Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003317
(982 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095614.1| ankyrin repeat domain-containing protein 9 [... 374 e-104
>ref|NP_001095614.1| ankyrin repeat domain-containing protein 9 [Bos taurus].
Length = 318
Score = 374 bits (960), Expect = e-104
Identities = 184/209 (88%), Positives = 185/209 (88%)
Frame = +2
Query: 326 MPWDXXXXXXXXXXXXXXXXXXXXXXQKQCRKSSFAFYQAVRDLLPVWLLEDMRASEAFH 505
MPWD QKQCRKSSFAFYQAVRDLLPVWLLEDMRASEAFH
Sbjct: 1 MPWDARLPGGGAEGGPEGTGAARSRAQKQCRKSSFAFYQAVRDLLPVWLLEDMRASEAFH 60
Query: 506 WDERGRAAAYSPSEALLYALVHDHQAYAHYLLATFPRRALAPPSAGFRCCAAPGPHVALA 685
WDERGRAAAYSPSEALLYALVHDHQ YAHYLLATFPRRALAPPSAGFRCCAAPGPHVALA
Sbjct: 61 WDERGRAAAYSPSEALLYALVHDHQGYAHYLLATFPRRALAPPSAGFRCCAAPGPHVALA 120
Query: 686 VRYNRVGILRRILRTVRDFPAEERARLLDRRGCSRVEGGGTSLHVACELARPECLFLLLG 865
VRYNRVGILRRILRTVRDFPAEERARLLDRRGCSRVEGGGT+LHVACEL RPECLFLLLG
Sbjct: 121 VRYNRVGILRRILRTVRDFPAEERARLLDRRGCSRVEGGGTALHVACELVRPECLFLLLG 180
Query: 866 HGASPGLRDGGGLTPLELLLRQLGRDAGA 952
HGASPGLRDGGGLTPLELLLRQLGRDAGA
Sbjct: 181 HGASPGLRDGGGLTPLELLLRQLGRDAGA 209
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 27,677,915
Number of extensions: 716405
Number of successful extensions: 5021
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4973
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 224
Effective length of database: 14,273,310
Effective search space: 3197221440
Effective search space used: 3197221440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003317
(982 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547987.2| PREDICTED: similar to ankyrin repeat domain 9 [... 373 e-103
>ref|XP_547987.2| PREDICTED: similar to ankyrin repeat domain 9 [Canis familiaris].
Length = 612
Score = 373 bits (957), Expect = e-103
Identities = 183/212 (86%), Positives = 187/212 (88%)
Frame = +2
Query: 317 ATSMPWDXXXXXXXXXXXXXXXXXXXXXXQKQCRKSSFAFYQAVRDLLPVWLLEDMRASE 496
ATSMPWD QKQCRKSSFAFYQAVRDLLPVW LEDMRASE
Sbjct: 287 ATSMPWDARRPGGSADGGPEGAGAARSRAQKQCRKSSFAFYQAVRDLLPVWFLEDMRASE 346
Query: 497 AFHWDERGRAAAYSPSEALLYALVHDHQAYAHYLLATFPRRALAPPSAGFRCCAAPGPHV 676
AFHWDERGRAAAYSPSEALLYALVHDH+AYAHYLLATFPRRALAPPSAGFRCCAAPGPHV
Sbjct: 347 AFHWDERGRAAAYSPSEALLYALVHDHRAYAHYLLATFPRRALAPPSAGFRCCAAPGPHV 406
Query: 677 ALAVRYNRVGILRRILRTVRDFPAEERARLLDRRGCSRVEGGGTSLHVACELARPECLFL 856
ALAVRYNRVGILRRILRTVRDFP +ERARLLDRRGC+RVEGGGT+LHVACELARPECLFL
Sbjct: 407 ALAVRYNRVGILRRILRTVRDFPPDERARLLDRRGCTRVEGGGTALHVACELARPECLFL 466
Query: 857 LLGHGASPGLRDGGGLTPLELLLRQLGRDAGA 952
LLGHGASPGLRDGGGLTPLELLLR LGRDAGA
Sbjct: 467 LLGHGASPGLRDGGGLTPLELLLRHLGRDAGA 498
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 28,712,615
Number of extensions: 716656
Number of successful extensions: 5856
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5802
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 224
Effective length of database: 15,440,896
Effective search space: 3458760704
Effective search space used: 3458760704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003317
(982 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_689539.1| ankyrin repeat domain-containing protein 9 [Hom... 378 e-105
>ref|NP_689539.1| ankyrin repeat domain-containing protein 9 [Homo sapiens].
Length = 317
Score = 378 bits (970), Expect = e-105
Identities = 186/210 (88%), Positives = 188/210 (89%)
Frame = +2
Query: 326 MPWDXXXXXXXXXXXXXXXXXXXXXXQKQCRKSSFAFYQAVRDLLPVWLLEDMRASEAFH 505
MPWD QKQCRKSSFAFYQAVRDLLPVWLLEDMRASEAFH
Sbjct: 1 MPWDARRPGGGADGGPEASGAARSRAQKQCRKSSFAFYQAVRDLLPVWLLEDMRASEAFH 60
Query: 506 WDERGRAAAYSPSEALLYALVHDHQAYAHYLLATFPRRALAPPSAGFRCCAAPGPHVALA 685
WDERGRAAAYSPSEALLYALVHDHQAYAHYLLATFPRRALAPPSAGFRCCAAPGPHVALA
Sbjct: 61 WDERGRAAAYSPSEALLYALVHDHQAYAHYLLATFPRRALAPPSAGFRCCAAPGPHVALA 120
Query: 686 VRYNRVGILRRILRTVRDFPAEERARLLDRRGCSRVEGGGTSLHVACELARPECLFLLLG 865
VRYNRVGILRRILRT+RDFPAEERAR+LDRRGCSRVEGGGTSLHVACELARPECLFLLLG
Sbjct: 121 VRYNRVGILRRILRTLRDFPAEERARVLDRRGCSRVEGGGTSLHVACELARPECLFLLLG 180
Query: 866 HGASPGLRDGGGLTPLELLLRQLGRDAGAT 955
HGASPGLRDGGGLTPLELLLRQLGRDAGAT
Sbjct: 181 HGASPGLRDGGGLTPLELLLRQLGRDAGAT 210
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 27,874,803
Number of extensions: 682675
Number of successful extensions: 4797
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4766
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 224
Effective length of database: 14,901,872
Effective search space: 3338019328
Effective search space used: 3338019328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003317
(982 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_780416.2| ankyrin repeat domain-containing protein 9 [Mus... 343 9e-95
>ref|NP_780416.2| ankyrin repeat domain-containing protein 9 [Mus musculus].
Length = 326
Score = 343 bits (881), Expect = 9e-95
Identities = 168/183 (91%), Positives = 172/183 (93%)
Frame = +2
Query: 404 QKQCRKSSFAFYQAVRDLLPVWLLEDMRASEAFHWDERGRAAAYSPSEALLYALVHDHQA 583
QKQCRKSSFAFY AVRD LPVWLLED+RASEAFH DERGRAAAYSPSEALLYALVHDHQA
Sbjct: 26 QKQCRKSSFAFYLAVRDQLPVWLLEDIRASEAFHCDERGRAAAYSPSEALLYALVHDHQA 85
Query: 584 YAHYLLATFPRRALAPPSAGFRCCAAPGPHVALAVRYNRVGILRRILRTVRDFPAEERAR 763
YAHYLLATFPR ALAPPSAGFRCC APGPHVALAVRYNRVGILRRILRTV+DFP EER R
Sbjct: 86 YAHYLLATFPRCALAPPSAGFRCCTAPGPHVALAVRYNRVGILRRILRTVQDFPVEERVR 145
Query: 764 LLDRRGCSRVEGGGTSLHVACELARPECLFLLLGHGASPGLRDGGGLTPLELLLRQLGRD 943
LLDRRGCSRVEGGGTSLHVACELARPECLFLLLGHGASPGLRDG G TPLELLLRQL +D
Sbjct: 146 LLDRRGCSRVEGGGTSLHVACELARPECLFLLLGHGASPGLRDGSGFTPLELLLRQLNQD 205
Query: 944 AGA 952
A +
Sbjct: 206 ASS 208
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 23,307,522
Number of extensions: 558209
Number of successful extensions: 3674
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3642
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 225
Effective length of database: 12,553,887
Effective search space: 2824624575
Effective search space used: 2824624575
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003317
(982 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,184,880
Number of extensions: 497773
Number of successful extensions: 3352
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3315
Number of HSP's successfully gapped: 0
Length of query: 327
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 228
Effective length of database: 8,879,129
Effective search space: 2024441412
Effective search space used: 2024441412
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003317
(982 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 543 e-152
>Sscrofa_Chr07
|| Length = 134764511
Score = 543 bits (274), Expect = e-152
Identities = 297/302 (98%), Gaps = 2/302 (0%)
Strand = Plus / Plus
Query: 682 ggcggtgcgctacaaccgcgtgggcatcctgcgccgcatcctgcgcaccgtgcgcgactt 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129270943 ggcggtgcgctacaaccgcgtgggcatcctgcgccgcatcctgcgcaccgtgcgcgactt 129271002
Query: 742 tccggcggaggagcgcgcgcgcctgctcgaccgacggggctgcagccgcgtggagggtgg 801
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 129271003 tccggcggaggagcgcgcgcgcctgctcgaccgacagggctgcagccgcgtggagggtgg 129271062
Query: 802 cggcacgtcgctgcacgtggcctgcgagctggcgcgccccgagtgcctcttcctgctgct 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129271063 cggcacgtcgctgcacgtggcctgcgagctggcgcgccccgagtgcctcttcctgctgct 129271122
Query: 862 cggccacggtgcctcgcctggcctgcgcgacggcggcggcctcacgcccctggaactgct 921
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 129271123 cggccacggtgcctcgcctggcctgcgcgacggcggcggcctcacgccgctggaactact 129271182
Query: 922 cctgcgccagctgggccgcgacgccggggccacggttcactgccgccg-caacgccgcca 980
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 129271183 cctgcgccagctgggccgcgacgccggggccacgg-tcactgccgccgccaacgccgcca 129271241
Query: 981 cc 982
||
Sbjct: 129271242 cc 129271243
Score = 392 bits (198), Expect = e-106
Identities = 204/206 (99%)
Strand = Plus / Plus
Query: 405 agaagcagtgccgcaagtcgtcgttcgccttctaccaggctgtgcgggacctgctgcccg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129270666 agaagcagtgccgcaagtcgtcgttcgccttctaccaggctgtgcgggacctgctgcccg 129270725
Query: 465 tgtggctgctcgaggacatgcgcgccagcgaggccttccactgggacgagcgcggacgcg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129270726 tgtggctgctcgaggacatgcgcgccagcgaggccttccactgggacgagcgcggacgcg 129270785
Query: 525 ccgccgcctactcgccgtcggaggcgctgctctacgcactcgtgcacgaccaccaggcgt 584
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 129270786 ccgccgcctactcgccgtcggaggcgctcctctacgcgctcgtgcacgaccaccaggcgt 129270845
Query: 585 acgcgcactacctgctggccacgttc 610
||||||||||||||||||||||||||
Sbjct: 129270846 acgcgcactacctgctggccacgttc 129270871
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 196 agatgaagaagctgaaacgcagagaaggaaagtgatacacccaaagacacagaactagtc 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129269925 agatgaagaagctgaaacgcagagaaggaaagtgatacacccaaagacacagaactagtc 129269984
Query: 256 atcgcagtgcactaaccaggt 276
|||||||||||||||||||||
Sbjct: 129269985 atcgcagtgcactaaccaggt 129270005
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 272 caggtggcctgcctcaggcctctgccctgaggctgggaggcgccagccaccagcatgcct 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129270533 caggtggcctgcctcaggcctctgccctgaggctgggaggcgccagccaccagcatgcct 129270592
Query: 332 tggga 336
|||||
Sbjct: 129270593 tggga 129270597
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 1 gcttgccgccagcgccggcaccgccgcccagcaatcgagccgcggcggctcaga 54
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129268726 gcttgccgccagcgccggcaccgccgcccagcaatcgagccgcggcggctcaga 129268779
Score = 60.0 bits (30), Expect = 2e-06
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 86 tacccccctgcctgtcggtcctgggagctt 115
||||||||||||||||||||||||||||||
Sbjct: 129268811 tacccccctgcctgtcggtcctgggagctt 129268840
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 12,705,413
Number of extensions: 112
Number of successful extensions: 112
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 6
Length of query: 982
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 961
Effective length of database: 2,808,413,156
Effective search space: 2698885042916
Effective search space used: 2698885042916
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)