Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003369
(1107 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069305.2| nibrin [Bos taurus]. 585 e-167
Alignment gi|XP_002692869.1| PREDICTED: nibrin [Bos taurus]. 581 e-166
Alignment gi|XP_001789004.1| PREDICTED: nibrin isoform 2 [Bos taurus]. 581 e-166
>ref|NP_001069305.2| nibrin [Bos taurus].
Length = 754
Score = 585 bits (1509), Expect = e-167
Identities = 287/323 (88%), Positives = 304/323 (94%)
Frame = +2
Query: 137 MWKLIPAAASARDPYRLLTGVEYIVGRKNCDILIEDDQSISRNHAILTANFSITNLSQTD 316
MWKL+PAA AR+PYRLLTGVEYIVGRKNC ILIEDDQSISRNHA LTANFS+TNLSQTD
Sbjct: 1 MWKLVPAAGPAREPYRLLTGVEYIVGRKNCGILIEDDQSISRNHATLTANFSVTNLSQTD 60
Query: 317 EIPILTIKDNSKYGTFVNEEKMRTDFSQTLKTGDRVTFGVFKSKFRVEYEPLVACSSCLD 496
EIP+LTIKDNSKYGTFVNEEKM+ SQ LK+GDRVTFGVF+SKFRVEYEPLVACSSCLD
Sbjct: 61 EIPVLTIKDNSKYGTFVNEEKMQNGLSQILKSGDRVTFGVFESKFRVEYEPLVACSSCLD 120
Query: 497 VSGKTALSQTILQLGGLTMNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEFL 676
VSGKTALS ILQLGGLT+NNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEFL
Sbjct: 121 VSGKTALSHAILQLGGLTVNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEFL 180
Query: 677 KAVQSKKHPPEIERFYPPVDEPAIVSKNIDLSGRQERRQIFKGKTFVFLNAKQHKKLSAA 856
KAVQSKK PEIE FYPPVDEPAI SKNIDLSGRQER+QIFKGKTFVFLNAKQHKKLSAA
Sbjct: 181 KAVQSKKQLPEIESFYPPVDEPAIESKNIDLSGRQERKQIFKGKTFVFLNAKQHKKLSAA 240
Query: 857 VVFGGGDARLITEENEEEDSFFSAPGTCVVDIGITDSQTLIPDSQKKWLHSIMDILQRRG 1036
V+FGGGDARLITEEN+E+DSFFSAPGTCVVD G+TDSQT IPDSQKKW+HSIMDILQRRG
Sbjct: 241 VIFGGGDARLITEENKEDDSFFSAPGTCVVDAGLTDSQTFIPDSQKKWIHSIMDILQRRG 300
Query: 1037 LRLIPEAKIXLASIFITTENYCD 1105
LR IPEA+I LA +F+TTENYCD
Sbjct: 301 LRPIPEAEIGLAVLFVTTENYCD 323
>ref|XP_002692869.1| PREDICTED: nibrin [Bos taurus].
Length = 754
Score = 581 bits (1497), Expect = e-166
Identities = 287/324 (88%), Positives = 304/324 (93%), Gaps = 1/324 (0%)
Frame = +2
Query: 137 MWKLIPAAASAR-DPYRLLTGVEYIVGRKNCDILIEDDQSISRNHAILTANFSITNLSQT 313
MWKL+PAA AR +PYRLLTGVEYIVGRKNC ILIEDDQSISRNHA LTANFS+TNLSQT
Sbjct: 1 MWKLVPAAGPARGEPYRLLTGVEYIVGRKNCGILIEDDQSISRNHATLTANFSVTNLSQT 60
Query: 314 DEIPILTIKDNSKYGTFVNEEKMRTDFSQTLKTGDRVTFGVFKSKFRVEYEPLVACSSCL 493
DEIP+LTIKDNSKYGTFVNEEKM+ SQ LK+GDRVTFGVF+SKFRVEYEPLVACSSCL
Sbjct: 61 DEIPVLTIKDNSKYGTFVNEEKMQNGLSQILKSGDRVTFGVFESKFRVEYEPLVACSSCL 120
Query: 494 DVSGKTALSQTILQLGGLTMNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEF 673
DVSGKTALS ILQLGGLT+NNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEF
Sbjct: 121 DVSGKTALSHAILQLGGLTVNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEF 180
Query: 674 LKAVQSKKHPPEIERFYPPVDEPAIVSKNIDLSGRQERRQIFKGKTFVFLNAKQHKKLSA 853
LKAVQSKK PEIE FYPPVDEPAI SKNIDLSGRQER+QIFKGKTFVFLNAKQHKKLSA
Sbjct: 181 LKAVQSKKQLPEIESFYPPVDEPAIESKNIDLSGRQERKQIFKGKTFVFLNAKQHKKLSA 240
Query: 854 AVVFGGGDARLITEENEEEDSFFSAPGTCVVDIGITDSQTLIPDSQKKWLHSIMDILQRR 1033
AV+FGGGDARLITEEN+E+DSFFSAPGTCVVD G+TDSQT IPDSQKKW+HSIMDILQRR
Sbjct: 241 AVIFGGGDARLITEENKEDDSFFSAPGTCVVDAGLTDSQTFIPDSQKKWIHSIMDILQRR 300
Query: 1034 GLRLIPEAKIXLASIFITTENYCD 1105
GLR IPEA+I LA +F+TTENYCD
Sbjct: 301 GLRPIPEAEIGLAVLFVTTENYCD 324
>ref|XP_001789004.1| PREDICTED: nibrin isoform 2 [Bos taurus].
Length = 754
Score = 581 bits (1497), Expect = e-166
Identities = 287/324 (88%), Positives = 304/324 (93%), Gaps = 1/324 (0%)
Frame = +2
Query: 137 MWKLIPAAASAR-DPYRLLTGVEYIVGRKNCDILIEDDQSISRNHAILTANFSITNLSQT 313
MWKL+PAA AR +PYRLLTGVEYIVGRKNC ILIEDDQSISRNHA LTANFS+TNLSQT
Sbjct: 1 MWKLVPAAGPARGEPYRLLTGVEYIVGRKNCGILIEDDQSISRNHATLTANFSVTNLSQT 60
Query: 314 DEIPILTIKDNSKYGTFVNEEKMRTDFSQTLKTGDRVTFGVFKSKFRVEYEPLVACSSCL 493
DEIP+LTIKDNSKYGTFVNEEKM+ SQ LK+GDRVTFGVF+SKFRVEYEPLVACSSCL
Sbjct: 61 DEIPVLTIKDNSKYGTFVNEEKMQNGLSQILKSGDRVTFGVFESKFRVEYEPLVACSSCL 120
Query: 494 DVSGKTALSQTILQLGGLTMNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEF 673
DVSGKTALS ILQLGGLT+NNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEF
Sbjct: 121 DVSGKTALSHAILQLGGLTVNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEF 180
Query: 674 LKAVQSKKHPPEIERFYPPVDEPAIVSKNIDLSGRQERRQIFKGKTFVFLNAKQHKKLSA 853
LKAVQSKK PEIE FYPPVDEPAI SKNIDLSGRQER+QIFKGKTFVFLNAKQHKKLSA
Sbjct: 181 LKAVQSKKQLPEIESFYPPVDEPAIESKNIDLSGRQERKQIFKGKTFVFLNAKQHKKLSA 240
Query: 854 AVVFGGGDARLITEENEEEDSFFSAPGTCVVDIGITDSQTLIPDSQKKWLHSIMDILQRR 1033
AV+FGGGDARLITEEN+E+DSFFSAPGTCVVD G+TDSQT IPDSQKKW+HSIMDILQRR
Sbjct: 241 AVIFGGGDARLITEENKEDDSFFSAPGTCVVDAGLTDSQTFIPDSQKKWIHSIMDILQRR 300
Query: 1034 GLRLIPEAKIXLASIFITTENYCD 1105
GLR IPEA+I LA +F+TTENYCD
Sbjct: 301 GLRPIPEAEIGLAVLFVTTENYCD 324
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,587,742
Number of extensions: 950787
Number of successful extensions: 2957
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2955
Number of HSP's successfully gapped: 3
Length of query: 369
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 265
Effective length of database: 14,240,222
Effective search space: 3773658830
Effective search space used: 3773658830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003369
(1107 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854066.1| PREDICTED: similar to nibrin isoform 1 [Canis f... 534 e-152
>ref|XP_854066.1| PREDICTED: similar to nibrin isoform 1 [Canis familiaris].
Length = 702
Score = 534 bits (1375), Expect = e-152
Identities = 259/310 (83%), Positives = 291/310 (93%)
Frame = +2
Query: 176 PYRLLTGVEYIVGRKNCDILIEDDQSISRNHAILTANFSITNLSQTDEIPILTIKDNSKY 355
P+RLLTGVEYIVGRKNC ILIE DQSISR+HA LTANFS+TNLSQT+EIPILT+KDNSKY
Sbjct: 247 PFRLLTGVEYIVGRKNCSILIEGDQSISRSHAALTANFSVTNLSQTEEIPILTLKDNSKY 306
Query: 356 GTFVNEEKMRTDFSQTLKTGDRVTFGVFKSKFRVEYEPLVACSSCLDVSGKTALSQTILQ 535
GTFVN+E+M+ SQ LKTGDRVTFGVF+SKFRVEYEPLVACSSCLDVSGKTAL+Q ILQ
Sbjct: 307 GTFVNDERMQHGLSQVLKTGDRVTFGVFESKFRVEYEPLVACSSCLDVSGKTALNQAILQ 366
Query: 536 LGGLTMNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEFLKAVQSKKHPPEIE 715
LGGLT+NNWTEECTHLVM+SVKVTIKTICALICGRPIVKPEYFTEFLKAV++ K PP+IE
Sbjct: 367 LGGLTVNNWTEECTHLVMISVKVTIKTICALICGRPIVKPEYFTEFLKAVKANKQPPQIE 426
Query: 716 RFYPPVDEPAIVSKNIDLSGRQERRQIFKGKTFVFLNAKQHKKLSAAVVFGGGDARLITE 895
+YPP+DEPAI +KNIDLSGRQER+QIF+GK FVFLNAKQ+KKLS+AV+FGGGDARLITE
Sbjct: 427 SYYPPIDEPAIGNKNIDLSGRQERKQIFRGKMFVFLNAKQYKKLSSAVIFGGGDARLITE 486
Query: 896 ENEEEDSFFSAPGTCVVDIGITDSQTLIPDSQKKWLHSIMDILQRRGLRLIPEAKIXLAS 1075
EN+EE SFFSAPG CVVD+GIT+SQTLIPDSQKKW+HSIMD LQR+GLR IPEA+I LA
Sbjct: 487 ENKEEYSFFSAPGICVVDVGITNSQTLIPDSQKKWIHSIMDKLQRQGLRPIPEAEIGLAV 546
Query: 1076 IFITTENYCD 1105
IF+TTE+YC+
Sbjct: 547 IFMTTESYCN 556
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,327,298
Number of extensions: 981276
Number of successful extensions: 3394
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3394
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 265
Effective length of database: 15,407,560
Effective search space: 4083003400
Effective search space used: 4083003400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003369
(1107 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002476.2| nibrin [Homo sapiens]. 557 e-159
>ref|NP_002476.2| nibrin [Homo sapiens].
Length = 754
Score = 557 bits (1435), Expect = e-159
Identities = 270/324 (83%), Positives = 302/324 (93%), Gaps = 1/324 (0%)
Frame = +2
Query: 137 MWKLIPAAASAR-DPYRLLTGVEYIVGRKNCDILIEDDQSISRNHAILTANFSITNLSQT 313
MWKL+PAA A +PYRLLTGVEY+VGRKNC ILIE+DQSISRNHA+LTANFS+TNLSQT
Sbjct: 1 MWKLLPAAGPAGGEPYRLLTGVEYVVGRKNCAILIENDQSISRNHAVLTANFSVTNLSQT 60
Query: 314 DEIPILTIKDNSKYGTFVNEEKMRTDFSQTLKTGDRVTFGVFKSKFRVEYEPLVACSSCL 493
DEIP+LT+KDNSKYGTFVNEEKM+ FS+TLK+GD +TFGVF SKFR+EYEPLVACSSCL
Sbjct: 61 DEIPVLTLKDNSKYGTFVNEEKMQNGFSRTLKSGDGITFGVFGSKFRIEYEPLVACSSCL 120
Query: 494 DVSGKTALSQTILQLGGLTMNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEF 673
DVSGKTAL+Q ILQLGG T+NNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEF
Sbjct: 121 DVSGKTALNQAILQLGGFTVNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEF 180
Query: 674 LKAVQSKKHPPEIERFYPPVDEPAIVSKNIDLSGRQERRQIFKGKTFVFLNAKQHKKLSA 853
LKAV+SKK PP+IE FYPP+DEP+I SKN+DLSGRQER+QIFKGKTF+FLNAKQHKKLS+
Sbjct: 181 LKAVESKKQPPQIESFYPPLDEPSIGSKNVDLSGRQERKQIFKGKTFIFLNAKQHKKLSS 240
Query: 854 AVVFGGGDARLITEENEEEDSFFSAPGTCVVDIGITDSQTLIPDSQKKWLHSIMDILQRR 1033
AVVFGGG+ARLITEENEEE +FF APGTCVVD GIT+SQTLIPD QKKW+ SIMD+LQR+
Sbjct: 241 AVVFGGGEARLITEENEEEHNFFLAPGTCVVDTGITNSQTLIPDCQKKWIQSIMDMLQRQ 300
Query: 1034 GLRLIPEAKIXLASIFITTENYCD 1105
GLR IPEA+I LA IF+TT+NYCD
Sbjct: 301 GLRPIPEAEIGLAVIFMTTKNYCD 324
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,578,331
Number of extensions: 973358
Number of successful extensions: 3035
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3030
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 265
Effective length of database: 14,868,908
Effective search space: 3940260620
Effective search space used: 3940260620
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003369
(1107 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038780.3| nibrin [Mus musculus]. 534 e-152
>ref|NP_038780.3| nibrin [Mus musculus].
Length = 751
Score = 534 bits (1375), Expect = e-152
Identities = 259/324 (79%), Positives = 292/324 (90%), Gaps = 1/324 (0%)
Frame = +2
Query: 137 MWKLIPAAASAR-DPYRLLTGVEYIVGRKNCDILIEDDQSISRNHAILTANFSITNLSQT 313
MWKL+PAA +A +PYRLL GVEY+VGRKNC ILIE+DQSISRNHA+LT NF +T+LSQT
Sbjct: 1 MWKLLPAAGAAPGEPYRLLAGVEYVVGRKNCGILIENDQSISRNHAVLTVNFPVTSLSQT 60
Query: 314 DEIPILTIKDNSKYGTFVNEEKMRTDFSQTLKTGDRVTFGVFKSKFRVEYEPLVACSSCL 493
DEIP LTIKDNSKYGTFVNEEKM+T S TLKTGDRVTFGVF+SKFRVEYEPLV CSSCL
Sbjct: 61 DEIPTLTIKDNSKYGTFVNEEKMQTGLSCTLKTGDRVTFGVFESKFRVEYEPLVVCSSCL 120
Query: 494 DVSGKTALSQTILQLGGLTMNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEF 673
DVSGKT L+Q ILQLGGLT NNWTEECTHLVM +VKVTIKTICALICGRPI+KPEYF+EF
Sbjct: 121 DVSGKTVLNQAILQLGGLTANNWTEECTHLVMSAVKVTIKTICALICGRPIIKPEYFSEF 180
Query: 674 LKAVQSKKHPPEIERFYPPVDEPAIVSKNIDLSGRQERRQIFKGKTFVFLNAKQHKKLSA 853
LKAV+SKK PP+IE FYPP+DEPAI SK++DLSGR ER+QIFKGKTFVFLNAKQHKKLS+
Sbjct: 181 LKAVESKKQPPDIESFYPPIDEPAIGSKSVDLSGRHERKQIFKGKTFVFLNAKQHKKLSS 240
Query: 854 AVVFGGGDARLITEENEEEDSFFSAPGTCVVDIGITDSQTLIPDSQKKWLHSIMDILQRR 1033
AV FGGG+ARL+ E++EEE SFFSAPGTCVVD+GIT++Q +I SQKKW+H IMD LQR
Sbjct: 241 AVAFGGGEARLMAEDDEEEQSFFSAPGTCVVDVGITNTQLIISHSQKKWIHLIMDTLQRN 300
Query: 1034 GLRLIPEAKIXLASIFITTENYCD 1105
GLR IPEA+I LA IF+TTENYC+
Sbjct: 301 GLRPIPEAEIGLAVIFMTTENYCN 324
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,802,684
Number of extensions: 826166
Number of successful extensions: 2573
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2571
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 266
Effective length of database: 12,523,851
Effective search space: 3331344366
Effective search space used: 3331344366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003369
(1107 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001924473.2| PREDICTED: nibrin [Sus scrofa]. 597 e-171
>ref|XP_001924473.2| PREDICTED: nibrin [Sus scrofa].
Length = 309
Score = 597 bits (1540), Expect = e-171
Identities = 298/298 (100%), Positives = 298/298 (100%)
Frame = +2
Query: 137 MWKLIPAAASARDPYRLLTGVEYIVGRKNCDILIEDDQSISRNHAILTANFSITNLSQTD 316
MWKLIPAAASARDPYRLLTGVEYIVGRKNCDILIEDDQSISRNHAILTANFSITNLSQTD
Sbjct: 1 MWKLIPAAASARDPYRLLTGVEYIVGRKNCDILIEDDQSISRNHAILTANFSITNLSQTD 60
Query: 317 EIPILTIKDNSKYGTFVNEEKMRTDFSQTLKTGDRVTFGVFKSKFRVEYEPLVACSSCLD 496
EIPILTIKDNSKYGTFVNEEKMRTDFSQTLKTGDRVTFGVFKSKFRVEYEPLVACSSCLD
Sbjct: 61 EIPILTIKDNSKYGTFVNEEKMRTDFSQTLKTGDRVTFGVFKSKFRVEYEPLVACSSCLD 120
Query: 497 VSGKTALSQTILQLGGLTMNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEFL 676
VSGKTALSQTILQLGGLTMNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEFL
Sbjct: 121 VSGKTALSQTILQLGGLTMNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEFL 180
Query: 677 KAVQSKKHPPEIERFYPPVDEPAIVSKNIDLSGRQERRQIFKGKTFVFLNAKQHKKLSAA 856
KAVQSKKHPPEIERFYPPVDEPAIVSKNIDLSGRQERRQIFKGKTFVFLNAKQHKKLSAA
Sbjct: 181 KAVQSKKHPPEIERFYPPVDEPAIVSKNIDLSGRQERRQIFKGKTFVFLNAKQHKKLSAA 240
Query: 857 VVFGGGDARLITEENEEEDSFFSAPGTCVVDIGITDSQTLIPDSQKKWLHSIMDILQR 1030
VVFGGGDARLITEENEEEDSFFSAPGTCVVDIGITDSQTLIPDSQKKWLHSIMDILQR
Sbjct: 241 VVFGGGDARLITEENEEEDSFFSAPGTCVVDIGITDSQTLIPDSQKKWLHSIMDILQR 298
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,755,894
Number of extensions: 605723
Number of successful extensions: 1881
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1878
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 269
Effective length of database: 8,854,232
Effective search space: 2381788408
Effective search space used: 2381788408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003369
(1107 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 391 e-106
>Sscrofa_Chr04
|| Length = 143465943
Score = 391 bits (197), Expect = e-106
Identities = 197/197 (100%)
Strand = Plus / Plus
Query: 834 agcataagaaattaagtgcagcagttgtatttggaggaggagatgctaggttgataacag 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51276664 agcataagaaattaagtgcagcagttgtatttggaggaggagatgctaggttgataacag 51276723
Query: 894 aagaaaatgaagaagaagatagtttcttttcagctcctggaacttgtgttgttgatatag 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51276724 aagaaaatgaagaagaagatagtttcttttcagctcctggaacttgtgttgttgatatag 51276783
Query: 954 gaataacagattcacagaccttaattcctgactctcagaaaaaatggcttcattcaatta 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51276784 gaataacagattcacagaccttaattcctgactctcagaaaaaatggcttcattcaatta 51276843
Query: 1014 tggatatactccaaagg 1030
|||||||||||||||||
Sbjct: 51276844 tggatatactccaaagg 51276860
Score = 343 bits (173), Expect = 1e-91
Identities = 173/173 (100%)
Strand = Plus / Plus
Query: 1 ctctttttaggcccgcccggctcccgggagcgcgcacgtctcagagtccgcgccgactgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51264101 ctctttttaggcccgcccggctcccgggagcgcgcacgtctcagagtccgcgccgactgc 51264160
Query: 61 gggcgctacggccacgcacgtcggtcgctgcggtcacgctgctgcatgtcggatccaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51264161 gggcgctacggccacgcacgtcggtcgctgcggtcacgctgctgcatgtcggatccaacc 51264220
Query: 121 ctgaggatccaggaccatgtggaagctgattcctgccgcggcctcggcccgag 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51264221 ctgaggatccaggaccatgtggaagctgattcctgccgcggcctcggcccgag 51264273
Score = 323 bits (163), Expect = 1e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 451 cagagtagagtatgaacctttggttgcctgctcttcttgtttagatgtctctgggaaaac 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51269086 cagagtagagtatgaacctttggttgcctgctcttcttgtttagatgtctctgggaaaac 51269145
Query: 511 tgctttaagtcaaactatattgcaacttggaggacttactatgaacaattggacagagga 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51269146 tgctttaagtcaaactatattgcaacttggaggacttactatgaacaattggacagagga 51269205
Query: 571 atgtacacaccttgtcatggtatcagttaaagttaccattaaa 613
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51269206 atgtacacaccttgtcatggtatcagttaaagttaccattaaa 51269248
Score = 297 bits (150), Expect = 7e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 304 gagtcaaacagatgaaatccctatattgacaataaaagataattctaagtatggtacctt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51268523 gagtcaaacagatgaaatccctatattgacaataaaagataattctaagtatggtacctt 51268582
Query: 364 tgttaatgaggaaaaaatgcggactgacttttcccaaactttgaagacaggggatagagt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51268583 tgttaatgaggaaaaaatgcggactgacttttcccaaactttgaagacaggggatagagt 51268642
Query: 424 tacctttggagtgtttaaaagtaaattcag 453
||||||||||||||||||||||||||||||
Sbjct: 51268643 tacctttggagtgtttaaaagtaaattcag 51268672
Score = 264 bits (133), Expect = 9e-68
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 172 agacccatacagacttttgactggtgttgagtacattgttggaaggaaaaattgtgacat 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51266358 agacccatacagacttttgactggtgttgagtacattgttggaaggaaaaattgtgacat 51266417
Query: 232 tttaattgaagatgatcaatcaatcagtcgaaatcatgctatattaactgctaacttttc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51266418 tttaattgaagatgatcaatcaatcagtcgaaatcatgctatattaactgctaacttttc 51266477
Query: 292 tataaccaacctg 304
|||||||||||||
Sbjct: 51266478 tataaccaacctg 51266490
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 716 aggttttacccacctgttgatgaaccagctatcgtaagtaaaaatattgatctgtcggga 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51275612 aggttttacccacctgttgatgaaccagctatcgtaagtaaaaatattgatctgtcggga 51275671
Query: 776 cggcaggaaagaaggcaaatcttcaaagggaaaacatttgtctttctaaacgccaagcag 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51275672 cggcaggaaagaaggcaaatcttcaaagggaaaacatttgtctttctaaacgccaagcag 51275731
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 614 acaatatgtgcactcatttgcgggcgtccaattgtaaagccagaatattttactgaattt 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51271820 acaatatgtgcactcatttgcgggcgtccaattgtaaagccagaatattttactgaattt 51271879
Query: 674 cttaaagcagttcagtctaagaaacaccctccagaaattgaaaggt 719
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51271880 cttaaagcagttcagtctaagaaacaccctccagaaattgaaaggt 51271925
Score = 121 bits (61), Expect = 9e-25
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 1028 aggaggggtcttagacttattcctgaagcgaaaattgncttggcaagtattttcattact 1087
||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||
Sbjct: 51283314 aggaggggtcttagacttattcctgaagcagaaattggcttggcagttattttcattact 51283373
Query: 1088 acagagaattattgtgatcc 1107
||||||||||||||||||||
Sbjct: 51283374 acagagaattattgtgatcc 51283393
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,779,700
Number of extensions: 288
Number of successful extensions: 288
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 8
Length of query: 1107
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1086
Effective length of database: 2,808,413,156
Effective search space: 3049936687416
Effective search space used: 3049936687416
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)