Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003343
(2329 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192402.1| set1/Ash2 histone methyltransferase complex ... 1140 0.0
Alignment gi|XP_002698780.1| PREDICTED: ash2-like [Bos taurus]. 1140 0.0
Alignment gi|XP_002690770.1| PREDICTED: ryanodine receptor 3 [Bos taurus]. 51 5e-06
Alignment gi|XP_590220.4| PREDICTED: ryanodine receptor 3 [Bos taurus]. 51 5e-06
>ref|NP_001192402.1| set1/Ash2 histone methyltransferase complex subunit ASH2 [Bos
taurus].
Length = 629
Score = 1140 bits (2950), Expect = 0.0
Identities = 553/596 (92%), Positives = 553/596 (92%), Gaps = 1/596 (0%)
Frame = +1
Query: 100 EEGETKXXXXXXXXXXGEGTSVTPA-AEPVSGEAESGDANSVDVSGGLETESSNGKDTLE 276
EEGETK GEGTS PA AEP SGEAESGDANSVDVSGGLETESSNGKDTLE
Sbjct: 28 EEGETKQAAAVAAAPAGEGTSAAPASAEPGSGEAESGDANSVDVSGGLETESSNGKDTLE 87
Query: 277 GAGDTSEVMDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFH 456
GAGDTSEVMDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFH
Sbjct: 88 GAGDTSEVMDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFH 147
Query: 457 CNVCHHSGNTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWE 636
CNVCHHSGNTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWE
Sbjct: 148 CNVCHHSGNTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWE 207
Query: 637 CMTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGP 816
CMTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGP
Sbjct: 208 CMTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGP 267
Query: 817 AYDNQKQSSTVSTSGNLNXXXXXXXXXXXXXXXXXXXXXXXXXXXKKARSDPLFSAQRLP 996
AYDNQKQSS VSTSGNLN KKARSDPLFSAQRLP
Sbjct: 268 AYDNQKQSSAVSTSGNLNGGIAAGSSGKGRGAKRKQQDGSTAGTTKKARSDPLFSAQRLP 327
Query: 997 PHGYPLEHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALH 1176
PHGYPLEHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALH
Sbjct: 328 PHGYPLEHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALH 387
Query: 1177 DRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGN 1356
DRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGN
Sbjct: 388 DRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGN 447
Query: 1357 LQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTY 1536
LQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTY
Sbjct: 448 LQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTY 507
Query: 1537 KDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAI 1716
KDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAI
Sbjct: 508 KDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAI 567
Query: 1717 SLYKSCTVSINFGPCFKYPPKDLAYRPMSDMGWGAVVEHTLADVLYHVETEVDGRR 1884
SLYKSCTVSINFGPCFKYPPKDL YRPMSDMGWGAVVEHTLADVLYHVETEVDGRR
Sbjct: 568 SLYKSCTVSINFGPCFKYPPKDLTYRPMSDMGWGAVVEHTLADVLYHVETEVDGRR 623
>ref|XP_002698780.1| PREDICTED: ash2-like [Bos taurus].
Length = 629
Score = 1140 bits (2950), Expect = 0.0
Identities = 553/596 (92%), Positives = 553/596 (92%), Gaps = 1/596 (0%)
Frame = +1
Query: 100 EEGETKXXXXXXXXXXGEGTSVTPA-AEPVSGEAESGDANSVDVSGGLETESSNGKDTLE 276
EEGETK GEGTS PA AEP SGEAESGDANSVDVSGGLETESSNGKDTLE
Sbjct: 28 EEGETKQAAAVAAAPAGEGTSAAPASAEPGSGEAESGDANSVDVSGGLETESSNGKDTLE 87
Query: 277 GAGDTSEVMDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFH 456
GAGDTSEVMDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFH
Sbjct: 88 GAGDTSEVMDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFH 147
Query: 457 CNVCHHSGNTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWE 636
CNVCHHSGNTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWE
Sbjct: 148 CNVCHHSGNTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWE 207
Query: 637 CMTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGP 816
CMTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGP
Sbjct: 208 CMTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGP 267
Query: 817 AYDNQKQSSTVSTSGNLNXXXXXXXXXXXXXXXXXXXXXXXXXXXKKARSDPLFSAQRLP 996
AYDNQKQSS VSTSGNLN KKARSDPLFSAQRLP
Sbjct: 268 AYDNQKQSSAVSTSGNLNGGIAAGSSGKGRGAKRKQQDGSTAGTTKKARSDPLFSAQRLP 327
Query: 997 PHGYPLEHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALH 1176
PHGYPLEHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALH
Sbjct: 328 PHGYPLEHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALH 387
Query: 1177 DRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGN 1356
DRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGN
Sbjct: 388 DRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGN 447
Query: 1357 LQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTY 1536
LQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTY
Sbjct: 448 LQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTY 507
Query: 1537 KDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAI 1716
KDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAI
Sbjct: 508 KDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAI 567
Query: 1717 SLYKSCTVSINFGPCFKYPPKDLAYRPMSDMGWGAVVEHTLADVLYHVETEVDGRR 1884
SLYKSCTVSINFGPCFKYPPKDL YRPMSDMGWGAVVEHTLADVLYHVETEVDGRR
Sbjct: 568 SLYKSCTVSINFGPCFKYPPKDLTYRPMSDMGWGAVVEHTLADVLYHVETEVDGRR 623
>ref|XP_002690770.1| PREDICTED: ryanodine receptor 3 [Bos taurus].
Length = 4859
Score = 50.8 bits (120), Expect = 5e-06
Identities = 31/102 (30%), Positives = 51/102 (50%)
Frame = +1
Query: 1195 KISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLG 1374
K+S D++ + V S+ VR G WYFE E+ R+GW++P LG
Sbjct: 1052 KVSIDKIR------FFRVERSYAVRSGKWYFEF---EVVTGGDMRVGWARPGCRPDIELG 1102
Query: 1375 YDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPE 1500
D ++ + +G ++HQ G ++ + GDV+G INL +
Sbjct: 1103 ADDQAFVFEGSRGQRWHQGSG-YFGRTWQPGDVVGCMINLDD 1143
>ref|XP_590220.4| PREDICTED: ryanodine receptor 3 [Bos taurus].
Length = 4447
Score = 50.8 bits (120), Expect = 5e-06
Identities = 31/102 (30%), Positives = 51/102 (50%)
Frame = +1
Query: 1195 KISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLG 1374
K+S D++ + V S+ VR G WYFE E+ R+GW++P LG
Sbjct: 640 KVSIDKIR------FFRVERSYAVRSGKWYFEF---EVVTGGDMRVGWARPGCRPDIELG 690
Query: 1375 YDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPE 1500
D ++ + +G ++HQ G ++ + GDV+G INL +
Sbjct: 691 ADDQAFVFEGSRGQRWHQGSG-YFGRTWQPGDVVGCMINLDD 731
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 92,196,711
Number of extensions: 2665327
Number of successful extensions: 9743
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9681
Number of HSP's successfully gapped: 4
Length of query: 776
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 666
Effective length of database: 14,041,694
Effective search space: 9351768204
Effective search space used: 9351768204
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003343
(2329 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848878.1| PREDICTED: similar to Set1/Ash2 histone methylt... 1139 0.0
Alignment gi|XP_857422.1| PREDICTED: similar to Set1/Ash2 histone methylt... 1044 0.0
Alignment gi|XP_532808.2| PREDICTED: similar to Set1/Ash2 histone methylt... 959 0.0
Alignment gi|XP_536330.2| PREDICTED: similar to Ryanodine receptor 2 (Car... 50 1e-05
>ref|XP_848878.1| PREDICTED: similar to Set1/Ash2 histone methyltransferase complex
subunit ASH2 (ASH2-like protein) isoform 2 [Canis
familiaris].
Length = 628
Score = 1139 bits (2945), Expect = 0.0
Identities = 549/595 (92%), Positives = 550/595 (92%)
Frame = +1
Query: 100 EEGETKXXXXXXXXXXGEGTSVTPAAEPVSGEAESGDANSVDVSGGLETESSNGKDTLEG 279
EEGE K GEG SV P AEP SGEAESGDANSVDV GGLETESSNGKDTLEG
Sbjct: 28 EEGEIKPVVAVATAPAGEGASVAPTAEPSSGEAESGDANSVDVGGGLETESSNGKDTLEG 87
Query: 280 AGDTSEVMDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHC 459
AGDTSEVMDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHC
Sbjct: 88 AGDTSEVMDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHC 147
Query: 460 NVCHHSGNTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWEC 639
NVCHHSGNTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWEC
Sbjct: 148 NVCHHSGNTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWEC 207
Query: 640 MTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPA 819
MTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPA
Sbjct: 208 MTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPA 267
Query: 820 YDNQKQSSTVSTSGNLNXXXXXXXXXXXXXXXXXXXXXXXXXXXKKARSDPLFSAQRLPP 999
YDNQKQSS VSTSGNLN KKARSDPLFSAQRLPP
Sbjct: 268 YDNQKQSSAVSTSGNLNGGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPP 327
Query: 1000 HGYPLEHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHD 1179
HGYPLEHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHD
Sbjct: 328 HGYPLEHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHD 387
Query: 1180 RAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNL 1359
RAPQLKISDDRLTVVGEKGYSMVRASHGVRKG+WYFEITVDEMPPDTAARLGWSQPLGNL
Sbjct: 388 RAPQLKISDDRLTVVGEKGYSMVRASHGVRKGSWYFEITVDEMPPDTAARLGWSQPLGNL 447
Query: 1360 QAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYK 1539
QAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYK
Sbjct: 448 QAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYK 507
Query: 1540 DKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAIS 1719
DKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAIS
Sbjct: 508 DKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAIS 567
Query: 1720 LYKSCTVSINFGPCFKYPPKDLAYRPMSDMGWGAVVEHTLADVLYHVETEVDGRR 1884
LYKSCTVSINFGPCFKYPPKDL YRPMSDMGWGAVVEHTLADVLYHVETEVDGRR
Sbjct: 568 LYKSCTVSINFGPCFKYPPKDLTYRPMSDMGWGAVVEHTLADVLYHVETEVDGRR 622
>ref|XP_857422.1| PREDICTED: similar to Set1/Ash2 histone methyltransferase complex
subunit ASH2 (ASH2-like protein) isoform 3 [Canis
familiaris].
Length = 534
Score = 1044 bits (2700), Expect = 0.0
Identities = 498/528 (94%), Positives = 499/528 (94%)
Frame = +1
Query: 301 MDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 480
MDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG
Sbjct: 1 MDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 60
Query: 481 NTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRP 660
NTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRP
Sbjct: 61 NTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRP 120
Query: 661 GKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQS 840
GKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQS
Sbjct: 121 GKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQS 180
Query: 841 STVSTSGNLNXXXXXXXXXXXXXXXXXXXXXXXXXXXKKARSDPLFSAQRLPPHGYPLEH 1020
S VSTSGNLN KKARSDPLFSAQRLPPHGYPLEH
Sbjct: 181 SAVSTSGNLNGGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPPHGYPLEH 240
Query: 1021 PFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKI 1200
PFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKI
Sbjct: 241 PFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKI 300
Query: 1201 SDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYD 1380
SDDRLTVVGEKGYSMVRASHGVRKG+WYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYD
Sbjct: 301 SDDRLTVVGEKGYSMVRASHGVRKGSWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYD 360
Query: 1381 KFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKF 1560
KFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKF
Sbjct: 361 KFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKF 420
Query: 1561 KSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTV 1740
KSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTV
Sbjct: 421 KSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTV 480
Query: 1741 SINFGPCFKYPPKDLAYRPMSDMGWGAVVEHTLADVLYHVETEVDGRR 1884
SINFGPCFKYPPKDL YRPMSDMGWGAVVEHTLADVLYHVETEVDGRR
Sbjct: 481 SINFGPCFKYPPKDLTYRPMSDMGWGAVVEHTLADVLYHVETEVDGRR 528
>ref|XP_532808.2| PREDICTED: similar to Set1/Ash2 histone methyltransferase complex
subunit ASH2 (ASH2-like protein) isoform 1 [Canis
familiaris].
Length = 501
Score = 959 bits (2480), Expect = 0.0
Identities = 465/528 (88%), Positives = 466/528 (88%)
Frame = +1
Query: 301 MDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 480
MDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG
Sbjct: 1 MDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 60
Query: 481 NTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRP 660
NTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRP
Sbjct: 61 NTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRP 120
Query: 661 GKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQS 840
GKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQS
Sbjct: 121 GKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQS 180
Query: 841 STVSTSGNLNXXXXXXXXXXXXXXXXXXXXXXXXXXXKKARSDPLFSAQRLPPHGYPLEH 1020
S VSTSGNLN KKARSDPLFSAQRLPPHGYPLEH
Sbjct: 181 SAVSTSGNLNGGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPPHGYPLEH 240
Query: 1021 PFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKI 1200
PFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKI
Sbjct: 241 PFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKI 300
Query: 1201 SDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYD 1380
SDDRLTVVGEKGYSMVRASHGVRKG+WYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYD
Sbjct: 301 SDDRLTVVGEKGYSMVRASHGVRKGSWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYD 360
Query: 1381 KFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKF 1560
KFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKF
Sbjct: 361 KFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKF 420
Query: 1561 KSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTV 1740
KSYLYFEEKDFVDKAEKSLKQTPHSE V
Sbjct: 421 KSYLYFEEKDFVDKAEKSLKQTPHSE---------------------------------V 447
Query: 1741 SINFGPCFKYPPKDLAYRPMSDMGWGAVVEHTLADVLYHVETEVDGRR 1884
SINFGPCFKYPPKDL YRPMSDMGWGAVVEHTLADVLYHVETEVDGRR
Sbjct: 448 SINFGPCFKYPPKDLTYRPMSDMGWGAVVEHTLADVLYHVETEVDGRR 495
>ref|XP_536330.2| PREDICTED: similar to Ryanodine receptor 2 (Cardiac muscle-type
ryanodine receptor) (RyR2) (RYR-2) (Cardiac muscle
ryanodine receptor-calcium release channel) (hRYR-2)
[Canis familiaris].
Length = 4972
Score = 50.1 bits (118), Expect = 1e-05
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = +1
Query: 1255 SHGVRKGAWYFE---ITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFH 1425
++ V+ G WYFE +T +M R+GWS+P LG D+ ++++ K ++H
Sbjct: 1087 TYAVKAGRWYFEFEAVTAGDM------RVGWSRPGCQPDQELGSDEHAFAFDGFKAQRWH 1140
Query: 1426 QSIGKHYSSGYGQGDVLGFYINLPEDT 1506
Q +HY + GDV+G +++ E T
Sbjct: 1141 QG-NEHYGRSWQAGDVVGCMVDMTERT 1166
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 96,302,374
Number of extensions: 2752422
Number of successful extensions: 9959
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9918
Number of HSP's successfully gapped: 4
Length of query: 776
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 665
Effective length of database: 15,174,208
Effective search space: 10090848320
Effective search space used: 10090848320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003343
(2329 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004665.2| set1/Ash2 histone methyltransferase complex sub... 1132 0.0
Alignment gi|NP_001098684.1| set1/Ash2 histone methyltransferase complex ... 1045 0.0
Alignment gi|NP_001027.3| ryanodine receptor 3 [Homo sapiens]. 51 4e-06
>ref|NP_004665.2| set1/Ash2 histone methyltransferase complex subunit ASH2 isoform a
[Homo sapiens].
Length = 628
Score = 1132 bits (2929), Expect = 0.0
Identities = 546/595 (91%), Positives = 547/595 (91%)
Frame = +1
Query: 100 EEGETKXXXXXXXXXXGEGTSVTPAAEPVSGEAESGDANSVDVSGGLETESSNGKDTLEG 279
EEGE K GEG S P EP SGEAE G+AN VDVSGGLETESSNGKDTLEG
Sbjct: 28 EEGEMKPVAAGAAAPPGEGISAAPTVEPSSGEAEGGEANLVDVSGGLETESSNGKDTLEG 87
Query: 280 AGDTSEVMDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHC 459
AGDTSEVMDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHC
Sbjct: 88 AGDTSEVMDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHC 147
Query: 460 NVCHHSGNTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWEC 639
NVCHHSGNTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWEC
Sbjct: 148 NVCHHSGNTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWEC 207
Query: 640 MTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPA 819
MTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPA
Sbjct: 208 MTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPA 267
Query: 820 YDNQKQSSTVSTSGNLNXXXXXXXXXXXXXXXXXXXXXXXXXXXKKARSDPLFSAQRLPP 999
YDNQKQSS VSTSGNLN KKARSDPLFSAQRLPP
Sbjct: 268 YDNQKQSSAVSTSGNLNGGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPP 327
Query: 1000 HGYPLEHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHD 1179
HGYPLEHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHD
Sbjct: 328 HGYPLEHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHD 387
Query: 1180 RAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNL 1359
RAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNL
Sbjct: 388 RAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNL 447
Query: 1360 QAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYK 1539
QAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYK
Sbjct: 448 QAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYK 507
Query: 1540 DKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAIS 1719
DKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAIS
Sbjct: 508 DKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAIS 567
Query: 1720 LYKSCTVSINFGPCFKYPPKDLAYRPMSDMGWGAVVEHTLADVLYHVETEVDGRR 1884
LYKSCTVSINFGPCFKYPPKDL YRPMSDMGWGAVVEHTLADVLYHVETEVDGRR
Sbjct: 568 LYKSCTVSINFGPCFKYPPKDLTYRPMSDMGWGAVVEHTLADVLYHVETEVDGRR 622
>ref|NP_001098684.1| set1/Ash2 histone methyltransferase complex subunit ASH2 isoform b
[Homo sapiens].
Length = 534
Score = 1045 bits (2703), Expect = 0.0
Identities = 499/528 (94%), Positives = 499/528 (94%)
Frame = +1
Query: 301 MDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 480
MDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG
Sbjct: 1 MDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 60
Query: 481 NTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRP 660
NTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRP
Sbjct: 61 NTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRP 120
Query: 661 GKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQS 840
GKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQS
Sbjct: 121 GKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQS 180
Query: 841 STVSTSGNLNXXXXXXXXXXXXXXXXXXXXXXXXXXXKKARSDPLFSAQRLPPHGYPLEH 1020
S VSTSGNLN KKARSDPLFSAQRLPPHGYPLEH
Sbjct: 181 SAVSTSGNLNGGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPPHGYPLEH 240
Query: 1021 PFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKI 1200
PFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKI
Sbjct: 241 PFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKI 300
Query: 1201 SDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYD 1380
SDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYD
Sbjct: 301 SDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYD 360
Query: 1381 KFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKF 1560
KFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKF
Sbjct: 361 KFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKF 420
Query: 1561 KSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTV 1740
KSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTV
Sbjct: 421 KSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTV 480
Query: 1741 SINFGPCFKYPPKDLAYRPMSDMGWGAVVEHTLADVLYHVETEVDGRR 1884
SINFGPCFKYPPKDL YRPMSDMGWGAVVEHTLADVLYHVETEVDGRR
Sbjct: 481 SINFGPCFKYPPKDLTYRPMSDMGWGAVVEHTLADVLYHVETEVDGRR 528
>ref|NP_001027.3| ryanodine receptor 3 [Homo sapiens].
Length = 4870
Score = 51.2 bits (121), Expect = 4e-06
Identities = 31/102 (30%), Positives = 51/102 (50%)
Frame = +1
Query: 1195 KISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLG 1374
K+S D++ + V S+ VR G WYFE E+ R+GW++P LG
Sbjct: 1065 KVSIDKIR------FFRVERSYAVRSGKWYFEF---EVVTGGDMRVGWARPGCRPDVELG 1115
Query: 1375 YDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPE 1500
D ++ + +G ++HQ G ++ + GDV+G INL +
Sbjct: 1116 ADDQAFVFEGNRGQRWHQGSG-YFGRTWQPGDVVGCMINLDD 1156
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 94,481,255
Number of extensions: 2711550
Number of successful extensions: 9927
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9856
Number of HSP's successfully gapped: 3
Length of query: 776
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 666
Effective length of database: 14,671,124
Effective search space: 9770968584
Effective search space used: 9770968584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003343
(2329 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035921.2| set1/Ash2 histone methyltransferase complex sub... 1114 0.0
Alignment gi|NP_001074262.1| set1/Ash2 histone methyltransferase complex ... 1036 0.0
>ref|NP_035921.2| set1/Ash2 histone methyltransferase complex subunit ASH2 isoform a
[Mus musculus].
Length = 623
Score = 1114 bits (2881), Expect = 0.0
Identities = 538/579 (92%), Positives = 539/579 (93%)
Frame = +1
Query: 148 GEGTSVTPAAEPVSGEAESGDANSVDVSGGLETESSNGKDTLEGAGDTSEVMDTQAGSVD 327
GEG S P AEP SGEAESGDAN VDVSG LETESSNGKDTLEG GDTSEVMDTQAGSVD
Sbjct: 40 GEGPSAAPGAEPSSGEAESGDANLVDVSG-LETESSNGKDTLEGTGDTSEVMDTQAGSVD 98
Query: 328 EENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTYFLRKQA 507
EENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTYFLRKQA
Sbjct: 99 EENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTYFLRKQA 158
Query: 508 NLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMTWPNNI 687
NLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMTWPNNI
Sbjct: 159 NLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMTWPNNI 218
Query: 688 VKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQSSTVSTSGNL 867
VKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQSS VS SGNL
Sbjct: 219 VKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQSSAVSASGNL 278
Query: 868 NXXXXXXXXXXXXXXXXXXXXXXXXXXXKKARSDPLFSAQRLPPHGYPLEHPFNKDGYRY 1047
N KKARSDPLFSAQRLPPHGYPLEHPFNKDGYRY
Sbjct: 279 NGGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPPHGYPLEHPFNKDGYRY 338
Query: 1048 ILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKISDDRLTVVG 1227
ILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKISDDRLTVVG
Sbjct: 339 ILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKISDDRLTVVG 398
Query: 1228 EKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSK 1407
EKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSK
Sbjct: 399 EKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSK 458
Query: 1408 KGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKFKSYLYFEEK 1587
KGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKFKSYLYFEEK
Sbjct: 459 KGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKFKSYLYFEEK 518
Query: 1588 DFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTVSINFGPCFK 1767
DFVDKAEKSLKQTPHSEIIFYKNGVNQGVAY+DIFEGVYFPAISLYKSCTVSINFGP FK
Sbjct: 519 DFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYRDIFEGVYFPAISLYKSCTVSINFGPSFK 578
Query: 1768 YPPKDLAYRPMSDMGWGAVVEHTLADVLYHVETEVDGRR 1884
YPPKDL Y PMSDMGWGAVVEHTLADVLYHVETEVDGRR
Sbjct: 579 YPPKDLTYHPMSDMGWGAVVEHTLADVLYHVETEVDGRR 617
>ref|NP_001074262.1| set1/Ash2 histone methyltransferase complex subunit ASH2 isoform b
[Mus musculus].
Length = 534
Score = 1036 bits (2680), Expect = 0.0
Identities = 495/528 (93%), Positives = 496/528 (93%)
Frame = +1
Query: 301 MDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 480
MDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG
Sbjct: 1 MDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 60
Query: 481 NTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRP 660
NTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRP
Sbjct: 61 NTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRP 120
Query: 661 GKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQS 840
GKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQS
Sbjct: 121 GKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQS 180
Query: 841 STVSTSGNLNXXXXXXXXXXXXXXXXXXXXXXXXXXXKKARSDPLFSAQRLPPHGYPLEH 1020
S VS SGNLN KKARSDPLFSAQRLPPHGYPLEH
Sbjct: 181 SAVSASGNLNGGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPPHGYPLEH 240
Query: 1021 PFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKI 1200
PFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKI
Sbjct: 241 PFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKI 300
Query: 1201 SDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYD 1380
SDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYD
Sbjct: 301 SDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYD 360
Query: 1381 KFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKF 1560
KFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKF
Sbjct: 361 KFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKF 420
Query: 1561 KSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTV 1740
KSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAY+DIFEGVYFPAISLYKSCTV
Sbjct: 421 KSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYRDIFEGVYFPAISLYKSCTV 480
Query: 1741 SINFGPCFKYPPKDLAYRPMSDMGWGAVVEHTLADVLYHVETEVDGRR 1884
SINFGP FKYPPKDL Y PMSDMGWGAVVEHTLADVLYHVETEVDGRR
Sbjct: 481 SINFGPSFKYPPKDLTYHPMSDMGWGAVVEHTLADVLYHVETEVDGRR 528
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 80,250,355
Number of extensions: 2290939
Number of successful extensions: 8402
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8358
Number of HSP's successfully gapped: 2
Length of query: 776
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 667
Effective length of database: 12,343,635
Effective search space: 8233204545
Effective search space used: 8233204545
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003343
(2329 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230497.1| set1/Ash2 histone methyltransferase complex ... 1155 0.0
Alignment gi|XP_001924803.3| PREDICTED: LOW QUALITY PROTEIN: ryanodine re... 50 7e-06
>ref|NP_001230497.1| set1/Ash2 histone methyltransferase complex subunit ASH2 [Sus
scrofa].
Length = 628
Score = 1155 bits (2987), Expect = 0.0
Identities = 558/595 (93%), Positives = 558/595 (93%)
Frame = +1
Query: 100 EEGETKXXXXXXXXXXGEGTSVTPAAEPVSGEAESGDANSVDVSGGLETESSNGKDTLEG 279
EEGETK GEGTSVTPAAEPVSGEAESGDANSVDVSGGLETESSNGKDTLEG
Sbjct: 28 EEGETKPVAAVAAAPAGEGTSVTPAAEPVSGEAESGDANSVDVSGGLETESSNGKDTLEG 87
Query: 280 AGDTSEVMDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHC 459
AGDTSEVMDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHC
Sbjct: 88 AGDTSEVMDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHC 147
Query: 460 NVCHHSGNTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWEC 639
NVCHHSGNTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWEC
Sbjct: 148 NVCHHSGNTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWEC 207
Query: 640 MTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPA 819
MTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPA
Sbjct: 208 MTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPA 267
Query: 820 YDNQKQSSTVSTSGNLNXXXXXXXXXXXXXXXXXXXXXXXXXXXKKARSDPLFSAQRLPP 999
YDNQKQSSTVSTSGNLN KKARSDPLFSAQRLPP
Sbjct: 268 YDNQKQSSTVSTSGNLNGGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPP 327
Query: 1000 HGYPLEHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHD 1179
HGYPLEHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHD
Sbjct: 328 HGYPLEHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHD 387
Query: 1180 RAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNL 1359
RAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNL
Sbjct: 388 RAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNL 447
Query: 1360 QAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYK 1539
QAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYK
Sbjct: 448 QAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYK 507
Query: 1540 DKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAIS 1719
DKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAIS
Sbjct: 508 DKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAIS 567
Query: 1720 LYKSCTVSINFGPCFKYPPKDLAYRPMSDMGWGAVVEHTLADVLYHVETEVDGRR 1884
LYKSCTVSINFGPCFKYPPKDLAYRPMSDMGWGAVVEHTLADVLYHVETEVDGRR
Sbjct: 568 LYKSCTVSINFGPCFKYPPKDLAYRPMSDMGWGAVVEHTLADVLYHVETEVDGRR 622
>ref|XP_001924803.3| PREDICTED: LOW QUALITY PROTEIN: ryanodine receptor 2 [Sus scrofa].
Length = 4855
Score = 49.7 bits (117), Expect = 7e-06
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = +1
Query: 1255 SHGVRKGAWYFE---ITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFH 1425
++ V+ G WYFE +T +M R+GWS+P LG D+ ++++ K ++H
Sbjct: 992 TYAVKAGRWYFEFEAVTAGDM------RVGWSRPGCQPDQELGSDERAFAFDGFKAQRWH 1045
Query: 1426 QSIGKHYSSGYGQGDVLGFYINLPEDT 1506
Q +HY + GDV+G +++ E T
Sbjct: 1046 QG-NEHYGRSWQAGDVVGCMVDMTEHT 1071
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 59,463,354
Number of extensions: 1717515
Number of successful extensions: 6015
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5993
Number of HSP's successfully gapped: 2
Length of query: 776
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 669
Effective length of database: 8,679,953
Effective search space: 5806888557
Effective search space used: 5806888557
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003343
(2329 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 436 e-119
>Sscrofa_Chr15
|| Length = 157681621
Score = 436 bits (220), Expect = e-119
Identities = 220/220 (100%)
Strand = Plus / Minus
Query: 964 agtgaccccttgttttctgctcagcgccttccccctcatggctacccattggaacaccca 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55537283 agtgaccccttgttttctgctcagcgccttccccctcatggctacccattggaacaccca 55537224
Query: 1024 tttaacaaagacggctatcggtatattctagcggagcccgatccccatgccccagaccct 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55537223 tttaacaaagacggctatcggtatattctagcggagcccgatccccatgccccagaccct 55537164
Query: 1084 gagaagctcgaacttgactgctgggcaggaaaaccaattcctggagacctctacagagct 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55537163 gagaagctcgaacttgactgctgggcaggaaaaccaattcctggagacctctacagagct 55537104
Query: 1144 tgcttgtatgaacgggttttgttagccctacatgatcgag 1183
||||||||||||||||||||||||||||||||||||||||
Sbjct: 55537103 tgcttgtatgaacgggttttgttagccctacatgatcgag 55537064
Score = 402 bits (203), Expect = e-109
Identities = 247/257 (96%), Gaps = 4/257 (1%)
Strand = Plus / Minus
Query: 2074 acactcccttcagtgacggtcctcactctgcgccacagcccagcggctgctggcctgcaa 2133
||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||| |||||
Sbjct: 55511963 acactnccttcagtgacggncctcactttgcgc-acagcccagcggctgctggc-tgcaa 55511906
Query: 2134 tcccttcagtgccctgcacactggggctgtaccacctactccgccagctgggacttgtta 2193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55511905 tcccttcagtgccctgcacactggggctgtaccacctactccgccagctgggacttgtta 55511846
Query: 2194 tcttatggcgttgtctaagaaatgggtgatcttgtccaagcagctaacttatttaaaggc 2253
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 55511845 tcttatggcgt-gtctaagaaatgggtgatctgttccaagcagctaacttatttaaaggc 55511787
Query: 2254 atttccttctatgagcatcacctccatcccaccagattcccaaggaggtggtggggctgt 2313
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 55511786 atttccttctatgagcatcacctccatcccaccagattcccaaggaggtggtgggcctgt 55511727
Query: 2314 ttccca-aacagctgaa 2329
|||||| ||||||||||
Sbjct: 55511726 ttcccagaacagctgaa 55511710
Score = 391 bits (197), Expect = e-105
Identities = 197/197 (100%)
Strand = Plus / Minus
Query: 1350 aggtaaccttcaagctcccttaggttatgataaatttagctattcttggcggagcaaaaa 1409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55517183 aggtaaccttcaagctcccttaggttatgataaatttagctattcttggcggagcaaaaa 55517124
Query: 1410 aggaaccaagttccaccagtccattggcaaacactactcttctggctatggacagggaga 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55517123 aggaaccaagttccaccagtccattggcaaacactactcttctggctatggacagggaga 55517064
Query: 1470 cgtcctagggttttatatcaatcttcccgaagacacggagacagccaagtcactacccga 1529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55517063 cgtcctagggttttatatcaatcttcccgaagacacggagacagccaagtcactacccga 55517004
Query: 1530 tacctataaagataagg 1546
|||||||||||||||||
Sbjct: 55517003 tacctataaagataagg 55516987
Score = 345 bits (174), Expect = 7e-92
Identities = 174/174 (100%)
Strand = Plus / Minus
Query: 1182 agctccccagttaaagatctctgatgaccggctgactgtggttggagagaagggctattc 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55517634 agctccccagttaaagatctctgatgaccggctgactgtggttggagagaagggctattc 55517575
Query: 1242 catggttcgggcttctcatggggttcggaagggtgcctggtactttgaaatcacggtgga 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55517574 catggttcgggcttctcatggggttcggaagggtgcctggtactttgaaatcacggtgga 55517515
Query: 1302 tgagatgccgccagacactgctgccagactgggctggtcccagcccttaggtaa 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55517514 tgagatgccgccagacactgctgccagactgggctggtcccagcccttaggtaa 55517461
Score = 311 bits (157), Expect = 9e-82
Identities = 200/208 (96%), Gaps = 6/208 (2%)
Strand = Plus / Minus
Query: 1 gtctggaaggcggcagggatggcggcggcgggaactggacccggcccgggagtgggtgca 60
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 55552522 gtctggaaggcg-cagggatggcgc--gcgggaactggacccggcccgggagtgggtgca 55552466
Query: 61 ggaaccggccc-aacagcggccgtaaatgcaacaccggcagaagaaggggagacgaagcc 119
| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 55552465 gaaaccggccccaacagcg-ccgtaaatgcaacaccggcagaagaaggggagacgaagcc 55552407
Query: 120 ggtagcagcggtagcagccgctccggctggcgaggggacgtctgttactccagccgcgga 179
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 55552406 ggtagcagcggtagcagc-gctccggctggcgaggggacgtctgttactccagccgcgga 55552348
Query: 180 gccagtgtcgggagaggcggaaagcggg 207
||||||||||||||||||||||||||||
Sbjct: 55552347 gccagtgtcgggagaggcggaaagcggg 55552320
Score = 289 bits (146), Expect = 3e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 274 gaaggtgctggggatacttcagaggtgatggatactcaggcgggctccgtggatgaagag 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55551212 gaaggtgctggggatacttcagaggtgatggatactcaggcgggctccgtggatgaagag 55551153
Query: 334 aatggccggcaattgggagaggtggagctacagtgtggaatatgtacaaagtggttcaca 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55551152 aatggccggcaattgggagaggtggagctacagtgtggaatatgtacaaagtggttcaca 55551093
Query: 394 gcagacacgttcggcatagatacctc 419
||||||||||||||||||||||||||
Sbjct: 55551092 gcagacacgttcggcatagatacctc 55551067
Score = 204 bits (103), Expect = 2e-49
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 1637 agatcattttttataaaaatggtgtcaaccaaggcgtggcttacaaagatattttcgagg 1696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55513349 agatcattttttataaaaatggtgtcaaccaaggcgtggcttacaaagatattttcgagg 55513290
Query: 1697 gggtttactttccggccatctcactatacaagagctgcacggt 1739
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55513289 gggtttactttccggccatctcactatacaagagctgcacggt 55513247
Score = 194 bits (98), Expect = 2e-46
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 699 gagtaaagaaagagatgtgttcttagtaaaggaacaccctgatcctgggagtaaggaccc 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55541289 gagtaaagaaagagatgtgttcttagtaaaggaacaccctgatcctgggagtaaggaccc 55541230
Query: 759 agaagaagattaccccaagtttggccttctggatcagg 796
||||||||||||||||||||||||||||||||||||||
Sbjct: 55541229 agaagaagattaccccaagtttggccttctggatcagg 55541192
Score = 194 bits (98), Expect = 2e-46
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 602 aggatatcataccatttattgataaatactgggagtgcatgacgaccagacagagacctg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55542411 aggatatcataccatttattgataaatactgggagtgcatgacgaccagacagagacctg 55542352
Query: 662 ggaaaatgacttggccaaataacattgttaaaacaatg 699
||||||||||||||||||||||||||||||||||||||
Sbjct: 55542351 ggaaaatgacttggccaaataacattgttaaaacaatg 55542314
Score = 190 bits (96), Expect = 2e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 1543 aaggctttgataaagttcaagagttatttgtattttgaagaaaaagacttcgtggataaa 1602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55514945 aaggctttgataaagttcaagagttatttgtattttgaagaaaaagacttcgtggataaa 55514886
Query: 1603 gcagagaagagcctaaagcagactccccatagcgag 1638
||||||||||||||||||||||||||||||||||||
Sbjct: 55514885 gcagagaagagcctaaagcagactccccatagcgag 55514850
Score = 190 bits (96), Expect = 2e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 509 acttgaaggaaatgtgccttagtgctttggccaacctaacgtggcagtctcgaacacagg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55547803 acttgaaggaaatgtgccttagtgctttggccaacctaacgtggcagtctcgaacacagg 55547744
Query: 569 atgaacacccaaaaaccatgttctccaaggataagg 604
||||||||||||||||||||||||||||||||||||
Sbjct: 55547743 atgaacacccaaaaaccatgttctccaaggataagg 55547708
Score = 188 bits (95), Expect = 9e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 871 ggaggaattgcagcaggaagcagtgggaaaggaagaggcgctaagcgcaagcagcaggat 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55538093 ggaggaattgcagcaggaagcagtgggaaaggaagaggcgctaagcgcaagcagcaggat 55538034
Query: 931 ggcggaaccacggggaccaccaagaaggcccggag 965
|||||||||||||||||||||||||||||||||||
Sbjct: 55538033 ggcggaaccacggggaccaccaagaaggcccggag 55537999
Score = 176 bits (89), Expect = 4e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 420 atcctgtctacctttcatgaccaactacagtttccactgcaatgtgtgccatcatagtgg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55548173 atcctgtctacctttcatgaccaactacagtttccactgcaatgtgtgccatcatagtgg 55548114
Query: 480 gaatacgtatttcctccggaagcaagcaa 508
|||||||||||||||||||||||||||||
Sbjct: 55548113 gaatacgtatttcctccggaagcaagcaa 55548085
Score = 159 bits (80), Expect = 8e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 793 caggatcttagtaacattggccctgcttatgacaaccaaaaacaaagcagcactgtttct 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55540340 caggatcttagtaacattggccctgcttatgacaaccaaaaacaaagcagcactgtttct 55540281
Query: 853 accagtgggaatctaaatgg 872
||||||||||||||||||||
Sbjct: 55540280 accagtgggaatctaaatgg 55540261
Score = 137 bits (69), Expect = 3e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 206 gggatgcaaactcggttgatgtaagtggtggcttggagacggaatcctctaatggaaaag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55551680 gggatgcaaactcggttgatgtaagtggtggcttggagacggaatcctctaatggaaaag 55551621
Query: 266 atacactag 274
|||||||||
Sbjct: 55551620 atacactag 55551612
Score = 111 bits (56), Expect = 2e-21
Identities = 64/67 (95%)
Strand = Plus / Minus
Query: 1737 ggtctccattaactttggaccatgcttcaagtatccgccgaaggatctggcttaccgccc 1796
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 55512316 ggtctccattaactttggaccatgcttncagtatccgccgaaggatctggcttaccgccc 55512257
Query: 1797 catgagt 1803
| |||||
Sbjct: 55512256 cgtgagt 55512250
Score = 81.8 bits (41), Expect = 2e-12
Identities = 50/52 (96%), Gaps = 1/52 (1%)
Strand = Plus / Minus
Query: 1798 atgagtgacatgggctggggcgccgtggtcgaacacactctggctgatgttt 1849
|||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 55512153 atgagtgacatgngctggggcgccgtggtcg-acacactctggctgatgttt 55512103
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 67,675,158
Number of extensions: 382
Number of successful extensions: 382
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 376
Number of HSP's successfully gapped: 17
Length of query: 2329
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2307
Effective length of database: 2,808,408,574
Effective search space: 6478998580218
Effective search space used: 6478998580218
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)