVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNN 376
++++++ G + + ++++ V S ++F E + P++ + + +
Sbjct: 4 SLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVYRHK 63
Query: 377 LYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQ 556
++ VA + V FL++VV F +YF E I+DN V++YE+L+E++D G+P
Sbjct: 64 IFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNGFPL 123
Query: 557 TTDSKILQEYI----------------TQEGHKLETGAPRPPATVTNAVSWRSEGIKYRK 688
T+S IL+E I T G +L TG + V WR G+KY
Sbjct: 124 ATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQ-------LSVVPWRRTGVKYTN 176
Query: 689 NEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS 868
NE + DVIE ++ ++ +G+ + +EI G I V L+GMP+L L + L
Sbjct: 177 NEAYFDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSFMNPRL--------- 227
Query: 869 KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLN 994
L+DV FH CVR R+E++R +SFIPPDG F L+SY ++
Sbjct: 228 ----LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVS 265
>ref|XP_002698754.1| PREDICTED: adaptor-related protein complex 3, mu 2 subunit [Bos
taurus].
Length = 418
Score = 153 bits (386), Expect = 3e-37
Identities = 86/282 (30%), Positives = 145/282 (51%), Gaps = 16/282 (5%)
Frame = +2
Query: 197 AVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNN 376
++++++ G + + ++++ V S ++F E + P++ + + +
Sbjct: 4 SLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVYRHK 63
Query: 377 LYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQ 556
++ VA + V FL++VV F +YF E I+DN V++YE+L+E++D G+P
Sbjct: 64 IFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNGFPL 123
Query: 557 TTDSKILQEYI----------------TQEGHKLETGAPRPPATVTNAVSWRSEGIKYRK 688
T+S IL+E I T G +L TG + V WR G+KY
Sbjct: 124 ATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQ-------LSVVPWRRTGVKYTN 176
Query: 689 NEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS 868
NE + DVIE ++ ++ +G+ + +EI G I V L+GMP+L L + L
Sbjct: 177 NEAYFDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSFMNPRL--------- 227
Query: 869 KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLN 994
L+DV FH CVR R+E++R +SFIPPDG F L+SY ++
Sbjct: 228 ----LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVS 265
>ref|NP_001191780.1| stonin-1 [Bos taurus].
Length = 732
Score = 60.1 bits (144), Expect = 4e-09
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 15/166 (9%)
Frame = +2
Query: 680 YRKNEVFLDVIESV-NLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTG 856
Y + E+FL+++++ + G ++ S ++ I F++G E L LND L
Sbjct: 406 YEEQEIFLEIVDNFWGKITKEEGKLVESAVITQISCLCFVNGNTECFLTLNDHELQKRNE 465
Query: 857 R-----GKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDG-EFELMSYR-------LNT 997
R + K +++ D FH+CV+ FE R I F+P D FELM ++ L
Sbjct: 466 RYFEKDPEKKGIDILDYHFHKCVKAQEFEQSRIIKFVPLDACRFELMRFKTSHSGEDLPF 525
Query: 998 HVKPLIWIE-SVIEKASHGPH*YMIKAKSQLQRRSTAKNVEIHLPV 1132
+K ++ ++ + +E + +++ S + N+ IH PV
Sbjct: 526 SLKSVVVVQGAYVELQAFVNMAPLVQRPSHAGSWRSCDNIMIHFPV 571
>ref|NP_001178147.2| stonin-2 [Bos taurus].
Length = 897
Score = 58.9 bits (141), Expect = 8e-09
Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Frame = +2
Query: 671 GIKYRKNEVFLDVIESVNLLVSANGN-VLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFD 847
G+ Y + E+ +DV + + LVS N +L+ ++ I + FLSG+ E RLGLND ++
Sbjct: 562 GLNYLEEEMTVDVQDEFSGLVSKGDNQILQHRVLTRIHVLSFLSGLAECRLGLNDVLVKG 621
Query: 848 NTGRGK--------SKSVELEDVKFHQCVRLSRFENDRTISFIPPDG-EFELMSYR 988
N + +K + L + +FH CV F R I F P D FELM +R
Sbjct: 622 NEVVSRQDIVPTTTTKWIRLHECRFHGCVDEDVFRGSRVILFNPLDACRFELMRFR 677
>ref|XP_002691123.1| PREDICTED: stonin 2 [Bos taurus].
Length = 965
Score = 58.9 bits (141), Expect = 8e-09
Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Frame = +2
Query: 671 GIKYRKNEVFLDVIESVNLLVSANGN-VLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFD 847
G+ Y + E+ +DV + + LVS N +L+ ++ I + FLSG+ E RLGLND ++
Sbjct: 562 GLNYLEEEMTVDVQDEFSGLVSKGDNQILQHRVLTRIHVLSFLSGLAECRLGLNDVLVKG 621
Query: 848 NTGRGK--------SKSVELEDVKFHQCVRLSRFENDRTISFIPPDG-EFELMSYR 988
N + +K + L + +FH CV F R I F P D FELM +R
Sbjct: 622 NEVVSRQDIVPTTTTKWIRLHECRFHGCVDEDVFRGSRVILFNPLDACRFELMRFR 677
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,889,130
Number of extensions: 1242643
Number of successful extensions: 5135
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 5114
Number of HSP's successfully gapped: 10
Length of query: 377
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 273
Effective length of database: 14,240,222
Effective search space: 3887580606
Effective search space used: 3887580606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003311
(1132 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866035.1| PREDICTED: similar to adaptor-related protein c... 608 e-174
Alignment gi|XP_852486.1| PREDICTED: similar to adaptor-related protein c... 608 e-174
Alignment gi|XP_865989.1| PREDICTED: similar to adaptor-related protein c... 602 e-172
Alignment gi|XP_865841.1| PREDICTED: similar to adaptor-related protein c... 602 e-172
Alignment gi|XP_866004.1| PREDICTED: similar to adaptor-related protein c... 601 e-172
Alignment gi|XP_865978.1| PREDICTED: similar to adaptor-related protein c... 600 e-172
Alignment gi|XP_865950.1| PREDICTED: similar to adaptor-related protein c... 600 e-171
Alignment gi|XP_865959.1| PREDICTED: similar to adaptor-related protein c... 599 e-171
Alignment gi|XP_865913.1| PREDICTED: similar to adaptor-related protein c... 599 e-171
Alignment gi|XP_865884.1| PREDICTED: similar to adaptor-related protein c... 595 e-170
>ref|XP_866035.1| PREDICTED: similar to adaptor-related protein complex 1, mu 1 subunit
isoform 17 [Canis familiaris].
Length = 424
Score = 608 bits (1567), Expect = e-174
Identities = 307/316 (97%), Positives = 309/316 (97%)
Frame = +2
Query: 185 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 364
MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI
Sbjct: 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 60
Query: 365 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 544
KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF
Sbjct: 61 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120
Query: 545 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 724
GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN
Sbjct: 121 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 180
Query: 725 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ 904
LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ 240
Query: 905 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHGPH*YMIKAKSQ 1084
CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEK SH YMIKAKSQ
Sbjct: 241 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMIKAKSQ 300
Query: 1085 LQRRSTAKNVEIHLPV 1132
+RRSTA NVEIH+PV
Sbjct: 301 FKRRSTANNVEIHIPV 316
>ref|XP_852486.1| PREDICTED: similar to adaptor-related protein complex 1, mu 1 subunit
isoform 1 [Canis familiaris].
Length = 423
Score = 608 bits (1567), Expect = e-174
Identities = 307/316 (97%), Positives = 309/316 (97%)
Frame = +2
Query: 185 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 364
MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI
Sbjct: 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 60
Query: 365 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 544
KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF
Sbjct: 61 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120
Query: 545 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 724
GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN
Sbjct: 121 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 180
Query: 725 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ 904
LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ 240
Query: 905 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHGPH*YMIKAKSQ 1084
CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEK SH YMIKAKSQ
Sbjct: 241 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMIKAKSQ 300
Query: 1085 LQRRSTAKNVEIHLPV 1132
+RRSTA NVEIH+PV
Sbjct: 301 FKRRSTANNVEIHIPV 316
>ref|XP_865989.1| PREDICTED: similar to adaptor-related protein complex 1, mu 1 subunit
isoform 14 [Canis familiaris].
Length = 428
Score = 602 bits (1551), Expect = e-172
Identities = 307/321 (95%), Positives = 309/321 (96%), Gaps = 5/321 (1%)
Frame = +2
Query: 185 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 364
MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI
Sbjct: 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 60
Query: 365 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 544
KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF
Sbjct: 61 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120
Query: 545 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 724
GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN
Sbjct: 121 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 180
Query: 725 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR-----GKSKSVELED 889
LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR GKSKSVELED
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGREDRRGGKSKSVELED 240
Query: 890 VKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHGPH*YMI 1069
VKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEK SH YMI
Sbjct: 241 VKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMI 300
Query: 1070 KAKSQLQRRSTAKNVEIHLPV 1132
KAKSQ +RRSTA NVEIH+PV
Sbjct: 301 KAKSQFKRRSTANNVEIHIPV 321
>ref|XP_865841.1| PREDICTED: similar to adaptor-related protein complex 1, mu 1 subunit
isoform 4 [Canis familiaris].
Length = 477
Score = 602 bits (1551), Expect = e-172
Identities = 307/321 (95%), Positives = 309/321 (96%), Gaps = 5/321 (1%)
Frame = +2
Query: 185 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 364
MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI
Sbjct: 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 60
Query: 365 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 544
KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF
Sbjct: 61 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120
Query: 545 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 724
GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN
Sbjct: 121 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 180
Query: 725 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR-----GKSKSVELED 889
LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR GKSKSVELED
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGREDRRGGKSKSVELED 240
Query: 890 VKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHGPH*YMI 1069
VKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEK SH YMI
Sbjct: 241 VKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMI 300
Query: 1070 KAKSQLQRRSTAKNVEIHLPV 1132
KAKSQ +RRSTA NVEIH+PV
Sbjct: 301 KAKSQFKRRSTANNVEIHIPV 321
>ref|XP_866004.1| PREDICTED: similar to adaptor-related protein complex 1, mu 1 subunit
isoform 15 [Canis familiaris].
Length = 429
Score = 601 bits (1550), Expect = e-172
Identities = 307/322 (95%), Positives = 309/322 (95%), Gaps = 6/322 (1%)
Frame = +2
Query: 185 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 364
MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI
Sbjct: 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 60
Query: 365 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 544
KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF
Sbjct: 61 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120
Query: 545 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 724
GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN
Sbjct: 121 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 180
Query: 725 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR------GKSKSVELE 886
LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR GKSKSVELE
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRLKSEPGGKSKSVELE 240
Query: 887 DVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHGPH*YM 1066
DVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEK SH YM
Sbjct: 241 DVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYM 300
Query: 1067 IKAKSQLQRRSTAKNVEIHLPV 1132
IKAKSQ +RRSTA NVEIH+PV
Sbjct: 301 IKAKSQFKRRSTANNVEIHIPV 322
>ref|XP_865978.1| PREDICTED: similar to adaptor-related protein complex 1, mu 1 subunit
isoform 13 [Canis familiaris].
Length = 432
Score = 600 bits (1547), Expect = e-172
Identities = 307/325 (94%), Positives = 309/325 (95%), Gaps = 9/325 (2%)
Frame = +2
Query: 185 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 364
MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI
Sbjct: 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 60
Query: 365 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 544
KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF
Sbjct: 61 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120
Query: 545 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 724
GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN
Sbjct: 121 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 180
Query: 725 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR---------GKSKSV 877
LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR GKSKSV
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRDSRTEGLSSGKSKSV 240
Query: 878 ELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHGPH 1057
ELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEK SH
Sbjct: 241 ELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRI 300
Query: 1058 *YMIKAKSQLQRRSTAKNVEIHLPV 1132
YMIKAKSQ +RRSTA NVEIH+PV
Sbjct: 301 EYMIKAKSQFKRRSTANNVEIHIPV 325
>ref|XP_865950.1| PREDICTED: similar to adaptor-related protein complex 1, mu 1 subunit
isoform 11 [Canis familiaris].
Length = 429
Score = 600 bits (1546), Expect = e-171
Identities = 306/322 (95%), Positives = 309/322 (95%), Gaps = 6/322 (1%)
Frame = +2
Query: 185 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 364
MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI
Sbjct: 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 60
Query: 365 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 544
KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF
Sbjct: 61 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120
Query: 545 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 724
GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN
Sbjct: 121 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 180
Query: 725 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR------GKSKSVELE 886
LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTG+ GKSKSVELE
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGQNTEEQSGKSKSVELE 240
Query: 887 DVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHGPH*YM 1066
DVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEK SH YM
Sbjct: 241 DVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYM 300
Query: 1067 IKAKSQLQRRSTAKNVEIHLPV 1132
IKAKSQ +RRSTA NVEIH+PV
Sbjct: 301 IKAKSQFKRRSTANNVEIHIPV 322
>ref|XP_865959.1| PREDICTED: similar to adaptor-related protein complex 1, mu 1 subunit
isoform 12 [Canis familiaris].
Length = 434
Score = 599 bits (1545), Expect = e-171
Identities = 307/327 (93%), Positives = 309/327 (94%), Gaps = 11/327 (3%)
Frame = +2
Query: 185 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 364
MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI
Sbjct: 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 60
Query: 365 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 544
KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF
Sbjct: 61 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120
Query: 545 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 724
GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN
Sbjct: 121 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 180
Query: 725 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR-----------GKSK 871
LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR GKSK
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGREYPATPTAALGGKSK 240
Query: 872 SVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHG 1051
SVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEK SH
Sbjct: 241 SVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHS 300
Query: 1052 PH*YMIKAKSQLQRRSTAKNVEIHLPV 1132
YMIKAKSQ +RRSTA NVEIH+PV
Sbjct: 301 RIEYMIKAKSQFKRRSTANNVEIHIPV 327
>ref|XP_865913.1| PREDICTED: similar to adaptor-related protein complex 1, mu 1 subunit
isoform 9 [Canis familiaris].
Length = 428
Score = 599 bits (1545), Expect = e-171
Identities = 306/321 (95%), Positives = 308/321 (95%), Gaps = 5/321 (1%)
Frame = +2
Query: 185 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 364
MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI
Sbjct: 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 60
Query: 365 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 544
KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF
Sbjct: 61 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120
Query: 545 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 724
GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN
Sbjct: 121 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 180
Query: 725 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNT-----GRGKSKSVELED 889
LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNT G GKSKSVELED
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGPPGNGSGKSKSVELED 240
Query: 890 VKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHGPH*YMI 1069
VKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEK SH YMI
Sbjct: 241 VKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMI 300
Query: 1070 KAKSQLQRRSTAKNVEIHLPV 1132
KAKSQ +RRSTA NVEIH+PV
Sbjct: 301 KAKSQFKRRSTANNVEIHIPV 321
>ref|XP_865884.1| PREDICTED: similar to adaptor-related protein complex 1, mu 1 subunit
isoform 7 [Canis familiaris].
Length = 424
Score = 595 bits (1533), Expect = e-170
Identities = 303/317 (95%), Positives = 306/317 (96%), Gaps = 1/317 (0%)
Frame = +2
Query: 185 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 364
MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI
Sbjct: 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 60
Query: 365 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 544
KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF
Sbjct: 61 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120
Query: 545 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 724
GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN
Sbjct: 121 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 180
Query: 725 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR-GKSKSVELEDVKFH 901
LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR + SVELEDVKFH
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRETQGMSVELEDVKFH 240
Query: 902 QCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHGPH*YMIKAKS 1081
QCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEK SH YMIKAKS
Sbjct: 241 QCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMIKAKS 300
Query: 1082 QLQRRSTAKNVEIHLPV 1132
Q +RRSTA NVEIH+PV
Sbjct: 301 QFKRRSTANNVEIHIPV 317
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,927,982
Number of extensions: 1290896
Number of successful extensions: 5590
Number of sequences better than 1.0e-05: 53
Number of HSP's gapped: 5484
Number of HSP's successfully gapped: 54
Length of query: 377
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 273
Effective length of database: 15,407,560
Effective search space: 4206263880
Effective search space used: 4206263880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003311
(1132 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115882.1| AP-1 complex subunit mu-1 isoform 2 [Homo sapie... 608 e-174
Alignment gi|NP_001123996.1| AP-1 complex subunit mu-1 isoform 1 [Homo sa... 599 e-171
Alignment gi|NP_005489.2| AP-1 complex subunit mu-2 [Homo sapiens]. 496 e-140
Alignment gi|NP_001020376.1| AP-2 complex subunit mu isoform b [Homo sapi... 257 2e-68
Alignment gi|NP_004059.2| AP-2 complex subunit mu isoform a [Homo sapiens]. 254 1e-67
Alignment gi|NP_036227.1| AP-3 complex subunit mu-1 [Homo sapiens]. 159 6e-39
Alignment gi|NP_996895.1| AP-3 complex subunit mu-1 [Homo sapiens]. 159 6e-39
Alignment gi|NP_004713.2| AP-4 complex subunit mu-1 [Homo sapiens]. 157 2e-38
Alignment gi|NP_001127768.1| AP-3 complex subunit mu-2 [Homo sapiens]. 153 3e-37
Alignment gi|NP_006794.1| AP-3 complex subunit mu-2 [Homo sapiens]. 153 3e-37
>ref|NP_115882.1| AP-1 complex subunit mu-1 isoform 2 [Homo sapiens].
Length = 423
Score = 608 bits (1567), Expect = e-174
Identities = 307/316 (97%), Positives = 309/316 (97%)
Frame = +2
Query: 185 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 364
MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI
Sbjct: 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 60
Query: 365 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 544
KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF
Sbjct: 61 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120
Query: 545 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 724
GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN
Sbjct: 121 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 180
Query: 725 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ 904
LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ 240
Query: 905 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHGPH*YMIKAKSQ 1084
CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEK SH YMIKAKSQ
Sbjct: 241 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMIKAKSQ 300
Query: 1085 LQRRSTAKNVEIHLPV 1132
+RRSTA NVEIH+PV
Sbjct: 301 FKRRSTANNVEIHIPV 316
>ref|NP_001123996.1| AP-1 complex subunit mu-1 isoform 1 [Homo sapiens].
Length = 435
Score = 599 bits (1544), Expect = e-171
Identities = 307/328 (93%), Positives = 309/328 (94%), Gaps = 12/328 (3%)
Frame = +2
Query: 185 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 364
MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI
Sbjct: 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 60
Query: 365 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 544
KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF
Sbjct: 61 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120
Query: 545 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 724
GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN
Sbjct: 121 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 180
Query: 725 LL------------VSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS 868
LL VSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS
Sbjct: 181 LLGKYPGVGWLGHTVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS 240
Query: 869 KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASH 1048
KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEK SH
Sbjct: 241 KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSH 300
Query: 1049 GPH*YMIKAKSQLQRRSTAKNVEIHLPV 1132
YMIKAKSQ +RRSTA NVEIH+PV
Sbjct: 301 SRIEYMIKAKSQFKRRSTANNVEIHIPV 328
>ref|NP_005489.2| AP-1 complex subunit mu-2 [Homo sapiens].
Length = 423
Score = 496 bits (1278), Expect = e-140
Identities = 243/316 (76%), Positives = 284/316 (89%)
Frame = +2
Query: 185 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 364
MSASAV++LD+KGK LI RNY+GDV MS++EHFMP+L+++EEEG L+P+L+HG V F+WI
Sbjct: 1 MSASAVFILDVKGKPLISRNYKGDVAMSKIEHFMPLLVQREEEGALAPLLSHGQVHFLWI 60
Query: 365 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 544
KH+NLYLVAT+ KNA SLV+SFLYK ++VF EYFKELEEESIRDNFVI+YELLDELMDF
Sbjct: 61 KHSNLYLVATTSKNANASLVYSFLYKTIEVFCEYFKELEEESIRDNFVIVYELLDELMDF 120
Query: 545 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 724
G+PQTTDSKILQEYITQ+ +KLETG R P TVTNAVSWRSEGIKY+KNEVF+DVIESVN
Sbjct: 121 GFPQTTDSKILQEYITQQSNKLETGKSRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVN 180
Query: 725 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ 904
LLV+ANG+VL SEIVG+IK++VFLSGMPELRLGLND+VLF+ TGR K+KSVELEDVKFHQ
Sbjct: 181 LLVNANGSVLLSEIVGTIKLKVFLSGMPELRLGLNDRVLFELTGRSKNKSVELEDVKFHQ 240
Query: 905 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHGPH*YMIKAKSQ 1084
CVRLSRF+NDRTISFIPPDG+FELMSYRL+T VKPLIWIESVIEK SH M+KAK Q
Sbjct: 241 CVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIESVIEKFSHSRVEIMVKAKGQ 300
Query: 1085 LQRRSTAKNVEIHLPV 1132
+++S A VEI +PV
Sbjct: 301 FKKQSVANGVEISVPV 316
>ref|NP_001020376.1| AP-2 complex subunit mu isoform b [Homo sapiens].
Length = 433
Score = 257 bits (656), Expect = 2e-68
Identities = 128/320 (40%), Positives = 205/320 (64%), Gaps = 10/320 (3%)
Frame = +2
Query: 200 VYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNL 379
+++ + KG+VLI R YR D+ + V+ F ++ ++ + SP+ F +K +N+
Sbjct: 5 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 63
Query: 380 YLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQT 559
+L A +K+N ++VF FLYK+ V + YF ++ EE+I++NFV+IYELLDE++DFGYPQ
Sbjct: 64 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 123
Query: 560 TDSKILQEYITQEGHKLETGAPRPPAT--VTNAVSWRSEGIKYRKNEVFLDVIESVNLLV 733
+++ L+ +ITQ+G K +T + T VT + WR EGIKYR+NE+FLDV+ESVNLL+
Sbjct: 124 SETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLM 183
Query: 734 SANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS--------KSVELED 889
S G VL + + G + M+ +LSGMPE + G+NDK++ + G+G + +S+ ++D
Sbjct: 184 SPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDD 243
Query: 890 VKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHGPH*YMI 1069
FHQCVRLS+F+++R+ISFIPPDGEFELM YR + + ++ + +
Sbjct: 244 CTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKV 303
Query: 1070 KAKSQLQRRSTAKNVEIHLP 1129
KS + A+ +E+ +P
Sbjct: 304 VIKSNFKPSLLAQKIEVRIP 323
>ref|NP_004059.2| AP-2 complex subunit mu isoform a [Homo sapiens].
Length = 435
Score = 254 bits (649), Expect = 1e-67
Identities = 126/322 (39%), Positives = 205/322 (63%), Gaps = 12/322 (3%)
Frame = +2
Query: 200 VYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNL 379
+++ + KG+VLI R YR D+ + V+ F ++ ++ + SP+ F +K +N+
Sbjct: 5 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 63
Query: 380 YLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQT 559
+L A +K+N ++VF FLYK+ V + YF ++ EE+I++NFV+IYELLDE++DFGYPQ
Sbjct: 64 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 123
Query: 560 TDSKILQEYITQEG----HKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVNL 727
+++ L+ +ITQ+G H+ + + + VT + WR EGIKYR+NE+FLDV+ESVNL
Sbjct: 124 SETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNL 183
Query: 728 LVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS--------KSVEL 883
L+S G VL + + G + M+ +LSGMPE + G+NDK++ + G+G + +S+ +
Sbjct: 184 LMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAI 243
Query: 884 EDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHGPH*Y 1063
+D FHQCVRLS+F+++R+ISFIPPDGEFELM YR + + ++ +
Sbjct: 244 DDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEV 303
Query: 1064 MIKAKSQLQRRSTAKNVEIHLP 1129
+ KS + A+ +E+ +P
Sbjct: 304 KVVIKSNFKPSLLAQKIEVRIP 325
>ref|NP_036227.1| AP-3 complex subunit mu-1 [Homo sapiens].
Length = 418
Score = 159 bits (401), Expect = 6e-39
Identities = 94/326 (28%), Positives = 167/326 (51%), Gaps = 15/326 (4%)
Frame = +2
Query: 197 AVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNN 376
++++++ G + + ++++ V S ++F + + + P+++ + I +
Sbjct: 4 SLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIYRDK 63
Query: 377 LYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQ 556
L+ V+ + V FL++V F +YF E E +I+DN VI+YELL+E++D G+P
Sbjct: 64 LFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPL 123
Query: 557 TTDSKILQEYI----------TQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLD 706
T+S IL+E I G P ++N + WR G+KY NE + D
Sbjct: 124 ATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSN-IPWRRAGVKYTNNEAYFD 182
Query: 707 VIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELE 886
V+E ++ ++ +G+ + +EI G I + LSGMP+L L + L L+
Sbjct: 183 VVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL-------------LD 229
Query: 887 DVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTH--VKPLIWIESVI---EKASHG 1051
DV FH C+R R+E++R +SFIPPDG F L+SYR+++ V ++++ I E +S G
Sbjct: 230 DVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCG 289
Query: 1052 PH*YMIKAKSQLQRRSTAKNVEIHLP 1129
I K + + V +H+P
Sbjct: 290 RFDITIGPKQNMGKTIEGITVTVHMP 315
>ref|NP_996895.1| AP-3 complex subunit mu-1 [Homo sapiens].
Length = 418
Score = 159 bits (401), Expect = 6e-39
Identities = 94/326 (28%), Positives = 167/326 (51%), Gaps = 15/326 (4%)
Frame = +2
Query: 197 AVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNN 376
++++++ G + + ++++ V S ++F + + + P+++ + I +
Sbjct: 4 SLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIYRDK 63
Query: 377 LYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQ 556
L+ V+ + V FL++V F +YF E E +I+DN VI+YELL+E++D G+P
Sbjct: 64 LFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPL 123
Query: 557 TTDSKILQEYI----------TQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLD 706
T+S IL+E I G P ++N + WR G+KY NE + D
Sbjct: 124 ATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSN-IPWRRAGVKYTNNEAYFD 182
Query: 707 VIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELE 886
V+E ++ ++ +G+ + +EI G I + LSGMP+L L + L L+
Sbjct: 183 VVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL-------------LD 229
Query: 887 DVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTH--VKPLIWIESVI---EKASHG 1051
DV FH C+R R+E++R +SFIPPDG F L+SYR+++ V ++++ I E +S G
Sbjct: 230 DVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCG 289
Query: 1052 PH*YMIKAKSQLQRRSTAKNVEIHLP 1129
I K + + V +H+P
Sbjct: 290 RFDITIGPKQNMGKTIEGITVTVHMP 315
>ref|NP_004713.2| AP-4 complex subunit mu-1 [Homo sapiens].
Length = 453
Score = 157 bits (396), Expect = 2e-38
Identities = 101/339 (29%), Positives = 178/339 (52%), Gaps = 26/339 (7%)
Frame = +2
Query: 194 SAVYVLDLKGKVLICRNYRGDV---DMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 364
S ++L KG LI +++RGD D++E+ + + +E + ++ H G F+ I
Sbjct: 3 SQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGDESPV---VMHHHGRHFIHI 59
Query: 365 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 544
+H+ LYLV T+ +N + L ++ + +Y L E +I N ++YELLDE++D+
Sbjct: 60 RHSGLYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEVLDY 119
Query: 545 GYPQTTDSKILQEYITQE------------------GHKLETGAPRPPATVTNAV-SWRS 667
GY QTT +++L+ +I E G + + P + + V S RS
Sbjct: 120 GYVQTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSRS 179
Query: 668 EGIKYRKNEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFD 847
+ + +KNEVFLDV+E +++L+++NG++L+ ++ G I+++ FL E+R+GL ++
Sbjct: 180 D--QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFCVG 237
Query: 848 NTG-RGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVK---PLI 1015
+ RG + +++V FH V L FE+ R + PP GE +M Y+L+ + P
Sbjct: 238 KSELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFR 297
Query: 1016 WIESVIEKASHGPH*YMIKAKSQLQRRSTAKNVEIHLPV 1132
SV G +K + L +S A NV +HLP+
Sbjct: 298 LFPSVQWDRGSGRLQVYLKLRCDLLSKSQALNVRLHLPL 336
>ref|NP_001127768.1| AP-3 complex subunit mu-2 [Homo sapiens].
Length = 418
Score = 153 bits (386), Expect = 3e-37
Identities = 86/282 (30%), Positives = 145/282 (51%), Gaps = 16/282 (5%)
Frame = +2
Query: 197 AVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNN 376
++++++ G + + ++++ V S ++F E + P++ + + +
Sbjct: 4 SLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVYRHK 63
Query: 377 LYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQ 556
++ VA + V FL++VV F +YF E I+DN V++YE+L+E++D G+P
Sbjct: 64 IFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNGFPL 123
Query: 557 TTDSKILQEYI----------------TQEGHKLETGAPRPPATVTNAVSWRSEGIKYRK 688
T+S IL+E I T G +L TG + V WR G+KY
Sbjct: 124 ATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQ-------LSVVPWRRTGVKYTN 176
Query: 689 NEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS 868
NE + DVIE ++ ++ +G+ + +EI G I V L+GMP+L L + L
Sbjct: 177 NEAYFDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSFMNPRL--------- 227
Query: 869 KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLN 994
L+DV FH CVR R+E++R +SFIPPDG F L+SY ++
Sbjct: 228 ----LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVS 265
>ref|NP_006794.1| AP-3 complex subunit mu-2 [Homo sapiens].
Length = 418
Score = 153 bits (386), Expect = 3e-37
Identities = 86/282 (30%), Positives = 145/282 (51%), Gaps = 16/282 (5%)
Frame = +2
Query: 197 AVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNN 376
++++++ G + + ++++ V S ++F E + P++ + + +
Sbjct: 4 SLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVYRHK 63
Query: 377 LYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQ 556
++ VA + V FL++VV F +YF E I+DN V++YE+L+E++D G+P
Sbjct: 64 IFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNGFPL 123
Query: 557 TTDSKILQEYI----------------TQEGHKLETGAPRPPATVTNAVSWRSEGIKYRK 688
T+S IL+E I T G +L TG + V WR G+KY
Sbjct: 124 ATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQ-------LSVVPWRRTGVKYTN 176
Query: 689 NEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS 868
NE + DVIE ++ ++ +G+ + +EI G I V L+GMP+L L + L
Sbjct: 177 NEAYFDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSFMNPRL--------- 227
Query: 869 KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLN 994
L+DV FH CVR R+E++R +SFIPPDG F L+SY ++
Sbjct: 228 ----LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVS 265
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,876,873
Number of extensions: 1251367
Number of successful extensions: 4921
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4887
Number of HSP's successfully gapped: 16
Length of query: 377
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 273
Effective length of database: 14,868,908
Effective search space: 4059211884
Effective search space used: 4059211884
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003311
(1132 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031482.1| AP-1 complex subunit mu-1 [Mus musculus]. 606 e-174
Alignment gi|NP_033808.2| AP-1 complex subunit mu-2 isoform 2 [Mus muscul... 500 e-142
Alignment gi|NP_001103770.1| AP-1 complex subunit mu-2 isoform 1 [Mus mus... 493 e-139
Alignment gi|NP_033809.1| AP-2 complex subunit mu [Mus musculus]. 254 9e-68
Alignment gi|NP_061299.3| AP-3 complex subunit mu-1 [Mus musculus]. 159 5e-39
Alignment gi|NP_067367.3| AP-4 complex subunit mu-1 [Mus musculus]. 157 1e-38
Alignment gi|NP_001116292.1| AP-3 complex subunit mu-2 [Mus musculus]. 151 1e-36
Alignment gi|NP_083781.2| AP-3 complex subunit mu-2 [Mus musculus]. 151 1e-36
Alignment gi|NP_084134.2| stonin-1 [Mus musculus]. 61 1e-09
Alignment gi|NP_780576.1| stonin-2 [Mus musculus]. 57 3e-08
>ref|NP_031482.1| AP-1 complex subunit mu-1 [Mus musculus].
Length = 423
Score = 606 bits (1563), Expect = e-174
Identities = 305/316 (96%), Positives = 309/316 (97%)
Frame = +2
Query: 185 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 364
MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI
Sbjct: 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 60
Query: 365 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 544
KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF
Sbjct: 61 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120
Query: 545 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 724
GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIE+VN
Sbjct: 121 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVN 180
Query: 725 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ 904
LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ 240
Query: 905 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHGPH*YMIKAKSQ 1084
CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEK SH YM+KAKSQ
Sbjct: 241 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQ 300
Query: 1085 LQRRSTAKNVEIHLPV 1132
+RRSTA NVEIH+PV
Sbjct: 301 FKRRSTANNVEIHIPV 316
>ref|NP_033808.2| AP-1 complex subunit mu-2 isoform 2 [Mus musculus].
Length = 423
Score = 500 bits (1288), Expect = e-142
Identities = 245/316 (77%), Positives = 286/316 (90%)
Frame = +2
Query: 185 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 364
MSASAV++LD+KGK LI RNY+GDV M+E++HFMP+LM++EEEG+L+P+L+HG V F+WI
Sbjct: 1 MSASAVFILDVKGKPLISRNYKGDVPMTEIDHFMPLLMQREEEGVLAPLLSHGRVHFLWI 60
Query: 365 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 544
KH+NLYLVAT+ KNA SLV+SFLYK V+VF EYFKELEEESIRDNFVI+YELLDELMDF
Sbjct: 61 KHSNLYLVATTLKNANASLVYSFLYKTVEVFCEYFKELEEESIRDNFVIVYELLDELMDF 120
Query: 545 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 724
G+PQTTDSKILQEYITQ+G+KLETG R P TVTNAVSWRSEGIKY+KNEVF+DVIESVN
Sbjct: 121 GFPQTTDSKILQEYITQQGNKLETGKSRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVN 180
Query: 725 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ 904
LLV+ANG+VL SEIVG+IK++VFLSGMPELRLGLND+VLF+ TGR K+KSVELEDVKFHQ
Sbjct: 181 LLVNANGSVLLSEIVGTIKLKVFLSGMPELRLGLNDRVLFELTGRSKNKSVELEDVKFHQ 240
Query: 905 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHGPH*YMIKAKSQ 1084
CVRLSRF+NDRTISFIPPDG+FELMSYRL+T VKPLIWIESVIEK SH M+KAK Q
Sbjct: 241 CVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIESVIEKFSHSRVEIMVKAKGQ 300
Query: 1085 LQRRSTAKNVEIHLPV 1132
+++S A VEI +PV
Sbjct: 301 FKKQSVANGVEISVPV 316
>ref|NP_001103770.1| AP-1 complex subunit mu-2 isoform 1 [Mus musculus].
Length = 425
Score = 493 bits (1268), Expect = e-139
Identities = 244/318 (76%), Positives = 285/318 (89%), Gaps = 2/318 (0%)
Frame = +2
Query: 185 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 364
MSASAV++LD+KGK LI RNY+GDV M+E++HFMP+LM++EEEG+L+P+L+HG V F+WI
Sbjct: 1 MSASAVFILDVKGKPLISRNYKGDVPMTEIDHFMPLLMQREEEGVLAPLLSHGRVHFLWI 60
Query: 365 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 544
KH+NLYLVAT+ KNA SLV+SFLYK V+VF EYFKELEEESIRDNFVI+YELLDELMDF
Sbjct: 61 KHSNLYLVATTLKNANASLVYSFLYKTVEVFCEYFKELEEESIRDNFVIVYELLDELMDF 120
Query: 545 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 724
G+PQTTDSKILQEYITQ+G+KLETG R P TVTNAVSWRSEGIKY+KNEVF+DVIESVN
Sbjct: 121 GFPQTTDSKILQEYITQQGNKLETGKSRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVN 180
Query: 725 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTG--RGKSKSVELEDVKF 898
LLV+ANG+VL SEIVG+IK++VFLSGMPELRLGLND+VLF+ TG K+KSVELEDVKF
Sbjct: 181 LLVNANGSVLLSEIVGTIKLKVFLSGMPELRLGLNDRVLFELTGLSGSKNKSVELEDVKF 240
Query: 899 HQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHGPH*YMIKAK 1078
HQCVRLSRF+NDRTISFIPPDG+FELMSYRL+T VKPLIWIESVIEK SH M+KAK
Sbjct: 241 HQCVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIWIESVIEKFSHSRVEIMVKAK 300
Query: 1079 SQLQRRSTAKNVEIHLPV 1132
Q +++S A VEI +PV
Sbjct: 301 GQFKKQSVANGVEISVPV 318
>ref|NP_033809.1| AP-2 complex subunit mu [Mus musculus].
Length = 435
Score = 254 bits (649), Expect = 9e-68
Identities = 126/322 (39%), Positives = 205/322 (63%), Gaps = 12/322 (3%)
Frame = +2
Query: 200 VYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNL 379
+++ + KG+VLI R YR D+ + V+ F ++ ++ + SP+ F +K +N+
Sbjct: 5 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 63
Query: 380 YLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQT 559
+L A +K+N ++VF FLYK+ V + YF ++ EE+I++NFV+IYELLDE++DFGYPQ
Sbjct: 64 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 123
Query: 560 TDSKILQEYITQEG----HKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVNL 727
+++ L+ +ITQ+G H+ + + + VT + WR EGIKYR+NE+FLDV+ESVNL
Sbjct: 124 SETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNL 183
Query: 728 LVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS--------KSVEL 883
L+S G VL + + G + M+ +LSGMPE + G+NDK++ + G+G + +S+ +
Sbjct: 184 LMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAI 243
Query: 884 EDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHGPH*Y 1063
+D FHQCVRLS+F+++R+ISFIPPDGEFELM YR + + ++ +
Sbjct: 244 DDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEV 303
Query: 1064 MIKAKSQLQRRSTAKNVEIHLP 1129
+ KS + A+ +E+ +P
Sbjct: 304 KVVIKSNFKPSLLAQKIEVRIP 325
>ref|NP_061299.3| AP-3 complex subunit mu-1 [Mus musculus].
Length = 418
Score = 159 bits (401), Expect = 5e-39
Identities = 94/326 (28%), Positives = 167/326 (51%), Gaps = 15/326 (4%)
Frame = +2
Query: 197 AVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNN 376
++++++ G + + ++++ V S ++F + + + P+++ + I +
Sbjct: 4 SLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIYRDK 63
Query: 377 LYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQ 556
L+ V+ + V FL++V F +YF E E +I+DN VI+YELL+E++D G+P
Sbjct: 64 LFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPL 123
Query: 557 TTDSKILQEYI----------TQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLD 706
T+S IL+E I G P ++N + WR G+KY NE + D
Sbjct: 124 ATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSN-IPWRRAGVKYTNNEAYFD 182
Query: 707 VIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELE 886
V+E ++ ++ +G+ + +EI G I + LSGMP+L L + L L+
Sbjct: 183 VVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL-------------LD 229
Query: 887 DVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTH--VKPLIWIESVI---EKASHG 1051
DV FH C+R R+E++R +SFIPPDG F L+SYR+++ V ++++ I E +S G
Sbjct: 230 DVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCG 289
Query: 1052 PH*YMIKAKSQLQRRSTAKNVEIHLP 1129
I K + + V +H+P
Sbjct: 290 RFDITIGPKQNMGKTIEGITVTVHMP 315
>ref|NP_067367.3| AP-4 complex subunit mu-1 [Mus musculus].
Length = 449
Score = 157 bits (398), Expect = 1e-38
Identities = 99/336 (29%), Positives = 172/336 (51%), Gaps = 23/336 (6%)
Frame = +2
Query: 194 SAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHN 373
S ++L KG LI +++RGD +V + G ++ HG F+ I+H+
Sbjct: 3 SQFFILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGGESPVVMYHGDRHFIHIRHS 62
Query: 374 NLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYP 553
LYLVAT+ +N + L ++ + +Y L E +I N ++YELLDE++D+GY
Sbjct: 63 GLYLVATTLENVSPFSLLELLSRLATLLGDYCGSLNEGTISRNVALVYELLDEVLDYGYV 122
Query: 554 QTTDSKILQEYITQE------------------GHKLETGAPRPPATVTNAV-SWRSEGI 676
QTT +++L+ +I E G + + P + + V S RS+
Sbjct: 123 QTTSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQNKVAPSSAASRPVLSSRSD-- 180
Query: 677 KYRKNEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTG 856
+ +KNEVFLDV+E +++L+++NG++L+ ++ G I+++ FL E+ +GL ++ +
Sbjct: 181 QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEICIGLTEEFCVGKSE 240
Query: 857 -RGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVK---PLIWIE 1024
RG + +++V FH V L FE+ R + PP GE +M Y+L+ + P
Sbjct: 241 LRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRLFP 300
Query: 1025 SVIEKASHGPH*YMIKAKSQLQRRSTAKNVEIHLPV 1132
SV G +K + L +S A N+ +HLP+
Sbjct: 301 SVQWDQGSGRLQVYLKLRCDLPPKSQALNIHLHLPL 336
>ref|NP_001116292.1| AP-3 complex subunit mu-2 [Mus musculus].
Length = 418
Score = 151 bits (381), Expect = 1e-36
Identities = 84/282 (29%), Positives = 145/282 (51%), Gaps = 16/282 (5%)
Frame = +2
Query: 197 AVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNN 376
++++++ G + + ++++ V S ++F E + P++ + + +
Sbjct: 4 SLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVYRHK 63
Query: 377 LYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQ 556
++ VA + V FL++VV F +YF E I+DN V++YE+L+E++D G+P
Sbjct: 64 IFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNGFPL 123
Query: 557 TTDSKILQEYI----------------TQEGHKLETGAPRPPATVTNAVSWRSEGIKYRK 688
T+S IL+E I T G +L TG + V WR G+KY
Sbjct: 124 ATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQ-------LSVVPWRRTGVKYTN 176
Query: 689 NEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS 868
NE + DV+E ++ ++ +G+ + +EI G I V L+GMP+L L + L
Sbjct: 177 NEAYFDVVEEIDAIIDKSGSTVTAEIQGVIDACVKLTGMPDLTLSFMNPRL--------- 227
Query: 869 KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLN 994
L+DV FH CVR R+E++R +SFIPPDG F L++Y ++
Sbjct: 228 ----LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLAYHVS 265
>ref|NP_083781.2| AP-3 complex subunit mu-2 [Mus musculus].
Length = 418
Score = 151 bits (381), Expect = 1e-36
Identities = 84/282 (29%), Positives = 145/282 (51%), Gaps = 16/282 (5%)
Frame = +2
Query: 197 AVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNN 376
++++++ G + + ++++ V S ++F E + P++ + + +
Sbjct: 4 SLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVYRHK 63
Query: 377 LYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQ 556
++ VA + V FL++VV F +YF E I+DN V++YE+L+E++D G+P
Sbjct: 64 IFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNGFPL 123
Query: 557 TTDSKILQEYI----------------TQEGHKLETGAPRPPATVTNAVSWRSEGIKYRK 688
T+S IL+E I T G +L TG + V WR G+KY
Sbjct: 124 ATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQ-------LSVVPWRRTGVKYTN 176
Query: 689 NEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS 868
NE + DV+E ++ ++ +G+ + +EI G I V L+GMP+L L + L
Sbjct: 177 NEAYFDVVEEIDAIIDKSGSTVTAEIQGVIDACVKLTGMPDLTLSFMNPRL--------- 227
Query: 869 KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLN 994
L+DV FH CVR R+E++R +SFIPPDG F L++Y ++
Sbjct: 228 ----LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLAYHVS 265
>ref|NP_084134.2| stonin-1 [Mus musculus].
Length = 730
Score = 61.2 bits (147), Expect = 1e-09
Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 7/195 (3%)
Frame = +2
Query: 425 FSFLYKVVQVFSEYFKELEEESIRDNFVIIYEL-LDELMDFGYPQTTDSKILQEYITQEG 601
FS K+ V E+ E+ +++E +++++ G +T+ + E++T
Sbjct: 332 FSMAGKIHTVKVEHVSYSEKRKYHAKTEVVHEPEVEQMLKLG---STEHRDFLEFLTT-- 386
Query: 602 HKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVNLLVSANGNVLRSEIVGSIK 781
+E + PAT + + Y + E+ LD+ +S+ V+ G ++ S +V I
Sbjct: 387 --VEEELIKLPATA------KPKNKSYEEQEICLDIQDSLWGKVTKEGQLVESAVVTQIC 438
Query: 782 MRVFLSGMPELRLGLNDKVLFDNTG-----RGKSKSVELEDVKFHQCVRLSRFENDRTIS 946
FL+G E L LND+ L + K + + D FH CV+ FE R I
Sbjct: 439 CLCFLNGPAECFLALNDRELQKRDECYFEKEPEKKGIAILDYHFHTCVKAEEFEQSRIIK 498
Query: 947 FIPPDG-EFELMSYR 988
F+P D FELM ++
Sbjct: 499 FVPLDACRFELMRFK 513
>ref|NP_780576.1| stonin-2 [Mus musculus].
Length = 895
Score = 56.6 bits (135), Expect = 3e-08
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Frame = +2
Query: 671 GIKYRKNEVFLDVIESVNLLVSANGN-VLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFD 847
G+ Y + E+ +DV + + V N +L+ ++ I + FLSG+ E RLGLND ++
Sbjct: 560 GLNYLEEEITVDVRDEFSGTVGKGDNQILQHHVLTRIHILSFLSGLAECRLGLNDILIKG 619
Query: 848 NTGRGK--------SKSVELEDVKFHQCVRLSRFENDRTISFIPPDG-EFELMSYR 988
N + +K ++L + +FH CV F + R I F P D FELM +R
Sbjct: 620 NEIVSRQDIMPTTTTKWIKLHECRFHGCVDEDVFNSSRVILFNPLDACRFELMRFR 675
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,818,953
Number of extensions: 1043011
Number of successful extensions: 4096
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4074
Number of HSP's successfully gapped: 10
Length of query: 377
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 274
Effective length of database: 12,523,851
Effective search space: 3431535174
Effective search space used: 3431535174
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003311
(1132 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230846.1| adaptor-related protein complex 1, mu 1 subu... 608 e-174
Alignment gi|NP_001230573.1| adaptor-related protein complex 2, mu 1 subu... 252 2e-67
Alignment gi|XP_001929244.3| PREDICTED: AP-3 complex subunit mu-1-like [S... 159 4e-39
Alignment gi|NP_001230445.1| adaptor-related protein complex 3, mu 1 subu... 159 4e-39
Alignment gi|XP_003134277.2| PREDICTED: AP-3 complex subunit mu-2 [Sus sc... 150 2e-36
Alignment gi|XP_003356814.1| PREDICTED: LOW QUALITY PROTEIN: stonin-2-lik... 59 6e-09
>ref|NP_001230846.1| adaptor-related protein complex 1, mu 1 subunit [Sus scrofa].
Length = 423
Score = 608 bits (1567), Expect = e-174
Identities = 307/316 (97%), Positives = 309/316 (97%)
Frame = +2
Query: 185 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 364
MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI
Sbjct: 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 60
Query: 365 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 544
KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF
Sbjct: 61 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120
Query: 545 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 724
GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN
Sbjct: 121 GYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVN 180
Query: 725 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ 904
LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ 240
Query: 905 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHGPH*YMIKAKSQ 1084
CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEK SH YMIKAKSQ
Sbjct: 241 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMIKAKSQ 300
Query: 1085 LQRRSTAKNVEIHLPV 1132
+RRSTA NVEIH+PV
Sbjct: 301 FKRRSTANNVEIHIPV 316
>ref|NP_001230573.1| adaptor-related protein complex 2, mu 1 subunit [Sus scrofa].
Length = 435
Score = 252 bits (644), Expect = 2e-67
Identities = 125/322 (38%), Positives = 204/322 (63%), Gaps = 12/322 (3%)
Frame = +2
Query: 200 VYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNL 379
+++ + KG+VLI R YR D+ + V+ F ++ ++ + SP+ F +K +N+
Sbjct: 5 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHVKRSNI 63
Query: 380 YLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQT 559
+L A +K+N ++VF FLYK+ V + YF ++ EE+I++NFV+IYELLDE++DFGYPQ
Sbjct: 64 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQN 123
Query: 560 TDSKILQEYITQEG----HKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVNL 727
+++ L+ + TQ+G H+ + + + VT + WR EGIKYR+NE+FLDV+ESVNL
Sbjct: 124 SETGALKTFTTQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNL 183
Query: 728 LVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS--------KSVEL 883
L+S G VL + + G + M+ +LSGMPE + G+NDK++ + G+G + +S+ +
Sbjct: 184 LMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGINDKIVIEKQGKGTADETSKSGKQSIAI 243
Query: 884 EDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKASHGPH*Y 1063
+D FHQCVRLS+F+++R+ISFIPPDGEFELM YR + + ++ +
Sbjct: 244 DDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEV 303
Query: 1064 MIKAKSQLQRRSTAKNVEIHLP 1129
+ KS + A+ +E+ +P
Sbjct: 304 KVVIKSNFKPSLLAQKIEVRIP 325
>ref|XP_001929244.3| PREDICTED: AP-3 complex subunit mu-1-like [Sus scrofa].
Length = 418
Score = 159 bits (401), Expect = 4e-39
Identities = 94/326 (28%), Positives = 167/326 (51%), Gaps = 15/326 (4%)
Frame = +2
Query: 197 AVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNN 376
++++++ G + + ++++ V S ++F + + + P+++ + I +
Sbjct: 4 SLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIYRDK 63
Query: 377 LYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQ 556
L+ V+ + V FL++V F +YF E E +I+DN VI+YELL+E++D G+P
Sbjct: 64 LFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPL 123
Query: 557 TTDSKILQEYI----------TQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLD 706
T+S IL+E I G P ++N + WR G+KY NE + D
Sbjct: 124 ATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSN-IPWRRAGVKYTNNEAYFD 182
Query: 707 VIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELE 886
V+E ++ ++ +G+ + +EI G I + LSGMP+L L + L L+
Sbjct: 183 VVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL-------------LD 229
Query: 887 DVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTH--VKPLIWIESVI---EKASHG 1051
DV FH C+R R+E++R +SFIPPDG F L+SYR+++ V ++++ I E +S G
Sbjct: 230 DVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCG 289
Query: 1052 PH*YMIKAKSQLQRRSTAKNVEIHLP 1129
I K + + V +H+P
Sbjct: 290 RFDITIGPKQNMGKTIEGITVTVHMP 315
>ref|NP_001230445.1| adaptor-related protein complex 3, mu 1 subunit [Sus scrofa].
Length = 418
Score = 159 bits (401), Expect = 4e-39
Identities = 94/326 (28%), Positives = 167/326 (51%), Gaps = 15/326 (4%)
Frame = +2
Query: 197 AVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNN 376
++++++ G + + ++++ V S ++F + + + P+++ + I +
Sbjct: 4 SLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIYRDK 63
Query: 377 LYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQ 556
L+ V+ + V FL++V F +YF E E +I+DN VI+YELL+E++D G+P
Sbjct: 64 LFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPL 123
Query: 557 TTDSKILQEYI----------TQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLD 706
T+S IL+E I G P ++N + WR G+KY NE + D
Sbjct: 124 ATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSN-IPWRRAGVKYTNNEAYFD 182
Query: 707 VIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELE 886
V+E ++ ++ +G+ + +EI G I + LSGMP+L L + L L+
Sbjct: 183 VVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRL-------------LD 229
Query: 887 DVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTH--VKPLIWIESVI---EKASHG 1051
DV FH C+R R+E++R +SFIPPDG F L+SYR+++ V ++++ I E +S G
Sbjct: 230 DVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCG 289
Query: 1052 PH*YMIKAKSQLQRRSTAKNVEIHLP 1129
I K + + V +H+P
Sbjct: 290 RFDITIGPKQNMGKTIEGITVTVHMP 315
>ref|XP_003134277.2| PREDICTED: AP-3 complex subunit mu-2 [Sus scrofa].
Length = 268
Score = 150 bits (378), Expect = 2e-36
Identities = 85/282 (30%), Positives = 144/282 (51%), Gaps = 16/282 (5%)
Frame = +2
Query: 197 AVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNN 376
++++++ G + + ++++ V S ++F E + P++ + + +
Sbjct: 4 SLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVYRHK 63
Query: 377 LYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQ 556
++ VA + V FL++VV F +YF E I+DN V++YE+L+E++D G+P
Sbjct: 64 IFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNGFPL 123
Query: 557 TTDSKILQEYI----------------TQEGHKLETGAPRPPATVTNAVSWRSEGIKYRK 688
T+S IL+E I T G +L TG + V WR +KY
Sbjct: 124 ATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQ-------LSVVPWRRTRVKYTN 176
Query: 689 NEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS 868
NE + DVIE ++ ++ +G+ + +EI G I V L+GMP+L L + L
Sbjct: 177 NEAYFDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSFMNPRL--------- 227
Query: 869 KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLN 994
L+DV FH CVR R+E++R +SFIPPDG F L+SY ++
Sbjct: 228 ----LDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVS 265
>ref|XP_003356814.1| PREDICTED: LOW QUALITY PROTEIN: stonin-2-like [Sus scrofa].
Length = 895
Score = 58.5 bits (140), Expect = 6e-09
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 10/116 (8%)
Frame = +2
Query: 671 GIKYRKNEVFLDVIESVNLLVSANGN-VLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFD 847
G+ Y + E+ +DV + + LVS N +L+ ++ I + FLSG+ E RLGLND ++
Sbjct: 560 GLNYLEEEITVDVRDEFSGLVSKGDNQILQHCVLTRIHILSFLSGLAECRLGLNDVLVKG 619
Query: 848 NTGRGK--------SKSVELEDVKFHQCVRLSRFENDRTISFIPPDG-EFELMSYR 988
N + +K ++L + +FH CV F + R I F P D FELM +R
Sbjct: 620 NEIVSRQDIMPTTTTKWIKLHECRFHGCVDEDVFNSSRVILFNPLDACRFELMRFR 675
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,336,116
Number of extensions: 805553
Number of successful extensions: 3614
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3598
Number of HSP's successfully gapped: 6
Length of query: 377
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 276
Effective length of database: 8,829,335
Effective search space: 2436896460
Effective search space used: 2436896460
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003311
(1132 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 446 e-122
>Sscrofa_Chr02
|| Length = 162569375
Score = 446 bits (225), Expect = e-122
Identities = 225/225 (100%)
Strand = Plus / Minus
Query: 4 catggcgccttgcgcctgcgctttggcagcgcgtccacggccagacctaacggtccgcgc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61018448 catggcgccttgcgcctgcgctttggcagcgcgtccacggccagacctaacggtccgcgc 61018389
Query: 64 gctactccccgggccggaagtggagaggaactgtctcgggtgcgcccggcctggctcacc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61018388 gctactccccgggccggaagtggagaggaactgtctcgggtgcgcccggcctggctcacc 61018329
Query: 124 gcctggcagtcaccgctgtcgccgccgccttcggccagtgccgagggtttttgcagccgc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61018328 gcctggcagtcaccgctgtcgccgccgccttcggccagtgccgagggtttttgcagccgc 61018269
Query: 184 catgtccgccagtgccgtctacgtgctggacctgaagggcaaggt 228
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61018268 catgtccgccagtgccgtctacgtgctggacctgaagggcaaggt 61018224
Score = 315 bits (159), Expect = 3e-83
Identities = 159/159 (100%)
Strand = Plus / Minus
Query: 225 aggtgctcatctgccggaactaccgcggtgatgtggacatgtcggaggtggagcacttca 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61012707 aggtgctcatctgccggaactaccgcggtgatgtggacatgtcggaggtggagcacttca 61012648
Query: 285 tgcccatcctgatggagaaggaggaggaagggatgctgtcacccatcctggcccacgggg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61012647 tgcccatcctgatggagaaggaggaggaagggatgctgtcacccatcctggcccacgggg 61012588
Query: 345 gcgtccgctttatgtggatcaagcataacaacctgtatc 383
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61012587 gcgtccgctttatgtggatcaagcataacaacctgtatc 61012549
Score = 297 bits (150), Expect = 7e-78
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 583 gtacatcactcaggaaggccacaagctggaaacaggggccccaaggcccccagccaccgt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61006881 gtacatcactcaggaaggccacaagctggaaacaggggccccaaggcccccagccaccgt 61006822
Query: 643 caccaacgcagtgtcctggcgctccgagggcatcaaataccggaagaatgaggtgttctt 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61006821 caccaacgcagtgtcctggcgctccgagggcatcaaataccggaagaatgaggtgttctt 61006762
Query: 703 ggacgtcatcgagtctgtcaacctcctggt 732
||||||||||||||||||||||||||||||
Sbjct: 61006761 ggacgtcatcgagtctgtcaacctcctggt 61006732
Score = 287 bits (145), Expect = 7e-75
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 858 gcggcaaaagcaagtccgtggagctggaggatgtgaagttccaccagtgcgtacggctct 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60998062 gcggcaaaagcaagtccgtggagctggaggatgtgaagttccaccagtgcgtacggctct 60998003
Query: 918 cacgctttgagaatgaccgcaccatctccttcatcccacccgatggcgaattcgagctca 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60998002 cacgctttgagaatgaccgcaccatctccttcatcccacccgatggcgaattcgagctca 60997943
Query: 978 tgtcttaccgcctcaacacccacgt 1002
|||||||||||||||||||||||||
Sbjct: 60997942 tgtcttaccgcctcaacacccacgt 60997918
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 448 gcaggtgttttcggaatatttcaaggagctggaggaggagagcatccgcgacaacttcgt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61008426 gcaggtgttttcggaatatttcaaggagctggaggaggagagcatccgcgacaacttcgt 61008367
Query: 508 catcatctacgagctgctggatgagctcatggacttcggctacccccagaccacagacag 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61008366 catcatctacgagctgctggatgagctcatggacttcggctacccccagaccacagacag 61008307
Query: 568 caagatcctgcaggagt 584
|||||||||||||||||
Sbjct: 61008306 caagatcctgcaggagt 61008290
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 730 ggtcagtgccaacggtaatgtcctgcgcagtgagattgtgggctccatcaagatgcgggt 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60999142 ggtcagtgccaacggtaatgtcctgcgcagtgagattgtgggctccatcaagatgcgggt 60999083
Query: 790 cttcctgtcgggtatgccggaactgcgcctgggcctcaatgacaaggtcctcttcgacaa 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60999082 cttcctgtcgggtatgccggaactgcgcctgggcctcaatgacaaggtcctcttcgacaa 60999023
Query: 850 cacaggccg 858
|||||||||
Sbjct: 60999022 cacaggccg 60999014
Score = 168 bits (85), Expect = 4e-39
Identities = 115/125 (92%)
Strand = Plus / Plus
Query: 868 caagtccgtggagctggaggatgtgaagttccaccagtgcgtacggctctcacgctttga 927
|||||||||||| || ||||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 69751886 caagtccgtggaactagaggatgtgaagttccaccagtgtgtgcggctctctcgctttga 69751945
Query: 928 gaatgaccgcaccatctccttcatcccacccgatggcgaattcgagctcatgtcttaccg 987
||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct: 69751946 caatgaccgcaccatctccttcatcccacccgatggtgacttcgagctcatgtcctaccg 69752005
Query: 988 cctca 992
||||
Sbjct: 69752006 actca 69752010
Score = 161 bits (81), Expect = 1e-36
Identities = 114/125 (91%)
Strand = Plus / Plus
Query: 461 gaatatttcaaggagctggaggaggagagcatccgcgacaacttcgtcatcatctacgag 520
||||| ||||||||||||||||||||||| ||| | |||||||| || ||||||||||||
Sbjct: 69750819 gaatacttcaaggagctggaggaggagagtatcagagacaactttgttatcatctacgag 69750878
Query: 521 ctgctggatgagctcatggacttcggctacccccagaccacagacagcaagatcctgcag 580
||||| ||||||||||||||||| |||| |||||||||||| |||||||| |||||||||
Sbjct: 69750879 ctgctagatgagctcatggactttggcttcccccagaccaccgacagcaaaatcctgcag 69750938
Query: 581 gagta 585
|||||
Sbjct: 69750939 gagta 69750943
Score = 141 bits (71), Expect = 9e-31
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 384 tggtcgccacctccaagaagaacgcgtgtgtgtcattggtgttctccttcctctataagg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61010151 tggtcgccacctccaagaagaacgcgtgtgtgtcattggtgttctccttcctctataagg 61010092
Query: 444 tggtgcaggtg 454
|||||||||||
Sbjct: 61010091 tggtgcaggtg 61010081
Score = 83.8 bits (42), Expect = 2e-13
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 1071 aggcaaagagccaacttcagcgacggtcaacagccaaaaacgtggaaatccacttacccg 1130
|||||||||||||| | ||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 60996784 aggcaaagagccaattcaagcgacggtcaacagccaacaacgtggaaatccacatacccg 60996725
Query: 1131 tg 1132
||
Sbjct: 60996724 tg 60996723
Score = 77.8 bits (39), Expect = 1e-11
Identities = 70/75 (93%), Gaps = 4/75 (5%)
Strand = Plus / Minus
Query: 1001 gtcaagcccttgatctggattgagtctgtgattgaaaaagca-tcccacggcccgcattg 1059
|||||||||||||||||||||||||||||||||| ||||||| |||||| | ||||||||
Sbjct: 60997450 gtcaagcccttgatctggattgagtctgtgattg-aaaagcattcccacag-ccgcattg 60997393
Query: 1060 -atacatgatcaagg 1073
||||||||||||||
Sbjct: 60997392 aatacatgatcaagg 60997378
Score = 65.9 bits (33), Expect = 4e-08
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 636 ccaccgtcaccaacgcagtgtcctggcgctccgagggcatcaaataccggaagaatgagg 695
|||| |||||||| || |||||||||||||| |||||||| || ||| |||||| ||||
Sbjct: 69751094 ccactgtcaccaatgctgtgtcctggcgctcagagggcataaagtacaagaagaacgagg 69751153
Query: 696 tgttcttggacgtcatcgagtctgtcaacctcctggt 732
| ||| | || ||||| ||||| |||||||| |||||
Sbjct: 69751154 tcttcatcgatgtcatagagtcagtcaacctactggt 69751190
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,724,684
Number of extensions: 197
Number of successful extensions: 197
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 12
Length of query: 1132
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1111
Effective length of database: 2,808,413,156
Effective search space: 3120147016316
Effective search space used: 3120147016316
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)