Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003365
(1722 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092428.1| cyclin-dependent kinase inhibitor 1 [Bos tau... 259 5e-69
Alignment gi|NP_001093816.1| cyclin-dependent kinase inhibitor 1B [Bos ta... 64 3e-10
>ref|NP_001092428.1| cyclin-dependent kinase inhibitor 1 [Bos taurus].
Length = 161
Score = 259 bits (662), Expect = 5e-69
Identities = 131/164 (79%), Positives = 135/164 (82%)
Frame = +3
Query: 99 MSESTRDAHQIPRSSKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNFDFITETPLE 278
MSE +RDAHQIPRSSKACR LFGPVDSEQLRQDCDALMASCVQEARERWNFDF+TETPLE
Sbjct: 1 MSELSRDAHQIPRSSKACRCLFGPVDSEQLRQDCDALMASCVQEARERWNFDFVTETPLE 60
Query: 279 GDFAWERVRGLGLPKIYLPTGPRGTWDDLGGGKRPSTSPALLQGTSQEDHVDLLLSCTLV 458
GDFAWERVRGLGLPK+YLP GPR DDLGGGKRPS S ALLQGTSQEDH+DL LSCTLV
Sbjct: 61 GDFAWERVRGLGLPKLYLPVGPR---DDLGGGKRPSPSSALLQGTSQEDHLDLSLSCTLV 117
Query: 459 XXXXXXXXXXXXXXXXXXXRKRRQTSMTDFYHSKRRLIFSKRKP 590
RKRRQTSMTDFYHSKRRLI SKRKP
Sbjct: 118 TRSPERPEGTPGGPGPSQGRKRRQTSMTDFYHSKRRLICSKRKP 161
>ref|NP_001093816.1| cyclin-dependent kinase inhibitor 1B [Bos taurus].
Length = 198
Score = 64.3 bits (155), Expect = 3e-10
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Frame = +3
Query: 78 LRRATGTMSESTRDAHQI--PRSSKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNF 251
+R + G+ S DA Q P+ S ACR LFGPV+ E+L +D + + ++ +WNF
Sbjct: 4 VRVSNGSPSLERMDARQAEYPKPS-ACRNLFGPVNHEELTRDLEKHCRDMEEASQRKWNF 62
Query: 252 DFITETPLEGDFAWERVRGLGLPKIY--LPTGPRG 350
DF PLEG + W+ V LP+ Y P P+G
Sbjct: 63 DFKNHKPLEGKYEWQEVEKGSLPEFYHRPPRPPKG 97
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 72,872,864
Number of extensions: 2289513
Number of successful extensions: 11471
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 11231
Number of HSP's successfully gapped: 2
Length of query: 574
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 466
Effective length of database: 14,107,870
Effective search space: 6574267420
Effective search space used: 6574267420
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003365
(1722 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532125.2| PREDICTED: similar to cyclin-dependent kinase i... 274 2e-73
Alignment gi|NP_001002957.1| cyclin-dependent kinase inhibitor 1B [Canis ... 67 5e-11
>ref|XP_532125.2| PREDICTED: similar to cyclin-dependent kinase inhibitor 1A [Canis
familiaris].
Length = 208
Score = 274 bits (701), Expect = 2e-73
Identities = 136/183 (74%), Positives = 145/183 (79%)
Frame = +3
Query: 42 SGAGRGFSETPTLRRATGTMSESTRDAHQIPRSSKACRRLFGPVDSEQLRQDCDALMASC 221
SG GRGF+E TL A G MSE +RDA IP SKACRRLFGPVDSEQLR+DCDALMASC
Sbjct: 26 SGGGRGFAEPETLGGAAGAMSEPSRDALPIPHGSKACRRLFGPVDSEQLRRDCDALMASC 85
Query: 222 VQEARERWNFDFITETPLEGDFAWERVRGLGLPKIYLPTGPRGTWDDLGGGKRPSTSPAL 401
VQEARERWNFDF+TETPLEGDFAWERVRGLGL K+ LP GPRG DDLGGGKRP TSPAL
Sbjct: 86 VQEARERWNFDFVTETPLEGDFAWERVRGLGLSKVSLPAGPRGGRDDLGGGKRPGTSPAL 145
Query: 402 LQGTSQEDHVDLLLSCTLVXXXXXXXXXXXXXXXXXXXRKRRQTSMTDFYHSKRRLIFSK 581
LQGT+QEDH+DL L+CTL+ RKRRQTSMTDFYHSKRRLIFSK
Sbjct: 146 LQGTAQEDHLDLSLTCTLLPHSPERPEASPGVPGTSQGRKRRQTSMTDFYHSKRRLIFSK 205
Query: 582 RKP 590
RKP
Sbjct: 206 RKP 208
>ref|NP_001002957.1| cyclin-dependent kinase inhibitor 1B [Canis lupus familiaris].
Length = 198
Score = 67.0 bits (162), Expect = 5e-11
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Frame = +3
Query: 78 LRRATGTMSESTRDAHQI--PRSSKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNF 251
+R + G+ + RDA Q P+ S ACR LFGPV+ E+L +D + + ++ +WNF
Sbjct: 4 VRVSNGSPTSERRDAKQAEYPKPS-ACRNLFGPVNHEELTRDLEKHCIDMEEASQNKWNF 62
Query: 252 DFITETPLEGDFAWERVRGLGLPKIYL--PTGPRG 350
DF PLEG + W+ V LP+ Y P P+G
Sbjct: 63 DFQNHKPLEGKYEWQEVEKGSLPEFYYRPPRPPKG 97
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 76,055,046
Number of extensions: 2359078
Number of successful extensions: 11886
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 11678
Number of HSP's successfully gapped: 2
Length of query: 574
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 466
Effective length of database: 15,274,216
Effective search space: 7117784656
Effective search space used: 7117784656
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003365
(1722 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_510867.1| cyclin-dependent kinase inhibitor 1 [Homo sapie... 249 4e-66
Alignment gi|NP_000380.1| cyclin-dependent kinase inhibitor 1 [Homo sapie... 249 4e-66
Alignment gi|NP_001207707.1| cyclin-dependent kinase inhibitor 1 [Homo sa... 249 4e-66
Alignment gi|NP_001207706.1| cyclin-dependent kinase inhibitor 1 [Homo sa... 249 4e-66
Alignment gi|NP_004055.1| cyclin-dependent kinase inhibitor 1B [Homo sapi... 67 5e-11
Alignment gi|NP_000067.1| cyclin-dependent kinase inhibitor 1C isoform a ... 54 3e-07
Alignment gi|NP_001116103.1| cyclin-dependent kinase inhibitor 1C isoform... 52 1e-06
Alignment gi|NP_001116102.1| cyclin-dependent kinase inhibitor 1C isoform... 52 1e-06
>ref|NP_510867.1| cyclin-dependent kinase inhibitor 1 [Homo sapiens].
Length = 164
Score = 249 bits (637), Expect = 4e-66
Identities = 122/164 (74%), Positives = 130/164 (79%)
Frame = +3
Query: 99 MSESTRDAHQIPRSSKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNFDFITETPLE 278
MSE D Q P SKACRRLFGPVDSEQL +DCDALMA C+QEARERWNFDF+TETPLE
Sbjct: 1 MSEPAGDVRQNPCGSKACRRLFGPVDSEQLSRDCDALMAGCIQEARERWNFDFVTETPLE 60
Query: 279 GDFAWERVRGLGLPKIYLPTGPRGTWDDLGGGKRPSTSPALLQGTSQEDHVDLLLSCTLV 458
GDFAWERVRGLGLPK+YLPTGPR D+LGGG+RP TSPALLQGT++EDHVDL LSCTLV
Sbjct: 61 GDFAWERVRGLGLPKLYLPTGPRRGRDELGGGRRPGTSPALLQGTAEEDHVDLSLSCTLV 120
Query: 459 XXXXXXXXXXXXXXXXXXXRKRRQTSMTDFYHSKRRLIFSKRKP 590
RKRRQTSMTDFYHSKRRLIFSKRKP
Sbjct: 121 PRSGEQAEGSPGGPGDSQGRKRRQTSMTDFYHSKRRLIFSKRKP 164
>ref|NP_000380.1| cyclin-dependent kinase inhibitor 1 [Homo sapiens].
Length = 164
Score = 249 bits (637), Expect = 4e-66
Identities = 122/164 (74%), Positives = 130/164 (79%)
Frame = +3
Query: 99 MSESTRDAHQIPRSSKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNFDFITETPLE 278
MSE D Q P SKACRRLFGPVDSEQL +DCDALMA C+QEARERWNFDF+TETPLE
Sbjct: 1 MSEPAGDVRQNPCGSKACRRLFGPVDSEQLSRDCDALMAGCIQEARERWNFDFVTETPLE 60
Query: 279 GDFAWERVRGLGLPKIYLPTGPRGTWDDLGGGKRPSTSPALLQGTSQEDHVDLLLSCTLV 458
GDFAWERVRGLGLPK+YLPTGPR D+LGGG+RP TSPALLQGT++EDHVDL LSCTLV
Sbjct: 61 GDFAWERVRGLGLPKLYLPTGPRRGRDELGGGRRPGTSPALLQGTAEEDHVDLSLSCTLV 120
Query: 459 XXXXXXXXXXXXXXXXXXXRKRRQTSMTDFYHSKRRLIFSKRKP 590
RKRRQTSMTDFYHSKRRLIFSKRKP
Sbjct: 121 PRSGEQAEGSPGGPGDSQGRKRRQTSMTDFYHSKRRLIFSKRKP 164
>ref|NP_001207707.1| cyclin-dependent kinase inhibitor 1 [Homo sapiens].
Length = 164
Score = 249 bits (637), Expect = 4e-66
Identities = 122/164 (74%), Positives = 130/164 (79%)
Frame = +3
Query: 99 MSESTRDAHQIPRSSKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNFDFITETPLE 278
MSE D Q P SKACRRLFGPVDSEQL +DCDALMA C+QEARERWNFDF+TETPLE
Sbjct: 1 MSEPAGDVRQNPCGSKACRRLFGPVDSEQLSRDCDALMAGCIQEARERWNFDFVTETPLE 60
Query: 279 GDFAWERVRGLGLPKIYLPTGPRGTWDDLGGGKRPSTSPALLQGTSQEDHVDLLLSCTLV 458
GDFAWERVRGLGLPK+YLPTGPR D+LGGG+RP TSPALLQGT++EDHVDL LSCTLV
Sbjct: 61 GDFAWERVRGLGLPKLYLPTGPRRGRDELGGGRRPGTSPALLQGTAEEDHVDLSLSCTLV 120
Query: 459 XXXXXXXXXXXXXXXXXXXRKRRQTSMTDFYHSKRRLIFSKRKP 590
RKRRQTSMTDFYHSKRRLIFSKRKP
Sbjct: 121 PRSGEQAEGSPGGPGDSQGRKRRQTSMTDFYHSKRRLIFSKRKP 164
>ref|NP_001207706.1| cyclin-dependent kinase inhibitor 1 [Homo sapiens].
Length = 164
Score = 249 bits (637), Expect = 4e-66
Identities = 122/164 (74%), Positives = 130/164 (79%)
Frame = +3
Query: 99 MSESTRDAHQIPRSSKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNFDFITETPLE 278
MSE D Q P SKACRRLFGPVDSEQL +DCDALMA C+QEARERWNFDF+TETPLE
Sbjct: 1 MSEPAGDVRQNPCGSKACRRLFGPVDSEQLSRDCDALMAGCIQEARERWNFDFVTETPLE 60
Query: 279 GDFAWERVRGLGLPKIYLPTGPRGTWDDLGGGKRPSTSPALLQGTSQEDHVDLLLSCTLV 458
GDFAWERVRGLGLPK+YLPTGPR D+LGGG+RP TSPALLQGT++EDHVDL LSCTLV
Sbjct: 61 GDFAWERVRGLGLPKLYLPTGPRRGRDELGGGRRPGTSPALLQGTAEEDHVDLSLSCTLV 120
Query: 459 XXXXXXXXXXXXXXXXXXXRKRRQTSMTDFYHSKRRLIFSKRKP 590
RKRRQTSMTDFYHSKRRLIFSKRKP
Sbjct: 121 PRSGEQAEGSPGGPGDSQGRKRRQTSMTDFYHSKRRLIFSKRKP 164
>ref|NP_004055.1| cyclin-dependent kinase inhibitor 1B [Homo sapiens].
Length = 198
Score = 67.0 bits (162), Expect = 5e-11
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Frame = +3
Query: 78 LRRATGTMSESTRDAHQI--PRSSKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNF 251
+R + G+ S DA Q P+ S ACR LFGPVD E+L +D + + ++ +WNF
Sbjct: 4 VRVSNGSPSLERMDARQAEHPKPS-ACRNLFGPVDHEELTRDLEKHCRDMEEASQRKWNF 62
Query: 252 DFITETPLEGDFAWERVRGLGLPKIYL--PTGPRG 350
DF PLEG + W+ V LP+ Y P P+G
Sbjct: 63 DFQNHKPLEGKYEWQEVEKGSLPEFYYRPPRPPKG 97
>ref|NP_000067.1| cyclin-dependent kinase inhibitor 1C isoform a [Homo sapiens].
Length = 316
Score = 54.3 bits (129), Expect = 3e-07
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = +3
Query: 84 RATGTMSEST-RDAHQIPRSSKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNFDFI 260
R+T TM R + + ACR LFGPVD E+L ++ A +A E + RW++DF
Sbjct: 7 RSTSTMERLVARGTFPVLVRTSACRSLFGPVDHEELSRELQARLAELNAEDQNRWDYDFQ 66
Query: 261 TETPLEGD--FAWERVRGLGLPKIYLPT 338
+ PL G W V +P Y T
Sbjct: 67 QDMPLRGPGRLQWTEVDSDSVPAFYRET 94
>ref|NP_001116103.1| cyclin-dependent kinase inhibitor 1C isoform b [Homo sapiens].
Length = 305
Score = 52.4 bits (124), Expect = 1e-06
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +3
Query: 141 SKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNFDFITETPLEGD--FAWERVRGLG 314
+ ACR LFGPVD E+L ++ A +A E + RW++DF + PL G W V
Sbjct: 16 TSACRSLFGPVDHEELSRELQARLAELNAEDQNRWDYDFQQDMPLRGPGRLQWTEVDSDS 75
Query: 315 LPKIYLPT 338
+P Y T
Sbjct: 76 VPAFYRET 83
>ref|NP_001116102.1| cyclin-dependent kinase inhibitor 1C isoform b [Homo sapiens].
Length = 305
Score = 52.4 bits (124), Expect = 1e-06
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +3
Query: 141 SKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNFDFITETPLEGD--FAWERVRGLG 314
+ ACR LFGPVD E+L ++ A +A E + RW++DF + PL G W V
Sbjct: 16 TSACRSLFGPVDHEELSRELQARLAELNAEDQNRWDYDFQQDMPLRGPGRLQWTEVDSDS 75
Query: 315 LPKIYLPT 338
+P Y T
Sbjct: 76 VPAFYRET 83
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 74,309,500
Number of extensions: 2289859
Number of successful extensions: 11031
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 10832
Number of HSP's successfully gapped: 8
Length of query: 574
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 466
Effective length of database: 14,737,052
Effective search space: 6867466232
Effective search space used: 6867466232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003365
(1722 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001104569.1| cyclin-dependent kinase inhibitor 1 [Mus mus... 211 1e-54
Alignment gi|NP_031695.1| cyclin-dependent kinase inhibitor 1 [Mus muscul... 211 1e-54
Alignment gi|NP_034005.2| cyclin-dependent kinase inhibitor 1B [Mus muscu... 63 8e-10
Alignment gi|NP_001155096.1| cyclin-dependent kinase inhibitor 1C isoform... 53 6e-07
Alignment gi|NP_034006.3| cyclin-dependent kinase inhibitor 1C isoform 2 ... 51 2e-06
>ref|NP_001104569.1| cyclin-dependent kinase inhibitor 1 [Mus musculus].
Length = 159
Score = 211 bits (537), Expect = 1e-54
Identities = 107/158 (67%), Positives = 116/158 (73%)
Frame = +3
Query: 117 DAHQIPRSSKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNFDFITETPLEGDFAWE 296
D +P SK CR LFGPVDSEQLR+DCDALMA C+QEARERWNFDF+TETPLEG+F WE
Sbjct: 6 DVRPVPHRSKVCRCLFGPVDSEQLRRDCDALMAGCLQEARERWNFDFVTETPLEGNFVWE 65
Query: 297 RVRGLGLPKIYLPTGPRGTWDDLGGGKRPSTSPALLQGTSQEDHVDLLLSCTLVXXXXXX 476
RVR LGLPK+YL G R DDLGG KRPSTS ALLQG + EDHV L LSCTLV
Sbjct: 66 RVRSLGLPKVYLSPGSRSR-DDLGGDKRPSTSSALLQGPAPEDHVALSLSCTLV---SER 121
Query: 477 XXXXXXXXXXXXXRKRRQTSMTDFYHSKRRLIFSKRKP 590
RKRRQTS+TDFYHSKRRL+F KRKP
Sbjct: 122 PEDSPGGPGTSQGRKRRQTSLTDFYHSKRRLVFCKRKP 159
>ref|NP_031695.1| cyclin-dependent kinase inhibitor 1 [Mus musculus].
Length = 159
Score = 211 bits (537), Expect = 1e-54
Identities = 107/158 (67%), Positives = 116/158 (73%)
Frame = +3
Query: 117 DAHQIPRSSKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNFDFITETPLEGDFAWE 296
D +P SK CR LFGPVDSEQLR+DCDALMA C+QEARERWNFDF+TETPLEG+F WE
Sbjct: 6 DVRPVPHRSKVCRCLFGPVDSEQLRRDCDALMAGCLQEARERWNFDFVTETPLEGNFVWE 65
Query: 297 RVRGLGLPKIYLPTGPRGTWDDLGGGKRPSTSPALLQGTSQEDHVDLLLSCTLVXXXXXX 476
RVR LGLPK+YL G R DDLGG KRPSTS ALLQG + EDHV L LSCTLV
Sbjct: 66 RVRSLGLPKVYLSPGSRSR-DDLGGDKRPSTSSALLQGPAPEDHVALSLSCTLV---SER 121
Query: 477 XXXXXXXXXXXXXRKRRQTSMTDFYHSKRRLIFSKRKP 590
RKRRQTS+TDFYHSKRRL+F KRKP
Sbjct: 122 PEDSPGGPGTSQGRKRRQTSLTDFYHSKRRLVFCKRKP 159
>ref|NP_034005.2| cyclin-dependent kinase inhibitor 1B [Mus musculus].
Length = 197
Score = 62.8 bits (151), Expect = 8e-10
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +3
Query: 78 LRRATGTMSESTRDAHQI--PRSSKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNF 251
+R + G+ S DA Q P+ S ACR LFGPV+ E+L +D + + ++ +WNF
Sbjct: 4 VRVSNGSPSLERMDARQAEHPKPS-ACRNLFGPVNHEELTRDLEKHCRDMEEASQRKWNF 62
Query: 252 DFITETPLEGDFAWERVRGLGLPKIY 329
DF PLEG + W+ V LP+ Y
Sbjct: 63 DFQNHKPLEGRYEWQEVERGSLPEFY 88
>ref|NP_001155096.1| cyclin-dependent kinase inhibitor 1C isoform 1 [Mus musculus].
Length = 348
Score = 53.1 bits (126), Expect = 6e-07
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +3
Query: 78 LRRATGTMSESTRDAHQIPRSSKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNFDF 257
LR T ++ D + S ACR LFGPVD E+L ++ +A E + RW+F+F
Sbjct: 8 LRSRTAMERLASSDTFPVIARSSACRSLFGPVDHEELGRELRMRLAELNAEDQNRWDFNF 67
Query: 258 ITETPLEGD--FAWERVRGLGLPKIYLPT 338
+ PL G W V +P Y T
Sbjct: 68 QQDVPLRGPGRLQWMEVDSESVPAFYRET 96
>ref|NP_034006.3| cyclin-dependent kinase inhibitor 1C isoform 2 [Mus musculus].
Length = 335
Score = 51.2 bits (121), Expect = 2e-06
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +3
Query: 108 STRDAHQIPRSSKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNFDFITETPLEGD- 284
++ D + S ACR LFGPVD E+L ++ +A E + RW+F+F + PL G
Sbjct: 5 ASSDTFPVIARSSACRSLFGPVDHEELGRELRMRLAELNAEDQNRWDFNFQQDVPLRGPG 64
Query: 285 -FAWERVRGLGLPKIYLPT 338
W V +P Y T
Sbjct: 65 RLQWMEVDSESVPAFYRET 83
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 62,311,827
Number of extensions: 1873496
Number of successful extensions: 8453
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8307
Number of HSP's successfully gapped: 5
Length of query: 574
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 467
Effective length of database: 12,403,707
Effective search space: 5792531169
Effective search space used: 5792531169
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003365
(1722 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361153.1| PREDICTED: cyclin-dependent kinase inhibitor... 295 5e-80
Alignment gi|XP_001929593.1| PREDICTED: cyclin-dependent kinase inhibitor... 295 5e-80
Alignment gi|NP_999481.1| cyclin-dependent kinase inhibitor 1B [Sus scrof... 65 1e-10
>ref|XP_003361153.1| PREDICTED: cyclin-dependent kinase inhibitor 1-like [Sus scrofa].
Length = 164
Score = 295 bits (755), Expect = 5e-80
Identities = 145/164 (88%), Positives = 145/164 (88%)
Frame = +3
Query: 99 MSESTRDAHQIPRSSKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNFDFITETPLE 278
MSESTRDAHQIPRSSKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNFDFITETPLE
Sbjct: 1 MSESTRDAHQIPRSSKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNFDFITETPLE 60
Query: 279 GDFAWERVRGLGLPKIYLPTGPRGTWDDLGGGKRPSTSPALLQGTSQEDHVDLLLSCTLV 458
GDFAWERVRGLGLPKIYLPTGPRGTWDDLGGGKRPSTSPALLQGTSQEDHVDLLLSCTLV
Sbjct: 61 GDFAWERVRGLGLPKIYLPTGPRGTWDDLGGGKRPSTSPALLQGTSQEDHVDLLLSCTLV 120
Query: 459 XXXXXXXXXXXXXXXXXXXRKRRQTSMTDFYHSKRRLIFSKRKP 590
RKRRQTSMTDFYHSKRRLIFSKRKP
Sbjct: 121 PHSPERPEGSPGGPDTSQGRKRRQTSMTDFYHSKRRLIFSKRKP 164
>ref|XP_001929593.1| PREDICTED: cyclin-dependent kinase inhibitor 1 [Sus scrofa].
Length = 164
Score = 295 bits (755), Expect = 5e-80
Identities = 145/164 (88%), Positives = 145/164 (88%)
Frame = +3
Query: 99 MSESTRDAHQIPRSSKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNFDFITETPLE 278
MSESTRDAHQIPRSSKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNFDFITETPLE
Sbjct: 1 MSESTRDAHQIPRSSKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNFDFITETPLE 60
Query: 279 GDFAWERVRGLGLPKIYLPTGPRGTWDDLGGGKRPSTSPALLQGTSQEDHVDLLLSCTLV 458
GDFAWERVRGLGLPKIYLPTGPRGTWDDLGGGKRPSTSPALLQGTSQEDHVDLLLSCTLV
Sbjct: 61 GDFAWERVRGLGLPKIYLPTGPRGTWDDLGGGKRPSTSPALLQGTSQEDHVDLLLSCTLV 120
Query: 459 XXXXXXXXXXXXXXXXXXXRKRRQTSMTDFYHSKRRLIFSKRKP 590
RKRRQTSMTDFYHSKRRLIFSKRKP
Sbjct: 121 PHSPERPEGSPGGPDTSQGRKRRQTSMTDFYHSKRRLIFSKRKP 164
>ref|NP_999481.1| cyclin-dependent kinase inhibitor 1B [Sus scrofa].
Length = 198
Score = 65.1 bits (157), Expect = 1e-10
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Frame = +3
Query: 78 LRRATGTMSESTRDAHQI--PRSSKACRRLFGPVDSEQLRQDCDALMASCVQEARERWNF 251
+R + G+ S DA Q P+ S ACR LFGPV+ E+L +D + + ++ +WNF
Sbjct: 4 VRVSNGSPSLERMDARQAEYPKPS-ACRNLFGPVNHEELTRDLEKHCRDMEEASQRKWNF 62
Query: 252 DFITETPLEGDFAWERVRGLGLPKIYL--PTGPRG 350
DF PLEG + W+ V LP+ Y P P+G
Sbjct: 63 DFQNHKPLEGKYEWQEVEKGSLPEFYYRPPRPPKG 97
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 47,200,717
Number of extensions: 1487878
Number of successful extensions: 7512
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7378
Number of HSP's successfully gapped: 3
Length of query: 574
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 470
Effective length of database: 8,754,644
Effective search space: 4114682680
Effective search space used: 4114682680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003365
(1722 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 2278 0.0
gb|GL893630.2| Sus scrofa unplaced genomic scaffold ChrUScaf1515 1467 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 2278 bits (1149), Expect = 0.0
Identities = 1172/1182 (99%)
Strand = Plus / Plus
Query: 541 cagatttctaccactccaaacgccggctgatcttctccaagaggaagccctaactaggct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37265605 cagatttctaccactccaaacgccggctgatcttctccaagaggaagccctaactaggct 37265664
Query: 601 gctggaagccttgtcctgctggaaacaaggggacannnnnnnaggcctcttctacatctt 660
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 37265665 gctggaagccttgtcctgctggaaacaaggggacacccccccaggcctcttctacatctt 37265724
Query: 661 ttgccttaggcctttagtttgtgtgtcttaattattatttgtgttttaatttaaactcct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37265725 ttgccttaggcctttagtttgtgtgtcttaattattatttgtgttttaatttaaactcct 37265784
Query: 721 cctcatgtacatacctggcttgccaccccttccccataccccgagcttctggcattagaa 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37265785 cctcatgtacatacctggcttgccaccccttccccataccccgagcttctggcattagaa 37265844
Query: 781 ttatttaaaacgtttaggtagcagaaaaataggcttattagagtgctaggtattttttat 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37265845 ttatttaaaacgtttaggtagcagaaaaataggcttattagagtgctaggtattttttat 37265904
Query: 841 tatgtgaactattatttaagctctcctcatccctttctctccatttcctctctccctgag 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37265905 tatgtgaactattatttaagctctcctcatccctttctctccatttcctctctccctgag 37265964
Query: 901 ataagatgaggcaagcacaaccctcaaccactgggtggtacttactagaggggcctggcc 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37265965 ataagatgaggcaagcacaaccctcaaccactgggtggtacttactagaggggcctggcc 37266024
Query: 961 ccttggctcacagtttcatgggtgttaggaaattccgcccctttcctgcattctcagacc 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37266025 ccttggctcacagtttcatgggtgttaggaaattccgcccctttcctgcattctcagacc 37266084
Query: 1021 tgcattccttccgattgagaagttaacagatagcactttgaagggggcccaacagagttg 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37266085 tgcattccttccgattgagaagttaacagatagcactttgaagggggcccaacagagttg 37266144
Query: 1081 gggaggcattatcacaactttgaggtccccttgcctcctctaaggttgggcagggtgacc 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37266145 gggaggcattatcacaactttgaggtccccttgcctcctctaaggttgggcagggtgacc 37266204
Query: 1141 ttgaagtgggcacagcctggagcagggctggggacttgacaccctcctggcccttgacac 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37266205 ttgaagtgggcacagcctggagcagggctggggacttgacaccctcctggcccttgacac 37266264
Query: 1201 ccagcccctctgtccagtgaaagtagggccctgtagcaaaccaccccacccccctccacc 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37266265 ccagcccctctgtccagtgaaagtagggccctgtagcaaaccaccccacccccctccacc 37266324
Query: 1261 cacaggggagccagcctcactgattggcttcccctgcacttttctgggagcccagaggcc 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37266325 cacaggggagccagcctcactgattggcttcccctgcacttttctgggagcccagaggcc 37266384
Query: 1321 cctcttttctagccgggctctccatccctctctgctcctctacccttctccatgtcattt 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37266385 cctcttttctagccgggctctccatccctctctgctcctctacccttctccatgtcattt 37266444
Query: 1381 ccccttaacaccttctcagccctgagtggcagctccagggcgcctctgcccccaactcag 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37266445 ccccttaacaccttctcagccctgagtggcagctccagggcgcctctgcccccaactcag 37266504
Query: 1441 aggactgaacggagaagggggcatgctagacatagggttccccagttctacctcaggcag 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37266505 aggactgaacggagaagggggcatgctagacatagggttccccagttctacctcaggcag 37266564
Query: 1501 ctcgagcagagaccacccccacctcttagctcttggggtgggggtcctggggagggtctg 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37266565 ctcgagcagagaccacccccacctcttagctcttggggtgggggtcctggggagggtctg 37266624
Query: 1561 acaggcctccttgaatggggatctctctgcatcatgagaatggggatgaggagcagacat 1620
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 37266625 acaggcctccttgaatggggatctccctgcatcaggagaatggggatgaggagcagacat 37266684
Query: 1621 ttccaggagggaaagtttgacaccaatcaacgcctgtaactactccctcaaagacttttt 1680
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 37266685 ttccaggagggaaagtttgacaccaatcaacgcctggaactactccctcaaagacttttt 37266744
Query: 1681 ccattccctccacccctcccccatttcattgcactttgaaca 1722
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37266745 ccattccctccacccctcccccatttcattgcactttgaaca 37266786
Score = 900 bits (454), Expect = 0.0
Identities = 457/458 (99%)
Strand = Plus / Plus
Query: 86 agccacaggcaccatgtcagagtcgaccagggatgcacatcagatcccgcgcagcagcaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37262827 agccacaggcaccatgtcagagtcgaccagggatgcacatcagatcccgcgcagcagcaa 37262886
Query: 146 ggcctgccgccgcctctttggcccagtggacagtgagcagctgcgccaggactgcgatgc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37262887 ggcctgccgccgcctctttggcccagtggacagtgagcagctgcgccaggactgcgatgc 37262946
Query: 206 actgatggccagctgcgtgcaagaggcccgagagcgatggaacttcgacttcatcactga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37262947 actgatggccagctgcgtgcaagaggcccgagagcgatggaacttcgacttcatcactga 37263006
Query: 266 gacccccctggagggtgacttcgcctgggaacgtgtgcgaggccttggtctgcccaagat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37263007 gacccccctggagggtgacttcgcctgggaacgtgtgcgaggccttggtctgcccaagat 37263066
Query: 326 ctacctgcccacagggccccgggggacctgggatgacctgggagggggcaagcggccaag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37263067 ctacctgcccacagggccccgggggacctgggatgacctgggagggggcaagcggccaag 37263126
Query: 386 cacctcgcctgcccttctgcaggggacgtctcaggaggaccatgtggacctgttgctgtc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37263127 cacctcgcctgcccttctgcaggggacgtctcaggaggaccatgtggacctgttgctgtc 37263186
Query: 446 ctgcacccttgtgcctcactcccctgagcggcctgaggggtccccaggagggcctggcac 505
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 37263187 ctgcacccttgtgcctcactcccctgagcggcctgaggggtccccaggagggcctgacac 37263246
Query: 506 ctcccagggcaggaaacggcggcagaccagcatgacag 543
||||||||||||||||||||||||||||||||||||||
Sbjct: 37263247 ctcccagggcaggaaacggcggcagaccagcatgacag 37263284
Score = 172 bits (87), Expect = 4e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 agctgaggtgtgagcagctgccagagtcggtagttgggagatccggagctgggcgcggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37258073 agctgaggtgtgagcagctgccagagtcggtagttgggagatccggagctgggcgcggat 37258132
Query: 61 tctcggagacaccgaccctcagaagag 87
|||||||||||||||||||||||||||
Sbjct: 37258133 tctcggagacaccgaccctcagaagag 37258159
>gb|GL893630.2| Sus scrofa unplaced genomic scaffold ChrUScaf1515
Length = 46245
Score = 1467 bits (740), Expect = 0.0
Identities = 752/756 (99%)
Strand = Plus / Plus
Query: 967 ctcacagtttcatgggtgttaggaaattccgcccctttcctgcattctcagacctgcatt 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44950 ctcacagtttcatgggtgttaggaaattccgcccctttcctgcattctcagacctgcatt 45009
Query: 1027 ccttccgattgagaagttaacagatagcactttgaagggggcccaacagagttggggagg 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45010 ccttccgattgagaagttaacagatagcactttgaagggggcccaacagagttggggagg 45069
Query: 1087 cattatcacaactttgaggtccccttgcctcctctaaggttgggcagggtgaccttgaag 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45070 cattatcacaactttgaggtccccttgcctcctctaaggttgggcagggtgaccttgaag 45129
Query: 1147 tgggcacagcctggagcagggctggggacttgacaccctcctggcccttgacacccagcc 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45130 tgggcacagcctggagcagggctggggacttgacaccctcctggcccttgacacccagcc 45189
Query: 1207 cctctgtccagtgaaagtagggccctgtagcaaaccaccccacccccctccacccacagg 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45190 cctctgtccagtgaaagtagggccctgtagcaaaccaccccacccccctccacccacagg 45249
Query: 1267 ggagccagcctcactgattggcttcccctgcacttttctgggagcccagaggcccctctt 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45250 ggagccagcctcactgattggcttcccctgcacttttctgggagcccagaggcccctctt 45309
Query: 1327 ttctagccgggctctccatccctctctgctcctctacccttctccatgtcatttcccctt 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45310 ttctagccgggctctccatccctctctgctcctctacccttctccatgtcatttcccctt 45369
Query: 1387 aacaccttctcagccctgagtggcagctccagggcgcctctgcccccaactcagaggact 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45370 aacaccttctcagccctgagtggcagctccagggcgcctctgcccccaactcagaggact 45429
Query: 1447 gaacggagaagggggcatgctagacatagggttccccagttctacctcaggcagctcgag 1506
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 45430 gaacggagaagggggcatgctagacatagggttccccaggtctacctcaggcagctcgag 45489
Query: 1507 cagagaccacccccacctcttagctcttggggtgggggtcctggggagggtctgacaggc 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45490 cagagaccacccccacctcttagctcttggggtgggggtcctggggagggtctgacaggc 45549
Query: 1567 ctccttgaatggggatctctctgcatcatgagaatggggatgaggagcagacatttccag 1626
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 45550 ctccttgaatggggatctccctgcatcaggagaatggggatgaggagcagacatttccag 45609
Query: 1627 gagggaaagtttgacaccaatcaacgcctgtaactactccctcaaagactttttccattc 1686
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 45610 gagggaaagtttgacaccaatcaacgcctggaactactccctcaaagactttttccattc 45669
Query: 1687 cctccacccctcccccatttcattgcactttgaaca 1722
||||||||||||||||||||||||||||||||||||
Sbjct: 45670 cctccacccctcccccatttcattgcactttgaaca 45705
Score = 900 bits (454), Expect = 0.0
Identities = 457/458 (99%)
Strand = Plus / Plus
Query: 86 agccacaggcaccatgtcagagtcgaccagggatgcacatcagatcccgcgcagcagcaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42062 agccacaggcaccatgtcagagtcgaccagggatgcacatcagatcccgcgcagcagcaa 42121
Query: 146 ggcctgccgccgcctctttggcccagtggacagtgagcagctgcgccaggactgcgatgc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42122 ggcctgccgccgcctctttggcccagtggacagtgagcagctgcgccaggactgcgatgc 42181
Query: 206 actgatggccagctgcgtgcaagaggcccgagagcgatggaacttcgacttcatcactga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42182 actgatggccagctgcgtgcaagaggcccgagagcgatggaacttcgacttcatcactga 42241
Query: 266 gacccccctggagggtgacttcgcctgggaacgtgtgcgaggccttggtctgcccaagat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42242 gacccccctggagggtgacttcgcctgggaacgtgtgcgaggccttggtctgcccaagat 42301
Query: 326 ctacctgcccacagggccccgggggacctgggatgacctgggagggggcaagcggccaag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42302 ctacctgcccacagggccccgggggacctgggatgacctgggagggggcaagcggccaag 42361
Query: 386 cacctcgcctgcccttctgcaggggacgtctcaggaggaccatgtggacctgttgctgtc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42362 cacctcgcctgcccttctgcaggggacgtctcaggaggaccatgtggacctgttgctgtc 42421
Query: 446 ctgcacccttgtgcctcactcccctgagcggcctgaggggtccccaggagggcctggcac 505
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 42422 ctgcacccttgtgcctcactcccctgagcggcctgaggggtccccaggagggcctgacac 42481
Query: 506 ctcccagggcaggaaacggcggcagaccagcatgacag 543
||||||||||||||||||||||||||||||||||||||
Sbjct: 42482 ctcccagggcaggaaacggcggcagaccagcatgacag 42519
Score = 755 bits (381), Expect = 0.0
Identities = 395/402 (98%)
Strand = Plus / Plus
Query: 541 cagatttctaccactccaaacgccggctgatcttctccaagaggaagccctaactaggct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44448 cagatttctaccactccaaacgccggctgatcttctccaagaggaagccctaactaggct 44507
Query: 601 gctggaagccttgtcctgctggaaacaaggggacannnnnnnaggcctcttctacatctt 660
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 44508 gctggaagccttgtcctgctggaaacaaggggacacccccccaggcctcttctacatctt 44567
Query: 661 ttgccttaggcctttagtttgtgtgtcttaattattatttgtgttttaatttaaactcct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44568 ttgccttaggcctttagtttgtgtgtcttaattattatttgtgttttaatttaaactcct 44627
Query: 721 cctcatgtacatacctggcttgccaccccttccccataccccgagcttctggcattagaa 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44628 cctcatgtacatacctggcttgccaccccttccccataccccgagcttctggcattagaa 44687
Query: 781 ttatttaaaacgtttaggtagcagaaaaataggcttattagagtgctaggtattttttat 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44688 ttatttaaaacgtttaggtagcagaaaaataggcttattagagtgctaggtattttttat 44747
Query: 841 tatgtgaactattatttaagctctcctcatccctttctctccatttcctctctccctgag 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44748 tatgtgaactattatttaagctctcctcatccctttctctccatttcctctctccctgag 44807
Query: 901 ataagatgaggcaagcacaaccctcaaccactgggtggtact 942
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44808 ataagatgaggcaagcacaaccctcaaccactgggtggtact 44849
Score = 172 bits (87), Expect = 4e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 agctgaggtgtgagcagctgccagagtcggtagttgggagatccggagctgggcgcggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39294 agctgaggtgtgagcagctgccagagtcggtagttgggagatccggagctgggcgcggat 39353
Query: 61 tctcggagacaccgaccctcagaagag 87
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Sbjct: 39354 tctcggagacaccgaccctcagaagag 39380
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 53,597,045
Number of extensions: 560
Number of successful extensions: 560
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 558
Number of HSP's successfully gapped: 7
Length of query: 1722
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1700
Effective length of database: 2,808,408,574
Effective search space: 4774294575800
Effective search space used: 4774294575800
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)