Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003316
(954 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098808.1| arginyl-tRNA synthetase, cytoplasmic [Bos ta... 484 e-142
Alignment gi|NP_001069346.1| probable arginyl-tRNA synthetase, mitochondr... 84 2e-16
>ref|NP_001098808.1| arginyl-tRNA synthetase, cytoplasmic [Bos taurus].
Length = 660
Score = 484 bits (1247), Expect(2) = e-142
Identities = 243/287 (84%), Positives = 258/287 (89%)
Frame = +1
Query: 31 MDGLVAACSARLLQQEKEIKFLTAEIDRLKNCSCSEASSXXXXXXXXXXXXXXXXNILQK 210
MD LVA CSARLLQQEKEIKFLTAE+DRLKN SCSEAS+ NIL+K
Sbjct: 1 MDALVAHCSARLLQQEKEIKFLTAEVDRLKNYSCSEASADLEKLREENLKLKYRLNILRK 60
Query: 211 SLQAERNKPSKNMINIISGLQEVFGCAIKAAYPDLENPPLIVTPSQQPKFGDYQCNSAMG 390
SLQAERNKP+K MINI S L+EVFGCAIKAAYP LENPPLIVTPSQQPKFGDYQCNSAMG
Sbjct: 61 SLQAERNKPTKTMININSCLEEVFGCAIKAAYPVLENPPLIVTPSQQPKFGDYQCNSAMG 120
Query: 391 ISQMLKTKEQKVNPREIAENITKNLPDNEYIEKVEIAGPGFINIHLKKSFVSQQLTNLLV 570
I QMLKTKEQKVNPREIAENI K+LPDNEYIEKVEIAGPGFINIHL+K FVSQQLTNLLV
Sbjct: 121 ICQMLKTKEQKVNPREIAENIVKHLPDNEYIEKVEIAGPGFINIHLRKGFVSQQLTNLLV 180
Query: 571 NGVQLPAIGANKKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRINHVGD 750
NGV++P+IG NKKVIVDFSSPNIAKEMHVGHLRSTIIGESM RLFEFAGY+VLR+NHVGD
Sbjct: 181 NGVKIPSIGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESMCRLFEFAGYNVLRLNHVGD 240
Query: 751 WGTQFGMLIAHLQDKFPDYLRVSPPIGDLQAFYRESKERFDTEEEFR 891
WGTQFGMLIAHLQDKFPDYL VSPPIGDLQAFY+ESK+RFDTEEEF+
Sbjct: 241 WGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFK 287
Score = 41.2 bits (95), Expect(2) = e-142
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = +3
Query: 891 KRAYQCVVLLQK*NPDIFKAW 953
KRAYQCVVLLQ NPDI KAW
Sbjct: 288 KRAYQCVVLLQSKNPDIIKAW 308
>ref|NP_001069346.1| probable arginyl-tRNA synthetase, mitochondrial precursor [Bos
taurus].
Length = 578
Score = 84.0 bits (206), Expect = 2e-16
Identities = 54/194 (27%), Positives = 101/194 (52%), Gaps = 10/194 (5%)
Frame = +1
Query: 343 SQQPKFGDYQCNSAMGISQMLKTKEQKVNP--REIAENITKNLPDNEYIEKVEIAGPGFI 516
S++ + D+Q + + +L+ P + A + + L + + ++ G G +
Sbjct: 34 SRKEEVADFQ----LSVDSLLENNNDHSRPDIQIQAMRLAEKLKCDTVVSEIS-TGQGTV 88
Query: 517 NIHLKKSFVSQQLTNLLVN-----GVQLPAIGA--NKKVIVDFSSPNIAKEMHVGHLRST 675
N + + +++ + ++ G++ K+++V+FSSPN+AK+ HVGHLRST
Sbjct: 89 NFKINRELLTKTVLQQVIEDGSKYGLKSELFSGLPKKRIVVEFSSPNVAKKFHVGHLRST 148
Query: 676 IIGESMSRLFEFAGYDVLRINHVGDWGTQFGMLIAHLQ-DKFPDYLRVSPPIGDLQAFYR 852
IIG ++ L E G+ V RIN++GDWG QFG+L Q + + L+ SP + + +
Sbjct: 149 IIGNFIANLKEALGHQVTRINYLGDWGMQFGLLGTGFQLFGYEEKLQSSPLQHLFEVYVQ 208
Query: 853 ESKERFDTEEEFRS 894
+KE D + +S
Sbjct: 209 VNKEAADDKNVAKS 222
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,799,293
Number of extensions: 747862
Number of successful extensions: 1880
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1876
Number of HSP's successfully gapped: 3
Length of query: 318
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 216
Effective length of database: 14,306,398
Effective search space: 3090181968
Effective search space used: 3090181968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003316
(954 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866915.1| PREDICTED: similar to arginyl-tRNA synthetase i... 484 e-142
Alignment gi|XP_866928.1| PREDICTED: similar to arginyl-tRNA synthetase i... 484 e-142
Alignment gi|XP_853102.1| PREDICTED: similar to arginyl-tRNA synthetase i... 484 e-142
Alignment gi|XP_866938.1| PREDICTED: similar to arginyl-tRNA synthetase i... 310 4e-90
Alignment gi|XP_867850.1| PREDICTED: similar to arginyl-tRNA synthetase-l... 87 2e-17
Alignment gi|XP_539032.2| PREDICTED: similar to arginyl-tRNA synthetase-l... 87 2e-17
>ref|XP_866915.1| PREDICTED: similar to arginyl-tRNA synthetase isoform 2 [Canis
familiaris].
Length = 692
Score = 484 bits (1247), Expect(2) = e-142
Identities = 241/287 (83%), Positives = 256/287 (89%)
Frame = +1
Query: 31 MDGLVAACSARLLQQEKEIKFLTAEIDRLKNCSCSEASSXXXXXXXXXXXXXXXXNILQK 210
M+GLVA CSARLLQQEKEIK LTAEIDRLKNC C E S IL+K
Sbjct: 1 MEGLVAQCSARLLQQEKEIKSLTAEIDRLKNCGCLEDSPDLEQLREENLKLKYRLKILRK 60
Query: 211 SLQAERNKPSKNMINIISGLQEVFGCAIKAAYPDLENPPLIVTPSQQPKFGDYQCNSAMG 390
SLQAER +P+KNMINI S LQEVFGCAIKAAYPDLENPPLIVTPSQQPKFGDYQCNSAMG
Sbjct: 61 SLQAERTRPTKNMININSRLQEVFGCAIKAAYPDLENPPLIVTPSQQPKFGDYQCNSAMG 120
Query: 391 ISQMLKTKEQKVNPREIAENITKNLPDNEYIEKVEIAGPGFINIHLKKSFVSQQLTNLLV 570
ISQMLKTKEQKVNPREIAENITK+LPDNE +E+VEIAGPGFIN+HL+K FVSQQLTNLLV
Sbjct: 121 ISQMLKTKEQKVNPREIAENITKHLPDNECVERVEIAGPGFINVHLRKDFVSQQLTNLLV 180
Query: 571 NGVQLPAIGANKKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRINHVGD 750
NGVQLPA+G NKKV+VDFSSPNIAKEMHVGHLRSTIIGESM RLFEFAGYDVLR+NHVGD
Sbjct: 181 NGVQLPALGENKKVVVDFSSPNIAKEMHVGHLRSTIIGESMCRLFEFAGYDVLRLNHVGD 240
Query: 751 WGTQFGMLIAHLQDKFPDYLRVSPPIGDLQAFYRESKERFDTEEEFR 891
WGTQFGMLIAHLQDKFPDYL VSPPIGDLQAFY+ESK+RFDTEEEF+
Sbjct: 241 WGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFK 287
Score = 41.2 bits (95), Expect(2) = e-142
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = +3
Query: 891 KRAYQCVVLLQK*NPDIFKAW 953
KRAYQCVVLLQ NPDI KAW
Sbjct: 288 KRAYQCVVLLQSKNPDIIKAW 308
>ref|XP_866928.1| PREDICTED: similar to arginyl-tRNA synthetase isoform 3 [Canis
familiaris].
Length = 662
Score = 484 bits (1247), Expect(2) = e-142
Identities = 241/287 (83%), Positives = 256/287 (89%)
Frame = +1
Query: 31 MDGLVAACSARLLQQEKEIKFLTAEIDRLKNCSCSEASSXXXXXXXXXXXXXXXXNILQK 210
M+GLVA CSARLLQQEKEIK LTAEIDRLKNC C E S IL+K
Sbjct: 1 MEGLVAQCSARLLQQEKEIKSLTAEIDRLKNCGCLEDSPDLEQLREENLKLKYRLKILRK 60
Query: 211 SLQAERNKPSKNMINIISGLQEVFGCAIKAAYPDLENPPLIVTPSQQPKFGDYQCNSAMG 390
SLQAER +P+KNMINI S LQEVFGCAIKAAYPDLENPPLIVTPSQQPKFGDYQCNSAMG
Sbjct: 61 SLQAERTRPTKNMININSRLQEVFGCAIKAAYPDLENPPLIVTPSQQPKFGDYQCNSAMG 120
Query: 391 ISQMLKTKEQKVNPREIAENITKNLPDNEYIEKVEIAGPGFINIHLKKSFVSQQLTNLLV 570
ISQMLKTKEQKVNPREIAENITK+LPDNE +E+VEIAGPGFIN+HL+K FVSQQLTNLLV
Sbjct: 121 ISQMLKTKEQKVNPREIAENITKHLPDNECVERVEIAGPGFINVHLRKDFVSQQLTNLLV 180
Query: 571 NGVQLPAIGANKKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRINHVGD 750
NGVQLPA+G NKKV+VDFSSPNIAKEMHVGHLRSTIIGESM RLFEFAGYDVLR+NHVGD
Sbjct: 181 NGVQLPALGENKKVVVDFSSPNIAKEMHVGHLRSTIIGESMCRLFEFAGYDVLRLNHVGD 240
Query: 751 WGTQFGMLIAHLQDKFPDYLRVSPPIGDLQAFYRESKERFDTEEEFR 891
WGTQFGMLIAHLQDKFPDYL VSPPIGDLQAFY+ESK+RFDTEEEF+
Sbjct: 241 WGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFK 287
Score = 41.2 bits (95), Expect(2) = e-142
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = +3
Query: 891 KRAYQCVVLLQK*NPDIFKAW 953
KRAYQCVVLLQ NPDI KAW
Sbjct: 288 KRAYQCVVLLQSKNPDIIKAW 308
>ref|XP_853102.1| PREDICTED: similar to arginyl-tRNA synthetase isoform 1 [Canis
familiaris].
Length = 660
Score = 484 bits (1247), Expect(2) = e-142
Identities = 241/287 (83%), Positives = 256/287 (89%)
Frame = +1
Query: 31 MDGLVAACSARLLQQEKEIKFLTAEIDRLKNCSCSEASSXXXXXXXXXXXXXXXXNILQK 210
M+GLVA CSARLLQQEKEIK LTAEIDRLKNC C E S IL+K
Sbjct: 1 MEGLVAQCSARLLQQEKEIKSLTAEIDRLKNCGCLEDSPDLEQLREENLKLKYRLKILRK 60
Query: 211 SLQAERNKPSKNMINIISGLQEVFGCAIKAAYPDLENPPLIVTPSQQPKFGDYQCNSAMG 390
SLQAER +P+KNMINI S LQEVFGCAIKAAYPDLENPPLIVTPSQQPKFGDYQCNSAMG
Sbjct: 61 SLQAERTRPTKNMININSRLQEVFGCAIKAAYPDLENPPLIVTPSQQPKFGDYQCNSAMG 120
Query: 391 ISQMLKTKEQKVNPREIAENITKNLPDNEYIEKVEIAGPGFINIHLKKSFVSQQLTNLLV 570
ISQMLKTKEQKVNPREIAENITK+LPDNE +E+VEIAGPGFIN+HL+K FVSQQLTNLLV
Sbjct: 121 ISQMLKTKEQKVNPREIAENITKHLPDNECVERVEIAGPGFINVHLRKDFVSQQLTNLLV 180
Query: 571 NGVQLPAIGANKKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRINHVGD 750
NGVQLPA+G NKKV+VDFSSPNIAKEMHVGHLRSTIIGESM RLFEFAGYDVLR+NHVGD
Sbjct: 181 NGVQLPALGENKKVVVDFSSPNIAKEMHVGHLRSTIIGESMCRLFEFAGYDVLRLNHVGD 240
Query: 751 WGTQFGMLIAHLQDKFPDYLRVSPPIGDLQAFYRESKERFDTEEEFR 891
WGTQFGMLIAHLQDKFPDYL VSPPIGDLQAFY+ESK+RFDTEEEF+
Sbjct: 241 WGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFK 287
Score = 41.2 bits (95), Expect(2) = e-142
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = +3
Query: 891 KRAYQCVVLLQK*NPDIFKAW 953
KRAYQCVVLLQ NPDI KAW
Sbjct: 288 KRAYQCVVLLQSKNPDIIKAW 308
>ref|XP_866938.1| PREDICTED: similar to arginyl-tRNA synthetase isoform 4 [Canis
familiaris].
Length = 597
Score = 310 bits (793), Expect(2) = 4e-90
Identities = 148/167 (88%), Positives = 161/167 (96%)
Frame = +1
Query: 391 ISQMLKTKEQKVNPREIAENITKNLPDNEYIEKVEIAGPGFINIHLKKSFVSQQLTNLLV 570
+ +MLKTKEQKVNPREIAENITK+LPDNE +E+VEIAGPGFIN+HL+K FVSQQLTNLLV
Sbjct: 58 LRKMLKTKEQKVNPREIAENITKHLPDNECVERVEIAGPGFINVHLRKDFVSQQLTNLLV 117
Query: 571 NGVQLPAIGANKKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRINHVGD 750
NGVQLPA+G NKKV+VDFSSPNIAKEMHVGHLRSTIIGESM RLFEFAGYDVLR+NHVGD
Sbjct: 118 NGVQLPALGENKKVVVDFSSPNIAKEMHVGHLRSTIIGESMCRLFEFAGYDVLRLNHVGD 177
Query: 751 WGTQFGMLIAHLQDKFPDYLRVSPPIGDLQAFYRESKERFDTEEEFR 891
WGTQFGMLIAHLQDKFPDYL VSPPIGDLQAFY+ESK+RFDTEEEF+
Sbjct: 178 WGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFK 224
Score = 41.2 bits (95), Expect(2) = 4e-90
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = +3
Query: 891 KRAYQCVVLLQK*NPDIFKAW 953
KRAYQCVVLLQ NPDI KAW
Sbjct: 225 KRAYQCVVLLQSKNPDIIKAW 245
Score = 67.8 bits (164), Expect = 1e-11
Identities = 37/68 (54%), Positives = 41/68 (60%)
Frame = +1
Query: 31 MDGLVAACSARLLQQEKEIKFLTAEIDRLKNCSCSEASSXXXXXXXXXXXXXXXXNILQK 210
M+GLVA CSARLLQQEKEIK LTAEIDRLKNC C E S IL+K
Sbjct: 1 MEGLVAQCSARLLQQEKEIKSLTAEIDRLKNCGCLEDSPDLEQLREENLKLKYRLKILRK 60
Query: 211 SLQAERNK 234
L+ + K
Sbjct: 61 MLKTKEQK 68
>ref|XP_867850.1| PREDICTED: similar to arginyl-tRNA synthetase-like isoform 2 [Canis
familiaris].
Length = 421
Score = 87.0 bits (214), Expect = 2e-17
Identities = 56/194 (28%), Positives = 101/194 (52%), Gaps = 10/194 (5%)
Frame = +1
Query: 343 SQQPKFGDYQCNSAMGISQMLKTKEQKVNP--REIAENITKNLPDNEYIEKVEIAGPGFI 516
S++ + D+Q + + +L+ P + A + + L + + ++ G G +
Sbjct: 34 SRKEEVADFQ----LSVDSLLENNNDHSRPDTQVQARKLAEKLKCDSVVSEIS-TGQGTV 88
Query: 517 NIHLKKSFVSQQLTNLLVN-----GVQLPAIGA--NKKVIVDFSSPNIAKEMHVGHLRST 675
N + + +++ + ++ G++ KK++V+FSSPNIAK+ HVGHLRST
Sbjct: 89 NFKINRELLTKTVLQQVIKDGSKYGLKSELFSGLPQKKIVVEFSSPNIAKKFHVGHLRST 148
Query: 676 IIGESMSRLFEFAGYDVLRINHVGDWGTQFGMLIAHLQ-DKFPDYLRVSPPIGDLQAFYR 852
IIG ++ L E G+ V RIN++GDWG QFG+L Q + + L+ SP + + +
Sbjct: 149 IIGNFIANLKEALGHQVTRINYLGDWGMQFGLLGTGFQLFGYEEKLQSSPLQHLFEVYVQ 208
Query: 853 ESKERFDTEEEFRS 894
+KE D + +S
Sbjct: 209 VNKEAADDKNVAKS 222
>ref|XP_539032.2| PREDICTED: similar to arginyl-tRNA synthetase-like isoform 1 [Canis
familiaris].
Length = 578
Score = 87.0 bits (214), Expect = 2e-17
Identities = 56/194 (28%), Positives = 101/194 (52%), Gaps = 10/194 (5%)
Frame = +1
Query: 343 SQQPKFGDYQCNSAMGISQMLKTKEQKVNP--REIAENITKNLPDNEYIEKVEIAGPGFI 516
S++ + D+Q + + +L+ P + A + + L + + ++ G G +
Sbjct: 34 SRKEEVADFQ----LSVDSLLENNNDHSRPDTQVQARKLAEKLKCDSVVSEIS-TGQGTV 88
Query: 517 NIHLKKSFVSQQLTNLLVN-----GVQLPAIGA--NKKVIVDFSSPNIAKEMHVGHLRST 675
N + + +++ + ++ G++ KK++V+FSSPNIAK+ HVGHLRST
Sbjct: 89 NFKINRELLTKTVLQQVIKDGSKYGLKSELFSGLPQKKIVVEFSSPNIAKKFHVGHLRST 148
Query: 676 IIGESMSRLFEFAGYDVLRINHVGDWGTQFGMLIAHLQ-DKFPDYLRVSPPIGDLQAFYR 852
IIG ++ L E G+ V RIN++GDWG QFG+L Q + + L+ SP + + +
Sbjct: 149 IIGNFIANLKEALGHQVTRINYLGDWGMQFGLLGTGFQLFGYEEKLQSSPLQHLFEVYVQ 208
Query: 853 ESKERFDTEEEFRS 894
+KE D + +S
Sbjct: 209 VNKEAADDKNVAKS 222
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,319,410
Number of extensions: 777651
Number of successful extensions: 2077
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2074
Number of HSP's successfully gapped: 11
Length of query: 318
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 215
Effective length of database: 15,440,896
Effective search space: 3319792640
Effective search space used: 3319792640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003316
(954 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002878.2| arginyl-tRNA synthetase, cytoplasmic [Homo sapi... 477 e-140
Alignment gi|NP_064716.2| probable arginyl-tRNA synthetase, mitochondrial... 84 1e-16
>ref|NP_002878.2| arginyl-tRNA synthetase, cytoplasmic [Homo sapiens].
Length = 660
Score = 477 bits (1228), Expect(2) = e-140
Identities = 240/287 (83%), Positives = 256/287 (89%)
Frame = +1
Query: 31 MDGLVAACSARLLQQEKEIKFLTAEIDRLKNCSCSEASSXXXXXXXXXXXXXXXXNILQK 210
MD LV+ CSARLLQQE+EIK LTAEIDRLKNC C AS NIL+K
Sbjct: 1 MDVLVSECSARLLQQEEEIKSLTAEIDRLKNCGCLGASPNLEQLQEENLKLKYRLNILRK 60
Query: 211 SLQAERNKPSKNMINIISGLQEVFGCAIKAAYPDLENPPLIVTPSQQPKFGDYQCNSAMG 390
SLQAERNKP+KNMINIIS LQEVFG AIKAAYPDLENPPL+VTPSQQ KFGDYQCNSAMG
Sbjct: 61 SLQAERNKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQAKFGDYQCNSAMG 120
Query: 391 ISQMLKTKEQKVNPREIAENITKNLPDNEYIEKVEIAGPGFINIHLKKSFVSQQLTNLLV 570
ISQMLKTKEQKVNPREIAENITK+LPDNE IEKVEIAGPGFIN+HL+K FVS+QLT+LLV
Sbjct: 121 ISQMLKTKEQKVNPREIAENITKHLPDNECIEKVEIAGPGFINVHLRKDFVSEQLTSLLV 180
Query: 571 NGVQLPAIGANKKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRINHVGD 750
NGVQLPA+G NKKVIVDFSSPNIAKEMHVGHLRSTIIGES+SRLFEFAGYDVLR+NHVGD
Sbjct: 181 NGVQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFAGYDVLRLNHVGD 240
Query: 751 WGTQFGMLIAHLQDKFPDYLRVSPPIGDLQAFYRESKERFDTEEEFR 891
WGTQFGMLIAHLQDKFPDYL VSPPIGDLQ FY+ESK+RFDTEEEF+
Sbjct: 241 WGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFYKESKKRFDTEEEFK 287
Score = 39.7 bits (91), Expect(2) = e-140
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = +3
Query: 891 KRAYQCVVLLQK*NPDIFKAW 953
KRAYQCVVLLQ NPDI KAW
Sbjct: 288 KRAYQCVVLLQGKNPDITKAW 308
>ref|NP_064716.2| probable arginyl-tRNA synthetase, mitochondrial precursor [Homo
sapiens].
Length = 578
Score = 84.3 bits (207), Expect = 1e-16
Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 14/107 (13%)
Frame = +1
Query: 604 KKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRINHVGDWGTQFGML--- 774
KK++V+FSSPN+AK+ HVGHLRSTIIG ++ L E G+ V+RIN++GDWG QFG+L
Sbjct: 125 KKIVVEFSSPNVAKKFHVGHLRSTIIGNFIANLKEALGHQVIRINYLGDWGMQFGLLGTG 184
Query: 775 -----------IAHLQDKFPDYLRVSPPIGDLQAFYRESKERFDTEE 882
LQ F Y++V+ D ++ + ++E F E
Sbjct: 185 FQLFGYEEKLQSNPLQHLFEVYVQVNKEAADDKSVAKAAQEFFQRLE 231
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,709,472
Number of extensions: 768997
Number of successful extensions: 2088
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2087
Number of HSP's successfully gapped: 3
Length of query: 318
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 215
Effective length of database: 14,901,872
Effective search space: 3203902480
Effective search space used: 3203902480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003316
(954 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080212.2| arginyl-tRNA synthetase, cytoplasmic [Mus muscu... 473 e-139
Alignment gi|NP_852071.2| probable arginyl-tRNA synthetase, mitochondrial... 86 3e-17
>ref|NP_080212.2| arginyl-tRNA synthetase, cytoplasmic [Mus musculus].
Length = 660
Score = 473 bits (1218), Expect(2) = e-139
Identities = 234/287 (81%), Positives = 255/287 (88%)
Frame = +1
Query: 31 MDGLVAACSARLLQQEKEIKFLTAEIDRLKNCSCSEASSXXXXXXXXXXXXXXXXNILQK 210
MDGLVA CSARLLQQE+EIK LTAEIDRLKNC C EAS NIL++
Sbjct: 1 MDGLVAQCSARLLQQEREIKALTAEIDRLKNCGCLEASPSLEQLREENLKLKYRLNILRR 60
Query: 211 SLQAERNKPSKNMINIISGLQEVFGCAIKAAYPDLENPPLIVTPSQQPKFGDYQCNSAMG 390
SLQ ER KP+KNMINI S LQEVFGCAI+AAYPDLENPPLIVTPSQQPKFGDYQCNSAMG
Sbjct: 61 SLQEERRKPTKNMININSRLQEVFGCAIRAAYPDLENPPLIVTPSQQPKFGDYQCNSAMG 120
Query: 391 ISQMLKTKEQKVNPREIAENITKNLPDNEYIEKVEIAGPGFINIHLKKSFVSQQLTNLLV 570
ISQMLK KEQKV+PREIAENITK+LP+N+YI+KVEIAGPGFIN+HL+K FVS+QLT+LLV
Sbjct: 121 ISQMLKAKEQKVSPREIAENITKHLPNNKYIDKVEIAGPGFINVHLRKDFVSEQLTSLLV 180
Query: 571 NGVQLPAIGANKKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRINHVGD 750
NGVQLP +G +KVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLR+NHVGD
Sbjct: 181 NGVQLPVLGDKEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRLNHVGD 240
Query: 751 WGTQFGMLIAHLQDKFPDYLRVSPPIGDLQAFYRESKERFDTEEEFR 891
WGTQFGMLIAHLQDKFPDYL VSPPIGDLQAFY+ESK+RFD +EEF+
Sbjct: 241 WGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDADEEFK 287
Score = 41.2 bits (95), Expect(2) = e-139
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = +3
Query: 891 KRAYQCVVLLQK*NPDIFKAW 953
KRAYQCVVLLQ NPDI KAW
Sbjct: 288 KRAYQCVVLLQSKNPDIMKAW 308
>ref|NP_852071.2| probable arginyl-tRNA synthetase, mitochondrial precursor [Mus
musculus].
Length = 578
Score = 86.3 bits (212), Expect = 3e-17
Identities = 50/156 (32%), Positives = 87/156 (55%), Gaps = 9/156 (5%)
Frame = +1
Query: 334 VTPSQQPKFGDYQCNSAMGISQMLKTKEQK--VNPREIAENITKNLPDNEYIEKVEIAGP 507
V S++ + D+Q + + +L+ K V+ ++ A + + L + + + AGP
Sbjct: 31 VPVSKKEEVADFQ----LSVDSLLEDNNHKSQVDTQDQARRLAEKLKCDTVVTAIS-AGP 85
Query: 508 GFINIHLKKSFVSQQLTNLLVNG-------VQLPAIGANKKVIVDFSSPNIAKEMHVGHL 666
+N + + +++ + + +L + K+++V+FSSPNIAK+ HVGHL
Sbjct: 86 RTLNFKINRELLTKAVLQQVTEDGCKYGLKSELFSDLPKKRIVVEFSSPNIAKKFHVGHL 145
Query: 667 RSTIIGESMSRLFEFAGYDVLRINHVGDWGTQFGML 774
RSTIIG ++ L E G+ V RIN++GDWG QFG+L
Sbjct: 146 RSTIIGNFIANLKEALGHQVTRINYIGDWGMQFGLL 181
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,933,426
Number of extensions: 654343
Number of successful extensions: 1792
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1791
Number of HSP's successfully gapped: 3
Length of query: 318
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 217
Effective length of database: 12,583,923
Effective search space: 2730711291
Effective search space used: 2730711291
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003316
(954 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003121337.2| PREDICTED: probable arginyl-tRNA synthetase,... 84 1e-16
Alignment gi|XP_003121335.1| PREDICTED: probable arginyl-tRNA synthetase,... 83 2e-16
>ref|XP_003121337.2| PREDICTED: probable arginyl-tRNA synthetase, mitochondrial-like
[Sus scrofa].
Length = 502
Score = 84.0 bits (206), Expect = 1e-16
Identities = 43/98 (43%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Frame = +1
Query: 604 KKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRINHVGDWGTQFGMLIAH 783
KK++V+FSSPN+AK+ HVGHLRSTIIG ++ L E G+ V RIN++GDWG QFG+L
Sbjct: 49 KKIVVEFSSPNVAKKFHVGHLRSTIIGNFIANLKEALGHQVTRINYLGDWGMQFGLLGTG 108
Query: 784 LQ-DKFPDYLRVSPPIGDLQAFYRESKERFDTEEEFRS 894
Q + + L+ +P + + + +KE D + +S
Sbjct: 109 FQLFGYEEKLQSNPLQHLFEVYVQVNKEAADNKNVAKS 146
>ref|XP_003121335.1| PREDICTED: probable arginyl-tRNA synthetase, mitochondrial-like
[Sus scrofa].
Length = 225
Score = 83.2 bits (204), Expect = 2e-16
Identities = 47/153 (30%), Positives = 84/153 (54%), Gaps = 9/153 (5%)
Frame = +1
Query: 343 SQQPKFGDYQCNSAMGISQMLKTKEQKVNP--REIAENITKNLPDNEYIEKVEIAGPGFI 516
S++ + D+Q + + +L+ P + A + + L + + ++ G G +
Sbjct: 34 SRKEEVADFQ----LSVDSLLENNNDHSRPDIQIQAMRLAEKLKCDTVVSEIS-TGQGTV 88
Query: 517 NIHLKKSFVSQQLTNLLVN-----GVQLPAIGA--NKKVIVDFSSPNIAKEMHVGHLRST 675
N + + +++ + ++ G++ KK++V+FSSPN+AK+ HVGHLRST
Sbjct: 89 NFKINRELLTKTVLQQVIEDGSKYGLKSELFSGLPQKKIVVEFSSPNVAKKFHVGHLRST 148
Query: 676 IIGESMSRLFEFAGYDVLRINHVGDWGTQFGML 774
IIG ++ L E G+ V RIN++GDWG QFG+L
Sbjct: 149 IIGNFIANLKEALGHQVTRINYLGDWGMQFGLL 181
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,415,874
Number of extensions: 477697
Number of successful extensions: 1253
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1253
Number of HSP's successfully gapped: 2
Length of query: 318
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 219
Effective length of database: 8,879,129
Effective search space: 1944529251
Effective search space used: 1944529251
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003316
(954 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 151 8e-34
>Sscrofa_Chr16
|| Length = 86898991
Score = 151 bits (76), Expect = 8e-34
Identities = 98/104 (94%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 852 ggaatccaaggagagatttgatactgaggaggaattta-gaagcgagcgtatcaatgtgt 910
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 59888766 ggaatccaagaagagatttgatactgaggaggaatttaagaagcgagcgtatcaatgtgt 59888825
Query: 911 agtattgctccagaagtaaaatccagacatctttaaagcttgga 954
|||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 59888826 agtattgctccagagtaaaaatccagacatcttaaaagcttgga 59888869
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,735,080
Number of extensions: 228
Number of successful extensions: 228
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 1
Length of query: 954
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 933
Effective length of database: 2,808,413,156
Effective search space: 2620249474548
Effective search space used: 2620249474548
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)