Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003359
(1114 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029398.1| lethal, Chr 7, Rinchik 6 [Bos taurus]. 395 e-110
>ref|NP_001029398.1| lethal, Chr 7, Rinchik 6 [Bos taurus].
Length = 197
Score = 395 bits (1016), Expect = e-110
Identities = 194/197 (98%), Positives = 196/197 (99%)
Frame = +3
Query: 231 MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD 410
MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGT+PFPEGMGGSVYFSYPD
Sbjct: 1 MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTVPFPEGMGGSVYFSYPD 60
Query: 411 SNGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVQTPSVAQIGISVELLDS 590
SNGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFG MNIV+TPSVAQIGISVELLDS
Sbjct: 61 SNGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGTMNIVRTPSVAQIGISVELLDS 120
Query: 591 LAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKW 770
LAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKW
Sbjct: 121 LAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKW 180
Query: 771 YENFQRRLAQNPLFWKT 821
YENFQRRLAQNPLFWKT
Sbjct: 181 YENFQRRLAQNPLFWKT 197
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,063,422
Number of extensions: 1161519
Number of successful extensions: 4122
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4104
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 267
Effective length of database: 14,240,222
Effective search space: 3802139274
Effective search space used: 3802139274
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003359
(1114 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533984.1| PREDICTED: similar to CG13926-PA isoform 1 [Can... 395 e-110
Alignment gi|XP_857550.1| PREDICTED: similar to CG13926-PA isoform 7 [Can... 361 e-100
Alignment gi|XP_857468.1| PREDICTED: similar to CG13926-PA isoform 5 [Can... 360 1e-99
Alignment gi|XP_857510.1| PREDICTED: similar to CG13926-PA isoform 6 [Can... 344 8e-95
Alignment gi|XP_857425.1| PREDICTED: similar to CG13926-PA isoform 4 [Can... 194 1e-49
Alignment gi|XP_857343.1| PREDICTED: similar to CG13926-PA isoform 2 [Can... 186 5e-47
Alignment gi|XP_857386.1| PREDICTED: similar to CG13926-PA isoform 3 [Can... 183 2e-46
>ref|XP_533984.1| PREDICTED: similar to CG13926-PA isoform 1 [Canis familiaris].
Length = 197
Score = 395 bits (1016), Expect = e-110
Identities = 195/197 (98%), Positives = 197/197 (100%)
Frame = +3
Query: 231 MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD 410
MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD
Sbjct: 1 MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD 60
Query: 411 SNGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVQTPSVAQIGISVELLDS 590
S+GMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIV+TPSVAQIGISVELLDS
Sbjct: 61 SSGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVRTPSVAQIGISVELLDS 120
Query: 591 LAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKW 770
LAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKW
Sbjct: 121 LAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKW 180
Query: 771 YENFQRRLAQNPLFWKT 821
YENFQRRLAQNPLFWKT
Sbjct: 181 YENFQRRLAQNPLFWKT 197
>ref|XP_857550.1| PREDICTED: similar to CG13926-PA isoform 7 [Canis familiaris].
Length = 200
Score = 361 bits (927), Expect = e-100
Identities = 179/181 (98%), Positives = 181/181 (100%)
Frame = +3
Query: 231 MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD 410
MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD
Sbjct: 1 MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD 60
Query: 411 SNGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVQTPSVAQIGISVELLDS 590
S+GMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIV+TPSVAQIGISVELLDS
Sbjct: 61 SSGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVRTPSVAQIGISVELLDS 120
Query: 591 LAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKW 770
LAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKW
Sbjct: 121 LAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKW 180
Query: 771 Y 773
Y
Sbjct: 181 Y 181
>ref|XP_857468.1| PREDICTED: similar to CG13926-PA isoform 5 [Canis familiaris].
Length = 183
Score = 360 bits (925), Expect = 1e-99
Identities = 181/197 (91%), Positives = 183/197 (92%)
Frame = +3
Query: 231 MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD 410
MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD
Sbjct: 1 MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD 60
Query: 411 SNGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVQTPSVAQIGISVELLDS 590
S+GMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIV+TPSVAQIGISVELLDS
Sbjct: 61 SSGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVRTPSVAQIGISVELLDS 120
Query: 591 LAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKW 770
LAQQTP FTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKW
Sbjct: 121 LAQQTP--------------FTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKW 166
Query: 771 YENFQRRLAQNPLFWKT 821
YENFQRRLAQNPLFWKT
Sbjct: 167 YENFQRRLAQNPLFWKT 183
>ref|XP_857510.1| PREDICTED: similar to CG13926-PA isoform 6 [Canis familiaris].
Length = 177
Score = 344 bits (883), Expect = 8e-95
Identities = 175/197 (88%), Positives = 177/197 (89%)
Frame = +3
Query: 231 MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD 410
MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD
Sbjct: 1 MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD 60
Query: 411 SNGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVQTPSVAQIGISVELLDS 590
S+GMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIV+TPSVAQIGISVELLDS
Sbjct: 61 SSGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVRTPSVAQIGISVELLDS 120
Query: 591 LAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKW 770
LAQQTPVGNAAVSSVDSFT QAQMTPSPSEMFIPANVVLKW
Sbjct: 121 LAQQTPVGNAAVSSVDSFT--------------------QAQMTPSPSEMFIPANVVLKW 160
Query: 771 YENFQRRLAQNPLFWKT 821
YENFQRRLAQNPLFWKT
Sbjct: 161 YENFQRRLAQNPLFWKT 177
>ref|XP_857425.1| PREDICTED: similar to CG13926-PA isoform 4 [Canis familiaris].
Length = 98
Score = 194 bits (494), Expect = 1e-49
Identities = 97/98 (98%), Positives = 98/98 (100%)
Frame = +3
Query: 528 MNIVQTPSVAQIGISVELLDSLAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVS 707
MNIV+TPSVAQIGISVELLDSLAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVS
Sbjct: 1 MNIVRTPSVAQIGISVELLDSLAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVS 60
Query: 708 QAQMTPSPSEMFIPANVVLKWYENFQRRLAQNPLFWKT 821
QAQMTPSPSEMFIPANVVLKWYENFQRRLAQNPLFWKT
Sbjct: 61 QAQMTPSPSEMFIPANVVLKWYENFQRRLAQNPLFWKT 98
>ref|XP_857343.1| PREDICTED: similar to CG13926-PA isoform 2 [Canis familiaris].
Length = 90
Score = 186 bits (471), Expect = 5e-47
Identities = 89/90 (98%), Positives = 90/90 (100%)
Frame = +3
Query: 231 MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD 410
MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD
Sbjct: 1 MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD 60
Query: 411 SNGMPVWQLLGFVTNGKPSAIFKISGLKSG 500
S+GMPVWQLLGFVTNGKPSAIFKISGLKSG
Sbjct: 61 SSGMPVWQLLGFVTNGKPSAIFKISGLKSG 90
>ref|XP_857386.1| PREDICTED: similar to CG13926-PA isoform 3 [Canis familiaris].
Length = 117
Score = 183 bits (465), Expect = 2e-46
Identities = 88/89 (98%), Positives = 89/89 (100%)
Frame = +3
Query: 231 MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD 410
MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD
Sbjct: 1 MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD 60
Query: 411 SNGMPVWQLLGFVTNGKPSAIFKISGLKS 497
S+GMPVWQLLGFVTNGKPSAIFKISGLKS
Sbjct: 61 SSGMPVWQLLGFVTNGKPSAIFKISGLKS 89
Score = 62.8 bits (151), Expect = 6e-10
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = +2
Query: 650 VHTKDVGQLLQFCFIICCLSGPDDTKSI 733
VHTKDVGQLLQFCFIICC+SGPDDTKSI
Sbjct: 90 VHTKDVGQLLQFCFIICCVSGPDDTKSI 117
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,922,135
Number of extensions: 1199423
Number of successful extensions: 4276
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4257
Number of HSP's successfully gapped: 8
Length of query: 371
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 267
Effective length of database: 15,407,560
Effective search space: 4113818520
Effective search space used: 4113818520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003359
(1114 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057485.2| lethal, Chr 7, Rinchik 6 [Homo sapiens]. 395 e-110
>ref|NP_057485.2| lethal, Chr 7, Rinchik 6 [Homo sapiens].
Length = 197
Score = 395 bits (1014), Expect = e-110
Identities = 194/197 (98%), Positives = 197/197 (100%)
Frame = +3
Query: 231 MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD 410
MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYE+INHVVVFMLGTIPFPEGMGGSVYFSYPD
Sbjct: 1 MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYESINHVVVFMLGTIPFPEGMGGSVYFSYPD 60
Query: 411 SNGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVQTPSVAQIGISVELLDS 590
SNGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIV+TPSVAQIGISVELLDS
Sbjct: 61 SNGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVRTPSVAQIGISVELLDS 120
Query: 591 LAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKW 770
+AQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKW
Sbjct: 121 MAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKW 180
Query: 771 YENFQRRLAQNPLFWKT 821
YENFQRRLAQNPLFWKT
Sbjct: 181 YENFQRRLAQNPLFWKT 197
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,083,100
Number of extensions: 1177358
Number of successful extensions: 3869
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3854
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 267
Effective length of database: 14,868,908
Effective search space: 3969998436
Effective search space used: 3969998436
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003359
(1114 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080580.1| lethal, Chr 7, Rinchik 6 [Mus musculus]. 392 e-109
>ref|NP_080580.1| lethal, Chr 7, Rinchik 6 [Mus musculus].
Length = 197
Score = 392 bits (1006), Expect = e-109
Identities = 192/197 (97%), Positives = 197/197 (100%)
Frame = +3
Query: 231 MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD 410
MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD
Sbjct: 1 MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPD 60
Query: 411 SNGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVQTPSVAQIGISVELLDS 590
SNG+PVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIV+TPSVAQIGISVELLDS
Sbjct: 61 SNGVPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVRTPSVAQIGISVELLDS 120
Query: 591 LAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKW 770
LAQQTPVG+AAVSSVDSFTQFTQKMLDNFYNFASSFA+SQAQMTP+PSEMFIPANVVLKW
Sbjct: 121 LAQQTPVGSAAVSSVDSFTQFTQKMLDNFYNFASSFALSQAQMTPNPSEMFIPANVVLKW 180
Query: 771 YENFQRRLAQNPLFWKT 821
YENFQRRLAQNPLFWKT
Sbjct: 181 YENFQRRLAQNPLFWKT 197
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,806,915
Number of extensions: 990951
Number of successful extensions: 3404
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3391
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 268
Effective length of database: 12,523,851
Effective search space: 3356392068
Effective search space used: 3356392068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003359
(1114 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129780.2| PREDICTED: uncharacterized protein C11orf73 ... 380 e-105
Alignment gi|XP_003129784.1| PREDICTED: uncharacterized protein C11orf73 ... 145 5e-35
>ref|XP_003129780.2| PREDICTED: uncharacterized protein C11orf73 homolog [Sus scrofa].
Length = 354
Score = 380 bits (975), Expect = e-105
Identities = 194/214 (90%), Positives = 196/214 (91%), Gaps = 3/214 (1%)
Frame = +3
Query: 189 PASGPCRLSGAAAAMFGCLVAGRL---VQTAAQQVAEDKFVFDLPDYENINHVVVFMLGT 359
PA GP L + L+ G VQTAAQQVAEDKFVFDLPDYENINHVVVFMLGT
Sbjct: 141 PAQGPLGLVVLYGSWRSFLIWGGEQLHVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGT 200
Query: 360 IPFPEGMGGSVYFSYPDSNGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIV 539
IPFPEGMGGSVYFSYPDSNGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIV
Sbjct: 201 IPFPEGMGGSVYFSYPDSNGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIV 260
Query: 540 QTPSVAQIGISVELLDSLAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQM 719
QTPSVAQIGISVELLDSLAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQM
Sbjct: 261 QTPSVAQIGISVELLDSLAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQM 320
Query: 720 TPSPSEMFIPANVVLKWYENFQRRLAQNPLFWKT 821
TPSPSEMFIPANVVLKWYENFQRRLAQNPLFWKT
Sbjct: 321 TPSPSEMFIPANVVLKWYENFQRRLAQNPLFWKT 354
>ref|XP_003129784.1| PREDICTED: uncharacterized protein C11orf73 homolog isoform 2 [Sus
scrofa].
Length = 78
Score = 145 bits (365), Expect = 5e-35
Identities = 78/98 (79%), Positives = 78/98 (79%)
Frame = +3
Query: 528 MNIVQTPSVAQIGISVELLDSLAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVS 707
MNIVQTPSVAQIGISVELLDSLAQQTPVGNAAVSSVDSFTQ
Sbjct: 1 MNIVQTPSVAQIGISVELLDSLAQQTPVGNAAVSSVDSFTQ------------------- 41
Query: 708 QAQMTPSPSEMFIPANVVLKWYENFQRRLAQNPLFWKT 821
AQMTPSPSEMFIPANVVLKWYENFQRRLAQNPLFWKT
Sbjct: 42 -AQMTPSPSEMFIPANVVLKWYENFQRRLAQNPLFWKT 78
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,428,482
Number of extensions: 747681
Number of successful extensions: 2649
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2638
Number of HSP's successfully gapped: 2
Length of query: 371
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 271
Effective length of database: 8,854,232
Effective search space: 2399496872
Effective search space used: 2399496872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003359
(1114 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 513 e-143
gb|GL895392.2| Sus scrofa unplaced genomic scaffold ChrUScaf3276 389 e-105
Sscrofa_Chr14 234 8e-59
>Sscrofa_Chr09
|| Length = 153670197
Score = 513 bits (259), Expect = e-143
Identities = 259/259 (100%)
Strand = Plus / Minus
Query: 5 aagccccggaagtacttgtcgctagagaggcgctctggttaggaggggaggtcagaggtc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22360198 aagccccggaagtacttgtcgctagagaggcgctctggttaggaggggaggtcagaggtc 22360139
Query: 65 gcgggggtagaaggcgttcctgccgctggcctagtcgttatgtagtggaggggtaggcgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22360138 gcgggggtagaaggcgttcctgccgctggcctagtcgttatgtagtggaggggtaggcgc 22360079
Query: 125 cctcctccatgttctggaaggttcttggtctcgactagggcagaagccccaggacttcta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22360078 cctcctccatgttctggaaggttcttggtctcgactagggcagaagccccaggacttcta 22360019
Query: 185 gtccccggcttcgggtccctgccggctgagcggagccgccgccgccatgtttggctgctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22360018 gtccccggcttcgggtccctgccggctgagcggagccgccgccgccatgtttggctgctt 22359959
Query: 245 ggtggcggggaggctggtg 263
|||||||||||||||||||
Sbjct: 22359958 ggtggcggggaggctggtg 22359940
Score = 513 bits (259), Expect = e-143
Identities = 310/335 (92%)
Strand = Plus / Minus
Query: 769 ggtatgaaaactttcaaagacgactagcacagaaccctctcttttggaaaacataatttg 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22493838 ggtatgaaaactttcaaagacgactagcacagaaccctctcttttggaaaacataatttg 22493779
Query: 829 aataaaataatttttaatggattctgaaatttgtcatgttttgaagataatgactgttta 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22493778 aataaaataatttttaatggattctgaaatttgtcatgttttgaagataatgactgttta 22493719
Query: 889 aaagcatgaagtcaaaaggatcatgaagctaagtttaaaaactgctttagtaactatgaa 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22493718 aaagcatgaagtcaaaaggatcatgaagctaagtttaaaaactgctttagtaactatgaa 22493659
Query: 949 gcttaattgaaatctttatnnnnnnnnnnnnnnnnnnnnnnntngaaatatgttcatcat 1008
||||||||||||||||||| | |||||||||||||||
Sbjct: 22493658 gcttaattgaaatctttataaaaaattaaaaacattgaaaaatgaaaatatgttcatcat 22493599
Query: 1009 taatgacttttttcccttaagcttaaaatactcagagacaaaacattttgttttggctat 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22493598 taatgacttttttcccttaagcttaaaatactcagagacaaaacattttgttttggctat 22493539
Query: 1069 gattcgttttttacttaaaaataaagcatatttac 1103
|||||||||||||||||||||||||||||||||||
Sbjct: 22493538 gattcgttttttacttaaaaataaagcatatttac 22493504
Score = 478 bits (241), Expect = e-132
Identities = 241/241 (100%)
Strand = Plus / Minus
Query: 260 ggtgcaaacagctgcacagcaagtggcagaggataaatttgtttttgacttgcccgatta 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22356425 ggtgcaaacagctgcacagcaagtggcagaggataaatttgtttttgacttgcccgatta 22356366
Query: 320 tgaaaatatcaaccatgttgtggtttttatgctgggaacaatcccatttcctgagggaat 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22356365 tgaaaatatcaaccatgttgtggtttttatgctgggaacaatcccatttcctgagggaat 22356306
Query: 380 gggaggatctgtctacttttcctatcctgattcaaatggaatgccagtatggcagctcct 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22356305 gggaggatctgtctacttttcctatcctgattcaaatggaatgccagtatggcagctcct 22356246
Query: 440 aggatttgtcacgaatgggaaaccaagtgccatcttcaaaatttcaggtcttaaatctgg 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22356245 aggatttgtcacgaatgggaaaccaagtgccatcttcaaaatttcaggtcttaaatctgg 22356186
Query: 500 t 500
|
Sbjct: 22356185 t 22356185
Score = 295 bits (149), Expect = 3e-77
Identities = 152/153 (99%)
Strand = Plus / Minus
Query: 498 ggtgaaggaagccagcacccttttggagccatgaatattgtccaaactccgtctgttgct 557
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22501578 ggtgaaggaagccaacacccttttggagccatgaatattgtccaaactccgtctgttgct 22501519
Query: 558 cagattggaatttcagtggaattactggacagtctggctcagcagactcctgtaggtaat 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22501518 cagattggaatttcagtggaattactggacagtctggctcagcagactcctgtaggtaat 22501459
Query: 618 gctgctgtatcatcagttgactcattcactcag 650
|||||||||||||||||||||||||||||||||
Sbjct: 22501458 gctgctgtatcatcagttgactcattcactcag 22501426
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 649 agttcacacaaaagatgttggacaacttctacaattttgcttcatcatttgctgtctctc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22495116 agttcacacaaaagatgttggacaacttctacaattttgcttcatcatttgctgtctctc 22495057
Query: 709 aggcccagatgacaccaagtccatctgaaatgttcatcccagcaaatgtggttctgaaat 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22495056 aggcccagatgacaccaagtccatctgaaatgttcatcccagcaaatgtggttctgaaat 22494997
Query: 769 ggtatg 774
||||||
Sbjct: 22494996 ggtatg 22494991
>gb|GL895392.2| Sus scrofa unplaced genomic scaffold ChrUScaf3276
Length = 71537
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Plus
Query: 5 aagccccggaagtacttgtcgctagagaggcgctctggttaggaggggaggtcagaggtc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25872 aagccccggaagtacttgtcgctagagaggcgctctggttaggaggggaggtcagaggtc 25931
Query: 65 gcgggggtagaaggcgttcctgccgctggcctagtcgttatgtagtggaggggtaggcgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25932 gcgggggtagaaggcgttcctgccgctggcctagtcgttatgtagtggaggggtaggcgc 25991
Query: 125 cctcctccatgttctggaaggttcttggtctcgactagggcagaagccccaggacttcta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25992 cctcctccatgttctggaaggttcttggtctcgactagggcagaagccccaggacttcta 26051
Query: 185 gtccccggcttcgggt 200
||||||||||||||||
Sbjct: 26052 gtccccggcttcgggt 26067
Score = 303 bits (153), Expect = 1e-79
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 498 ggtgaaggaagccagcacccttttggagccatgaatattgtccaaactccgtctgttgct 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49371 ggtgaaggaagccagcacccttttggagccatgaatattgtccaaactccgtctgttgct 49430
Query: 558 cagattggaatttcagtggaattactggacagtctggctcagcagactcctgtaggtaat 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49431 cagattggaatttcagtggaattactggacagtctggctcagcagactcctgtaggtaat 49490
Query: 618 gctgctgtatcatcagttgactcattcactcag 650
|||||||||||||||||||||||||||||||||
Sbjct: 49491 gctgctgtatcatcagttgactcattcactcag 49523
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 649 agttcacacaaaagatgttggacaacttctacaattttgcttcatcatttgctgtctctc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55484 agttcacacaaaagatgttggacaacttctacaattttgcttcatcatttgctgtctctc 55543
Query: 709 aggcccagatgacaccaagtccatctgaaatgttcatcccagcaaatgtggttctgaaat 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55544 aggcccagatgacaccaagtccatctgaaatgttcatcccagcaaatgtggttctgaaat 55603
Query: 769 ggtatg 774
||||||
Sbjct: 55604 ggtatg 55609
>Sscrofa_Chr14
|| Length = 153851969
Score = 234 bits (118), Expect = 8e-59
Identities = 185/206 (89%), Gaps = 1/206 (0%)
Strand = Plus / Plus
Query: 261 gtgcaaacagctgcacagcaagtggcagaggataaatttgtttttgacttgcccgattat 320
|||||||| ||||| |||||||||||||| ||||||||||||||| ||||| | | ||
Sbjct: 68760487 gtgcaaaccactgcatggcaagtggcagagggtaaatttgtttttgatttgcctgctgat 68760546
Query: 321 gaaaatatcaaccatgttgtggtttttatgctgggaacaatcccatttcctgagggaatg 380
|||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 68760547 gaaaatatcaacaatgttgtgggttttatgctgggaacaatcccatttcctaagggaatg 68760606
Query: 381 ggaggatctgtctac-ttttcctatcctgattcaaatggaatgccagtatggcagctcct 439
||||||||||| ||| |||| |||||||||||||||||||| || || |||||| |||||
Sbjct: 68760607 ggaggatctgtttacttttttctatcctgattcaaatggaaggctaggatggcaactcct 68760666
Query: 440 aggatttgtcacgaatgggaaaccaa 465
||||||||||| |||||||||||||
Sbjct: 68760667 gggatttgtcaccaatgggaaaccaa 68760692
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,668,670
Number of extensions: 419
Number of successful extensions: 419
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 418
Number of HSP's successfully gapped: 10
Length of query: 1114
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1093
Effective length of database: 2,808,413,156
Effective search space: 3069595579508
Effective search space used: 3069595579508
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)