Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003320
(1395 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001019702.1| RING finger protein 114 [Bos taurus]. 462 e-130
Alignment gi|NP_001092604.1| RING finger protein 166 [Bos taurus]. 213 4e-55
Alignment gi|NP_001192788.1| E3 ubiquitin-protein ligase RNF125 [Bos taur... 136 5e-32
Alignment gi|XP_002697731.1| PREDICTED: zinc finger protein 313-like [Bos... 136 5e-32
Alignment gi|NP_001033263.1| E3 ubiquitin-protein ligase RNF138 [Bos taur... 134 1e-31
Alignment gi|XP_002685429.1| PREDICTED: zinc finger protein 313-like [Bos... 92 8e-19
Alignment gi|XP_002703679.1| PREDICTED: zinc finger protein 313-like [Bos... 92 8e-19
Alignment gi|NP_001069743.1| E3 ubiquitin-protein ligase KCMF1 [Bos tauru... 62 1e-09
Alignment gi|NP_001192421.1| PDZ domain-containing RING finger protein 4 ... 55 1e-07
Alignment gi|XP_002687419.1| PREDICTED: PDZ domain containing ring finger... 55 1e-07
>ref|NP_001019702.1| RING finger protein 114 [Bos taurus].
Length = 230
Score = 462 bits (1189), Expect = e-130
Identities = 217/230 (94%), Positives = 223/230 (96%), Gaps = 2/230 (0%)
Frame = +1
Query: 31 MAAQPQD--REGGAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLK 204
MAAQ Q R+GGAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLK
Sbjct: 1 MAAQAQAPARDGGAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLK 60
Query: 205 PKKPVCGVCRSTLAPGVRAVELERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYIM 384
PKKPVCGVCRS LAPGVRAVELERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYIM
Sbjct: 61 PKKPVCGVCRSALAPGVRAVELERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYIM 120
Query: 385 EGVKATTKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICAS 564
EGVKATTKDAS QPR+VPNRYTFPCPYCPEKNFDQEGLVEHCKL HSTDTKSVVCPICAS
Sbjct: 121 EGVKATTKDASRQPRSVPNRYTFPCPYCPEKNFDQEGLVEHCKLSHSTDTKSVVCPICAS 180
Query: 565 MPWGDPNYRSANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRSLLDQ 714
MPWGDPNYRSANFIEH+QRRHQFSYDTFVDYDVDEEDM+NQVLQRS++DQ
Sbjct: 181 MPWGDPNYRSANFIEHLQRRHQFSYDTFVDYDVDEEDMINQVLQRSIIDQ 230
>ref|NP_001092604.1| RING finger protein 166 [Bos taurus].
Length = 237
Score = 213 bits (541), Expect = 4e-55
Identities = 104/229 (45%), Positives = 139/229 (60%), Gaps = 5/229 (2%)
Frame = +1
Query: 34 AAQPQDREGGAQLAGPAAEADPLGRFTCPVCLEVYEKPVQV-PCGHVFCSACLQECLKPK 210
+AQ + GG A EA +++CP+CLEVY +PV + CGH FC CLQ CL+
Sbjct: 10 SAQQRQPPGGPAGGDSALEA----QYSCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVP 65
Query: 211 KPVCGVCRSTLAPGV--RAVELERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYIM 384
P+C +CR P +A +E+Q+ S + C GC K L+K+R HV++C K Q +
Sbjct: 66 SPLCPLCRLPFDPKKVDKAAHVEKQLASYKAPCRGCSKKVTLAKMRVHVSSCMKVQEQMA 125
Query: 385 EGVKATTKDASLQP--RNVPNRYTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPIC 558
K + QP VPNR TF CPYC +N DQ+ LV+HC H +D VVCPIC
Sbjct: 126 NCPKFVPVVPTSQPIPSAVPNRSTFACPYCGARNLDQQELVKHCVDNHRSDPNRVVCPIC 185
Query: 559 ASMPWGDPNYRSANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRSL 705
++MPWGDP+Y+SANF++H+ RH+FSYDTFVDY +DEE L SL
Sbjct: 186 SAMPWGDPSYKSANFLQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSL 234
>ref|NP_001192788.1| E3 ubiquitin-protein ligase RNF125 [Bos taurus].
Length = 232
Score = 136 bits (342), Expect = 5e-32
Identities = 73/209 (34%), Positives = 116/209 (55%), Gaps = 4/209 (1%)
Frame = +1
Query: 97 PLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSTL-APGVRAVELE 273
P+ F C VCLEV PV+ CGHVFC +C+ LK K C CR+ L + GV A ++
Sbjct: 31 PVTSFDCSVCLEVLHHPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSEGVPAADVA 90
Query: 274 RQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNY---IMEGVKATTKDASLQPRNVPNR 444
++++S +C C LS++RAH TC KY + + E + TT+
Sbjct: 91 KRMKSEFRNCTECDTLVCLSEMRAHTRTCQKYIDKYGPLQELGETTTRCV---------- 140
Query: 445 YTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASMPWGDPNYRSANFIEHIQRR 624
CP+C +K D++GL++HC H ++ + V CP+C +P + + + + I H+Q
Sbjct: 141 ----CPFC-QKELDEDGLLDHCINHHRSERRPVFCPLCRLVPNENRSSFNGSLIRHLQVS 195
Query: 625 HQFSYDTFVDYDVDEEDMMNQVLQRSLLD 711
H YD F+D+++ EE ++ +VL RSLL+
Sbjct: 196 HTLFYDDFLDFNIIEEALIQRVLDRSLLE 224
>ref|XP_002697731.1| PREDICTED: zinc finger protein 313-like [Bos taurus].
Length = 232
Score = 136 bits (342), Expect = 5e-32
Identities = 73/209 (34%), Positives = 116/209 (55%), Gaps = 4/209 (1%)
Frame = +1
Query: 97 PLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSTL-APGVRAVELE 273
P+ F C VCLEV PV+ CGHVFC +C+ LK K C CR+ L + GV A ++
Sbjct: 31 PVTSFDCSVCLEVLHHPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSEGVPAADVA 90
Query: 274 RQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNY---IMEGVKATTKDASLQPRNVPNR 444
++++S +C C LS++RAH TC KY + + E + TT+
Sbjct: 91 KRMKSEFRNCTECDTLVCLSEMRAHTRTCQKYIDKYGPLQELGETTTRCV---------- 140
Query: 445 YTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASMPWGDPNYRSANFIEHIQRR 624
CP+C +K D++GL++HC H ++ + V CP+C +P + + + + I H+Q
Sbjct: 141 ----CPFC-QKELDEDGLLDHCINHHRSERRPVFCPLCRLVPNENRSSFNGSLIRHLQVS 195
Query: 625 HQFSYDTFVDYDVDEEDMMNQVLQRSLLD 711
H YD F+D+++ EE ++ +VL RSLL+
Sbjct: 196 HTLFYDDFLDFNIIEEALIQRVLDRSLLE 224
>ref|NP_001033263.1| E3 ubiquitin-protein ligase RNF138 [Bos taurus].
Length = 245
Score = 134 bits (338), Expect = 1e-31
Identities = 74/227 (32%), Positives = 105/227 (46%), Gaps = 29/227 (12%)
Frame = +1
Query: 109 FTCPVCLEVYEKPVQVP-CGHVFCSACLQECLKPKKPVCGVCRSTL-----APGVRAVEL 270
F CPVC EV + PV+ C HVFC C ++ C +CR + A RA++L
Sbjct: 16 FYCPVCQEVLKTPVRTAACQHVFCRKCFLTAMRESGIHCPLCRGNVTRRERACPERALDL 75
Query: 271 ERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYIMEGVKATTKDASLQPRNVPNRY- 447
E + SC C K ++R H +C KYQ+ GV + + + +V N
Sbjct: 76 ENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEY--GVSSIIPNFQISQDSVGNSNR 133
Query: 448 ----------------------TFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICA 561
TF CP C E NF ++ L++HC H V CPIC
Sbjct: 134 SETSASDNIETYQENTGSSGHPTFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPICV 193
Query: 562 SMPWGDPNYRSANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRS 702
S+PWGDP+ + NF+ H+ +RHQF Y FV+ +DEE ++ S
Sbjct: 194 SLPWGDPSQVTRNFVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEES 240
>ref|XP_002685429.1| PREDICTED: zinc finger protein 313-like [Bos taurus].
Length = 104
Score = 92.4 bits (228), Expect = 8e-19
Identities = 44/83 (53%), Positives = 58/83 (69%), Gaps = 3/83 (3%)
Frame = +1
Query: 85 AEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSTLAPGVRAV 264
+EA+ LG F C VCLE+ EKPVQ+PC +FC LQECLKPKKP+C +C + LAP +
Sbjct: 11 SEANLLGHFECLVCLEMSEKPVQLPCERIFCPEFLQECLKPKKPLCALCCNALAPESQRG 70
Query: 265 E---LERQIESTETSCHGCRKNF 324
+ + +EST+TSCHG K+F
Sbjct: 71 DGRTATQPMESTKTSCHGFCKHF 93
>ref|XP_002703679.1| PREDICTED: zinc finger protein 313-like [Bos taurus].
Length = 104
Score = 92.4 bits (228), Expect = 8e-19
Identities = 44/83 (53%), Positives = 58/83 (69%), Gaps = 3/83 (3%)
Frame = +1
Query: 85 AEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSTLAPGVRAV 264
+EA+ LG F C VCLE+ EKPVQ+PC +FC LQECLKPKKP+C +C + LAP +
Sbjct: 11 SEANLLGHFECLVCLEMSEKPVQLPCERIFCPEFLQECLKPKKPLCALCCNALAPESQRG 70
Query: 265 E---LERQIESTETSCHGCRKNF 324
+ + +EST+TSCHG K+F
Sbjct: 71 DGRTATQPMESTKTSCHGFCKHF 93
>ref|NP_001069743.1| E3 ubiquitin-protein ligase KCMF1 [Bos taurus].
Length = 381
Score = 62.0 bits (149), Expect = 1e-09
Identities = 25/71 (35%), Positives = 40/71 (56%)
Frame = +1
Query: 430 NVPNRYTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASMPWGDPNYRSANFIE 609
+V +F CPYC + + + L EH H+ + V+CPICA++P GDPN+ + +F
Sbjct: 71 SVEQPQSFTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAA 130
Query: 610 HIQRRHQFSYD 642
H+ H+ D
Sbjct: 131 HLTLEHRAPRD 141
>ref|NP_001192421.1| PDZ domain-containing RING finger protein 4 [Bos taurus].
Length = 1037
Score = 55.5 bits (132), Expect = 1e-07
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Frame = +1
Query: 82 AAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSTLAPG--V 255
A DP F C +C +V E+P PCGHVFC+ CL ++ CR LAPG
Sbjct: 9 AESVDP--DFQCRLCGQVLEEPRCTPCGHVFCARCLLPWAARRRRCPLQCR-PLAPGELY 65
Query: 256 RAVELERQIESTETSC----HGCRKNFFLSKIRAHVATC 360
R + L ++ C GC ++ LS++ AHV C
Sbjct: 66 RVLPLRSLVQKLRIQCDYRPRGCGRSVQLSELAAHVERC 104
>ref|XP_002687419.1| PREDICTED: PDZ domain containing ring finger 4 [Bos taurus].
Length = 451
Score = 55.5 bits (132), Expect = 1e-07
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Frame = +1
Query: 82 AAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSTLAPG--V 255
A DP F C +C +V E+P PCGHVFC+ CL ++ CR LAPG
Sbjct: 9 AESVDP--DFQCRLCGQVLEEPRCTPCGHVFCARCLLPWAARRRRCPLQCR-PLAPGELY 65
Query: 256 RAVELERQIESTETSC----HGCRKNFFLSKIRAHVATC 360
R + L ++ C GC ++ LS++ AHV C
Sbjct: 66 RVLPLRSLVQKLRIQCDYRPRGCGRSVQLSELAAHVERC 104
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 59,040,144
Number of extensions: 1723655
Number of successful extensions: 6310
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 6249
Number of HSP's successfully gapped: 27
Length of query: 465
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 359
Effective length of database: 14,174,046
Effective search space: 5088482514
Effective search space used: 5088482514
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003320
(1395 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534453.2| PREDICTED: similar to Zinc finger protein 313 (... 477 e-134
Alignment gi|XP_851172.1| PREDICTED: similar to ring finger protein 166 [... 211 1e-54
Alignment gi|XP_547620.2| PREDICTED: similar to ring finger protein 125 [... 139 7e-33
Alignment gi|XP_537288.2| PREDICTED: similar to ring finger protein 138 i... 123 4e-28
Alignment gi|XP_548791.2| PREDICTED: similar to Tripartite motif protein ... 54 3e-07
Alignment gi|XP_540001.2| PREDICTED: similar to ring finger protein 127 [... 51 2e-06
Alignment gi|XP_853720.1| PREDICTED: similar to ring finger protein 151 [... 51 2e-06
Alignment gi|XP_851858.1| PREDICTED: similar to tripartite motif-containi... 51 3e-06
Alignment gi|XP_540474.2| PREDICTED: similar to chromosome 17 open readin... 50 5e-06
Alignment gi|XP_544426.2| PREDICTED: similar to tripartite motif-containi... 50 5e-06
>ref|XP_534453.2| PREDICTED: similar to Zinc finger protein 313 (RING finger protein
114) [Canis familiaris].
Length = 520
Score = 477 bits (1227), Expect = e-134
Identities = 223/235 (94%), Positives = 227/235 (96%)
Frame = +1
Query: 10 AALRGGKMAAQPQDREGGAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACL 189
AA RG KMAAQ Q+REG AQ AGPAAE+DPLGRFTCPVCLEVYEKPVQVPCGHVFCSACL
Sbjct: 286 AARRGSKMAAQQQEREGCAQRAGPAAESDPLGRFTCPVCLEVYEKPVQVPCGHVFCSACL 345
Query: 190 QECLKPKKPVCGVCRSTLAPGVRAVELERQIESTETSCHGCRKNFFLSKIRAHVATCSKY 369
QECLKPKKPVCGVCRS LAPGVRA ELERQIESTETSCHGCRKNFFLSKIRAHVATCSKY
Sbjct: 346 QECLKPKKPVCGVCRSALAPGVRAAELERQIESTETSCHGCRKNFFLSKIRAHVATCSKY 405
Query: 370 QNYIMEGVKATTKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVC 549
QNYIMEGVKATTKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKL HSTDTKSVVC
Sbjct: 406 QNYIMEGVKATTKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLCHSTDTKSVVC 465
Query: 550 PICASMPWGDPNYRSANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRSLLDQ 714
PICASMPWGDPNYRSANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRS++DQ
Sbjct: 466 PICASMPWGDPNYRSANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRSIIDQ 520
>ref|XP_851172.1| PREDICTED: similar to ring finger protein 166 [Canis familiaris].
Length = 237
Score = 211 bits (537), Expect = 1e-54
Identities = 104/237 (43%), Positives = 140/237 (59%), Gaps = 5/237 (2%)
Frame = +1
Query: 10 AALRGGKMAAQPQDREGGAQLAGPAAEADPLGRFTCPVCLEVYEKPVQV-PCGHVFCSAC 186
A R +AQ + GG EA +++CP+CLEVY +PV + CGH FC C
Sbjct: 2 AMFRSLVASAQQRQPAGGPAGGDSGLEA----QYSCPICLEVYHRPVAIGSCGHTFCGEC 57
Query: 187 LQECLKPKKPVCGVCRSTLAPGV--RAVELERQIESTETSCHGCRKNFFLSKIRAHVATC 360
LQ CL+ P+C +CR P +A +E+Q+ S + C GC K L+K+R HV++C
Sbjct: 58 LQPCLQVPSPLCPLCRLPFDPKKVDKAAHVEKQLSSYKAPCRGCNKKVTLAKMRVHVSSC 117
Query: 361 SKYQNYIMEGVKATTKDASLQP--RNVPNRYTFPCPYCPEKNFDQEGLVEHCKLVHSTDT 534
K Q + K + QP VPNR TF CPYC +N DQ+ L++HC H +D
Sbjct: 118 MKVQEQMANCPKFVPVVPTSQPIPSAVPNRSTFTCPYCGARNLDQQELLKHCVDNHRSDP 177
Query: 535 KSVVCPICASMPWGDPNYRSANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRSL 705
VVCPIC++MPWGDP+Y+SANF++H+ RH+FSYDTFVDY +DEE L SL
Sbjct: 178 NRVVCPICSAMPWGDPSYKSANFLQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSL 234
>ref|XP_547620.2| PREDICTED: similar to ring finger protein 125 [Canis familiaris].
Length = 416
Score = 139 bits (350), Expect = 7e-33
Identities = 72/206 (34%), Positives = 115/206 (55%), Gaps = 1/206 (0%)
Frame = +1
Query: 97 PLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSTL-APGVRAVELE 273
P+ F C VCLEV +PV+ CGHVFC +C+ LK + C CR+ L + GV A ++
Sbjct: 215 PVTSFDCSVCLEVLHQPVRTRCGHVFCRSCIATSLKNNRWTCPYCRAYLPSEGVPATDVA 274
Query: 274 RQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYIMEGVKATTKDASLQPRNVPNRYTF 453
++++S +C C LS++RAH+ +C KY + K LQ
Sbjct: 275 KRMKSEYQNCTECDTLVCLSEMRAHIRSCQKYID----------KYGPLQELG-ETATRC 323
Query: 454 PCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASMPWGDPNYRSANFIEHIQRRHQF 633
CP+C ++ D++ L++HC H ++ +SV CP+C +P +P S + I H+Q H
Sbjct: 324 VCPFC-QRELDEDSLLDHCITHHRSERRSVFCPLCRLLPNENPGSFSGSLIRHLQVNHTL 382
Query: 634 SYDTFVDYDVDEEDMMNQVLQRSLLD 711
YD F+D+++ EE ++ +VL RSLL+
Sbjct: 383 FYDDFIDFNIIEEALIRRVLDRSLLE 408
>ref|XP_537288.2| PREDICTED: similar to ring finger protein 138 isoform 1 [Canis
familiaris].
Length = 338
Score = 123 bits (309), Expect = 4e-28
Identities = 69/217 (31%), Positives = 101/217 (46%), Gaps = 26/217 (11%)
Frame = +1
Query: 130 EVYEKPVQVP-CGHVFCSACLQECLKPKKPVCGVCRSTL-----APGVRAVELERQIEST 291
EV + PV+ C HVFC C ++ C +CR + A RA++LE +
Sbjct: 117 EVLKTPVRTAACQHVFCRKCFLTAMRESGIHCPLCRGNVTRRERACPERALDLENIMRKF 176
Query: 292 ETSCHGCRKNFFLSKIRAHVATCSKYQN-YIMEGV-----------------KATTKD-- 411
SC C K ++R H +C KYQ+ Y + + + +T D
Sbjct: 177 SGSCRCCAKQIKFYRMRHHYKSCKKYQDEYGVSSIIPNFQISQDSVGNSNRSETSTSDNT 236
Query: 412 ASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASMPWGDPNYR 591
+ Q TF CP C E NF ++ L++HC H V CPIC S+PWGDP+
Sbjct: 237 ETYQENTSSGHPTFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPICVSLPWGDPSQI 296
Query: 592 SANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRS 702
+ NF+ H+ +RHQF Y FV+ +DEE ++ S
Sbjct: 297 TRNFVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEES 333
>ref|XP_548791.2| PREDICTED: similar to Tripartite motif protein 7
(Glycogenin-interacting protein) (RING finger protein
90) [Canis familiaris].
Length = 1147
Score = 54.3 bits (129), Expect = 3e-07
Identities = 25/65 (38%), Positives = 35/65 (53%)
Frame = +1
Query: 22 GGKMAAQPQDREGGAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECL 201
G +MAA + GA A A+ G TC +CLE++ +PV V CGH FC +C+ C
Sbjct: 631 GERMAAVGLRTDPGAGAEALALAAELQGETTCSICLELFREPVSVECGHSFCRSCIARCW 690
Query: 202 KPKKP 216
+ P
Sbjct: 691 ERPGP 695
>ref|XP_540001.2| PREDICTED: similar to ring finger protein 127 [Canis familiaris].
Length = 909
Score = 51.2 bits (121), Expect = 2e-06
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +1
Query: 109 FTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSTL 243
F C +C+ ++ +PV PCGH FC CL+ CL P C +C+ +L
Sbjct: 613 FECSLCMRLFFEPVTTPCGHSFCKNCLERCL-DHTPYCPLCKESL 656
>ref|XP_853720.1| PREDICTED: similar to ring finger protein 151 [Canis familiaris].
Length = 376
Score = 51.2 bits (121), Expect = 2e-06
Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Frame = +1
Query: 52 REGGAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVC 231
R GG L A+ D F C VC V ++PV++PC H+FC C+ L +K C C
Sbjct: 123 RSGGYDLNLFASPPDC--NFLCSVCHGVLKRPVRLPCSHIFCKKCILRWLARQK-TCPCC 179
Query: 232 RSTL--APGVRAVELERQIESTETSCH----GCRKNFFLSKIRAHVATC 360
R + V +L R I E C GC L+ R H +C
Sbjct: 180 RKEVKRKKMVHVNKLRRTIGRLEVKCKNAEAGCSVTCPLAHRRGHQDSC 228
>ref|XP_851858.1| PREDICTED: similar to tripartite motif-containing 65 [Canis
familiaris].
Length = 545
Score = 50.8 bits (120), Expect = 3e-06
Identities = 22/65 (33%), Positives = 35/65 (53%)
Frame = +1
Query: 88 EADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSTLAPGVRAVE 267
E P+ + C +CL ++++PV +PCGH+FC AC+++ C CR P E
Sbjct: 16 EGAPVVQVACSICLGLFQEPVTLPCGHIFCRACIRDWGGRCDKACPECRE---PFPDVAE 72
Query: 268 LERQI 282
L R +
Sbjct: 73 LRRNV 77
>ref|XP_540474.2| PREDICTED: similar to chromosome 17 open reading frame 27 isoform 1
[Canis familiaris].
Length = 3388
Score = 50.1 bits (118), Expect = 5e-06
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +1
Query: 115 CPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSTL 243
CPVCL ++PV +PCGHVFC C+ C+ + C C + L
Sbjct: 2184 CPVCLGDAQEPVSLPCGHVFCLRCINTCITLGQMACPYCLTDL 2226
>ref|XP_544426.2| PREDICTED: similar to tripartite motif-containing 62 [Canis
familiaris].
Length = 545
Score = 50.1 bits (118), Expect = 5e-06
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Frame = +1
Query: 4 SGAALRG----GKMAAQPQDREGGAQLAGPAAEADPL-GRFTCPVCLEVYEKPVQVPCGH 168
+G+ LRG G +AA+P GG A P+A A L C +CL +Y+ PV + C H
Sbjct: 42 AGSGLRGCARTGAVAAEPA---GGPLSAAPSAMACSLKDELLCSICLSIYQDPVSLGCEH 98
Query: 169 VFCSACLQECLKPKKPV----CGVCRSTLAPGVRAVELE 273
FC C+ E ++ C CR T A A L+
Sbjct: 99 YFCRRCITEHWVRQEAQGARDCPECRRTFAEPALAPSLK 137
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 61,347,991
Number of extensions: 1763301
Number of successful extensions: 6493
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 6462
Number of HSP's successfully gapped: 13
Length of query: 465
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 359
Effective length of database: 15,340,888
Effective search space: 5507378792
Effective search space used: 5507378792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003320
(1395 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061153.1| RING finger protein 114 [Homo sapiens]. 461 e-130
Alignment gi|NP_849163.1| RING finger protein 166 isoform 1 [Homo sapiens]. 217 2e-56
Alignment gi|NP_001165287.1| RING finger protein 166 isoform 3 [Homo sapi... 138 1e-32
Alignment gi|NP_060301.2| E3 ubiquitin-protein ligase RNF125 [Homo sapien... 136 5e-32
Alignment gi|NP_001178253.1| E3 ubiquitin-protein ligase RNF138 isoform 3... 135 9e-32
Alignment gi|NP_057355.2| E3 ubiquitin-protein ligase RNF138 isoform 1 [H... 135 9e-32
Alignment gi|NP_001165286.1| RING finger protein 166 isoform 2 [Homo sapi... 132 8e-31
Alignment gi|NP_937761.1| E3 ubiquitin-protein ligase RNF138 isoform 2 [H... 92 9e-19
Alignment gi|NP_064507.3| E3 ubiquitin-protein ligase KCMF1 [Homo sapiens]. 62 1e-09
Alignment gi|NP_001158067.1| PDZ domain-containing RING finger protein 4 ... 52 1e-06
>ref|NP_061153.1| RING finger protein 114 [Homo sapiens].
Length = 228
Score = 461 bits (1186), Expect = e-130
Identities = 215/228 (94%), Positives = 220/228 (96%)
Frame = +1
Query: 31 MAAQPQDREGGAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPK 210
MAAQ +D G AQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPK
Sbjct: 1 MAAQQRDCGGAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPK 60
Query: 211 KPVCGVCRSTLAPGVRAVELERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYIMEG 390
KPVCGVCRS LAPGVRAVELERQIESTETSCHGCRKNFFLSKIR+HVATCSKYQNYIMEG
Sbjct: 61 KPVCGVCRSALAPGVRAVELERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEG 120
Query: 391 VKATTKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASMP 570
VKAT KDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKL HSTDTKSVVCPICASMP
Sbjct: 121 VKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICASMP 180
Query: 571 WGDPNYRSANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRSLLDQ 714
WGDPNYRSANF EHIQRRH+FSYDTFVDYDVDEEDMMNQVLQRS++DQ
Sbjct: 181 WGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSIIDQ 228
>ref|NP_849163.1| RING finger protein 166 isoform 1 [Homo sapiens].
Length = 237
Score = 217 bits (553), Expect = 2e-56
Identities = 102/217 (47%), Positives = 136/217 (62%), Gaps = 6/217 (2%)
Frame = +1
Query: 73 AGPAAEADPL-GRFTCPVCLEVYEKPVQV-PCGHVFCSACLQECLKPKKPVCGVCRSTLA 246
AGPA L ++TCP+CLEVY +PV + CGH FC CLQ CL+ P+C +CR
Sbjct: 18 AGPAGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRLPFD 77
Query: 247 PGV--RAVELERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYIMEGVKATTKDASL 420
P +A +E+Q+ S + C GC K L+K+R H+++C K Q + K +
Sbjct: 78 PKKVDKATHVEKQLSSYKAPCRGCNKKVTLAKMRVHISSCLKVQEQMANCPKFVPVVPTS 137
Query: 421 QP--RNVPNRYTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASMPWGDPNYRS 594
QP N+PNR TF CPYC +N DQ+ LV+HC H +D VVCPIC++MPWGDP+Y+S
Sbjct: 138 QPIPSNIPNRSTFACPYCGARNLDQQELVKHCVESHRSDPNRVVCPICSAMPWGDPSYKS 197
Query: 595 ANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRSL 705
ANF++H+ RH+FSYDTFVDY +DEE L SL
Sbjct: 198 ANFLQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSL 234
>ref|NP_001165287.1| RING finger protein 166 isoform 3 [Homo sapiens].
Length = 128
Score = 138 bits (348), Expect = 1e-32
Identities = 62/125 (49%), Positives = 82/125 (65%), Gaps = 2/125 (1%)
Frame = +1
Query: 337 IRAHVATCSKYQNYIMEGVKATTKDASLQP--RNVPNRYTFPCPYCPEKNFDQEGLVEHC 510
+R H+++C K Q + K + QP N+PNR TF CPYC +N DQ+ LV+HC
Sbjct: 1 MRVHISSCLKVQEQMANCPKFVPVVPTSQPIPSNIPNRSTFACPYCGARNLDQQELVKHC 60
Query: 511 KLVHSTDTKSVVCPICASMPWGDPNYRSANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQV 690
H +D VVCPIC++MPWGDP+Y+SANF++H+ RH+FSYDTFVDY +DEE
Sbjct: 61 VESHRSDPNRVVCPICSAMPWGDPSYKSANFLQHLLHRHKFSYDTFVDYSIDEEAAFQAA 120
Query: 691 LQRSL 705
L SL
Sbjct: 121 LALSL 125
>ref|NP_060301.2| E3 ubiquitin-protein ligase RNF125 [Homo sapiens].
Length = 232
Score = 136 bits (342), Expect = 5e-32
Identities = 72/206 (34%), Positives = 114/206 (55%), Gaps = 1/206 (0%)
Frame = +1
Query: 97 PLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSTL-APGVRAVELE 273
P+ F C VCLEV +PV+ CGHVFC +C+ LK K C CR+ L + GV A ++
Sbjct: 31 PVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSEGVPATDVA 90
Query: 274 RQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYIMEGVKATTKDASLQPRNVPNRYTF 453
++++S +C C LS++RAH+ TC KY + K LQ
Sbjct: 91 KRMKSEYKNCAECDTLVCLSEMRAHIRTCQKYID----------KYGPLQELE-ETAARC 139
Query: 454 PCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASMPWGDPNYRSANFIEHIQRRHQF 633
CP+C ++ ++ L++HC H ++ + V CP+C +P +P+ S + I H+Q H
Sbjct: 140 VCPFC-QRELYEDSLLDHCITHHRSERRPVFCPLCRLIPDENPSSFSGSLIRHLQVSHTL 198
Query: 634 SYDTFVDYDVDEEDMMNQVLQRSLLD 711
YD F+D+++ EE ++ +VL RSLL+
Sbjct: 199 FYDDFIDFNIIEEALIRRVLDRSLLE 224
>ref|NP_001178253.1| E3 ubiquitin-protein ligase RNF138 isoform 3 [Homo sapiens].
Length = 282
Score = 135 bits (340), Expect = 9e-32
Identities = 74/227 (32%), Positives = 105/227 (46%), Gaps = 29/227 (12%)
Frame = +1
Query: 109 FTCPVCLEVYEKPVQVP-CGHVFCSACLQECLKPKKPVCGVCRSTL-----APGVRAVEL 270
F CPVC EV + PV+ C HVFC C ++ C +CR + A RA++L
Sbjct: 53 FYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVTRRERACPERALDL 112
Query: 271 ERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYIMEGVKATTKDASLQPRNVPNRY- 447
E + SC C K ++R H +C KYQ+ GV + + + +V N
Sbjct: 113 ENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEY--GVSSIIPNFQISQDSVGNSNR 170
Query: 448 ----------------------TFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICA 561
TF CP C E NF ++ L++HC H V CPIC
Sbjct: 171 SETSTSDNTETYQENTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPICV 230
Query: 562 SMPWGDPNYRSANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRS 702
S+PWGDP+ + NF+ H+ +RHQF Y FV+ +DEE ++ S
Sbjct: 231 SLPWGDPSQITRNFVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEES 277
>ref|NP_057355.2| E3 ubiquitin-protein ligase RNF138 isoform 1 [Homo sapiens].
Length = 245
Score = 135 bits (340), Expect = 9e-32
Identities = 74/227 (32%), Positives = 105/227 (46%), Gaps = 29/227 (12%)
Frame = +1
Query: 109 FTCPVCLEVYEKPVQVP-CGHVFCSACLQECLKPKKPVCGVCRSTL-----APGVRAVEL 270
F CPVC EV + PV+ C HVFC C ++ C +CR + A RA++L
Sbjct: 16 FYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVTRRERACPERALDL 75
Query: 271 ERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYIMEGVKATTKDASLQPRNVPNRY- 447
E + SC C K ++R H +C KYQ+ GV + + + +V N
Sbjct: 76 ENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEY--GVSSIIPNFQISQDSVGNSNR 133
Query: 448 ----------------------TFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICA 561
TF CP C E NF ++ L++HC H V CPIC
Sbjct: 134 SETSTSDNTETYQENTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPICV 193
Query: 562 SMPWGDPNYRSANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRS 702
S+PWGDP+ + NF+ H+ +RHQF Y FV+ +DEE ++ S
Sbjct: 194 SLPWGDPSQITRNFVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEES 240
>ref|NP_001165286.1| RING finger protein 166 isoform 2 [Homo sapiens].
Length = 156
Score = 132 bits (332), Expect = 8e-31
Identities = 55/94 (58%), Positives = 69/94 (73%)
Frame = +1
Query: 424 PRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASMPWGDPNYRSANF 603
P N+PNR TF CPYC +N DQ+ LV+HC H +D VVCPIC++MPWGDP+Y+SANF
Sbjct: 60 PSNIPNRSTFACPYCGARNLDQQELVKHCVESHRSDPNRVVCPICSAMPWGDPSYKSANF 119
Query: 604 IEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRSL 705
++H+ RH+FSYDTFVDY +DEE L SL
Sbjct: 120 LQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSL 153
>ref|NP_937761.1| E3 ubiquitin-protein ligase RNF138 isoform 2 [Homo sapiens].
Length = 151
Score = 92.4 bits (228), Expect = 9e-19
Identities = 37/85 (43%), Positives = 51/85 (60%)
Frame = +1
Query: 448 TFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASMPWGDPNYRSANFIEHIQRRH 627
TF CP C E NF ++ L++HC H V CPIC S+PWGDP+ + NF+ H+ +RH
Sbjct: 62 TFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPICVSLPWGDPSQITRNFVSHLNQRH 121
Query: 628 QFSYDTFVDYDVDEEDMMNQVLQRS 702
QF Y FV+ +DEE ++ S
Sbjct: 122 QFDYGEFVNLQLDEETQYQTAVEES 146
>ref|NP_064507.3| E3 ubiquitin-protein ligase KCMF1 [Homo sapiens].
Length = 381
Score = 62.0 bits (149), Expect = 1e-09
Identities = 25/71 (35%), Positives = 40/71 (56%)
Frame = +1
Query: 430 NVPNRYTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASMPWGDPNYRSANFIE 609
+V +F CPYC + + + L EH H+ + V+CPICA++P GDPN+ + +F
Sbjct: 71 SVEQPQSFTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAA 130
Query: 610 HIQRRHQFSYD 642
H+ H+ D
Sbjct: 131 HLTLEHRAPRD 141
>ref|NP_001158067.1| PDZ domain-containing RING finger protein 4 isoform 1 [Homo
sapiens].
Length = 1036
Score = 52.4 bits (124), Expect = 1e-06
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Frame = +1
Query: 115 CPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSTLAPG--VRAVELERQIES 288
C +C +V E+P+ PCGHVFC++CL ++ C + LAPG R + L I+
Sbjct: 18 CKLCGQVLEEPLCTPCGHVFCASCLLPWAVRRRR-CPLQCQPLAPGELYRVLPLRSLIQK 76
Query: 289 TETSC----HGCRKNFFLSKIRAHVATC 360
C GC + L ++ AHV C
Sbjct: 77 LRVQCDYRARGCGHSVRLHELEAHVEHC 104
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 60,389,724
Number of extensions: 1738300
Number of successful extensions: 6386
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 6340
Number of HSP's successfully gapped: 20
Length of query: 465
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 359
Effective length of database: 14,802,980
Effective search space: 5314269820
Effective search space used: 5314269820
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003320
(1395 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_109668.2| RING finger protein 114 [Mus musculus]. 446 e-125
Alignment gi|NP_001028314.1| RING finger protein 166 [Mus musculus]. 218 7e-57
Alignment gi|NP_997506.1| E3 ubiquitin-protein ligase RNF138 isoform 1 [M... 134 1e-31
Alignment gi|NP_080577.1| E3 ubiquitin-protein ligase RNF125 [Mus musculu... 86 7e-17
Alignment gi|NP_062680.2| E3 ubiquitin-protein ligase RNF138 isoform 2 [M... 77 4e-14
Alignment gi|NP_062689.2| E3 ubiquitin-protein ligase KCMF1 [Mus musculus]. 62 1e-09
Alignment gi|NP_001074619.1| LON peptidase N-terminal domain and RING fin... 51 2e-06
Alignment gi|NP_033572.2| E3 ubiquitin/ISG15 ligase TRIM25 [Mus musculus]. 50 4e-06
Alignment gi|NP_848917.2| tripartite motif-containing protein 65 [Mus mus... 50 6e-06
Alignment gi|NP_033450.2| TNF receptor-associated factor 6 [Mus musculus]. 50 6e-06
>ref|NP_109668.2| RING finger protein 114 [Mus musculus].
Length = 229
Score = 446 bits (1146), Expect = e-125
Identities = 203/227 (89%), Positives = 216/227 (95%)
Frame = +1
Query: 34 AAQPQDREGGAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKK 213
AAQP+ R+G AQ A PA+E DPL RFTCPVCLEV+EKPVQVPCGHVFCSACLQECLKPKK
Sbjct: 3 AAQPESRDGAAQSAKPASETDPLSRFTCPVCLEVFEKPVQVPCGHVFCSACLQECLKPKK 62
Query: 214 PVCGVCRSTLAPGVRAVELERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYIMEGV 393
PVCGVCRS LAPGVRAVELERQIES ETSCHGCRKNF LSKIRAHV +CSKYQNYIMEGV
Sbjct: 63 PVCGVCRSALAPGVRAVELERQIESIETSCHGCRKNFILSKIRAHVTSCSKYQNYIMEGV 122
Query: 394 KATTKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASMPW 573
KATTKDASLQPRN+PNRYTFPCPYCPEKNFDQEGLVEHCKL HSTDTKSVVCPICASMPW
Sbjct: 123 KATTKDASLQPRNIPNRYTFPCPYCPEKNFDQEGLVEHCKLTHSTDTKSVVCPICASMPW 182
Query: 574 GDPNYRSANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRSLLDQ 714
GDP+YRSANF+EHIQRRH+FSYDTFVDYDVDE+DM+NQVLQRS++DQ
Sbjct: 183 GDPSYRSANFMEHIQRRHRFSYDTFVDYDVDEDDMINQVLQRSIIDQ 229
>ref|NP_001028314.1| RING finger protein 166 [Mus musculus].
Length = 237
Score = 218 bits (556), Expect = 7e-57
Identities = 103/217 (47%), Positives = 137/217 (63%), Gaps = 6/217 (2%)
Frame = +1
Query: 73 AGPAAEADPL-GRFTCPVCLEVYEKPVQV-PCGHVFCSACLQECLKPKKPVCGVCRSTLA 246
AGPA L +F+CP+CLEVY +PV + CGH FC CLQ CL+ P+C +CR
Sbjct: 18 AGPAGGDSGLEAQFSCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRLPFD 77
Query: 247 PGV--RAVELERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYIMEGVKATTKDASL 420
P +A +E+Q+ S + C GC K L+K+RAH+++C K Q + K +
Sbjct: 78 PKKVDKATHVEKQLSSYKAPCRGCNKKVTLAKMRAHISSCLKVQEQMANCPKFVPVVPTS 137
Query: 421 QP--RNVPNRYTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASMPWGDPNYRS 594
QP N+PNR TF CPYC +N DQ+ LV+HC H +D VVCPIC++MPWGDP+Y+S
Sbjct: 138 QPIPSNIPNRSTFACPYCGARNLDQQELVKHCVESHRSDPNRVVCPICSAMPWGDPSYKS 197
Query: 595 ANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRSL 705
ANF++H+ RH+FSYDTFVDY +DEE L SL
Sbjct: 198 ANFLQHLLHRHKFSYDTFVDYSIDEEAAFQAALALSL 234
>ref|NP_997506.1| E3 ubiquitin-protein ligase RNF138 isoform 1 [Mus musculus].
Length = 245
Score = 134 bits (338), Expect = 1e-31
Identities = 72/225 (32%), Positives = 106/225 (47%), Gaps = 27/225 (12%)
Frame = +1
Query: 109 FTCPVCLEVYEKPVQVP-CGHVFCSACLQECLKPKKPVCGVCRSTL-----APGVRAVEL 270
F CPVC EV + PV+ C HVFC C ++ C +CR ++ A RA++L
Sbjct: 16 FYCPVCQEVLKTPVRTAACQHVFCRKCFLTAMRESGIHCPLCRGSVTRRERACPERALDL 75
Query: 271 ERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYI------------MEGVKATTKDA 414
E + SC C K ++R H +C KYQ+ + V+++ +
Sbjct: 76 ENIMRRFSGSCRCCSKKIKFYRMRHHYKSCKKYQDEYGVSSVIPNFKISQDSVRSSNRSE 135
Query: 415 SLQPRNVPNRY---------TFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASM 567
+ N TF CP C E NF ++ L++HC H V CPIC S+
Sbjct: 136 TSASDNTETYQEDTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPICVSL 195
Query: 568 PWGDPNYRSANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRS 702
PWGDP+ + NF+ H+ +RHQF Y FV+ +DEE ++ S
Sbjct: 196 PWGDPSQITRNFVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEES 240
>ref|NP_080577.1| E3 ubiquitin-protein ligase RNF125 [Mus musculus].
Length = 140
Score = 85.9 bits (211), Expect = 7e-17
Identities = 46/144 (31%), Positives = 77/144 (53%)
Frame = +1
Query: 280 IESTETSCHGCRKNFFLSKIRAHVATCSKYQNYIMEGVKATTKDASLQPRNVPNRYTFPC 459
++S +C C LS +RAH+ TC KY + G D + + C
Sbjct: 1 MKSEYQNCAECGTLVCLSDMRAHIRTCEKYIDKY--GPLLELGDTTAR---------CVC 49
Query: 460 PYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASMPWGDPNYRSANFIEHIQRRHQFSY 639
P+C ++ D++ L++HC + H ++ + V CP+C S P P+ + + I H+Q H Y
Sbjct: 50 PFC-QRELDEDCLLDHCIIHHRSERRPVFCPLCHSRPDESPSTFNGSLIRHLQVSHTLFY 108
Query: 640 DTFVDYDVDEEDMMNQVLQRSLLD 711
D F+D+D+ EE ++ +VL RSLL+
Sbjct: 109 DDFIDFDIIEEAIIRRVLDRSLLE 132
>ref|NP_062680.2| E3 ubiquitin-protein ligase RNF138 isoform 2 [Mus musculus].
Length = 209
Score = 76.6 bits (187), Expect = 4e-14
Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 27/165 (16%)
Frame = +1
Query: 109 FTCPVCLEVYEKPVQVP-CGHVFCSACLQECLKPKKPVCGVCRSTL-----APGVRAVEL 270
F CPVC EV + PV+ C HVFC C ++ C +CR ++ A RA++L
Sbjct: 16 FYCPVCQEVLKTPVRTAACQHVFCRKCFLTAMRESGIHCPLCRGSVTRRERACPERALDL 75
Query: 271 ERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYI------------MEGVKATTKDA 414
E + SC C K ++R H +C KYQ+ + V+++ +
Sbjct: 76 ENIMRRFSGSCRCCSKKIKFYRMRHHYKSCKKYQDEYGVSSVIPNFKISQDSVRSSNRSE 135
Query: 415 SLQPRNVPNRY---------TFPCPYCPEKNFDQEGLVEHCKLVH 522
+ N TF CP C E NF ++ L++HC H
Sbjct: 136 TSASDNTETYQEDTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNH 180
>ref|NP_062689.2| E3 ubiquitin-protein ligase KCMF1 [Mus musculus].
Length = 381
Score = 62.0 bits (149), Expect = 1e-09
Identities = 25/71 (35%), Positives = 40/71 (56%)
Frame = +1
Query: 430 NVPNRYTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASMPWGDPNYRSANFIE 609
+V +F CPYC + + + L EH H+ + V+CPICA++P GDPN+ + +F
Sbjct: 71 SVEQPQSFTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAA 130
Query: 610 HIQRRHQFSYD 642
H+ H+ D
Sbjct: 131 HLTLEHRAPRD 141
>ref|NP_001074619.1| LON peptidase N-terminal domain and RING finger protein 1 [Mus
musculus].
Length = 837
Score = 51.2 bits (121), Expect = 2e-06
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +1
Query: 109 FTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSTL 243
F C +C+ ++ +PV PCGH FC CL+ CL P C +C+ +L
Sbjct: 541 FECSLCMRLFFEPVTTPCGHSFCKNCLERCL-DHAPYCPLCKESL 584
>ref|NP_033572.2| E3 ubiquitin/ISG15 ligase TRIM25 [Mus musculus].
Length = 634
Score = 50.1 bits (118), Expect = 4e-06
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Frame = +1
Query: 85 AEADPLGR-FTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPV--CGVCR 234
AE +PL +C VCLE++++PV PCGH FC +CL E + P C CR
Sbjct: 2 AELNPLAEELSCSVCLELFKEPVTTPCGHNFCMSCLDETWVVQGPPYRCPQCR 54
>ref|NP_848917.2| tripartite motif-containing protein 65 [Mus musculus].
Length = 522
Score = 49.7 bits (117), Expect = 6e-06
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +1
Query: 112 TCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSTLAPGVR 258
TC +CL Y PV +PCGH FC C+Q+ + + C CR G +
Sbjct: 12 TCSICLGRYRDPVTLPCGHSFCGNCIQDSWRSCEKSCPECRQPFPEGAK 60
>ref|NP_033450.2| TNF receptor-associated factor 6 [Mus musculus].
Length = 530
Score = 49.7 bits (117), Expect = 6e-06
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Frame = +1
Query: 67 QLAGPAAEADPL--GRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRST 240
++ G E DP ++ CP+CL + VQ PCGH FC AC+ + ++ C V
Sbjct: 52 EIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEI 111
Query: 241 LAPGVRAVE--LERQIESTETSC--HGCRKNFFLSKIRAHVATC 360
L + +R+I S C GC + L + H C
Sbjct: 112 LLENQLFPDNFAKREILSLTVKCPNKGCLQKMELRHLEDHQVHC 155
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,192,854
Number of extensions: 1465159
Number of successful extensions: 5290
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 5241
Number of HSP's successfully gapped: 17
Length of query: 465
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 360
Effective length of database: 12,463,779
Effective search space: 4486960440
Effective search space used: 4486960440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003320
(1395 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001869.1| RING finger protein 114 [Sus scrofa]. 487 e-138
Alignment gi|XP_003133231.2| PREDICTED: RING finger protein 114-like, par... 216 3e-56
Alignment gi|XP_003127936.2| PREDICTED: e3 ubiquitin-protein ligase RNF12... 137 1e-32
Alignment gi|XP_003127930.1| PREDICTED: e3 ubiquitin-protein ligase RNF13... 134 9e-32
Alignment gi|XP_003356446.1| PREDICTED: e3 ubiquitin-protein ligase RNF13... 92 5e-19
Alignment gi|XP_003125018.2| PREDICTED: hypothetical protein LOC100524080... 62 1e-09
Alignment gi|XP_003361760.1| PREDICTED: LOW QUALITY PROTEIN: tripartite m... 53 4e-07
Alignment gi|XP_003126660.1| PREDICTED: PDZ domain-containing RING finger... 53 4e-07
Alignment gi|XP_003134232.2| PREDICTED: LON peptidase N-terminal domain a... 51 1e-06
Alignment gi|NP_001157121.1| 52 kDa Ro protein [Sus scrofa]. 50 2e-06
>ref|NP_001001869.1| RING finger protein 114 [Sus scrofa].
Length = 228
Score = 487 bits (1253), Expect = e-138
Identities = 228/228 (100%), Positives = 228/228 (100%)
Frame = +1
Query: 31 MAAQPQDREGGAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPK 210
MAAQPQDREGGAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPK
Sbjct: 1 MAAQPQDREGGAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPK 60
Query: 211 KPVCGVCRSTLAPGVRAVELERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYIMEG 390
KPVCGVCRSTLAPGVRAVELERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYIMEG
Sbjct: 61 KPVCGVCRSTLAPGVRAVELERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYIMEG 120
Query: 391 VKATTKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASMP 570
VKATTKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASMP
Sbjct: 121 VKATTKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASMP 180
Query: 571 WGDPNYRSANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRSLLDQ 714
WGDPNYRSANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRSLLDQ
Sbjct: 181 WGDPNYRSANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRSLLDQ 228
>ref|XP_003133231.2| PREDICTED: RING finger protein 114-like, partial [Sus scrofa].
Length = 203
Score = 216 bits (549), Expect = 3e-56
Identities = 118/204 (57%), Positives = 140/204 (68%), Gaps = 3/204 (1%)
Frame = +1
Query: 175 CSACLQECLKPKKPVCGVCRSTLAPGVRAVELERQIESTETSCHGCRKNFFLSKIRAHVA 354
CS CLQECLK KKPV G STLAPG+ AVEL QIESTE SC GC KN FLS+I+ H A
Sbjct: 6 CSVCLQECLKLKKPVSGAQGSTLAPGIPAVELT-QIESTEASCLGCCKNSFLSQIQVHGA 64
Query: 355 TCSKYQNYIMEGVKATTKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLVHSTDT 534
TC K QNYI EG+K TKD +L+P+NVP+RY FPCP C E NFD+ GLVEHC+L+HS DT
Sbjct: 65 TCLKSQNYITEGMKVITKDVTLRPKNVPSRYIFPCPCCLE-NFDRGGLVEHCQLIHSMDT 123
Query: 535 KSVVCPICASMPWGDPNYRSANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRSLLDQ 714
KSVV P+CAS+PWG+ + S +FI QFSY T V+YDVDEE + S + +
Sbjct: 124 KSVVYPMCASIPWGERSSHSTDFIAPT----QFSYGTLVNYDVDEERDAPGMAAPSTIYE 179
Query: 715 *AGAGSRASTV---CPRETCDSST 777
A + A + RE CDSST
Sbjct: 180 WALLSACAPELPLRSKREACDSST 203
>ref|XP_003127936.2| PREDICTED: e3 ubiquitin-protein ligase RNF125-like [Sus scrofa].
Length = 232
Score = 137 bits (345), Expect = 1e-32
Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 1/206 (0%)
Frame = +1
Query: 97 PLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSTL-APGVRAVELE 273
P+ F C VCLEV PV+ CGHVFC +C+ LK K C CR+ L + GV A ++
Sbjct: 31 PVTSFDCSVCLEVLHHPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSEGVPATDVA 90
Query: 274 RQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYIMEGVKATTKDASLQPRNVPNRYTF 453
++++S +C C LS++RAH+ TC KY + K LQ
Sbjct: 91 KRMKSEFQNCTECDTLVCLSEMRAHIRTCQKYID----------KYGPLQELGETATRCI 140
Query: 454 PCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASMPWGDPNYRSANFIEHIQRRHQF 633
CP+C ++ D++ L++HC H ++ + V CP+C +P +P + + I H+Q H
Sbjct: 141 -CPFC-QRELDEDSLLDHCITHHRSERRPVFCPLCRLIPNENPGSFTGSLIRHLQVNHTL 198
Query: 634 SYDTFVDYDVDEEDMMNQVLQRSLLD 711
YD F+D+++ EE ++ +VL RSLL+
Sbjct: 199 FYDDFIDFNIIEEALIQRVLDRSLLE 224
>ref|XP_003127930.1| PREDICTED: e3 ubiquitin-protein ligase RNF138-like isoform 1 [Sus
scrofa].
Length = 245
Score = 134 bits (338), Expect = 9e-32
Identities = 74/227 (32%), Positives = 105/227 (46%), Gaps = 29/227 (12%)
Frame = +1
Query: 109 FTCPVCLEVYEKPVQVP-CGHVFCSACLQECLKPKKPVCGVCRSTL-----APGVRAVEL 270
F CPVC EV + PV+ C HVFC C ++ C +CR + A RA++L
Sbjct: 16 FYCPVCQEVLKTPVRTAACQHVFCRKCFLTAMRESGIHCPLCRGNVTRRERACPERALDL 75
Query: 271 ERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYIMEGVKATTKDASLQPRNVPNRY- 447
E + SC C K ++R H +C KYQ+ GV + + + +V N
Sbjct: 76 ENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEY--GVSSIIPNFQISQDSVGNSNR 133
Query: 448 ----------------------TFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICA 561
TF CP C E NF ++ L++HC H V CPIC
Sbjct: 134 SETSTSDNTETYQENTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPICV 193
Query: 562 SMPWGDPNYRSANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRS 702
S+PWGDP+ + NF+ H+ +RHQF Y FV+ +DEE ++ S
Sbjct: 194 SLPWGDPSQITRNFVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEES 240
>ref|XP_003356446.1| PREDICTED: e3 ubiquitin-protein ligase RNF138-like isoform 2 [Sus
scrofa].
Length = 151
Score = 92.4 bits (228), Expect = 5e-19
Identities = 37/85 (43%), Positives = 51/85 (60%)
Frame = +1
Query: 448 TFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASMPWGDPNYRSANFIEHIQRRH 627
TF CP C E NF ++ L++HC H V CPIC S+PWGDP+ + NF+ H+ +RH
Sbjct: 62 TFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPICVSLPWGDPSQITRNFVSHLNQRH 121
Query: 628 QFSYDTFVDYDVDEEDMMNQVLQRS 702
QF Y FV+ +DEE ++ S
Sbjct: 122 QFDYGEFVNLQLDEETQYQTAVEES 146
>ref|XP_003125018.2| PREDICTED: hypothetical protein LOC100524080 [Sus scrofa].
Length = 981
Score = 61.6 bits (148), Expect = 1e-09
Identities = 24/67 (35%), Positives = 39/67 (58%)
Frame = +1
Query: 430 NVPNRYTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASMPWGDPNYRSANFIE 609
+V +F CPYC + + + L EH H+ + V+CPICA++P GDPN+ + +F
Sbjct: 548 SVEQPQSFTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAA 607
Query: 610 HIQRRHQ 630
H+ H+
Sbjct: 608 HLTLEHR 614
>ref|XP_003361760.1| PREDICTED: LOW QUALITY PROTEIN: tripartite motif-containing protein
7-like [Sus scrofa].
Length = 453
Score = 53.1 bits (126), Expect = 4e-07
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +1
Query: 25 GKMAAQPQDREGGAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQEC 198
G+ A+ G A+LA A+ G TC +CLE++ +PV V CGH FC AC+ C
Sbjct: 46 GRCTAKSSSFPGAAKLA---LAAELQGEATCSICLELFREPVSVECGHSFCRACIARC 100
>ref|XP_003126660.1| PREDICTED: PDZ domain-containing RING finger protein 4-like isoform
1 [Sus scrofa].
Length = 1042
Score = 53.1 bits (126), Expect = 4e-07
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Frame = +1
Query: 109 FTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSTLAPG--VRAVELERQI 282
F C +C +V E+P+ PCGHVFC+ CL+ + C + LAPG R + L +
Sbjct: 16 FQCRLCGQVLEEPLCTPCGHVFCARCLRPWAARWRR-CPLQCQPLAPGELYRVLPLRSLV 74
Query: 283 ESTETSC----HGCRKNFFLSKIRAHVATC 360
+ C GC ++ L ++ AHV C
Sbjct: 75 QKLRIQCDYRARGCGRSVRLRELAAHVERC 104
>ref|XP_003134232.2| PREDICTED: LON peptidase N-terminal domain and RING finger protein
1 [Sus scrofa].
Length = 835
Score = 51.2 bits (121), Expect = 1e-06
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +1
Query: 109 FTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSTL 243
F C +C+ ++ +PV PCGH FC CL+ CL P C +C+ +L
Sbjct: 539 FECSLCMRLFFEPVTTPCGHSFCKNCLERCL-DHTPYCPLCKESL 582
>ref|NP_001157121.1| 52 kDa Ro protein [Sus scrofa].
Length = 469
Score = 50.4 bits (119), Expect = 2e-06
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +1
Query: 85 AEADPLGRF----TCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCR 234
A A PL R TC +CL+ +PV + CGH FC C+ E K VC VCR
Sbjct: 2 ASALPLARMWDEVTCSICLDPMVEPVSIECGHSFCQECISEVGKDGGSVCPVCR 55
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,047,983
Number of extensions: 1108073
Number of successful extensions: 4075
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 4043
Number of HSP's successfully gapped: 17
Length of query: 465
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 363
Effective length of database: 8,804,438
Effective search space: 3196010994
Effective search space used: 3196010994
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003320
(1395 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896090.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 1413 0.0
Sscrofa_Chr05 307 9e-81
Sscrofa_Chr14 270 2e-69
Sscrofa_Chr15 90 4e-15
>gb|GL896090.1| Sus scrofa unplaced genomic scaffold chrU_scaffold465
Length = 45777
Score = 1413 bits (713), Expect = 0.0
Identities = 737/745 (98%)
Strand = Plus / Plus
Query: 651 ggattacgacgttgacgaagaggacatgatgaaccaagtgctgcaacgctccctccttga 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15776 ggattacgacgttgacgaagaggacatgatgaaccaagtgctgcaacgctccctccttga 15835
Query: 711 ccagtgagcaggcgcgggctccagagcttccactgtgtgtccgcgtgaaacatgtgactc 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15836 ccagtgagcaggcgcgggctccagagcttccactgtgtgtccgcgtgaaacatgtgactc 15895
Query: 771 ttccacctaaaatgtcccacagacctggaagtgagccttggtgttgggacggggtcactt 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15896 ttccacctaaaatgtcccacagacctggaagtgagccttggtgttgggacggggtcactt 15955
Query: 831 ctgacaggggaacaggtccccagtcaagccctcctttccttggggctcttcccctactgc 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15956 ctgacaggggaacaggtccccagtcaagccctcctttccttggggctcttcccctactgc 16015
Query: 891 tcactgtttgtcatctgtccggttttttcctgctcctcagccatttcctggagcttttgc 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16016 tcactgtttgtcatctgtccggttttttcctgctcctcagccatttcctggagcttttgc 16075
Query: 951 ctcctctttggaagggaacccagctttccacctgtcctcgtttcatgcctgcttctcctg 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16076 ctcctctttggaagggaacccagctttccacctgtcctcgtttcatgcctgcttctcctg 16135
Query: 1011 tccactgttgatctctcaggtcctccgaaccagccaggaccttttctgggtcatgagtag 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16136 tccactgttgatctctcaggtcctccgaaccagccaggaccttttctgggtcatgagtag 16195
Query: 1071 cacaaatgaaacaagcatctcctccccttgtccccaaggggtgtgagcgccagcaagaat 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16196 cacaaatgaaacaagcatctcctccccttgtccccaaggggtgtgagcgccagcaagaat 16255
Query: 1131 ggggtgatgggtgatggagcgccccctcctgtgctgtgcaggttcctgttggttggtcct 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16256 ggggtgatgggtgatggagcgccccctcctgtgctgtgcaggttcctgttggttggtcct 16315
Query: 1191 tggcggcagctgccaggagctagagttacctcatgggaaacatttcacaggtcttggtta 1250
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 16316 tggcggcagctgccaggagctagagttacctcatgggaaacatttcacaggtcttgttag 16375
Query: 1251 ggtggatgttctgggttgaacatggtctgatgctggaagttttgatgagtgagattttcc 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16376 ggtggatgttctgggttgaacatggtctgatgctggaagttttgatgagtgagattttcc 16435
Query: 1311 tatcattcctgcacacccttaggatttaactggttcagaacttaatgcctgcatggtgcc 1370
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 16436 tatcattcctgcacacccttaggatttaactggttcagacttaaatgcctgcatggtgcc 16495
Query: 1371 tttttaggtaaggtgtcaccatgta 1395
|||| |||||||||||||||||||
Sbjct: 16496 ttttagggtaaggtgtcaccatgta 16520
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 171 cttttgctctgcatgcctgcaggaatgtctgaagccgaagaagcctgtctgtggggtgtg 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7372 cttttgctctgcatgcctgcaggaatgtctgaagccgaagaagcctgtctgtggggtgtg 7431
Query: 231 tcgcagcactctggcccctggtgtccgagccgtggagctcgagcggcagattgagagcac 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7432 tcgcagcactctggcccctggtgtccgagccgtggagctcgagcggcagattgagagcac 7491
Query: 291 agagacttcttgccatggctgccgtaaaaat 321
|||||||||||||||||||||||||||||||
Sbjct: 7492 agagacttcttgccatggctgccgtaaaaat 7522
Score = 236 bits (119), Expect = 3e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 427 aggaatgtcccaaaccgttatacttttccttgtccttactgtcctgagaagaattttgat 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10685 aggaatgtcccaaaccgttatacttttccttgtccttactgtcctgagaagaattttgat 10744
Query: 487 caagaagggcttgtggaacactgcaaattagtccatagcacggacaccaaatctgtggt 545
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10745 caagaagggcttgtggaacactgcaaattagtccatagcacggacaccaaatctgtggt 10803
Score = 218 bits (110), Expect = 6e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 543 ggtttgtccaatatgtgcctcgatgccgtggggagaccccaactaccggagcgccaactt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14192 ggtttgtccaatatgtgcctcgatgccgtggggagaccccaactaccggagcgccaactt 14251
Query: 603 catagaacacatccagcgtcggcaccagttttcctacgacactttcgtgg 652
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14252 catagaacacatccagcgtcggcaccagttttcctacgacactttcgtgg 14301
Score = 214 bits (108), Expect = 1e-52
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 322 tttttcctatccaagatccgggcacacgtggctacctgttccaaataccagaattacatc 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10262 tttttcctatccaagatccgggcacacgtggctacctgttccaaataccagaattacatc 10321
Query: 382 atggaaggtgtgaaggccaccaccaaggatgcgtcccttcagccaagg 429
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10322 atggaaggtgtgaaggccaccaccaaggatgcgtcccttcagccaagg 10369
>Sscrofa_Chr05
|| Length = 111506441
Score = 307 bits (155), Expect = 9e-81
Identities = 469/568 (82%), Gaps = 28/568 (4%)
Strand = Plus / Plus
Query: 125 gcctagaggtgtacgagaagccggtgcaggtgccctgcggacacgtcttttgctctgcat 184
||||||||||||| |||||| | |||||||||||||| ||||| ||||||| ||||||
Sbjct: 38613760 gcctagaggtgtatgagaagtcagtgcaggtgccctgtggacatgtcttttcctctgcgc 38613819
Query: 185 gcctgcaggaatgtctgaagccgaagaagcctgtctgtggggtgtgtcgcagcactctgg 244
|||||||| ||| |||||||| |||||||||| |||||||| ||||| || |||||
Sbjct: 38613820 gcctgcagaaatctctgaagctgaagaagcctttctgtgggatgtgtggc-----tctgg 38613874
Query: 245 cccctggtgtccgagccgtggagctcgagcggcagattgagagcacagagacttcttgcc 304
| ||||| ||| |||||||||||||| |||||||| ||||| |||||| |||||||||||
Sbjct: 38613875 cacctggcgtcagagccgtggagctccagcggcaggttgagggcacagcgacttcttgcc 38613934
Query: 305 atggctgccgtaaaaattttttcctatccaagatccgggcacacgtggctacctgttcca 364
|| |||| |||||||| | |||||| |||||| ||| |||||| |||||
Sbjct: 38613935 gtgactgctgtaaaaatct---cctatctaagatctgggtgcacgtg--------ttcca 38613983
Query: 365 aataccagaattacatcatggaaggtgtgaaggccaccaccaaggatgcgtcccttcagc 424
||| | |||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 38613984 gatagctgaattacatcgtggaaggtgtgaaggccaccaccaaggatgggtcccttcagc 38614043
Query: 425 caaggaatgtcccaaaccgttatacttttccttgtcctt-actgtcctgagaagaatttt 483
||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||||
Sbjct: 38614044 caaggaatgtcccaaaccgttatgcgtttccttgtccttaagtgtcctgagaagaatttt 38614103
Query: 484 gatcaagaagggcttgtggaacactgcaaattagtccatagcacggacaccaaatctgtg 543
||||||||||| ||| ||||||||| | || || ||||| | |||| | |||||
Sbjct: 38614104 gatcaagaaggtctt---gaacactgccagctatcccttagcatgaacacgagatctgca 38614160
Query: 544 gtttgtccaata----tgtgcctcgatgccgtggggagaccccaactacc-ggagcgcca 598
|| |||||| || |||||| | ||| ||||||||||||| ||||| | ||| |||
Sbjct: 38614161 gtctgtccagtacgtgcgtgcctgaacgccctggggagaccccagctacctgcagcacca 38614220
Query: 599 acttcatagaacacatccagcgtcggcaccagttttcctacgacactttcgtggattacg 658
|||||||||| || |||||||| ||||||||||||| | ||||||||| || |||| |
Sbjct: 38614221 acttcatagagcatatccagcg-cggcaccagtttttacaggacactttcttgaattatg 38614279
Query: 659 acgttgacgaagaggacatgatgaacca 686
|| ||| |||||||||| |||||||||
Sbjct: 38614280 ac--tgatgaagaggacacgatgaacca 38614305
Score = 186 bits (94), Expect = 2e-44
Identities = 283/339 (83%), Gaps = 9/339 (2%)
Strand = Plus / Plus
Query: 756 tgaaacatgtgactcttccacctaaaatgtcccacagacctggaagtgagccttggtgtt 815
|||||||||||||| |||||||||||||| | ||| ||||||||||||||| |||| ||
Sbjct: 38614387 tgaaacatgtgacttatccacctaaaatgtacgacacacctggaagtgagccatggtatt 38614446
Query: 816 gggacggggtcacttctgacaggggaacaggtcc-ccagtc-aagccctcctttccttgg 873
|||| ||||||||| |||||||| ||||| ||| || ||| ||||||| |||||||| |
Sbjct: 38614447 aggacagggtcacttgtgacagggaaacagatccaccggtcaaagccct-ctttcctttg 38614505
Query: 874 ggctcttcccctactgctca--ctgtttgtcatctgtccggttttttcctgctcctcagc 931
|||||||||| ||||| ||| ||||||||| | || ||| |||| |||||| |||||
Sbjct: 38614506 ggctcttcccttactgttcatcttgtttgtcacatatctggtcttttactgctcttcagc 38614565
Query: 932 catttcctggagcttttgcctcctctttggaagggaacccag-ctttccacctgtc---c 987
||||| ||||| ||| |||||||||||| ||||||||||||| | ||||||||| |
Sbjct: 38614566 cattttctggaacttctgcctcctctttagaagggaacccagccccgccacctgtccttc 38614625
Query: 988 tcgtttcatgcctgcttctcctgtccactgttgatctctcaggtcctccgaaccagccag 1047
| | |||||| |||| |||||| || ||||||||||| |||| || || ||||||||
Sbjct: 38614626 ttgcttcatgtttgctcctcctgaacagtgttgatctctgaggtattctgagccagccag 38614685
Query: 1048 gaccttttctgggtcatgagtagcacaaatgaaacaagc 1086
||| ||||||||||||||| |||||||||||| ||||||
Sbjct: 38614686 gactttttctgggtcatgaatagcacaaatgagacaagc 38614724
Score = 67.9 bits (34), Expect = 1e-08
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1283 ctggaagttttgatgagtgagattttcctatcattcctgcacacccttaggatttaactg 1342
|||||||||||| ||||||| ||||||||| ||||| | |||||| |||||| |||||||
Sbjct: 38615167 ctggaagttttggtgagtgacattttcctaccattctttcacacctttagga-ttaactg 38615225
Query: 1343 gttcag 1348
||||||
Sbjct: 38615226 gttcag 38615231
>Sscrofa_Chr14
|| Length = 153851969
Score = 270 bits (136), Expect = 2e-69
Identities = 338/404 (83%), Gaps = 6/404 (1%)
Strand = Plus / Minus
Query: 175 tgctctgcatgcctgcaggaatgtctgaagccgaagaagcctgtctgtggggtgtgtcgc 234
||||||| |||||||||||||||||||||| |||||||||||| | ||||| ||
Sbjct: 132675160 tgctctgtgtgcctgcaggaatgtctgaagctgaagaagcctgtttctggggcacagggc 132675101
Query: 235 agcactctggcccctggtgtccgagccgtggagctcgagcggcagattgagagcacagag 294
||||||||||||||||| | | ||||||||||||| |||||||||||||||||||
Sbjct: 132675100 agcactctggcccctggcattccagccgtggagctc---acgcagattgagagcacagag 132675044
Query: 295 acttcttgccatggctgccgtaaaaattttttcctatccaagatccgggcacacgtggct 354
||||||||| ||| ||| ||||||||| ||||||||| |||||| || |||| ||||
Sbjct: 132675043 gcttcttgccttgggtgctgtaaaaattccttcctatcccagatccaggtccacggggct 132674984
Query: 355 acctgttccaaataccagaattacatcatggaaggtgtgaaggccaccaccaaggatgcg 414
|||||| ||||| |||||||||||||| ||||||| |||||| || ||||||||||| |
Sbjct: 132674983 acctgtctcaaatcccagaattacatcacggaaggtatgaaggtcatcaccaaggatgtg 132674924
Query: 415 tcccttcagccaaggaatgtcccaaaccgttatacttttccttgtccttactgtcctgag 474
|||||| ||||| ||||||||||| ||||||| ||||||||| |||| ||||| |
Sbjct: 132674923 acccttcggccaaagaatgtcccaagtcgttatatttttccttgcccttgctgtc---tg 132674867
Query: 475 aagaattttgatcaagaagggcttgtggaacactgcaaattagtccatagcacggacacc 534
|||||||||||| | ||| |||||||| |||||| | ||| ||||||||| |||||||
Sbjct: 132674866 gagaattttgatcgcggaggacttgtggagcactgccagttaatccatagcatggacacc 132674807
Query: 535 aaatctgtggtttgtccaatatgtgcctcgatgccgtggggaga 578
||||| ||||||| |||||| ||||||||||| || ||||||||
Sbjct: 132674806 aaatcggtggtttatccaatgtgtgcctcgattccctggggaga 132674763
Score = 115 bits (58), Expect = 7e-23
Identities = 352/443 (79%), Gaps = 9/443 (2%)
Strand = Plus / Minus
Query: 856 aagccctcctttccttggggctcttcccctactgctcact--gtttgtcatctgtccggt 913
||||||||||||| | ||||||||||||||||| ||||| |||||||| | || |||
Sbjct: 132673879 aagccctcctttcatctgggctcttcccctactgttcactctgtttgtcacttctctggt 132673820
Query: 914 tttttcctgctcctcagccatttcctggagcttttgcctcctctttggaagggaacccag 973
|||| ||||||||||||| ||| |||||||| |||||||||| ||||||| |||||||
Sbjct: 132673819 cttttattgctcctcagccagttc-tggagcttctgcctcctctgtggaaggaaacccag 132673761
Query: 974 ctt-tccacctgtcctcgtttcatgcctgcttctcctgtccactgttgatctctcaggtc 1032
||| || | | || ||||| || | ||| ||| |||| |||||||||| || | |
Sbjct: 132673760 cttctctgcttctcttcgtt-cacgtttgcacctcttgtctggtgttgatctcccaagcc 132673702
Query: 1033 ctccgaaccagccaggaccttttctgggtcatgagtagcacaaatgaaacaagcatctcc 1092
||| || |||||||| ||||||||||||||| |||||||||||| ||| |||| |||
Sbjct: 132673701 ttccaaatcagccaggtttttttctgggtcatgaatagcacaaatgagacaggcatttcc 132673642
Query: 1093 tccccttgtccccaaggggtgtgagcgccagcaagaatgggg-tgatgggtgatggagcg 1151
|||||||||||| ||| |||||||| | ||| || | |||| || || |||
Sbjct: 132673641 tccccttgtccctgaggtgtgtgagccctggcagtaacgtatctgatcagtagtgtagct 132673582
Query: 1152 ccccctcctgtgctgtgcaggttcctgttggttggtccttggcggcagctgccaggagct 1211
|| | || ||||||||| |||||| || ||||||||||||| ||||||||||| ||||
Sbjct: 132673581 cc---ttctttgctgtgcaagttcctattagttggtccttggcagcagctgccagaagct 132673525
Query: 1212 agagttacctcatgggaaacatttcacaggtcttggttaggtggatgttctgggttgaac 1271
||||||||||||||| |||||||| ||| || | | || |||||||||||| |||
Sbjct: 132673524 ggagttacctcatgggccacatttcatgagtcctgttgggttgaatgttctgggtttaac 132673465
Query: 1272 atggtctgatgctggaagttttg 1294
| ||||||||||||||||||||
Sbjct: 132673464 acagtctgatgctggaagttttg 132673442
Score = 83.8 bits (42), Expect = 2e-13
Identities = 87/102 (85%)
Strand = Plus / Minus
Query: 753 gcgtgaaacatgtgactcttccacctaaaatgtcccacagacctggaagtgagccttggt 812
||||||| |||||||||| ||||||||||| || | |||||||||||||||||| ||
Sbjct: 132674591 gcgtgaagcatgtgactcatccacctaaaaggtacagcagacctggaagtgagccacagt 132674532
Query: 813 gttgggacggggtcacttctgacaggggaacaggtccccagt 854
|| |||| |||||||||||||||| ||||||||||||||
Sbjct: 132674531 attaggacacagtcacttctgacagggaaacaggtccccagt 132674490
>Sscrofa_Chr15
|| Length = 157681621
Score = 89.7 bits (45), Expect = 4e-15
Identities = 102/121 (84%)
Strand = Plus / Minus
Query: 130 gaggtgtacgagaagccggtgcaggtgccctgcggacacgtcttttgctctgcatgcctg 189
||||||| |||||||| || |||||| ||||| ||||||| |||||| || || ||||
Sbjct: 69168948 gaggtgtctgagaagccagtccaggtgtcctgcagacacgtgttttgccctacactcctg 69168889
Query: 190 caggaatgtctgaagccgaagaagcctgtctgtggggtgtgtcgcagcactctggcccct 249
|||| ||||||||||| || ||||||||||| |||| ||||| |||||||||||| |||
Sbjct: 69168888 taggagtgtctgaagccaaataagcctgtctgaggggcgtgtctcagcactctggcgcct 69168829
Query: 250 g 250
|
Sbjct: 69168828 g 69168828
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,071,211
Number of extensions: 217
Number of successful extensions: 217
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 18
Length of query: 1395
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1374
Effective length of database: 2,808,413,156
Effective search space: 3858759676344
Effective search space used: 3858759676344
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)