Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003328
(1017 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069921.1| folate transporter 1 [Bos taurus]. 377 e-105
Alignment gi|NP_001192939.1| thiamine transporter 1 [Bos taurus]. 188 7e-48
Alignment gi|XP_002694058.1| PREDICTED: feline leukemia virus subgroup A ... 188 7e-48
Alignment gi|NP_001095668.1| thiamine transporter 2 [Bos taurus]. 180 2e-45
>ref|NP_001069921.1| folate transporter 1 [Bos taurus].
Length = 508
Score = 377 bits (968), Expect = e-105
Identities = 199/286 (69%), Positives = 207/286 (72%), Gaps = 11/286 (3%)
Frame = +2
Query: 191 KQASAEPRPGGRLPSWWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQVTNEIT 370
KQ AEP+PG SWWCLVFFLCFYGF+AQMRPGESFITPYLLGPDKNFTQ QVTNEIT
Sbjct: 10 KQMPAEPQPGHEQQSWWCLVFFLCFYGFMAQMRPGESFITPYLLGPDKNFTQTQVTNEIT 69
Query: 371 PVLSYSYLAVLVPIFLLTDYLRYTPVLLLQGLSYVSVWLLLLFGSTVLHMQFMEFFFSIT 550
PVLSYSYLAVLVPIFLLTDYL Y PVLLLQGLSYVSVWLLLLFGSTVLHMQFMEFFFSIT
Sbjct: 70 PVLSYSYLAVLVPIFLLTDYLCYKPVLLLQGLSYVSVWLLLLFGSTVLHMQFMEFFFSIT 129
Query: 551 MAARIAYSSYIFALVPPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTMGRVPFSTLNYXX 730
MAARIAYSSYIF+LVPPARYQR+A YSRA+VLLGVFTSSVLGQLLVT+GRV FSTLNY
Sbjct: 130 MAARIAYSSYIFSLVPPARYQRMASYSRASVLLGVFTSSVLGQLLVTVGRVAFSTLNYIS 189
Query: 731 XXXXXXXXXXXXXXKRPQRSLFFNRSAP-----APCELD------PXXXXXXXXXXXXXX 877
KRP+RSLFFN P AP ELD
Sbjct: 190 LAFLTFSLVLALFLKRPKRSLFFNHGVPGPAGAAPSELDQMNPGQAKAAGAKPGWLPAAW 249
Query: 878 XXSVXXXXXXXXXXXXXXXXXXXWSLWWVFSSAGYYLIVYYVHILW 1015
S WSLWWVF+SAGYYLIVYYVHILW
Sbjct: 250 RDSTFVRMPGELGRAVRLPQLRLWSLWWVFNSAGYYLIVYYVHILW 295
>ref|NP_001192939.1| thiamine transporter 1 [Bos taurus].
Length = 496
Score = 188 bits (477), Expect = 7e-48
Identities = 92/194 (47%), Positives = 123/194 (63%)
Frame = +2
Query: 236 WWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQVTNEITPVLSYSYLAVLVPIF 415
W+ LC YGF A +RP E F+TPYLLGPDKN T+++V NEI PV +YSYL +L P+F
Sbjct: 29 WFLPTALLCAYGFFASLRPSEPFLTPYLLGPDKNLTEREVFNEIYPVWTYSYLVLLFPVF 88
Query: 416 LLTDYLRYTPVLLLQGLSYVSVWLLLLFGSTVLHMQFMEFFFSITMAARIAYSSYIFALV 595
L TDYLRY PV+LLQGLS + W +LL+ +L +QF+EFF+ I A IAY SYI+++V
Sbjct: 89 LATDYLRYKPVVLLQGLSLIVTWFMLLYAQGLLAIQFLEFFYGIATATEIAYYSYIYSVV 148
Query: 596 PPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTMGRVPFSTLNYXXXXXXXXXXXXXXXXK 775
+ YQ+V Y R+A L+G SVLGQ+LV++ +LN
Sbjct: 149 DLSMYQKVTSYCRSATLVGFTVGSVLGQILVSVASWSLFSLNVISLTCVSVAFAVAWFLP 208
Query: 776 RPQRSLFFNRSAPA 817
PQ+SLFF+ P+
Sbjct: 209 MPQKSLFFHHVPPS 222
>ref|XP_002694058.1| PREDICTED: feline leukemia virus subgroup A receptor-like [Bos
taurus].
Length = 496
Score = 188 bits (477), Expect = 7e-48
Identities = 92/194 (47%), Positives = 123/194 (63%)
Frame = +2
Query: 236 WWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQVTNEITPVLSYSYLAVLVPIF 415
W+ LC YGF A +RP E F+TPYLLGPDKN T+++V NEI PV +YSYL +L P+F
Sbjct: 29 WFLPTALLCAYGFFASLRPSEPFLTPYLLGPDKNLTEREVFNEIYPVWTYSYLVLLFPVF 88
Query: 416 LLTDYLRYTPVLLLQGLSYVSVWLLLLFGSTVLHMQFMEFFFSITMAARIAYSSYIFALV 595
L TDYLRY PV+LLQGLS + W +LL+ +L +QF+EFF+ I A IAY SYI+++V
Sbjct: 89 LATDYLRYKPVVLLQGLSLIVTWFMLLYAQGLLAIQFLEFFYGIATATEIAYYSYIYSVV 148
Query: 596 PPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTMGRVPFSTLNYXXXXXXXXXXXXXXXXK 775
+ YQ+V Y R+A L+G SVLGQ+LV++ +LN
Sbjct: 149 DLSMYQKVTSYCRSATLVGFTVGSVLGQILVSVASWSLFSLNVISLTCVSVAFAVAWFLP 208
Query: 776 RPQRSLFFNRSAPA 817
PQ+SLFF+ P+
Sbjct: 209 MPQKSLFFHHVPPS 222
>ref|NP_001095668.1| thiamine transporter 2 [Bos taurus].
Length = 485
Score = 180 bits (456), Expect = 2e-45
Identities = 85/190 (44%), Positives = 122/190 (64%)
Frame = +2
Query: 233 SWWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQVTNEITPVLSYSYLAVLVPI 412
SW LC +GF + MRP E F+ YL GPDKN T ++TNEI PV +YSYLA+L+P+
Sbjct: 11 SWIYPTVILCLFGFFSMMRPSEPFLMVYLSGPDKNLTSAELTNEIFPVWTYSYLALLLPV 70
Query: 413 FLLTDYLRYTPVLLLQGLSYVSVWLLLLFGSTVLHMQFMEFFFSITMAARIAYSSYIFAL 592
F+LTDY+RY PV++LQG+S++ WLLLLFG V MQ +EFF+ + A +AY +YI+++
Sbjct: 71 FVLTDYVRYKPVIILQGISFIICWLLLLFGQGVRTMQVLEFFYGMVTATEVAYYAYIYSV 130
Query: 593 VPPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTMGRVPFSTLNYXXXXXXXXXXXXXXXX 772
V P YQ+V+GY R+ L+ +SVL QLLV++ + + LN
Sbjct: 131 VSPEHYQKVSGYCRSVTLVAYTAASVLAQLLVSLAGLSYFYLNVISLASVSVAFLFSLFL 190
Query: 773 KRPQRSLFFN 802
P++S+FF+
Sbjct: 191 PMPKKSMFFH 200
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 27,049,091
Number of extensions: 688891
Number of successful extensions: 2923
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2905
Number of HSP's successfully gapped: 5
Length of query: 339
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,273,310
Effective search space: 3368501160
Effective search space used: 3368501160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003328
(1017 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548727.2| PREDICTED: similar to Folate transporter 1 (Sol... 259 3e-69
Alignment gi|XP_850843.1| PREDICTED: similar to Thiamine transporter 1 (T... 199 5e-51
Alignment gi|XP_543277.2| PREDICTED: similar to solute carrier family 19,... 185 5e-47
Alignment gi|XP_543276.2| PREDICTED: similar to solute carrier family 19,... 177 2e-44
Alignment gi|XP_547474.2| PREDICTED: similar to Thiamine transporter 1 (T... 57 2e-08
>ref|XP_548727.2| PREDICTED: similar to Folate transporter 1 (Solute carrier family 19,
member 1) (Placental folate transporter) (FOLT) (Reduced
folate carrier protein) (RFC) (Intestinal folate carrier)
(IFC-1) [Canis familiaris].
Length = 1097
Score = 259 bits (662), Expect = 3e-69
Identities = 140/228 (61%), Positives = 154/228 (67%), Gaps = 6/228 (2%)
Frame = +2
Query: 350 QVTNEITPVLSYSYLAVLVPIFLLTDYLRYTPVLLLQGLSYVSVWLLLLFGSTVLHMQFM 529
+VTNEITPVLSY YL VLVP+FLLTDYLRY PVL+LQGLSYV+VWLLLL G++V HMQ M
Sbjct: 660 RVTNEITPVLSYCYLLVLVPVFLLTDYLRYKPVLVLQGLSYVAVWLLLLLGTSVRHMQCM 719
Query: 530 EFFFSITMAARIAYSSYIFALVPPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTMGRVPF 709
E F+S+TMAARIAYSSY+F+LV PARYQR+AGYSRAAVLLGVFTSSVLGQLLVT+GRV F
Sbjct: 720 ELFYSVTMAARIAYSSYVFSLVRPARYQRMAGYSRAAVLLGVFTSSVLGQLLVTLGRVSF 779
Query: 710 STLNYXXXXXXXXXXXXXXXXKRPQRSLFFNRSAPA-----PCELDPXXXXXXXXXXXXX 874
STLNY KRP+RSLFFNR PA P ELD
Sbjct: 780 STLNYVSLGLLIFSLVLALFLKRPRRSLFFNRDGPARSGASPSELDRMNPDAPRGAARLG 839
Query: 875 XXXS-VXXXXXXXXXXXXXXXXXXXWSLWWVFSSAGYYLIVYYVHILW 1015
WSLWWVF+SA YYLIVYY HILW
Sbjct: 840 AWRDWTLVRMLRELGDSLRQPQLRLWSLWWVFNSAAYYLIVYYAHILW 887
>ref|XP_850843.1| PREDICTED: similar to Thiamine transporter 1 (THTR-1) (ThTr1)
(Thiamine carrier 1) (TC1) (Solute carrier family 19,
member 2) isoform 2 [Canis familiaris].
Length = 459
Score = 199 bits (505), Expect = 5e-51
Identities = 105/260 (40%), Positives = 139/260 (53%)
Frame = +2
Query: 236 WWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQVTNEITPVLSYSYLAVLVPIF 415
W+ LC YGF A +RP E F+TPYLLGPDKN T++QV NEI PV +YSYL +L P+F
Sbjct: 30 WFLPTALLCAYGFFASLRPSEPFLTPYLLGPDKNLTERQVFNEIYPVWTYSYLVLLFPVF 89
Query: 416 LLTDYLRYTPVLLLQGLSYVSVWLLLLFGSTVLHMQFMEFFFSITMAARIAYSSYIFALV 595
L TDYLRY PV+LLQGLS + W +LL+ +L +QF+EFF+ I A IAY SYI+++V
Sbjct: 90 LATDYLRYKPVVLLQGLSLIVTWFMLLYAQGLLAIQFLEFFYGIATATEIAYYSYIYSVV 149
Query: 596 PPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTMGRVPFSTLNYXXXXXXXXXXXXXXXXK 775
YQ+V Y R+A L+G SVLGQ+L ++ +LN
Sbjct: 150 DLNMYQKVTSYCRSATLVGFTVGSVLGQILFSVAGWSLFSLNVISLTCVSVAFAVAWFLP 209
Query: 776 RPQRSLFFNRSAPAPCELDPXXXXXXXXXXXXXXXXSVXXXXXXXXXXXXXXXXXXXWSL 955
PQ+SLFF+ P+ C+ V WS+
Sbjct: 210 MPQKSLFFHH-VPSTCQ------RMNGIKEPKPDRLLVLKILWSDFLMCYSSRPLLCWSV 262
Query: 956 WWVFSSAGYYLIVYYVHILW 1015
WW S+ GY+ +V Y LW
Sbjct: 263 WWALSTCGYFQVVNYTQGLW 282
>ref|XP_543277.2| PREDICTED: similar to solute carrier family 19, member 3 [Canis
familiaris].
Length = 608
Score = 185 bits (470), Expect = 5e-47
Identities = 86/190 (45%), Positives = 122/190 (64%)
Frame = +2
Query: 233 SWWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQVTNEITPVLSYSYLAVLVPI 412
SW LC +GF + MRP E F+ PYL GPDKN T ++TNEI PV +YSYL +L+P+
Sbjct: 124 SWIYPTVILCLFGFFSMMRPSEPFLIPYLSGPDKNLTSSEITNEILPVWTYSYLVLLLPV 183
Query: 413 FLLTDYLRYTPVLLLQGLSYVSVWLLLLFGSTVLHMQFMEFFFSITMAARIAYSSYIFAL 592
F+LTDY+RY PV++LQG+S++ WLLLLFG V MQ +EFF+ + A +AY +YI+++
Sbjct: 184 FILTDYVRYKPVIILQGISFIITWLLLLFGQGVKTMQVVEFFYGMVTATEVAYYAYIYSV 243
Query: 593 VPPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTMGRVPFSTLNYXXXXXXXXXXXXXXXX 772
V P YQ+V+GY R+ L+ +SVL QLLV++ V + LN
Sbjct: 244 VSPEHYQKVSGYCRSITLVAYTVASVLAQLLVSLANVSYFYLNVISLASVCVAFLFSLFL 303
Query: 773 KRPQRSLFFN 802
P++S+FF+
Sbjct: 304 PMPKKSMFFH 313
>ref|XP_543276.2| PREDICTED: similar to solute carrier family 19, member 3 [Canis
familiaris].
Length = 491
Score = 177 bits (448), Expect = 2e-44
Identities = 81/190 (42%), Positives = 121/190 (63%)
Frame = +2
Query: 233 SWWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQVTNEITPVLSYSYLAVLVPI 412
SW LC +GF + M+P E F+ PYL GPDKN + +TNEI P+ +YSYL +L+P+
Sbjct: 11 SWVFPTVNLCCFGFFSMMKPSEPFVIPYLAGPDKNISLSTITNEIFPIWTYSYLVLLLPV 70
Query: 413 FLLTDYLRYTPVLLLQGLSYVSVWLLLLFGSTVLHMQFMEFFFSITMAARIAYSSYIFAL 592
F+LTDY+RY PV++LQG+S++ WLLL+FG + MQ +EFF+ + A +AY +YI+++
Sbjct: 71 FILTDYVRYKPVIILQGISFIITWLLLVFGQGLRAMQVLEFFYGMVSATEVAYYAYIYSV 130
Query: 593 VPPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTMGRVPFSTLNYXXXXXXXXXXXXXXXX 772
V P YQ+V+GY R+ L+ +SVL QLLV++ V + LN
Sbjct: 131 VSPEHYQKVSGYCRSITLVAYTAASVLAQLLVSLANVSYFYLNVISLASVCVAFLFSLFL 190
Query: 773 KRPQRSLFFN 802
P++S+FF+
Sbjct: 191 PMPKKSMFFH 200
>ref|XP_547474.2| PREDICTED: similar to Thiamine transporter 1 (THTR-1) (ThTr1)
(Thiamine carrier 1) (TC1) (Solute carrier family 19,
member 2) isoform 1 [Canis familiaris].
Length = 296
Score = 57.4 bits (137), Expect = 2e-08
Identities = 23/39 (58%), Positives = 28/39 (71%)
Frame = +2
Query: 236 WWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQ 352
W+ LC YGF A +RP E F+TPYLLGPDKN T++Q
Sbjct: 30 WFLPTALLCAYGFFASLRPSEPFLTPYLLGPDKNLTERQ 68
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 27,958,668
Number of extensions: 668280
Number of successful extensions: 3122
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3113
Number of HSP's successfully gapped: 7
Length of query: 339
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 236
Effective length of database: 15,440,896
Effective search space: 3644051456
Effective search space used: 3644051456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003328
(1017 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192135.1| folate transporter 1 isoform 2 [Homo sapiens]. 352 4e-97
Alignment gi|NP_919231.1| folate transporter 1 isoform 1 [Homo sapiens]. 352 4e-97
Alignment gi|NP_001192136.1| folate transporter 1 isoform 3 [Homo sapiens]. 276 3e-74
Alignment gi|NP_008927.1| thiamine transporter 1 [Homo sapiens]. 187 1e-47
Alignment gi|NP_079519.1| thiamine transporter 2 [Homo sapiens]. 185 7e-47
>ref|NP_001192135.1| folate transporter 1 isoform 2 [Homo sapiens].
Length = 489
Score = 352 bits (902), Expect = 4e-97
Identities = 184/283 (65%), Positives = 201/283 (71%), Gaps = 8/283 (2%)
Frame = +2
Query: 191 KQASAEPRPGGRLPSWWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQVTNEIT 370
KQ EP P L SW LV +LCFYGF+AQ+RPGESFITPYLLGPDKNFT++QVTNEIT
Sbjct: 10 KQVPVEPGPDPELRSWRHLVCYLCFYGFMAQIRPGESFITPYLLGPDKNFTREQVTNEIT 69
Query: 371 PVLSYSYLAVLVPIFLLTDYLRYTPVLLLQGLSYVSVWLLLLFGSTVLHMQFMEFFFSIT 550
PVLSYSYLAVLVP+FLLTDYLRYTPVLLLQGLS+VSVWLLLL G +V HMQ ME F+S+T
Sbjct: 70 PVLSYSYLAVLVPVFLLTDYLRYTPVLLLQGLSFVSVWLLLLLGHSVAHMQLMELFYSVT 129
Query: 551 MAARIAYSSYIFALVPPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTMGRVPFSTLNYXX 730
MAARIAYSSYIF+LV PARYQRVAGYSRAAVLLGVFTSSVLGQLLVT+GRV FSTLNY
Sbjct: 130 MAARIAYSSYIFSLVRPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTVGRVSFSTLNYIS 189
Query: 731 XXXXXXXXXXXXXXKRPQRSLFFNRSAPAPCE--------LDPXXXXXXXXXXXXXXXXS 886
KRP+RSLFFNR CE ++P S
Sbjct: 190 LAFLTFSVVLALFLKRPKRSLFFNRDDRGRCETSASELERMNPGPGGKLGHALRVACGDS 249
Query: 887 VXXXXXXXXXXXXXXXXXXXWSLWWVFSSAGYYLIVYYVHILW 1015
V WSLWWVF+SAGYYL+VYYVHILW
Sbjct: 250 VLARMLRELGDSLRRPQLRLWSLWWVFNSAGYYLVVYYVHILW 292
>ref|NP_919231.1| folate transporter 1 isoform 1 [Homo sapiens].
Length = 591
Score = 352 bits (902), Expect = 4e-97
Identities = 184/283 (65%), Positives = 201/283 (71%), Gaps = 8/283 (2%)
Frame = +2
Query: 191 KQASAEPRPGGRLPSWWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQVTNEIT 370
KQ EP P L SW LV +LCFYGF+AQ+RPGESFITPYLLGPDKNFT++QVTNEIT
Sbjct: 10 KQVPVEPGPDPELRSWRHLVCYLCFYGFMAQIRPGESFITPYLLGPDKNFTREQVTNEIT 69
Query: 371 PVLSYSYLAVLVPIFLLTDYLRYTPVLLLQGLSYVSVWLLLLFGSTVLHMQFMEFFFSIT 550
PVLSYSYLAVLVP+FLLTDYLRYTPVLLLQGLS+VSVWLLLL G +V HMQ ME F+S+T
Sbjct: 70 PVLSYSYLAVLVPVFLLTDYLRYTPVLLLQGLSFVSVWLLLLLGHSVAHMQLMELFYSVT 129
Query: 551 MAARIAYSSYIFALVPPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTMGRVPFSTLNYXX 730
MAARIAYSSYIF+LV PARYQRVAGYSRAAVLLGVFTSSVLGQLLVT+GRV FSTLNY
Sbjct: 130 MAARIAYSSYIFSLVRPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTVGRVSFSTLNYIS 189
Query: 731 XXXXXXXXXXXXXXKRPQRSLFFNRSAPAPCE--------LDPXXXXXXXXXXXXXXXXS 886
KRP+RSLFFNR CE ++P S
Sbjct: 190 LAFLTFSVVLALFLKRPKRSLFFNRDDRGRCETSASELERMNPGPGGKLGHALRVACGDS 249
Query: 887 VXXXXXXXXXXXXXXXXXXXWSLWWVFSSAGYYLIVYYVHILW 1015
V WSLWWVF+SAGYYL+VYYVHILW
Sbjct: 250 VLARMLRELGDSLRRPQLRLWSLWWVFNSAGYYLVVYYVHILW 292
>ref|NP_001192136.1| folate transporter 1 isoform 3 [Homo sapiens].
Length = 551
Score = 276 bits (705), Expect = 3e-74
Identities = 151/252 (59%), Positives = 166/252 (65%), Gaps = 8/252 (3%)
Frame = +2
Query: 284 MRPGESFITPYLLGPDKNFTQKQVTNEITPVLSYSYLAVLVPIFLLTDYLRYTPVLLLQG 463
MRP + P G + +VTNEITPVLSYSYLAVLVP+FLLTDYLRYTPVLLLQG
Sbjct: 1 MRPQPAEPAPGGRGNEACSIHSEVTNEITPVLSYSYLAVLVPVFLLTDYLRYTPVLLLQG 60
Query: 464 LSYVSVWLLLLFGSTVLHMQFMEFFFSITMAARIAYSSYIFALVPPARYQRVAGYSRAAV 643
LS+VSVWLLLL G +V HMQ ME F+S+TMAARIAYSSYIF+LV PARYQRVAGYSRAAV
Sbjct: 61 LSFVSVWLLLLLGHSVAHMQLMELFYSVTMAARIAYSSYIFSLVRPARYQRVAGYSRAAV 120
Query: 644 LLGVFTSSVLGQLLVTMGRVPFSTLNYXXXXXXXXXXXXXXXXKRPQRSLFFNRSAPAPC 823
LLGVFTSSVLGQLLVT+GRV FSTLNY KRP+RSLFFNR C
Sbjct: 121 LLGVFTSSVLGQLLVTVGRVSFSTLNYISLAFLTFSVVLALFLKRPKRSLFFNRDDRGRC 180
Query: 824 E--------LDPXXXXXXXXXXXXXXXXSVXXXXXXXXXXXXXXXXXXXWSLWWVFSSAG 979
E ++P SV WSLWWVF+SAG
Sbjct: 181 ETSASELERMNPGPGGKLGHALRVACGDSVLARMLRELGDSLRRPQLRLWSLWWVFNSAG 240
Query: 980 YYLIVYYVHILW 1015
YYL+VYYVHILW
Sbjct: 241 YYLVVYYVHILW 252
>ref|NP_008927.1| thiamine transporter 1 [Homo sapiens].
Length = 497
Score = 187 bits (476), Expect = 1e-47
Identities = 94/201 (46%), Positives = 125/201 (62%)
Frame = +2
Query: 224 RLPSWWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQVTNEITPVLSYSYLAVL 403
R W+ LC YGF A +RP E F+TPYLLGPDKN T+++V NEI PV +YSYL +L
Sbjct: 26 RRECWFLPTALLCAYGFFASLRPSEPFLTPYLLGPDKNLTEREVFNEIYPVWTYSYLVLL 85
Query: 404 VPIFLLTDYLRYTPVLLLQGLSYVSVWLLLLFGSTVLHMQFMEFFFSITMAARIAYSSYI 583
P+FL TDYLRY PV+LLQGLS + W +LL+ +L +QF+EFF+ I A IAY SYI
Sbjct: 86 FPVFLATDYLRYKPVVLLQGLSLIVTWFMLLYAQGLLAIQFLEFFYGIATATEIAYYSYI 145
Query: 584 FALVPPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTMGRVPFSTLNYXXXXXXXXXXXXX 763
+++V YQ+V Y R+A L+G SVLGQ+LV++ +LN
Sbjct: 146 YSVVDLGMYQKVTSYCRSATLVGFTVGSVLGQILVSVAGWSLFSLNVISLTCVSVAFAVA 205
Query: 764 XXXKRPQRSLFFNRSAPAPCE 826
PQ+SLFF+ P+ C+
Sbjct: 206 WFLPMPQKSLFFHH-IPSTCQ 225
>ref|NP_079519.1| thiamine transporter 2 [Homo sapiens].
Length = 496
Score = 185 bits (469), Expect = 7e-47
Identities = 87/190 (45%), Positives = 121/190 (63%)
Frame = +2
Query: 233 SWWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQVTNEITPVLSYSYLAVLVPI 412
SW LC +GF + MRP E F+ PYL GPDKN T ++TNEI PV +YSYL +L+P+
Sbjct: 11 SWIYPTVILCLFGFFSMMRPSEPFLIPYLSGPDKNLTSAEITNEIFPVWTYSYLVLLLPV 70
Query: 413 FLLTDYLRYTPVLLLQGLSYVSVWLLLLFGSTVLHMQFMEFFFSITMAARIAYSSYIFAL 592
F+LTDY+RY PV++LQG+S++ WLLLLFG V MQ +EFF+ + AA +AY +YI+++
Sbjct: 71 FVLTDYVRYKPVIILQGISFIITWLLLLFGQGVKTMQVVEFFYGMVTAAEVAYYAYIYSV 130
Query: 593 VPPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTMGRVPFSTLNYXXXXXXXXXXXXXXXX 772
V P YQRV+GY R+ L SVL QLLV++ + + LN
Sbjct: 131 VSPEHYQRVSGYCRSVTLAAYTAGSVLAQLLVSLANMSYFYLNVISLASVSVAFLFSLFL 190
Query: 773 KRPQRSLFFN 802
P++S+FF+
Sbjct: 191 PMPKKSMFFH 200
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 27,258,784
Number of extensions: 645071
Number of successful extensions: 2862
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2844
Number of HSP's successfully gapped: 5
Length of query: 339
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,901,872
Effective search space: 3516841792
Effective search space used: 3516841792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003328
(1017 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001186200.1| folate transporter 1 [Mus musculus]. 302 2e-82
Alignment gi|NP_112473.1| folate transporter 1 [Mus musculus]. 302 2e-82
Alignment gi|NP_473428.1| thiamine transporter 1 [Mus musculus]. 186 3e-47
Alignment gi|NP_085033.2| thiamine transporter 2 [Mus musculus]. 169 4e-42
>ref|NP_001186200.1| folate transporter 1 [Mus musculus].
Length = 512
Score = 302 bits (774), Expect = 2e-82
Identities = 162/285 (56%), Positives = 190/285 (66%), Gaps = 10/285 (3%)
Frame = +2
Query: 191 KQASAEPRPGGRLPSWWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQVTNEIT 370
KQA EPR L SW CLVF+LCF+GF+AQ+RPGESFITP+LL ++ FT++QVTNEI
Sbjct: 10 KQAYEEPRQDHELKSWRCLVFYLCFFGFMAQLRPGESFITPFLL--ERKFTKEQVTNEII 67
Query: 371 PVLSYSYLAVLVPIFLLTDYLRYTPVLLLQGLSYVSVWLLLLFGSTVLHMQFMEFFFSIT 550
P+L YS+LAVLVP+FLLTDYLRY PVL+LQ LS+V VWLLLL G++V+HMQ ME F+S+T
Sbjct: 68 PMLPYSHLAVLVPVFLLTDYLRYKPVLVLQCLSFVCVWLLLLLGTSVVHMQLMEVFYSVT 127
Query: 551 MAARIAYSSYIFALVPPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTMGRVPFSTLNYXX 730
MAARIAYSSYIF+LV P+RYQR+A YSRAAVLLGVF SSVLGQ LVT+G + TLN
Sbjct: 128 MAARIAYSSYIFSLVHPSRYQRMASYSRAAVLLGVFISSVLGQALVTVGHISTYTLNCVS 187
Query: 731 XXXXXXXXXXXXXXKRPQRSLFFNRSAPA----PCELD------PXXXXXXXXXXXXXXX 880
KRP+RSLFFNRS A PCELD
Sbjct: 188 LGFILFSLVLSLFLKRPKRSLFFNRSTLARGALPCELDQMHPGPDRPETRKLDRMLGTCR 247
Query: 881 XSVXXXXXXXXXXXXXXXXXXXWSLWWVFSSAGYYLIVYYVHILW 1015
S W LWWVF+S+GYYLI YYVH+LW
Sbjct: 248 DSFLVRMLSELVENARQPQLRLWCLWWVFNSSGYYLITYYVHVLW 292
>ref|NP_112473.1| folate transporter 1 [Mus musculus].
Length = 512
Score = 302 bits (774), Expect = 2e-82
Identities = 162/285 (56%), Positives = 190/285 (66%), Gaps = 10/285 (3%)
Frame = +2
Query: 191 KQASAEPRPGGRLPSWWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQVTNEIT 370
KQA EPR L SW CLVF+LCF+GF+AQ+RPGESFITP+LL ++ FT++QVTNEI
Sbjct: 10 KQAYEEPRQDHELKSWRCLVFYLCFFGFMAQLRPGESFITPFLL--ERKFTKEQVTNEII 67
Query: 371 PVLSYSYLAVLVPIFLLTDYLRYTPVLLLQGLSYVSVWLLLLFGSTVLHMQFMEFFFSIT 550
P+L YS+LAVLVP+FLLTDYLRY PVL+LQ LS+V VWLLLL G++V+HMQ ME F+S+T
Sbjct: 68 PMLPYSHLAVLVPVFLLTDYLRYKPVLVLQCLSFVCVWLLLLLGTSVVHMQLMEVFYSVT 127
Query: 551 MAARIAYSSYIFALVPPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTMGRVPFSTLNYXX 730
MAARIAYSSYIF+LV P+RYQR+A YSRAAVLLGVF SSVLGQ LVT+G + TLN
Sbjct: 128 MAARIAYSSYIFSLVHPSRYQRMASYSRAAVLLGVFISSVLGQALVTVGHISTYTLNCVS 187
Query: 731 XXXXXXXXXXXXXXKRPQRSLFFNRSAPA----PCELD------PXXXXXXXXXXXXXXX 880
KRP+RSLFFNRS A PCELD
Sbjct: 188 LGFILFSLVLSLFLKRPKRSLFFNRSTLARGALPCELDQMHPGPDRPETRKLDRMLGTCR 247
Query: 881 XSVXXXXXXXXXXXXXXXXXXXWSLWWVFSSAGYYLIVYYVHILW 1015
S W LWWVF+S+GYYLI YYVH+LW
Sbjct: 248 DSFLVRMLSELVENARQPQLRLWCLWWVFNSSGYYLITYYVHVLW 292
>ref|NP_473428.1| thiamine transporter 1 [Mus musculus].
Length = 498
Score = 186 bits (472), Expect = 3e-47
Identities = 94/196 (47%), Positives = 122/196 (62%)
Frame = +2
Query: 236 WWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQVTNEITPVLSYSYLAVLVPIF 415
W+ LC YGF A +RP E F+TPYLLGPDKN T++QV NEI PV +YSYL +L P+F
Sbjct: 30 WFLPTALLCAYGFFANLRPSEPFLTPYLLGPDKNLTERQVYNEIYPVWTYSYLLLLFPVF 89
Query: 416 LLTDYLRYTPVLLLQGLSYVSVWLLLLFGSTVLHMQFMEFFFSITMAARIAYSSYIFALV 595
L TDYLRY PV+LLQGLS + W +LL+ +L +QF+EFF+ I A IAY SYI+ +V
Sbjct: 90 LATDYLRYKPVILLQGLSLIVTWFMLLYAQGLLAIQFLEFFYGIATATEIAYYSYIYTVV 149
Query: 596 PPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTMGRVPFSTLNYXXXXXXXXXXXXXXXXK 775
YQ+V Y R+A L+G SVLGQ+LV++ +LN
Sbjct: 150 DLGMYQKVTSYCRSATLVGFTVGSVLGQILVSVVGWSLFSLNVISLTCVSVAFAVAWFLP 209
Query: 776 RPQRSLFFNRSAPAPC 823
PQ+SLFF+ P+ C
Sbjct: 210 MPQKSLFFHH-IPSSC 224
>ref|NP_085033.2| thiamine transporter 2 [Mus musculus].
Length = 488
Score = 169 bits (427), Expect = 4e-42
Identities = 84/203 (41%), Positives = 121/203 (59%), Gaps = 5/203 (2%)
Frame = +2
Query: 233 SWWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQVTNEITPVLSYSYLAVLVPI 412
SW LC +GF + RP E+F+ P+L P KN T ++TNEI PV +YSYLA L P+
Sbjct: 12 SWVYPTVILCLFGFFSMFRPSEAFLIPFLSEPSKNLTSPEMTNEILPVWTYSYLATLPPV 71
Query: 413 FLLTDYLRYTPVLLLQGLSYVSVWLLLLFGSTVLHMQFMEFFFSITMAARIAYSSYIFAL 592
F+LTDYLRY PV++L +++ + +L LLFG V+ MQ EFFF + A IAY +YI+++
Sbjct: 72 FVLTDYLRYKPVIMLHVVAFATSYLFLLFGQGVMLMQTAEFFFGVVSATEIAYFAYIYSM 131
Query: 593 VPPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTMGRVPFSTLNYXXXXXXXXXXXXXXXX 772
V P YQ+V+ Y R+ L+ SVL QLLV++ +P+S+L Y
Sbjct: 132 VSPEHYQKVSSYCRSITLVAYTAGSVLAQLLVSLTNLPYSSLFYISLACVSVAFFFSLFL 191
Query: 773 KRPQRSLFFNRSA-----PAPCE 826
P++S+FF+ + P P E
Sbjct: 192 PMPKKSMFFHAKSDRDDCPKPLE 214
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 22,908,110
Number of extensions: 530760
Number of successful extensions: 2487
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2434
Number of HSP's successfully gapped: 6
Length of query: 339
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 237
Effective length of database: 12,553,887
Effective search space: 2975271219
Effective search space used: 2975271219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003328
(1017 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359060.1| PREDICTED: folate transporter 1 [Sus scrofa]. 449 e-127
Alignment gi|XP_003133743.1| PREDICTED: thiamine transporter 2-like [Sus ... 195 3e-50
Alignment gi|NP_001136139.1| feline leukemia virus subgroup A receptor [S... 185 4e-47
>ref|XP_003359060.1| PREDICTED: folate transporter 1 [Sus scrofa].
Length = 663
Score = 449 bits (1156), Expect = e-127
Identities = 232/295 (78%), Positives = 232/295 (78%)
Frame = +2
Query: 131 RSRSAARAXXXXXXXXXXXXKQASAEPRPGGRLPSWWCLVFFLCFYGFLAQMRPGESFIT 310
RSRSAARA KQASAEPRPGGRLPSWWCLVFFLCFYGFLAQMRPGESFIT
Sbjct: 155 RSRSAARAPGGMELPGPEGEKQASAEPRPGGRLPSWWCLVFFLCFYGFLAQMRPGESFIT 214
Query: 311 PYLLGPDKNFTQKQVTNEITPVLSYSYLAVLVPIFLLTDYLRYTPVLLLQGLSYVSVWLL 490
PYLLGPDKNFTQKQVTNEITPVLSYSYLAVLVPIFLLTDYLRYTPVLLLQGLSYVSVWLL
Sbjct: 215 PYLLGPDKNFTQKQVTNEITPVLSYSYLAVLVPIFLLTDYLRYTPVLLLQGLSYVSVWLL 274
Query: 491 LLFGSTVLHMQFMEFFFSITMAARIAYSSYIFALVPPARYQRVAGYSRAAVLLGVFTSSV 670
LLFGSTVLHMQFMEFFFSITMAARIAYSSYIFALVPPARYQRVAGYSRAAVLLGVFTSSV
Sbjct: 275 LLFGSTVLHMQFMEFFFSITMAARIAYSSYIFALVPPARYQRVAGYSRAAVLLGVFTSSV 334
Query: 671 LGQLLVTMGRVPFSTLNYXXXXXXXXXXXXXXXXKRPQRSLFFNRSAPAPCELDPXXXXX 850
LGQLLVTMGRVPFSTLNY KRPQRSLFFNRSAPAPCELDP
Sbjct: 335 LGQLLVTMGRVPFSTLNYVSLAFLLFSLVLTLFLKRPQRSLFFNRSAPAPCELDPMRPGG 394
Query: 851 XXXXXXXXXXXSVXXXXXXXXXXXXXXXXXXXWSLWWVFSSAGYYLIVYYVHILW 1015
SV WSLWWVFSSAGYYLIVYYVHILW
Sbjct: 395 CPPVARAARRDSVLARLLRELARALRLPQLRLWSLWWVFSSAGYYLIVYYVHILW 449
>ref|XP_003133743.1| PREDICTED: thiamine transporter 2-like [Sus scrofa].
Length = 485
Score = 195 bits (496), Expect = 3e-50
Identities = 109/288 (37%), Positives = 146/288 (50%), Gaps = 27/288 (9%)
Frame = +2
Query: 233 SWWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQVTNEITPVLSYSYLAVLVPI 412
SW LC +GF + MRP E F+ PYL GPDKN T +Q+TNEI PV +YSYLA+L P+
Sbjct: 11 SWIYPTVILCLFGFFSMMRPSEPFLMPYLSGPDKNLTTEQITNEIFPVWTYSYLALLFPV 70
Query: 413 FLLTDYLRYTPVLLLQGLSYVSVWLLLLFGSTVLHMQFMEFFFSITMAARIAYSSYIFAL 592
F+LTDY+RY PV+L QG+SY+ WLLLLFG V MQ +EF + + A +AY +YI+++
Sbjct: 71 FVLTDYVRYKPVVLFQGISYIITWLLLLFGQGVKVMQVLEFCYGMVTATEVAYYAYIYSV 130
Query: 593 VPPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTMGRVPFSTLNYXXXXXXXXXXXXXXXX 772
V P YQ+V+GY R+ L+ +SVL QLLV++ + + LN
Sbjct: 131 VSPEHYQKVSGYCRSVTLVAYTLASVLAQLLVSLASLSYFYLNVISLVSVSTAFLFSLFL 190
Query: 773 KRPQRSLFFN-----RSAPAPCELD-----------PXXXXXXXXXXXXXXXXS------ 886
P++SLFF+ + P P E D P S
Sbjct: 191 PMPKKSLFFHAKPSTEAPPKPSEKDAALGGPHKDHNPVCQEQVPVSETPYVVQSRDPKPG 250
Query: 887 -----VXXXXXXXXXXXXXXXXXXXWSLWWVFSSAGYYLIVYYVHILW 1015
V WSLWW S+AGY I+ YV +LW
Sbjct: 251 NVALRVFVQWLRDLKECYASKHLFYWSLWWALSTAGYNQILNYVQVLW 298
>ref|NP_001136139.1| feline leukemia virus subgroup A receptor [Sus scrofa].
Length = 496
Score = 185 bits (469), Expect = 4e-47
Identities = 90/189 (47%), Positives = 121/189 (64%)
Frame = +2
Query: 236 WWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQVTNEITPVLSYSYLAVLVPIF 415
W+ +C YGF A +RP E F+TPYLLGPDKN T+++V NEI PV +YSYL +L P+F
Sbjct: 30 WFLPTALICAYGFFASLRPSEPFLTPYLLGPDKNLTEREVFNEIYPVWTYSYLVLLFPVF 89
Query: 416 LLTDYLRYTPVLLLQGLSYVSVWLLLLFGSTVLHMQFMEFFFSITMAARIAYSSYIFALV 595
L TDYLRY PV+LLQGLS + W +LL+ +L +QF+EFF+ I A IAY SYI+++V
Sbjct: 90 LATDYLRYKPVVLLQGLSLIVTWFMLLYAQGLLAIQFLEFFYGIATATEIAYYSYIYSVV 149
Query: 596 PPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTMGRVPFSTLNYXXXXXXXXXXXXXXXXK 775
+ YQ+V Y R+A L+G SVLGQ+LV++ +LN
Sbjct: 150 DLSMYQKVTSYCRSATLVGFTVGSVLGQILVSVADWSLFSLNVISLTCVSVAFAVAWFLP 209
Query: 776 RPQRSLFFN 802
PQ+SLFF+
Sbjct: 210 MPQKSLFFH 218
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,860,862
Number of extensions: 497282
Number of successful extensions: 1928
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1914
Number of HSP's successfully gapped: 3
Length of query: 339
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 239
Effective length of database: 8,854,232
Effective search space: 2116161448
Effective search space used: 2116161448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003328
(1017 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 965 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 965 bits (487), Expect = 0.0
Identities = 487/487 (100%)
Strand = Plus / Minus
Query: 351 aggtcaccaacgagatcacgccggtgctgtcctactcctacctggccgtgctggtgccca 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218104891 aggtcaccaacgagatcacgccggtgctgtcctactcctacctggccgtgctggtgccca 218104832
Query: 411 tcttcctgctgaccgactacttgcgctacacgcccgtgctgctgctgcagggcctgagct 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218104831 tcttcctgctgaccgactacttgcgctacacgcccgtgctgctgctgcagggcctgagct 218104772
Query: 471 acgtgtcggtgtggctcctgctgctgttcggctccacggtgctgcacatgcagttcatgg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218104771 acgtgtcggtgtggctcctgctgctgttcggctccacggtgctgcacatgcagttcatgg 218104712
Query: 531 agttctttttcagcatcaccatggccgcgcgcatcgcctactcctcctacatcttcgcgc 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218104711 agttctttttcagcatcaccatggccgcgcgcatcgcctactcctcctacatcttcgcgc 218104652
Query: 591 tcgtgccgcccgcccgctaccagcgcgtggccggctactcgcgcgccgcggtgctgctgg 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218104651 tcgtgccgcccgcccgctaccagcgcgtggccggctactcgcgcgccgcggtgctgctgg 218104592
Query: 651 gtgtcttcaccagctccgtgctgggccagctgctggtcacgatgggcagggtgcccttct 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218104591 gtgtcttcaccagctccgtgctgggccagctgctggtcacgatgggcagggtgcccttct 218104532
Query: 711 ccacgctcaactacgtctcgctggccttcctgctcttcagcctggtcctcacgctcttcc 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218104531 ccacgctcaactacgtctcgctggccttcctgctcttcagcctggtcctcacgctcttcc 218104472
Query: 771 tgaagcgcccccagcgcagcctcttctttaaccgcagcgcgcccgccccctgcgagctgg 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218104471 tgaagcgcccccagcgcagcctcttctttaaccgcagcgcgcccgccccctgcgagctgg 218104412
Query: 831 accccat 837
|||||||
Sbjct: 218104411 accccat 218104405
Score = 446 bits (225), Expect = e-122
Identities = 225/225 (100%)
Strand = Plus / Minus
Query: 129 ccaggtcccgcagcgccgccagggccccgggtggcatggagctgcctggcccagaagggg 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218109080 ccaggtcccgcagcgccgccagggccccgggtggcatggagctgcctggcccagaagggg 218109021
Query: 189 agaagcaggcgtctgcggagccccggccgggtggcaggctgccgtcctggtggtgcctgg 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218109020 agaagcaggcgtctgcggagccccggccgggtggcaggctgccgtcctggtggtgcctgg 218108961
Query: 249 tcttcttcctctgcttctacggcttcctggcccagatgcggcccggggagagcttcatca 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218108960 tcttcttcctctgcttctacggcttcctggcccagatgcggcccggggagagcttcatca 218108901
Query: 309 cgccctacctcctaggccccgacaagaacttcacgcagaagcagg 353
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218108900 cgccctacctcctaggccccgacaagaacttcacgcagaagcagg 218108856
Score = 254 bits (128), Expect = 8e-65
Identities = 134/136 (98%)
Strand = Plus / Minus
Query: 882 actcggtgctggcgcgcctgctgcgggaactggcccgcgccctgcggctgccgcagctgc 941
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 218104360 actcggtgctggcgcgcctgctgcgggagctggcccgcgccctgcgactgccgcagctgc 218104301
Query: 942 gcctctggtcgctctggtgggtcttcagctcggccggctactacctgatcgtctactacg 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218104300 gcctctggtcgctctggtgggtcttcagctcggccggctactacctgatcgtctactacg 218104241
Query: 1002 tgcacatcctgtggaa 1017
||||||||||||||||
Sbjct: 218104240 tgcacatcctgtggaa 218104225
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 29 gggtttcagaagccatgggcgtccaggaagtagaaacgaagacagcagttttctttcccg 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218110416 gggtttcagaagccatgggcgtccaggaagtagaaacgaagacagcagttttctttcccg 218110357
Query: 89 gcgctggagtctgagacgtctgtccggggactcggggacaccag 132
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218110356 gcgctggagtctgagacgtctgtccggggactcggggacaccag 218110313
Score = 60.0 bits (30), Expect = 2e-06
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1 acagagctcgggaggccgcgagctggcagg 30
||||||||||||||||||||||||||||||
Sbjct: 218113607 acagagctcgggaggccgcgagctggcagg 218113578
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,405,578
Number of extensions: 123
Number of successful extensions: 123
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 5
Length of query: 1017
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 996
Effective length of database: 2,808,413,156
Effective search space: 2797179503376
Effective search space used: 2797179503376
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)