Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003366
(1023 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029909.1| actin-related protein 2/3 complex subunit 5-... 274 1e-73
Alignment gi|NP_001030524.1| actin-related protein 2/3 complex subunit 5 ... 201 9e-52
Alignment gi|XP_002691650.1| PREDICTED: hypothetical protein [Bos taurus]. 106 4e-23
Alignment gi|XP_002700919.1| PREDICTED: hypothetical protein [Bos taurus]. 106 4e-23
>ref|NP_001029909.1| actin-related protein 2/3 complex subunit 5-like protein [Bos
taurus].
Length = 153
Score = 274 bits (700), Expect = 1e-73
Identities = 141/150 (94%), Positives = 141/150 (94%)
Frame = +1
Query: 151 MARNTLSSRFRRVDIDEFDENKFVDEQXXXXXXXXXPGPDPSEVDGLLRQGDMLRAFHAA 330
MARNTLSSRFRRVDIDEFDENKFVDEQ PGPDPSEVDGLLRQGDMLRAFHAA
Sbjct: 1 MARNTLSSRFRRVDIDEFDENKFVDEQEEAAAAAGEPGPDPSEVDGLLRQGDMLRAFHAA 60
Query: 331 LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPT 510
LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPT
Sbjct: 61 LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPT 120
Query: 511 ENSSAVLLQWHEKALAVGGLGSIIRVLTAR 600
ENSSAVLLQWHEKALAVGGLGSIIRVLTAR
Sbjct: 121 ENSSAVLLQWHEKALAVGGLGSIIRVLTAR 150
>ref|NP_001030524.1| actin-related protein 2/3 complex subunit 5 [Bos taurus].
Length = 151
Score = 201 bits (511), Expect = 9e-52
Identities = 101/151 (66%), Positives = 125/151 (82%), Gaps = 1/151 (0%)
Frame = +1
Query: 151 MARNTLSS-RFRRVDIDEFDENKFVDEQXXXXXXXXXPGPDPSEVDGLLRQGDMLRAFHA 327
M++NT+SS RFR+VD+ E+DENKFVDE+ GPD EVD LRQG+M A A
Sbjct: 1 MSKNTVSSARFRKVDVGEYDENKFVDEEDGGDGQA---GPDEGEVDSCLRQGNMTAALQA 57
Query: 328 ALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKP 507
AL+N P+NTK+QAVK+RA +VLKVL +FK+++IE+AVQSLD+NG+DLLMKYIYKGFE P
Sbjct: 58 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 117
Query: 508 TENSSAVLLQWHEKALAVGGLGSIIRVLTAR 600
++NSSAVLLQWHEKALA GG+GSI+RVLTAR
Sbjct: 118 SDNSSAVLLQWHEKALAAGGVGSIVRVLTAR 148
>ref|XP_002691650.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 174
Score = 106 bits (264), Expect = 4e-23
Identities = 54/77 (70%), Positives = 58/77 (75%)
Frame = -1
Query: 318 CPKHVPLPQEPIHFARVRAWXXXXXXXXXXLVHEFVLIKFIDVHSTEARGQCVPGHGGGS 139
CP + LPQEP+H ARVRAW LVHEFVLIKFIDVH TEARGQ VPGHGG S
Sbjct: 5 CP--LILPQEPVHLARVRAWLARRRRRLLLLVHEFVLIKFIDVHPTEARGQRVPGHGGDS 62
Query: 138 APAQPAPLRGRPPLHSA 88
APA+PA LR RPPL+SA
Sbjct: 63 APAEPAMLRSRPPLYSA 79
>ref|XP_002700919.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 174
Score = 106 bits (264), Expect = 4e-23
Identities = 54/77 (70%), Positives = 58/77 (75%)
Frame = -1
Query: 318 CPKHVPLPQEPIHFARVRAWXXXXXXXXXXLVHEFVLIKFIDVHSTEARGQCVPGHGGGS 139
CP + LPQEP+H ARVRAW LVHEFVLIKFIDVH TEARGQ VPGHGG S
Sbjct: 5 CP--LILPQEPVHLARVRAWLARRRRRLLLLVHEFVLIKFIDVHPTEARGQRVPGHGGDS 62
Query: 138 APAQPAPLRGRPPLHSA 88
APA+PA LR RPPL+SA
Sbjct: 63 APAEPAMLRSRPPLYSA 79
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,102,331
Number of extensions: 912766
Number of successful extensions: 3623
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3615
Number of HSP's successfully gapped: 4
Length of query: 341
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,273,310
Effective search space: 3397047780
Effective search space used: 3397047780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003366
(1023 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851346.1| PREDICTED: similar to actin related protein 2/3... 272 3e-73
Alignment gi|XP_863555.1| PREDICTED: similar to actin related protein 2/3... 262 4e-70
Alignment gi|XP_863531.1| PREDICTED: similar to actin related protein 2/3... 261 6e-70
Alignment gi|XP_537159.2| PREDICTED: similar to Actin-related protein 2/3... 195 5e-50
>ref|XP_851346.1| PREDICTED: similar to actin related protein 2/3 complex, subunit
5-like isoform 1 [Canis familiaris].
Length = 153
Score = 272 bits (696), Expect = 3e-73
Identities = 140/150 (93%), Positives = 140/150 (93%)
Frame = +1
Query: 151 MARNTLSSRFRRVDIDEFDENKFVDEQXXXXXXXXXPGPDPSEVDGLLRQGDMLRAFHAA 330
MARNTLSSRFRRVDIDEFDENKFVDEQ PGPDP EVDGLLRQGDMLRAFHAA
Sbjct: 1 MARNTLSSRFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPGEVDGLLRQGDMLRAFHAA 60
Query: 331 LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPT 510
LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPT
Sbjct: 61 LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPT 120
Query: 511 ENSSAVLLQWHEKALAVGGLGSIIRVLTAR 600
ENSSAVLLQWHEKALAVGGLGSIIRVLTAR
Sbjct: 121 ENSSAVLLQWHEKALAVGGLGSIIRVLTAR 150
>ref|XP_863555.1| PREDICTED: similar to actin related protein 2/3 complex, subunit
5-like isoform 3 [Canis familiaris].
Length = 169
Score = 262 bits (669), Expect = 4e-70
Identities = 140/166 (84%), Positives = 140/166 (84%), Gaps = 16/166 (9%)
Frame = +1
Query: 151 MARNTLSSRFRRVDIDEFDENKFVDEQXXXXXXXXXPGPDPSEVDGLLRQ---------- 300
MARNTLSSRFRRVDIDEFDENKFVDEQ PGPDP EVDGLLRQ
Sbjct: 1 MARNTLSSRFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPGEVDGLLRQYPYPAQRPGW 60
Query: 301 ------GDMLRAFHAALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNG 462
GDMLRAFHAALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNG
Sbjct: 61 REEEGTGDMLRAFHAALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNG 120
Query: 463 IDLLMKYIYKGFEKPTENSSAVLLQWHEKALAVGGLGSIIRVLTAR 600
IDLLMKYIYKGFEKPTENSSAVLLQWHEKALAVGGLGSIIRVLTAR
Sbjct: 121 IDLLMKYIYKGFEKPTENSSAVLLQWHEKALAVGGLGSIIRVLTAR 166
>ref|XP_863531.1| PREDICTED: similar to actin related protein 2/3 complex, subunit
5-like isoform 2 [Canis familiaris].
Length = 162
Score = 261 bits (668), Expect = 6e-70
Identities = 139/159 (87%), Positives = 139/159 (87%), Gaps = 9/159 (5%)
Frame = +1
Query: 151 MARNTLSSRFRRVDIDEFDENKFVDEQXXXXXXXXXPGPDPSEVDGLLRQ---------G 303
MARNTLSSRFRRVDIDEFDENKFVDEQ PGPDP EVDGLLRQ
Sbjct: 1 MARNTLSSRFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPGEVDGLLRQYPYPAQRPGW 60
Query: 304 DMLRAFHAALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKY 483
DMLRAFHAALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKY
Sbjct: 61 DMLRAFHAALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKY 120
Query: 484 IYKGFEKPTENSSAVLLQWHEKALAVGGLGSIIRVLTAR 600
IYKGFEKPTENSSAVLLQWHEKALAVGGLGSIIRVLTAR
Sbjct: 121 IYKGFEKPTENSSAVLLQWHEKALAVGGLGSIIRVLTAR 159
>ref|XP_537159.2| PREDICTED: similar to Actin-related protein 2/3 complex subunit 5
(ARP2/3 complex 16 kDa subunit) (p16-ARC) [Canis
familiaris].
Length = 154
Score = 195 bits (496), Expect = 5e-50
Identities = 101/154 (65%), Positives = 125/154 (81%), Gaps = 4/154 (2%)
Frame = +1
Query: 151 MARNTLSS-RFRRVDIDEFDENKFVDEQXXXXXXXXXPGPDPSEVDGLLRQ---GDMLRA 318
M++NT+SS RFR+VD+DE+DENKFVDE+ GPD EVD LRQ +M A
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQA---GPDEGEVDSCLRQYPWRNMTAA 57
Query: 319 FHAALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGF 498
AAL+N P+NTK+QAVK+RA +VLKVL +FK+++IE+AVQSLD+NG+DLLMKYIYKGF
Sbjct: 58 LQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGF 117
Query: 499 EKPTENSSAVLLQWHEKALAVGGLGSIIRVLTAR 600
E P++NSSAVLLQWHEKALA GG+GSI+RVLTAR
Sbjct: 118 ESPSDNSSAVLLQWHEKALAAGGVGSIVRVLTAR 151
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,605,855
Number of extensions: 935977
Number of successful extensions: 3737
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3727
Number of HSP's successfully gapped: 4
Length of query: 341
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 238
Effective length of database: 15,440,896
Effective search space: 3674933248
Effective search space used: 3674933248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003366
(1023 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_112240.1| actin-related protein 2/3 complex subunit 5-lik... 273 1e-73
Alignment gi|NP_005708.1| actin-related protein 2/3 complex subunit 5 [Ho... 202 3e-52
>ref|NP_112240.1| actin-related protein 2/3 complex subunit 5-like protein [Homo
sapiens].
Length = 153
Score = 273 bits (699), Expect = 1e-73
Identities = 140/150 (93%), Positives = 141/150 (94%)
Frame = +1
Query: 151 MARNTLSSRFRRVDIDEFDENKFVDEQXXXXXXXXXPGPDPSEVDGLLRQGDMLRAFHAA 330
MARNTLSSRFRRVDIDEFDENKFVDEQ PGPDPSEVDGLLRQGDMLRAFHAA
Sbjct: 1 MARNTLSSRFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHAA 60
Query: 331 LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPT 510
LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNG+DLLMKYIYKGFEKPT
Sbjct: 61 LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPT 120
Query: 511 ENSSAVLLQWHEKALAVGGLGSIIRVLTAR 600
ENSSAVLLQWHEKALAVGGLGSIIRVLTAR
Sbjct: 121 ENSSAVLLQWHEKALAVGGLGSIIRVLTAR 150
>ref|NP_005708.1| actin-related protein 2/3 complex subunit 5 [Homo sapiens].
Length = 151
Score = 202 bits (515), Expect = 3e-52
Identities = 101/151 (66%), Positives = 126/151 (83%), Gaps = 1/151 (0%)
Frame = +1
Query: 151 MARNTLSS-RFRRVDIDEFDENKFVDEQXXXXXXXXXPGPDPSEVDGLLRQGDMLRAFHA 327
M++NT+SS RFR+VD+DE+DENKFVDE+ GPD EVD LRQG+M A A
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQA---GPDEGEVDSCLRQGNMTAALQA 57
Query: 328 ALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKP 507
AL+N P+NTK+QAVK+RA +VLKVL +FK+++IE+AVQSLD+NG+DLLMKYIYKGFE P
Sbjct: 58 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 117
Query: 508 TENSSAVLLQWHEKALAVGGLGSIIRVLTAR 600
++NSSA+LLQWHEKALA GG+GSI+RVLTAR
Sbjct: 118 SDNSSAMLLQWHEKALAAGGVGSIVRVLTAR 148
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,978,047
Number of extensions: 919263
Number of successful extensions: 3798
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3780
Number of HSP's successfully gapped: 2
Length of query: 341
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,901,872
Effective search space: 3546645536
Effective search space used: 3546645536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003366
(1023 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083085.1| actin-related protein 2/3 complex subunit 5-lik... 270 2e-72
Alignment gi|NP_080645.2| actin-related protein 2/3 complex subunit 5 [Mu... 204 1e-52
>ref|NP_083085.1| actin-related protein 2/3 complex subunit 5-like protein [Mus
musculus].
Length = 153
Score = 270 bits (689), Expect = 2e-72
Identities = 138/150 (92%), Positives = 139/150 (92%)
Frame = +1
Query: 151 MARNTLSSRFRRVDIDEFDENKFVDEQXXXXXXXXXPGPDPSEVDGLLRQGDMLRAFHAA 330
MARNTLSSRFRRVDIDEFDENKFVDE PGPDP EVDGLLRQGDMLRAFHAA
Sbjct: 1 MARNTLSSRFRRVDIDEFDENKFVDEHEEAAAAAGEPGPDPCEVDGLLRQGDMLRAFHAA 60
Query: 331 LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPT 510
LRNSP+NTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPT
Sbjct: 61 LRNSPINTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPT 120
Query: 511 ENSSAVLLQWHEKALAVGGLGSIIRVLTAR 600
ENSSAVLLQWHEKALAVGGLGSIIRVLTAR
Sbjct: 121 ENSSAVLLQWHEKALAVGGLGSIIRVLTAR 150
>ref|NP_080645.2| actin-related protein 2/3 complex subunit 5 [Mus musculus].
Length = 151
Score = 204 bits (518), Expect = 1e-52
Identities = 102/151 (67%), Positives = 126/151 (83%), Gaps = 1/151 (0%)
Frame = +1
Query: 151 MARNTLSS-RFRRVDIDEFDENKFVDEQXXXXXXXXXPGPDPSEVDGLLRQGDMLRAFHA 327
M++NT+SS RFR+VD+DE+DENKFVDE+ GPD EVD LRQG+M A A
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQA---GPDEGEVDSCLRQGNMTAALQA 57
Query: 328 ALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKP 507
AL+N P+NTK+QAVK+RA +VLKVL +FK+++IE+AVQSLD+NG+DLLMKYIYKGFE P
Sbjct: 58 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 117
Query: 508 TENSSAVLLQWHEKALAVGGLGSIIRVLTAR 600
++NSSAVLLQWHEKALA GG+GSI+RVLTAR
Sbjct: 118 SDNSSAVLLQWHEKALAAGGVGSIVRVLTAR 148
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,410,818
Number of extensions: 780759
Number of successful extensions: 2829
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2820
Number of HSP's successfully gapped: 2
Length of query: 341
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 239
Effective length of database: 12,553,887
Effective search space: 3000378993
Effective search space used: 3000378993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003366
(1023 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353710.1| PREDICTED: actin-related protein 2/3 complex... 274 7e-74
Alignment gi|NP_001172063.1| actin related protein 2/3 complex subunit 5-... 274 7e-74
Alignment gi|NP_001127829.1| actin-related protein 2/3 complex subunit 5 ... 202 2e-52
>ref|XP_003353710.1| PREDICTED: actin-related protein 2/3 complex subunit 5-like
protein-like [Sus scrofa].
Length = 153
Score = 274 bits (700), Expect = 7e-74
Identities = 141/150 (94%), Positives = 141/150 (94%)
Frame = +1
Query: 151 MARNTLSSRFRRVDIDEFDENKFVDEQXXXXXXXXXPGPDPSEVDGLLRQGDMLRAFHAA 330
MARNTLSSRFRRVDIDEFDENKFVDEQ PGPDPSEVDGLLRQGDMLRAFHAA
Sbjct: 1 MARNTLSSRFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHAA 60
Query: 331 LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPT 510
LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPT
Sbjct: 61 LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPT 120
Query: 511 ENSSAVLLQWHEKALAVGGLGSIIRVLTAR 600
ENSSAVLLQWHEKALAVGGLGSIIRVLTAR
Sbjct: 121 ENSSAVLLQWHEKALAVGGLGSIIRVLTAR 150
>ref|NP_001172063.1| actin related protein 2/3 complex subunit 5-like protein [Sus
scrofa].
Length = 153
Score = 274 bits (700), Expect = 7e-74
Identities = 141/150 (94%), Positives = 141/150 (94%)
Frame = +1
Query: 151 MARNTLSSRFRRVDIDEFDENKFVDEQXXXXXXXXXPGPDPSEVDGLLRQGDMLRAFHAA 330
MARNTLSSRFRRVDIDEFDENKFVDEQ PGPDPSEVDGLLRQGDMLRAFHAA
Sbjct: 1 MARNTLSSRFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHAA 60
Query: 331 LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPT 510
LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPT
Sbjct: 61 LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPT 120
Query: 511 ENSSAVLLQWHEKALAVGGLGSIIRVLTAR 600
ENSSAVLLQWHEKALAVGGLGSIIRVLTAR
Sbjct: 121 ENSSAVLLQWHEKALAVGGLGSIIRVLTAR 150
>ref|NP_001127829.1| actin-related protein 2/3 complex subunit 5 [Sus scrofa].
Length = 151
Score = 202 bits (515), Expect = 2e-52
Identities = 101/151 (66%), Positives = 126/151 (83%), Gaps = 1/151 (0%)
Frame = +1
Query: 151 MARNTLSS-RFRRVDIDEFDENKFVDEQXXXXXXXXXPGPDPSEVDGLLRQGDMLRAFHA 327
M++NT+SS RFR+VD+DE+DENKFVDE+ GPD EVD LRQG+M A A
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQA---GPDEGEVDSCLRQGNMTAALQA 57
Query: 328 ALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKP 507
AL+N P+NTK+QAVK+RA +VLKVL +FK+++IE+AVQSLD+NG+DLLMKYIYKGFE P
Sbjct: 58 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 117
Query: 508 TENSSAVLLQWHEKALAVGGLGSIIRVLTAR 600
++NSSA+LLQWHEKALA GG+GSI+RVLTAR
Sbjct: 118 SDNSSAMLLQWHEKALAAGGVGSIVRVLTAR 148
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,236,503
Number of extensions: 585133
Number of successful extensions: 2297
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2294
Number of HSP's successfully gapped: 3
Length of query: 341
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 241
Effective length of database: 8,854,232
Effective search space: 2133869912
Effective search space used: 2133869912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003366
(1023 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 745 0.0
Sscrofa_Chr09 220 1e-54
>Sscrofa_Chr01
|| Length = 315321322
Score = 745 bits (376), Expect = 0.0
Identities = 443/476 (93%)
Strand = Plus / Plus
Query: 548 aggcattagcagtaggaggactaggctccattataagagttcttacagcaagaaagactg 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299478481 aggcattagcagtaggaggactaggctccattataagagttcttacagcaagaaagactg 299478540
Query: 608 tttnnnnnnnnnnnnnnnnnnnnnnnnngactcatgttaccttgagaagaattttggatg 667
||| ||||||||||||||||||||||||||||||||
Sbjct: 299478541 tttaaaacaaaaacaaacaaacaaaaaagactcatgttaccttgagaagaattttggatg 299478600
Query: 668 cacaggctggcgaagaagggattgacaatcggccatcttcctagcaactcccaactaaac 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299478601 cacaggctggcgaagaagggattgacaatcggccatcttcctagcaactcccaactaaac 299478660
Query: 728 aatttcaggacatgcatccgctgaagtgtattttattttcaaggtggagggagaaatcgt 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299478661 aatttcaggacatgcatccgctgaagtgtattttattttcaaggtggagggagaaatcgt 299478720
Query: 788 cttactgtttcctaaatcctttgcaggatctgatagtctatgcctttgtccgcgagtaat 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299478721 cttactgtttcctaaatcctttgcaggatctgatagtctatgcctttgtccgcgagtaat 299478780
Query: 848 gcagaactgacattgtgactgtctgccagagtggctggccatcattggtcggtcaggtgt 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299478781 gcagaactgacattgtgactgtctgccagagtggctggccatcattggtcggtcaggtgt 299478840
Query: 908 acctgtgtgcactgcctgttaaaaacaggggagggatgatttgggcaggtgcagatccaa 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299478841 acctgtgtgcactgcctgttaaaaacaggggagggatgatttgggcaggtgcagatccaa 299478900
Query: 968 gggctgcggtaaagggagagcttggnnnnnnngagtggaaaacccccgagggtttg 1023
||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 299478901 gggctgcggtaaagggagagcttggttttttgaagtggaaaacccccgagggtttg 299478956
Score = 474 bits (239), Expect = e-131
Identities = 278/297 (93%)
Strand = Plus / Plus
Query: 4 gggcgggcagctgcggctgcgcgcggaggaggtggaggaggtgccgggtcgccgcttccc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299470677 gggcgggcagctgcggctgcgcgcggaggaggtggaggaggtgccgggtcgccgcttccc 299470736
Query: 64 gcccccgagccggagccggttccgagcggagtggagtggaggtctgccccggagaggagc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299470737 gcccccgagccggagccggttccgagcggagtggagtggaggtctgccccggagaggagc 299470796
Query: 124 tggctgagcgggcgccgagcccccgccatggcccggaacacattgtcctcgcgcttccgt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299470797 tggctgagcgggcgccgagcccccgccatggcccggaacacattgtcctcgcgcttccgt 299470856
Query: 184 cgagtggacatcgatgaatttgatgagaacaaattcgtggacgagcaggaggannnnnnn 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299470857 cgagtggacatcgatgaatttgatgagaacaaattcgtggacgagcaggaggaggcggcg 299470916
Query: 244 nnnnnnnnnnncgagccaggcccggaccctagcgaagtggatgggctcctgcggcaa 300
|||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 299470917 gcggcggcggccgagccaggcccggaccctagcgaagtggacgggctcctgcggcaa 299470973
Score = 357 bits (180), Expect = 8e-96
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 371 aggaacgggcccagggtgtggtgctgaaagtgcttacaaattttaagagcagcgaaattg 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299477054 aggaacgggcccagggtgtggtgctgaaagtgcttacaaattttaagagcagcgaaattg 299477113
Query: 431 agcaggctgtgcagtcactggacagaaatggcatcgacttgctaatgaagtacatttata 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299477114 agcaggctgtgcagtcactggacagaaatggcatcgacttgctaatgaagtacatttata 299477173
Query: 491 aagggtttgagaagcccacagaaaacagcagcgcagtgttactccagtggcatgaaaagg 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299477174 aagggtttgagaagcccacagaaaacagcagcgcagtgttactccagtggcatgaaaagg 299477233
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 300 aggggacatgcttcgggcatttcacgcagccttacggaactcccccgtcaacaccaagaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299475068 aggggacatgcttcgggcatttcacgcagccttacggaactcccccgtcaacaccaagaa 299475127
Query: 360 tcaagctgtgaagg 373
||||||||||||||
Sbjct: 299475128 tcaagctgtgaagg 299475141
>Sscrofa_Chr09
|| Length = 153670197
Score = 220 bits (111), Expect = 1e-54
Identities = 238/280 (85%), Gaps = 4/280 (1%)
Strand = Plus / Plus
Query: 647 ccttgagaagaattttggatgcacaggctggcgaagaagggattgacaatcggccatctt 706
|||| |||||||||||| |||| ||||||| |||||||||||| ||||| | | ||||
Sbjct: 34629223 ccttaagaagaattttgtgtgcaaaggctggagaagaagggattaacaatggcctgtctt 34629282
Query: 707 cctagcaactcccaactaaacaatttcaggacatgcatccgctgaagtgtattttatttt 766
||||| | ||| ||| ||||| | |||| |||||||||| |||||||||||||||||||
Sbjct: 34629283 cctaggagctctcaattaaactacttcaatacatgcatcccctgaagtgtattttatttt 34629342
Query: 767 caaggtggagggagaaatcgtcttactgtttcctaaatcctttgcaggatctgatagtct 826
|||||| ||| |||||||| ||| | |||||||||||||||||||||||| |||||||||
Sbjct: 34629343 caaggtagagagagaaatcatctcagtgtttcctaaatcctttgcaggatttgatagtct 34629402
Query: 827 atgcctttgtccgcgagtaatgcagaactgacattgtgactgtctgccagagtggctggc 886
|| ||||||| | | || |||||||||||||||||||||||||||| |||| | ||||||
Sbjct: 34629403 atccctttgttcaccaggaatgcagaactgacattgtgactgtctgtcagaatagctggc 34629462
Query: 887 catcattggtcggtcaggtgtacctgtgtgcactgcctgt 926
|| || | ||||||||||||||||||||| |||||
Sbjct: 34629463 ca----gagttgatcaggtgtacctgtgtgcactacctgt 34629498
Score = 127 bits (64), Expect = 1e-26
Identities = 127/147 (86%), Gaps = 2/147 (1%)
Strand = Plus / Plus
Query: 466 gacttgctaatgaagtacatttataaagggtttgagaagcccacagaaaacagcagcgca 525
|||||||||| ||||||| ||| ||||||||||||||||||||| |||| ||||| |||
Sbjct: 34628904 gacttgctaagaaagtacacttacaaagggtttgagaagcccacaaaaaatagcagtgca 34628963
Query: 526 gtgttactccagtggcatgaaaaggcattagcagtaggaggactaggctccattata--a 583
|||||||| |||| ||||||||| ||||||||||| ||| |||||||||||| || |
Sbjct: 34628964 atgttactctagtgacatgaaaagatattagcagtagaaggtctaggctccattgtaaga 34629023
Query: 584 gagttcttacagcaagaaagactgttt 610
||||| ||||| ||||||||| |||||
Sbjct: 34629024 gagttattacaacaagaaagagtgttt 34629050
Score = 58.0 bits (29), Expect = 1e-05
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 470 tgctaatgaagtacatttataaagggtttgagaagcccacagaaaacagcagcgcagtgt 529
||||||||||||| ||||||||||| ||||||| ||| | || || ||||| || |||
Sbjct: 137172570 tgctaatgaagtatatttataaaggctttgagagcccctctgacaatagcagtgccatgt 137172511
Query: 530 tactccagtggcatgaaaagg 550
|||| |||||||| |||||||
Sbjct: 137172510 tactacagtggcacgaaaagg 137172490
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,067,815
Number of extensions: 164
Number of successful extensions: 164
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 9
Length of query: 1023
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1002
Effective length of database: 2,808,413,156
Effective search space: 2814029982312
Effective search space used: 2814029982312
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)