Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003325
(1345 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069062.1| target of EGR1 protein 1 [Bos taurus]. 648 0.0
Alignment gi|NP_001094588.1| poly(A)-specific ribonuclease PARN [Bos taur... 61 2e-09
>ref|NP_001069062.1| target of EGR1 protein 1 [Bos taurus].
Length = 524
Score = 648 bits (1671), Expect = 0.0
Identities = 315/363 (86%), Positives = 328/363 (90%)
Frame = +3
Query: 255 QSTKSEEELAIQVPVVDVQNDNFKEMWPSLLLAIKTASFVAVDTELSGLGDRKSLLNQCI 434
QSTKS EEL +QVPVVDVQ+DNFKEMWPSLLLAIKTA+FVAVDTELSGLGDRK LLNQCI
Sbjct: 22 QSTKSGEELVVQVPVVDVQSDNFKEMWPSLLLAIKTANFVAVDTELSGLGDRKCLLNQCI 81
Query: 435 EERYKAVCHAARTRSILSLGLACFKHQPDKGDHSYLVQVFNLTLLCMEEYVIEPKSVQFL 614
EERYKAVCHAARTRSILSLGLACFK QPDKG+HSYL QVFNLTLLCMEEYVIEPKSVQFL
Sbjct: 82 EERYKAVCHAARTRSILSLGLACFKQQPDKGEHSYLAQVFNLTLLCMEEYVIEPKSVQFL 141
Query: 615 VQHGFNFNRQYAQGIPYHKGNDKGDESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLYQ 794
VQHGFNFNRQYAQGIPYHKGNDKGDESQ QSVRTLFLELIRARRPLVLHNGLIDLVFLYQ
Sbjct: 142 VQHGFNFNRQYAQGIPYHKGNDKGDESQRQSVRTLFLELIRARRPLVLHNGLIDLVFLYQ 201
Query: 795 HFYAHLPESLGTFTADLCEMFPAGIYDTKYAAEFHARFVASYLEYAFRKCERENGKQRAA 974
+FYAHLPE+LGTFTADLCEMFPAGIYDTKYAAEFHARF+ASYLEYAFRKCERENGKQRAA
Sbjct: 202 NFYAHLPENLGTFTADLCEMFPAGIYDTKYAAEFHARFLASYLEYAFRKCERENGKQRAA 261
Query: 975 GSPHLTLEFCSYPSSMRAHIDYRCCMPPATSRPHSTSICDNFSAYGWCPLGPRCPRSHDI 1154
GSPHLTLEFCSYPSSMRAHIDYRCC PP T R HSTSICDNFSAYGWCPLGP+CPRSHDI
Sbjct: 262 GSPHLTLEFCSYPSSMRAHIDYRCCAPPPTYRTHSTSICDNFSAYGWCPLGPQCPRSHDI 321
Query: 1155 DLIIDTDEAVVEDKXXXXXXTGKRLKALLSLPARQTPGETEGGPPAQQVRGEGLKPEERE 1334
DLIIDTDEA +EDK KR +ALL LP +Q E E PP +QV + KPEE E
Sbjct: 322 DLIIDTDEAALEDKRRRRRRKEKRRRALLGLPGKQPSREAEDSPPTKQVCKDNRKPEETE 381
Query: 1335 PEV 1343
EV
Sbjct: 382 QEV 384
>ref|NP_001094588.1| poly(A)-specific ribonuclease PARN [Bos taurus].
Length = 638
Score = 61.2 bits (147), Expect = 2e-09
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 19/155 (12%)
Frame = +3
Query: 300 VDVQNDNFKEMWPSLLLAIKTASFVAVDTELSGLGDRKSLLN-----QCIEERYKAVCHA 464
+++ NFK + AI+ A F A+D E SG+ D S+ EERY+ +
Sbjct: 1 MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH 60
Query: 465 ARTRSILSLGLACFKHQPDKGDHSYLVQVFNLTLLCME--------EYVIEPKSVQFLVQ 620
+ + GL FK+ D D Y+ + FN + ++V + S+ FL
Sbjct: 61 SMDFLLFQFGLCTFKY--DYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLAS 118
Query: 621 HGFNFNRQYAQGIPY------HKGNDKGDESQSQS 707
GF+FN+ + GIPY + ++ DE +SQS
Sbjct: 119 QGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQS 153
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,674,874
Number of extensions: 1787082
Number of successful extensions: 9559
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9489
Number of HSP's successfully gapped: 2
Length of query: 448
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 343
Effective length of database: 14,207,134
Effective search space: 4873046962
Effective search space used: 4873046962
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003325
(1345 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532601.2| PREDICTED: similar to target of EGR1, member 1 ... 662 0.0
Alignment gi|XP_536966.2| PREDICTED: similar to poly(A)-specific ribonucl... 60 4e-09
Alignment gi|XP_541182.2| PREDICTED: similar to poly(A)-specific ribonucl... 53 6e-07
>ref|XP_532601.2| PREDICTED: similar to target of EGR1, member 1 (nuclear) [Canis
familiaris].
Length = 510
Score = 662 bits (1707), Expect = 0.0
Identities = 320/363 (88%), Positives = 336/363 (92%)
Frame = +3
Query: 255 QSTKSEEELAIQVPVVDVQNDNFKEMWPSLLLAIKTASFVAVDTELSGLGDRKSLLNQCI 434
+STKS EE +QVPVVDVQ+DNFKEMWPSLLLA+KTASFVAVDTELSGLGDRKSLLNQCI
Sbjct: 22 KSTKSGEEPVVQVPVVDVQSDNFKEMWPSLLLALKTASFVAVDTELSGLGDRKSLLNQCI 81
Query: 435 EERYKAVCHAARTRSILSLGLACFKHQPDKGDHSYLVQVFNLTLLCMEEYVIEPKSVQFL 614
EERYK+VCHAARTRS+LSLGLACFK QPDKG+HSYL QVFNLTLLCMEEYVIEPKSVQFL
Sbjct: 82 EERYKSVCHAARTRSVLSLGLACFKQQPDKGEHSYLAQVFNLTLLCMEEYVIEPKSVQFL 141
Query: 615 VQHGFNFNRQYAQGIPYHKGNDKGDESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLYQ 794
VQHGFNFNRQYAQGIPYHKGNDKG+ESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLYQ
Sbjct: 142 VQHGFNFNRQYAQGIPYHKGNDKGNESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLYQ 201
Query: 795 HFYAHLPESLGTFTADLCEMFPAGIYDTKYAAEFHARFVASYLEYAFRKCERENGKQRAA 974
+FYAHLPESLGTFTADLCEMFPAGIYDTKYAAEFHARFVASYLEYAFRKCERENGKQRAA
Sbjct: 202 NFYAHLPESLGTFTADLCEMFPAGIYDTKYAAEFHARFVASYLEYAFRKCERENGKQRAA 261
Query: 975 GSPHLTLEFCSYPSSMRAHIDYRCCMPPATSRPHSTSICDNFSAYGWCPLGPRCPRSHDI 1154
GSPHL+LEFCSYP SMRAHIDYRCCMPPAT RPHSTS+CDNFSAYGWCPLGP+CPRSHDI
Sbjct: 262 GSPHLSLEFCSYPPSMRAHIDYRCCMPPATHRPHSTSVCDNFSAYGWCPLGPQCPRSHDI 321
Query: 1155 DLIIDTDEAVVEDKXXXXXXTGKRLKALLSLPARQTPGETEGGPPAQQVRGEGLKPEERE 1334
DLIIDTDEAVVEDK KR +ALL LP +QT E E GPP +QV G+GLK EE E
Sbjct: 322 DLIIDTDEAVVEDKRRRRRRREKRRRALLGLPGKQTSEENEDGPPVKQVCGDGLKAEEIE 381
Query: 1335 PEV 1343
EV
Sbjct: 382 QEV 384
>ref|XP_536966.2| PREDICTED: similar to poly(A)-specific ribonuclease (deadenylation
nuclease) isoform 1 [Canis familiaris].
Length = 638
Score = 60.5 bits (145), Expect = 4e-09
Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Frame = +3
Query: 300 VDVQNDNFKEMWPSLLLAIKTASFVAVDTELSGLGDRKSLLN-----QCIEERYKAVCHA 464
+++ NFK + AIK A F A+D E SG+ D S+ EERY+ +
Sbjct: 1 MEIIRSNFKSNLHKVYEAIKEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH 60
Query: 465 ARTRSILSLGLACFKHQPDKGDHSYLVQVFNLTLLCME--------EYVIEPKSVQFLVQ 620
+ + GL FK+ D D Y+ + FN + ++V + S+ FL
Sbjct: 61 SMDFLLFQFGLCTFKY--DYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLAS 118
Query: 621 HGFNFNRQYAQGIPY 665
GF+FN+ + GIPY
Sbjct: 119 QGFDFNKVFRNGIPY 133
>ref|XP_541182.2| PREDICTED: similar to poly(A)-specific ribonuclease (PARN)-like
domain containing 1 [Canis familiaris].
Length = 511
Score = 53.1 bits (126), Expect = 6e-07
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Frame = +3
Query: 300 VDVQNDNFKEMWPSLLLAIKTASFVAVDTELSGLGDRKSLLNQCI-----EERYKAVCHA 464
+DV D F++ P L + A FV +D E +GL S Q E Y H+
Sbjct: 1 MDVGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSRPQQISLFDLPSEWYLKTRHS 60
Query: 465 ARTRSILSLGLACFKHQPDKGD----HSYLVQVFNLTLLCME-EYVIEPKSVQFLVQHGF 629
+ +I +GL+ F + + HS +F T ++ E+ + SVQFL Q+GF
Sbjct: 61 VQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPTTFGILDSEFSFQASSVQFLNQYGF 120
Query: 630 NFNRQYAQGIPY 665
++N+ GIPY
Sbjct: 121 DYNKFLKNGIPY 132
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,083,919
Number of extensions: 1840526
Number of successful extensions: 9657
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9601
Number of HSP's successfully gapped: 3
Length of query: 448
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 342
Effective length of database: 15,340,888
Effective search space: 5246583696
Effective search space used: 5246583696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003325
(1345 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079353.3| target of EGR1 protein 1 [Homo sapiens]. 655 0.0
Alignment gi|NP_002573.1| poly(A)-specific ribonuclease PARN isoform 1 [H... 60 5e-09
>ref|NP_079353.3| target of EGR1 protein 1 [Homo sapiens].
Length = 510
Score = 655 bits (1690), Expect = 0.0
Identities = 315/363 (86%), Positives = 334/363 (92%)
Frame = +3
Query: 255 QSTKSEEELAIQVPVVDVQNDNFKEMWPSLLLAIKTASFVAVDTELSGLGDRKSLLNQCI 434
+ST S EEL +QVPVVDVQ++NFKEMWPSLLLAIKTA+FVAVDTELSGLGDRKSLLNQCI
Sbjct: 22 KSTTSGEELVVQVPVVDVQSNNFKEMWPSLLLAIKTANFVAVDTELSGLGDRKSLLNQCI 81
Query: 435 EERYKAVCHAARTRSILSLGLACFKHQPDKGDHSYLVQVFNLTLLCMEEYVIEPKSVQFL 614
EERYKAVCHAARTRSILSLGLACFK QPDKG+HSYL QVFNLTLLCMEEYVIEPKSVQFL
Sbjct: 82 EERYKAVCHAARTRSILSLGLACFKRQPDKGEHSYLAQVFNLTLLCMEEYVIEPKSVQFL 141
Query: 615 VQHGFNFNRQYAQGIPYHKGNDKGDESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLYQ 794
+QHGFNFN+QYAQGIPYHKGNDKGDESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLYQ
Sbjct: 142 IQHGFNFNQQYAQGIPYHKGNDKGDESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLYQ 201
Query: 795 HFYAHLPESLGTFTADLCEMFPAGIYDTKYAAEFHARFVASYLEYAFRKCERENGKQRAA 974
+FYAHLPESLGTFTADLCEMFPAGIYDTKYAAEFHARFVASYLEYAFRKCERENGKQRAA
Sbjct: 202 NFYAHLPESLGTFTADLCEMFPAGIYDTKYAAEFHARFVASYLEYAFRKCERENGKQRAA 261
Query: 975 GSPHLTLEFCSYPSSMRAHIDYRCCMPPATSRPHSTSICDNFSAYGWCPLGPRCPRSHDI 1154
GSPHLTLEFC+YPSSMR HIDYRCC+PPAT RPH TSICDNFSAYGWCPLGP+CP+SHDI
Sbjct: 262 GSPHLTLEFCNYPSSMRDHIDYRCCLPPATHRPHPTSICDNFSAYGWCPLGPQCPQSHDI 321
Query: 1155 DLIIDTDEAVVEDKXXXXXXTGKRLKALLSLPARQTPGETEGGPPAQQVRGEGLKPEERE 1334
DLIIDTDEA EDK KR +ALL+LP QT GE + GPP +QV G+ +KPEE E
Sbjct: 322 DLIIDTDEAAAEDKRRRRRRREKRKRALLNLPGTQTSGEAKDGPPKKQVCGDSIKPEETE 381
Query: 1335 PEV 1343
EV
Sbjct: 382 QEV 384
>ref|NP_002573.1| poly(A)-specific ribonuclease PARN isoform 1 [Homo sapiens].
Length = 639
Score = 60.1 bits (144), Expect = 5e-09
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 19/155 (12%)
Frame = +3
Query: 300 VDVQNDNFKEMWPSLLLAIKTASFVAVDTELSGLGDRKS---LLN--QCIEERYKAVCHA 464
+++ NFK + AI+ A F A+D E SG+ D S L N EERY+ +
Sbjct: 1 MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH 60
Query: 465 ARTRSILSLGLACFKHQPDKGDHSYLVQVFNLTLLCME--------EYVIEPKSVQFLVQ 620
+ + GL FK+ D D Y+ + FN + ++V + S+ FL
Sbjct: 61 SMDFLLFQFGLCTFKY--DYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLAS 118
Query: 621 HGFNFNRQYAQGIPY------HKGNDKGDESQSQS 707
GF+FN+ + GIPY + ++ DE +SQ+
Sbjct: 119 QGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQA 153
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,710,804
Number of extensions: 1780904
Number of successful extensions: 9268
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9176
Number of HSP's successfully gapped: 2
Length of query: 448
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 342
Effective length of database: 14,802,980
Effective search space: 5062619160
Effective search space used: 5062619160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003325
(1345 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080930.1| target of EGR1 protein 1 [Mus musculus]. 613 e-175
Alignment gi|NP_083037.1| poly(A)-specific ribonuclease PARN [Mus musculu... 56 7e-08
Alignment gi|NP_001030038.1| poly(A)-specific ribonuclease PARN-like doma... 50 3e-06
>ref|NP_080930.1| target of EGR1 protein 1 [Mus musculus].
Length = 511
Score = 613 bits (1580), Expect = e-175
Identities = 297/365 (81%), Positives = 323/365 (88%), Gaps = 1/365 (0%)
Frame = +3
Query: 252 HQSTKSEEELAIQVPVVDVQNDNFKEMWPSLLLAIKTASFVAVDTELSGLGDRKSLLNQC 431
+++T+ EE ++VPVVDVQ+DNFKE+WPSLLLA+KTASFVAVDTELSGLGDRKSLLNQC
Sbjct: 21 NKNTQPAEEFVVRVPVVDVQSDNFKEIWPSLLLALKTASFVAVDTELSGLGDRKSLLNQC 80
Query: 432 IEERYKAVCHAARTRSILSLGLACFKHQPDKGDHSYLVQVFNLTLLCMEEYVIEPKSVQF 611
IEERYKAVCHAARTRS+LSLGLACF+ QPDKG++SYL QVFNLTLLC+EEYVIEPKSVQF
Sbjct: 81 IEERYKAVCHAARTRSVLSLGLACFRQQPDKGENSYLAQVFNLTLLCIEEYVIEPKSVQF 140
Query: 612 LVQHGFNFNRQYAQGIPYHKGNDKGDESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLY 791
LVQHGFNFNRQYAQGIPYHKGNDKGDESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLY
Sbjct: 141 LVQHGFNFNRQYAQGIPYHKGNDKGDESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLY 200
Query: 792 QHFYAHLPESLGTFTADLCEMFPAGIYDTKYAAEFHARFVASYLEYAFRKCERENGKQRA 971
Q+FYAHLPE+LGTFTADLCEMFPAGIYDTKYAAEFHARFVASYLEYAFRKCERENGKQRA
Sbjct: 201 QNFYAHLPENLGTFTADLCEMFPAGIYDTKYAAEFHARFVASYLEYAFRKCERENGKQRA 260
Query: 972 AGSPHLTLEFCSYPSSMRAHIDYRCCMPPAT-SRPHSTSICDNFSAYGWCPLGPRCPRSH 1148
AGSPHL LEFCSYPSSM HIDYRCCM P T R +T ICD FSAYGWCPLGP+CP+SH
Sbjct: 261 AGSPHLALEFCSYPSSMSGHIDYRCCMSPGTCRRSRTTGICDKFSAYGWCPLGPQCPQSH 320
Query: 1149 DIDLIIDTDEAVVEDKXXXXXXTGKRLKALLSLPARQTPGETEGGPPAQQVRGEGLKPEE 1328
DIDLIIDTDEAV EDK KR ++L S P QT E E GPP +QV + L+ E+
Sbjct: 321 DIDLIIDTDEAVAEDKRRRRRRKDKRKRSLQSQPGTQTLAEAEDGPPTKQVCEDSLETEK 380
Query: 1329 REPEV 1343
E +V
Sbjct: 381 MEQKV 385
>ref|NP_083037.1| poly(A)-specific ribonuclease PARN [Mus musculus].
Length = 624
Score = 55.8 bits (133), Expect = 7e-08
Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 19/155 (12%)
Frame = +3
Query: 300 VDVQNDNFKEMWPSLLLAIKTASFVAVDTELSGLGDRKSLLN-----QCIEERYKAVCHA 464
+++ NFK + AI+ A F A+D E SG+ + S+ EERY+ +
Sbjct: 1 MEIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISNGPSVTALTSGFDTPEERYQKLKKH 60
Query: 465 ARTRSILSLGLACFKHQPDKGDHSYLVQVFNLTLLCME--------EYVIEPKSVQFLVQ 620
+ + GL FK+ D D ++ + FN + ++V + S+ FL
Sbjct: 61 SMDFLLFQFGLCAFKY--DHTDSKHVTKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLAS 118
Query: 621 HGFNFNRQYAQGIPY------HKGNDKGDESQSQS 707
GF+FN+ + GIPY + ++ DE +SQ+
Sbjct: 119 QGFDFNKVFCSGIPYLNQEEERQLREQFDEKRSQA 153
>ref|NP_001030038.1| poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Mus musculus].
Length = 531
Score = 50.4 bits (119), Expect = 3e-06
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Frame = +3
Query: 300 VDVQNDNFKEMWPSLLLAIKTASFVAVDTELSGLGDRKSLLNQCI-----EERYKAVCHA 464
+DV D F++ P L + A FV +D E +GL S Q E Y +
Sbjct: 1 MDVGADEFEQSLPLLQELVAGADFVGLDIEFTGLRSNLSRPQQISLFDLPSEWYLKTRQS 60
Query: 465 ARTRSILSLGLACFKHQPDKGD----HSYLVQVFNLTLLCME-EYVIEPKSVQFLVQHGF 629
+ +I +GL+ F + + HS +F T ++ E+ + SVQFL Q+GF
Sbjct: 61 VQQFTICQIGLSMFSSIEGESNKYVAHSCNFFLFPTTFGILDSEFSFQASSVQFLNQYGF 120
Query: 630 NFNRQYAQGIPY 665
++N+ GIPY
Sbjct: 121 DYNKFLKNGIPY 132
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,403,352
Number of extensions: 1463121
Number of successful extensions: 7562
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7460
Number of HSP's successfully gapped: 3
Length of query: 448
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 343
Effective length of database: 12,463,779
Effective search space: 4275076197
Effective search space used: 4275076197
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003325
(1345 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128093.1| PREDICTED: target of EGR1 protein 1 isoform ... 725 0.0
Alignment gi|XP_003128094.1| PREDICTED: target of EGR1 protein 1 isoform ... 677 0.0
Alignment gi|XP_001926376.2| PREDICTED: poly(A)-specific ribonuclease PAR... 51 1e-06
>ref|XP_003128093.1| PREDICTED: target of EGR1 protein 1 isoform 1 [Sus scrofa].
Length = 510
Score = 725 bits (1871), Expect = 0.0
Identities = 353/364 (96%), Positives = 354/364 (97%)
Frame = +3
Query: 252 HQSTKSEEELAIQVPVVDVQNDNFKEMWPSLLLAIKTASFVAVDTELSGLGDRKSLLNQC 431
HQSTKS EELAIQVPVVDVQNDNFKEMWPSLLLAIKTASFVAVDTELSGLGDRKSLLNQC
Sbjct: 21 HQSTKSGEELAIQVPVVDVQNDNFKEMWPSLLLAIKTASFVAVDTELSGLGDRKSLLNQC 80
Query: 432 IEERYKAVCHAARTRSILSLGLACFKHQPDKGDHSYLVQVFNLTLLCMEEYVIEPKSVQF 611
IEERYKAVCHAARTRSILSLGLACFKHQPDKGDHSYLVQVFNLTLLCMEEYVIEPKSVQF
Sbjct: 81 IEERYKAVCHAARTRSILSLGLACFKHQPDKGDHSYLVQVFNLTLLCMEEYVIEPKSVQF 140
Query: 612 LVQHGFNFNRQYAQGIPYHKGNDKGDESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLY 791
LVQHGFNFNRQYAQGIPYHKGNDKGDESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLY
Sbjct: 141 LVQHGFNFNRQYAQGIPYHKGNDKGDESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLY 200
Query: 792 QHFYAHLPESLGTFTADLCEMFPAGIYDTKYAAEFHARFVASYLEYAFRKCERENGKQRA 971
QHFYAHLPESLGTFTADLCEMFPAGIYDTKYAAEFHARFVASYLEYAFRKCERENGKQRA
Sbjct: 201 QHFYAHLPESLGTFTADLCEMFPAGIYDTKYAAEFHARFVASYLEYAFRKCERENGKQRA 260
Query: 972 AGSPHLTLEFCSYPSSMRAHIDYRCCMPPATSRPHSTSICDNFSAYGWCPLGPRCPRSHD 1151
AGSPHLTLEFCSYPSSMRAHIDYRCCMPPAT RPHSTSICDNFSAYGWCPLGPRCPRSHD
Sbjct: 261 AGSPHLTLEFCSYPSSMRAHIDYRCCMPPATYRPHSTSICDNFSAYGWCPLGPRCPRSHD 320
Query: 1152 IDLIIDTDEAVVEDKXXXXXXTGKRLKALLSLPARQTPGETEGGPPAQQVRGEGLKPEER 1331
IDLIIDTDEAVVEDK GKRLKALLSLPARQTPGETEGGPPA+QVRGEGLKPEE
Sbjct: 321 IDLIIDTDEAVVEDKRRRRRRRGKRLKALLSLPARQTPGETEGGPPAKQVRGEGLKPEEG 380
Query: 1332 EPEV 1343
EPEV
Sbjct: 381 EPEV 384
>ref|XP_003128094.1| PREDICTED: target of EGR1 protein 1 isoform 2 [Sus scrofa].
Length = 464
Score = 677 bits (1747), Expect = 0.0
Identities = 328/338 (97%), Positives = 329/338 (97%)
Frame = +3
Query: 330 MWPSLLLAIKTASFVAVDTELSGLGDRKSLLNQCIEERYKAVCHAARTRSILSLGLACFK 509
MWPSLLLAIKTASFVAVDTELSGLGDRKSLLNQCIEERYKAVCHAARTRSILSLGLACFK
Sbjct: 1 MWPSLLLAIKTASFVAVDTELSGLGDRKSLLNQCIEERYKAVCHAARTRSILSLGLACFK 60
Query: 510 HQPDKGDHSYLVQVFNLTLLCMEEYVIEPKSVQFLVQHGFNFNRQYAQGIPYHKGNDKGD 689
HQPDKGDHSYLVQVFNLTLLCMEEYVIEPKSVQFLVQHGFNFNRQYAQGIPYHKGNDKGD
Sbjct: 61 HQPDKGDHSYLVQVFNLTLLCMEEYVIEPKSVQFLVQHGFNFNRQYAQGIPYHKGNDKGD 120
Query: 690 ESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLYQHFYAHLPESLGTFTADLCEMFPAGI 869
ESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLYQHFYAHLPESLGTFTADLCEMFPAGI
Sbjct: 121 ESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLYQHFYAHLPESLGTFTADLCEMFPAGI 180
Query: 870 YDTKYAAEFHARFVASYLEYAFRKCERENGKQRAAGSPHLTLEFCSYPSSMRAHIDYRCC 1049
YDTKYAAEFHARFVASYLEYAFRKCERENGKQRAAGSPHLTLEFCSYPSSMRAHIDYRCC
Sbjct: 181 YDTKYAAEFHARFVASYLEYAFRKCERENGKQRAAGSPHLTLEFCSYPSSMRAHIDYRCC 240
Query: 1050 MPPATSRPHSTSICDNFSAYGWCPLGPRCPRSHDIDLIIDTDEAVVEDKXXXXXXTGKRL 1229
MPPAT RPHSTSICDNFSAYGWCPLGPRCPRSHDIDLIIDTDEAVVEDK GKRL
Sbjct: 241 MPPATYRPHSTSICDNFSAYGWCPLGPRCPRSHDIDLIIDTDEAVVEDKRRRRRRRGKRL 300
Query: 1230 KALLSLPARQTPGETEGGPPAQQVRGEGLKPEEREPEV 1343
KALLSLPARQTPGETEGGPPA+QVRGEGLKPEE EPEV
Sbjct: 301 KALLSLPARQTPGETEGGPPAKQVRGEGLKPEEGEPEV 338
>ref|XP_001926376.2| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Sus scrofa].
Length = 531
Score = 51.2 bits (121), Expect = 1e-06
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 10/148 (6%)
Frame = +3
Query: 300 VDVQNDNFKEMWPSLLLAIKTASFVAVDTELSGL-----GDRKSLLNQCIEERYKAVCHA 464
+D+ D F++ P L + A FV +D E +GL G ++ L E Y +
Sbjct: 1 MDIGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQS 60
Query: 465 ARTRSILSLGLACFKHQPDKGD----HSYLVQVFNLTLLCME-EYVIEPKSVQFLVQHGF 629
+ +I +GL+ F + + HS +F T ++ E+ + SVQFL Q+GF
Sbjct: 61 VQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPTTFGILDSEFSFQASSVQFLNQYGF 120
Query: 630 NFNRQYAQGIPYHKGNDKGDESQSQSVR 713
++N+ GIPY +E Q + +R
Sbjct: 121 DYNKFLKNGIPYM------NEEQEKKIR 142
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,677,664
Number of extensions: 1161506
Number of successful extensions: 6329
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6285
Number of HSP's successfully gapped: 3
Length of query: 448
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 346
Effective length of database: 8,804,438
Effective search space: 3046335548
Effective search space used: 3046335548
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003325
(1345 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 519 e-144
>Sscrofa_Chr06
|| Length = 157765593
Score = 519 bits (262), Expect = e-144
Identities = 262/262 (100%)
Strand = Plus / Minus
Query: 682 agggcgatgagagccagagccagtcagtgaggaccctgttcctggagctgatccgggccc 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153409846 agggcgatgagagccagagccagtcagtgaggaccctgttcctggagctgatccgggccc 153409787
Query: 742 gccggcccctggtgttgcacaacggtcttatagacctggtgttcctgtaccagcacttct 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153409786 gccggcccctggtgttgcacaacggtcttatagacctggtgttcctgtaccagcacttct 153409727
Query: 802 atgcgcacctgcccgagagcttgggaaccttcactgctgacctgtgtgaaatgttcccag 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153409726 atgcgcacctgcccgagagcttgggaaccttcactgctgacctgtgtgaaatgttcccag 153409667
Query: 862 ctggcatttatgacaccaaatatgctgctgagtttcacgcccgctttgtggcctcctacc 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153409666 ctggcatttatgacaccaaatatgctgctgagtttcacgcccgctttgtggcctcctacc 153409607
Query: 922 tagaatatgccttccggaaatg 943
||||||||||||||||||||||
Sbjct: 153409606 tagaatatgccttccggaaatg 153409585
Score = 486 bits (245), Expect = e-134
Identities = 245/245 (100%)
Strand = Plus / Minus
Query: 1 taggctctcagcgcgcgccgggcccgctgctccgcgccagacccgggagctctgaacgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153411898 taggctctcagcgcgcgccgggcccgctgctccgcgccagacccgggagctctgaacgga 153411839
Query: 61 agtccgacctgtcggcgacccagggggcgaggtgaggcgccgccacctccccgacggcga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153411838 agtccgacctgtcggcgacccagggggcgaggtgaggcgccgccacctccccgacggcga 153411779
Query: 121 gagccgagccaggggacgaagcggaagtcccgcggacccactgactatactgaagagaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153411778 gagccgagccaggggacgaagcggaagtcccgcggacccactgactatactgaagagaga 153411719
Query: 181 ctcgcggtgtcatggccgccgacagtgacgatggcgcagcctcagctccagccgtttctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153411718 ctcgcggtgtcatggccgccgacagtgacgatggcgcagcctcagctccagccgtttctg 153411659
Query: 241 acggt 245
|||||
Sbjct: 153411658 acggt 153411654
Score = 450 bits (227), Expect = e-124
Identities = 239/243 (98%)
Strand = Plus / Minus
Query: 1103 ggcctacggctggtgccccctgggaccacgttgtcctcggtcccatgatattgaccttat 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153409138 ggcctacggctggtgccccctgggaccacgttgtcctcggtcccatgatattgaccttat 153409079
Query: 1163 tattgacactgacgaggctgtcgtggaagacaagaggcgtcgacgaagacgtacgggaaa 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 153409078 tattgacactgacgaggctgtcgtggaagacaagaggcgtcgacgaagacgtaggggaaa 153409019
Query: 1223 acggctgaaggctttgttgagcctgcctgcgagacagacccctggggaaacggagggtgg 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 153409018 acggctgaaggctttgttgagcctgcctgcgagacagacccctggggaaacggagggcgg 153408959
Query: 1283 tcctcccgcccagcaggtccgtggggaaggcctgaagcctgaggaacgtgagccggaggt 1342
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 153408958 tcctcccgccaagcaggtccgtggggaaggcctgaagcctgaggaaggtgagccggaggt 153408899
Query: 1343 ggc 1345
|||
Sbjct: 153408898 ggc 153408896
Score = 313 bits (158), Expect = 1e-82
Identities = 161/162 (99%)
Strand = Plus / Minus
Query: 943 gtgagcgggaaaatgggaagcagagggcagctggcagcccacaccttaccctggagttct 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153409379 gtgagcgggaaaatgggaagcagagggcagctggcagcccacaccttaccctggagttct 153409320
Query: 1003 gcagctatccttctagcatgagggcccacattgactatcgctgctgcatgccccctgcaa 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153409319 gcagctatccttctagcatgagggcccacattgactatcgctgctgcatgccccctgcaa 153409260
Query: 1063 cctcccgtccccattccaccagcatctgtgacaacttctcgg 1104
||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 153409259 cctaccgtccccattccaccagcatctgtgacaacttctcgg 153409218
Score = 313 bits (158), Expect = 1e-82
Identities = 161/162 (99%)
Strand = Plus / Minus
Query: 523 agggtgaccattcgtacctggtccaggtgttcaatctgaccctgctgtgcatggaggagt 582
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153410272 agggtgaccattcatacctggtccaggtgttcaatctgaccctgctgtgcatggaggagt 153410213
Query: 583 atgtcatagaaccaaagtccgtgcagttcctggtccagcatggtttcaacttcaaccggc 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153410212 atgtcatagaaccaaagtccgtgcagttcctggtccagcatggtttcaacttcaaccggc 153410153
Query: 643 agtatgcccagggcatcccctaccacaagggcaacgacaagg 684
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153410152 agtatgcccagggcatcccctaccacaagggcaacgacaagg 153410111
Score = 280 bits (141), Expect = 2e-72
Identities = 144/145 (99%)
Strand = Plus / Minus
Query: 243 ggtggtgtccaccaaagcacaaaatctgaggaggagctggcaatccaggttcccgtggtg 302
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 153410910 ggtggtgtccaccaaagcacaaaatctggggaggagctggcaatccaggttcccgtggtg 153410851
Query: 303 gatgtacaaaacgacaacttcaaggaaatgtggccgtccctcctgctggccataaagaca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153410850 gatgtacaaaacgacaacttcaaggaaatgtggccgtccctcctgctggccataaagaca 153410791
Query: 363 gctagctttgtggctgtggacacgg 387
|||||||||||||||||||||||||
Sbjct: 153410790 gctagctttgtggctgtggacacgg 153410766
Score = 194 bits (98), Expect = 9e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 428 gtgcatcgaggaacgttacaaggccgtgtgtcatgctgccaggacccgttccatcctctc 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153410493 gtgcatcgaggaacgttacaaggccgtgtgtcatgctgccaggacccgttccatcctctc 153410434
Query: 488 cctgggcctcgcttgctttaagcaccagccggacaagg 525
||||||||||||||||||||||||||||||||||||||
Sbjct: 153410433 cctgggcctcgcttgctttaagcaccagccggacaagg 153410396
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Minus
Query: 386 ggaactgagtgggcttggggaccggaagagtttgctgaaccagt 429
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153410680 ggaactgagtgggcttggggaccggaagagtttgctgaaccagt 153410637
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,374,301
Number of extensions: 147
Number of successful extensions: 147
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 8
Length of query: 1345
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1324
Effective length of database: 2,808,413,156
Effective search space: 3718339018544
Effective search space used: 3718339018544
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)