Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003379
(993 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029755.1| conserved oligomeric Golgi complex subunit 4... 576 e-167
>ref|NP_001029755.1| conserved oligomeric Golgi complex subunit 4 [Bos taurus].
Length = 785
Score = 576 bits (1484), Expect(2) = e-167
Identities = 297/313 (94%), Positives = 300/313 (95%)
Frame = +3
Query: 9 MADLDSPQKLSXXXXXXXXXXXXRCSEISTELIRSLTELQELEAVYERLCGEEKVVEREL 188
MADLDSPQKLS CSEISTELIRSLT+LQELEAVYERLCGEEKVVEREL
Sbjct: 1 MADLDSPQKLSGVPRPPDGVGGGSCSEISTELIRSLTDLQELEAVYERLCGEEKVVEREL 60
Query: 189 DALLEQQNTIESKMVTLHRMGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLAKN 368
DALLEQQNTIESKMVTLHRMGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLAKN
Sbjct: 61 DALLEQQNTIESKMVTLHRMGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLAKN 120
Query: 369 RLYQAIQRADDILDLKFCMDGVQTALRNEDYEQAAAHIHRYLCLDKSVIELSRQGKEGSM 548
RLYQAIQRADDILDLKFCMDGVQTALRNEDYEQAAAHIHRYLCLDKSVIELSRQGKEGSM
Sbjct: 121 RLYQAIQRADDILDLKFCMDGVQTALRNEDYEQAAAHIHRYLCLDKSVIELSRQGKEGSM 180
Query: 549 IDANLKLLQEAEQRLKAIVTEKFAIATKEGDLPQVERFFKIFPLLGLHEDGLSKFSEYLC 728
IDANLKLLQEAEQRLKAIVTEKFA+ATKEGDLPQVERFFKIFPLLGLHE+GLSKFSEYLC
Sbjct: 181 IDANLKLLQEAEQRLKAIVTEKFAVATKEGDLPQVERFFKIFPLLGLHEEGLSKFSEYLC 240
Query: 729 KQVASKAEENLLLVLGTDMSDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRLY 908
KQVASKAEENLLLVLGTDMSDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRLY
Sbjct: 241 KQVASKAEENLLLVLGTDMSDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRLY 300
Query: 909 TLIKYLQVECDRQ 947
TLIKYLQVECDRQ
Sbjct: 301 TLIKYLQVECDRQ 313
Score = 32.3 bits (72), Expect(2) = e-167
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +1
Query: 946 RVEKVVDKFIKQRDY 990
+VEKVVDKFIKQRDY
Sbjct: 313 QVEKVVDKFIKQRDY 327
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,545,257
Number of extensions: 916165
Number of successful extensions: 3078
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3077
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003379
(993 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546836.1| PREDICTED: similar to Conserved oligomeric Golg... 577 e-168
Alignment gi|XP_862189.1| PREDICTED: similar to Conserved oligomeric Golg... 577 e-168
Alignment gi|XP_862158.1| PREDICTED: similar to Conserved oligomeric Golg... 458 e-133
Alignment gi|XP_862132.1| PREDICTED: similar to Conserved oligomeric Golg... 268 8e-76
>ref|XP_546836.1| PREDICTED: similar to Conserved oligomeric Golgi complex component
4 isoform 1 [Canis familiaris].
Length = 788
Score = 577 bits (1488), Expect(2) = e-168
Identities = 301/314 (95%), Positives = 302/314 (96%)
Frame = +3
Query: 6 KMADLDSPQKLSXXXXXXXXXXXXRCSEISTELIRSLTELQELEAVYERLCGEEKVVERE 185
KMADLDSPQKLS RCSEISTELIRSLTELQELEAVYERLCGEEKVVERE
Sbjct: 4 KMADLDSPQKLSGVSLPEGMGGG-RCSEISTELIRSLTELQELEAVYERLCGEEKVVERE 62
Query: 186 LDALLEQQNTIESKMVTLHRMGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLAK 365
LDALLEQQNTIESKMVTLHRMGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLAK
Sbjct: 63 LDALLEQQNTIESKMVTLHRMGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLAK 122
Query: 366 NRLYQAIQRADDILDLKFCMDGVQTALRNEDYEQAAAHIHRYLCLDKSVIELSRQGKEGS 545
NRLYQAIQRADDILDLKFCMDGVQTALRNEDYEQAAAHIHRYLCLDKSVIELSRQGKEGS
Sbjct: 123 NRLYQAIQRADDILDLKFCMDGVQTALRNEDYEQAAAHIHRYLCLDKSVIELSRQGKEGS 182
Query: 546 MIDANLKLLQEAEQRLKAIVTEKFAIATKEGDLPQVERFFKIFPLLGLHEDGLSKFSEYL 725
MIDANLKLLQEAEQRLKAIVTEKFAIATKEGDLPQVERFFKIFPLLGLHE+GLSKFSEYL
Sbjct: 183 MIDANLKLLQEAEQRLKAIVTEKFAIATKEGDLPQVERFFKIFPLLGLHEEGLSKFSEYL 242
Query: 726 CKQVASKAEENLLLVLGTDMSDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRL 905
CKQVASKAEENLLLVLGTDMSDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRL
Sbjct: 243 CKQVASKAEENLLLVLGTDMSDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRL 302
Query: 906 YTLIKYLQVECDRQ 947
YTLIKYLQVECDRQ
Sbjct: 303 YTLIKYLQVECDRQ 316
Score = 35.4 bits (80), Expect(2) = e-168
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +1
Query: 946 RVEKVVDKFIKQRDYH 993
+VEKVVDKFIKQRDYH
Sbjct: 316 QVEKVVDKFIKQRDYH 331
>ref|XP_862189.1| PREDICTED: similar to Conserved oligomeric Golgi complex component
4 isoform 5 [Canis familiaris].
Length = 767
Score = 577 bits (1488), Expect(2) = e-168
Identities = 301/314 (95%), Positives = 302/314 (96%)
Frame = +3
Query: 6 KMADLDSPQKLSXXXXXXXXXXXXRCSEISTELIRSLTELQELEAVYERLCGEEKVVERE 185
KMADLDSPQKLS RCSEISTELIRSLTELQELEAVYERLCGEEKVVERE
Sbjct: 4 KMADLDSPQKLSGVSLPEGMGGG-RCSEISTELIRSLTELQELEAVYERLCGEEKVVERE 62
Query: 186 LDALLEQQNTIESKMVTLHRMGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLAK 365
LDALLEQQNTIESKMVTLHRMGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLAK
Sbjct: 63 LDALLEQQNTIESKMVTLHRMGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLAK 122
Query: 366 NRLYQAIQRADDILDLKFCMDGVQTALRNEDYEQAAAHIHRYLCLDKSVIELSRQGKEGS 545
NRLYQAIQRADDILDLKFCMDGVQTALRNEDYEQAAAHIHRYLCLDKSVIELSRQGKEGS
Sbjct: 123 NRLYQAIQRADDILDLKFCMDGVQTALRNEDYEQAAAHIHRYLCLDKSVIELSRQGKEGS 182
Query: 546 MIDANLKLLQEAEQRLKAIVTEKFAIATKEGDLPQVERFFKIFPLLGLHEDGLSKFSEYL 725
MIDANLKLLQEAEQRLKAIVTEKFAIATKEGDLPQVERFFKIFPLLGLHE+GLSKFSEYL
Sbjct: 183 MIDANLKLLQEAEQRLKAIVTEKFAIATKEGDLPQVERFFKIFPLLGLHEEGLSKFSEYL 242
Query: 726 CKQVASKAEENLLLVLGTDMSDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRL 905
CKQVASKAEENLLLVLGTDMSDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRL
Sbjct: 243 CKQVASKAEENLLLVLGTDMSDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRL 302
Query: 906 YTLIKYLQVECDRQ 947
YTLIKYLQVECDRQ
Sbjct: 303 YTLIKYLQVECDRQ 316
Score = 35.4 bits (80), Expect(2) = e-168
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +1
Query: 946 RVEKVVDKFIKQRDYH 993
+VEKVVDKFIKQRDYH
Sbjct: 316 QVEKVVDKFIKQRDYH 331
>ref|XP_862158.1| PREDICTED: similar to Conserved oligomeric Golgi complex component
4 isoform 4 [Canis familiaris].
Length = 706
Score = 458 bits (1178), Expect(2) = e-133
Identities = 233/234 (99%), Positives = 234/234 (100%)
Frame = +3
Query: 246 MGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLAKNRLYQAIQRADDILDLKFCM 425
MGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLAKNRLYQAIQRADDILDLKFCM
Sbjct: 1 MGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLAKNRLYQAIQRADDILDLKFCM 60
Query: 426 DGVQTALRNEDYEQAAAHIHRYLCLDKSVIELSRQGKEGSMIDANLKLLQEAEQRLKAIV 605
DGVQTALRNEDYEQAAAHIHRYLCLDKSVIELSRQGKEGSMIDANLKLLQEAEQRLKAIV
Sbjct: 61 DGVQTALRNEDYEQAAAHIHRYLCLDKSVIELSRQGKEGSMIDANLKLLQEAEQRLKAIV 120
Query: 606 TEKFAIATKEGDLPQVERFFKIFPLLGLHEDGLSKFSEYLCKQVASKAEENLLLVLGTDM 785
TEKFAIATKEGDLPQVERFFKIFPLLGLHE+GLSKFSEYLCKQVASKAEENLLLVLGTDM
Sbjct: 121 TEKFAIATKEGDLPQVERFFKIFPLLGLHEEGLSKFSEYLCKQVASKAEENLLLVLGTDM 180
Query: 786 SDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRLYTLIKYLQVECDRQ 947
SDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRLYTLIKYLQVECDRQ
Sbjct: 181 SDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRLYTLIKYLQVECDRQ 234
Score = 35.4 bits (80), Expect(2) = e-133
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +1
Query: 946 RVEKVVDKFIKQRDYH 993
+VEKVVDKFIKQRDYH
Sbjct: 234 QVEKVVDKFIKQRDYH 249
>ref|XP_862132.1| PREDICTED: similar to Conserved oligomeric Golgi complex component
4 isoform 3 [Canis familiaris].
Length = 694
Score = 268 bits (684), Expect(2) = 8e-76
Identities = 136/150 (90%), Positives = 141/150 (94%)
Frame = +3
Query: 498 LDKSVIELSRQGKEGSMIDANLKLLQEAEQRLKAIVTEKFAIATKEGDLPQVERFFKIFP 677
++ ++ L R G MIDANLKLLQEAEQRLKAIVTEKFAIATKEGDLPQVERFFKIFP
Sbjct: 73 IESKMVTLHRMGPNLHMIDANLKLLQEAEQRLKAIVTEKFAIATKEGDLPQVERFFKIFP 132
Query: 678 LLGLHEDGLSKFSEYLCKQVASKAEENLLLVLGTDMSDRRAAVIFADTLTLLFEGIARIV 857
LLGLHE+GLSKFSEYLCKQVASKAEENLLLVLGTDMSDRRAAVIFADTLTLLFEGIARIV
Sbjct: 133 LLGLHEEGLSKFSEYLCKQVASKAEENLLLVLGTDMSDRRAAVIFADTLTLLFEGIARIV 192
Query: 858 ETHQPIVETYYGPGRLYTLIKYLQVECDRQ 947
ETHQPIVETYYGPGRLYTLIKYLQVECDRQ
Sbjct: 193 ETHQPIVETYYGPGRLYTLIKYLQVECDRQ 222
Score = 35.4 bits (80), Expect(2) = 8e-76
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +1
Query: 946 RVEKVVDKFIKQRDYH 993
+VEKVVDKFIKQRDYH
Sbjct: 222 QVEKVVDKFIKQRDYH 237
Score = 140 bits (353), Expect = 2e-33
Identities = 76/95 (80%), Positives = 79/95 (83%)
Frame = +3
Query: 6 KMADLDSPQKLSXXXXXXXXXXXXRCSEISTELIRSLTELQELEAVYERLCGEEKVVERE 185
KMADLDSPQKLS RCSEISTELIRSLTELQELEAVYERLCGEEKVVERE
Sbjct: 4 KMADLDSPQKLSGVSLPEGMGGG-RCSEISTELIRSLTELQELEAVYERLCGEEKVVERE 62
Query: 186 LDALLEQQNTIESKMVTLHRMGPNLQLIEGDAKQL 290
LDALLEQQNTIESKMVTLHRMGPNL +I+ + K L
Sbjct: 63 LDALLEQQNTIESKMVTLHRMGPNLHMIDANLKLL 97
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,037,212
Number of extensions: 943293
Number of successful extensions: 3294
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3283
Number of HSP's successfully gapped: 9
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003379
(993 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056201.2| conserved oligomeric Golgi complex subunit 4 is... 569 e-166
Alignment gi|NP_001182068.1| conserved oligomeric Golgi complex subunit 4... 569 e-166
>ref|NP_056201.2| conserved oligomeric Golgi complex subunit 4 isoform 1 [Homo
sapiens].
Length = 789
Score = 569 bits (1466), Expect(2) = e-166
Identities = 294/314 (93%), Positives = 297/314 (94%)
Frame = +3
Query: 6 KMADLDSPQKLSXXXXXXXXXXXXRCSEISTELIRSLTELQELEAVYERLCGEEKVVERE 185
KMADLDSP KLS RCSEIS ELIRSLTELQELEAVYERLCGEEKVVERE
Sbjct: 4 KMADLDSPPKLSGVQQPSEGVGGGRCSEISAELIRSLTELQELEAVYERLCGEEKVVERE 63
Query: 186 LDALLEQQNTIESKMVTLHRMGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLAK 365
LDALLEQQNTIESKMVTLHRMGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLAK
Sbjct: 64 LDALLEQQNTIESKMVTLHRMGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLAK 123
Query: 366 NRLYQAIQRADDILDLKFCMDGVQTALRNEDYEQAAAHIHRYLCLDKSVIELSRQGKEGS 545
NRLYQAIQRADDILDLKFCMDGVQTALR+EDYEQAAAH HRYLCLDKSVIELSRQGKEGS
Sbjct: 124 NRLYQAIQRADDILDLKFCMDGVQTALRSEDYEQAAAHTHRYLCLDKSVIELSRQGKEGS 183
Query: 546 MIDANLKLLQEAEQRLKAIVTEKFAIATKEGDLPQVERFFKIFPLLGLHEDGLSKFSEYL 725
MIDANLKLLQEAEQRLKAIV EKFAIATKEGDLPQVERFFKIFPLLGLHE+GL KFSEYL
Sbjct: 184 MIDANLKLLQEAEQRLKAIVAEKFAIATKEGDLPQVERFFKIFPLLGLHEEGLRKFSEYL 243
Query: 726 CKQVASKAEENLLLVLGTDMSDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRL 905
CKQVASKAEENLL+VLGTDMSDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRL
Sbjct: 244 CKQVASKAEENLLMVLGTDMSDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRL 303
Query: 906 YTLIKYLQVECDRQ 947
YTLIKYLQVECDRQ
Sbjct: 304 YTLIKYLQVECDRQ 317
Score = 35.4 bits (80), Expect(2) = e-166
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +1
Query: 946 RVEKVVDKFIKQRDYH 993
+VEKVVDKFIKQRDYH
Sbjct: 317 QVEKVVDKFIKQRDYH 332
>ref|NP_001182068.1| conserved oligomeric Golgi complex subunit 4 isoform 2 [Homo
sapiens].
Length = 768
Score = 569 bits (1466), Expect(2) = e-166
Identities = 294/314 (93%), Positives = 297/314 (94%)
Frame = +3
Query: 6 KMADLDSPQKLSXXXXXXXXXXXXRCSEISTELIRSLTELQELEAVYERLCGEEKVVERE 185
KMADLDSP KLS RCSEIS ELIRSLTELQELEAVYERLCGEEKVVERE
Sbjct: 4 KMADLDSPPKLSGVQQPSEGVGGGRCSEISAELIRSLTELQELEAVYERLCGEEKVVERE 63
Query: 186 LDALLEQQNTIESKMVTLHRMGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLAK 365
LDALLEQQNTIESKMVTLHRMGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLAK
Sbjct: 64 LDALLEQQNTIESKMVTLHRMGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLAK 123
Query: 366 NRLYQAIQRADDILDLKFCMDGVQTALRNEDYEQAAAHIHRYLCLDKSVIELSRQGKEGS 545
NRLYQAIQRADDILDLKFCMDGVQTALR+EDYEQAAAH HRYLCLDKSVIELSRQGKEGS
Sbjct: 124 NRLYQAIQRADDILDLKFCMDGVQTALRSEDYEQAAAHTHRYLCLDKSVIELSRQGKEGS 183
Query: 546 MIDANLKLLQEAEQRLKAIVTEKFAIATKEGDLPQVERFFKIFPLLGLHEDGLSKFSEYL 725
MIDANLKLLQEAEQRLKAIV EKFAIATKEGDLPQVERFFKIFPLLGLHE+GL KFSEYL
Sbjct: 184 MIDANLKLLQEAEQRLKAIVAEKFAIATKEGDLPQVERFFKIFPLLGLHEEGLRKFSEYL 243
Query: 726 CKQVASKAEENLLLVLGTDMSDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRL 905
CKQVASKAEENLL+VLGTDMSDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRL
Sbjct: 244 CKQVASKAEENLLMVLGTDMSDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRL 303
Query: 906 YTLIKYLQVECDRQ 947
YTLIKYLQVECDRQ
Sbjct: 304 YTLIKYLQVECDRQ 317
Score = 35.4 bits (80), Expect(2) = e-166
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +1
Query: 946 RVEKVVDKFIKQRDYH 993
+VEKVVDKFIKQRDYH
Sbjct: 317 QVEKVVDKFIKQRDYH 332
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,473,731
Number of extensions: 933206
Number of successful extensions: 3074
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3070
Number of HSP's successfully gapped: 4
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003379
(993 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598734.1| conserved oligomeric Golgi complex subunit 4 [M... 558 e-162
>ref|NP_598734.1| conserved oligomeric Golgi complex subunit 4 [Mus musculus].
Length = 785
Score = 558 bits (1439), Expect(2) = e-162
Identities = 288/313 (92%), Positives = 296/313 (94%)
Frame = +3
Query: 9 MADLDSPQKLSXXXXXXXXXXXXRCSEISTELIRSLTELQELEAVYERLCGEEKVVEREL 188
MA+++SP KLS CSEISTELIRSLTELQELEAVYERLCGEEK VE+EL
Sbjct: 1 MAEVESPLKLSGAPPPPEGVGGGHCSEISTELIRSLTELQELEAVYERLCGEEKAVEKEL 60
Query: 189 DALLEQQNTIESKMVTLHRMGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLAKN 368
DALLEQQNTIESKMVTLHRMGP+LQLIEGDAKQLAGMITFTC+LAENVSSKVRQLDLAKN
Sbjct: 61 DALLEQQNTIESKMVTLHRMGPSLQLIEGDAKQLAGMITFTCSLAENVSSKVRQLDLAKN 120
Query: 369 RLYQAIQRADDILDLKFCMDGVQTALRNEDYEQAAAHIHRYLCLDKSVIELSRQGKEGSM 548
RLYQAIQRADDILDLKFCMDGVQTALRNEDYEQAAAHIHRYLCLDKSVIELSRQGKEGSM
Sbjct: 121 RLYQAIQRADDILDLKFCMDGVQTALRNEDYEQAAAHIHRYLCLDKSVIELSRQGKEGSM 180
Query: 549 IDANLKLLQEAEQRLKAIVTEKFAIATKEGDLPQVERFFKIFPLLGLHEDGLSKFSEYLC 728
IDANLKLLQEAEQRLKAIV EKFAIATKEGDLPQVERFFKIFPLLGLHEDGLSKFSEYLC
Sbjct: 181 IDANLKLLQEAEQRLKAIVAEKFAIATKEGDLPQVERFFKIFPLLGLHEDGLSKFSEYLC 240
Query: 729 KQVASKAEENLLLVLGTDMSDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRLY 908
KQVASKAEENLLLVLG+DMSDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRL+
Sbjct: 241 KQVASKAEENLLLVLGSDMSDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRLF 300
Query: 909 TLIKYLQVECDRQ 947
TLIKYLQVECD Q
Sbjct: 301 TLIKYLQVECDTQ 313
Score = 33.5 bits (75), Expect(2) = e-162
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +1
Query: 946 RVEKVVDKFIKQRDYH 993
+VEKVV+KFIKQRDYH
Sbjct: 313 QVEKVVNKFIKQRDYH 328
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,020,479
Number of extensions: 789636
Number of successful extensions: 2615
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2615
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003379
(993 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361886.1| PREDICTED: conserved oligomeric Golgi comple... 246 2e-65
Alignment gi|XP_003362029.1| PREDICTED: conserved oligomeric Golgi comple... 206 2e-53
>ref|XP_003361886.1| PREDICTED: conserved oligomeric Golgi complex subunit 4-like,
partial [Sus scrofa].
Length = 123
Score = 246 bits (627), Expect = 2e-65
Identities = 123/123 (100%), Positives = 123/123 (100%)
Frame = +3
Query: 366 NRLYQAIQRADDILDLKFCMDGVQTALRNEDYEQAAAHIHRYLCLDKSVIELSRQGKEGS 545
NRLYQAIQRADDILDLKFCMDGVQTALRNEDYEQAAAHIHRYLCLDKSVIELSRQGKEGS
Sbjct: 1 NRLYQAIQRADDILDLKFCMDGVQTALRNEDYEQAAAHIHRYLCLDKSVIELSRQGKEGS 60
Query: 546 MIDANLKLLQEAEQRLKAIVTEKFAIATKEGDLPQVERFFKIFPLLGLHEDGLSKFSEYL 725
MIDANLKLLQEAEQRLKAIVTEKFAIATKEGDLPQVERFFKIFPLLGLHEDGLSKFSEYL
Sbjct: 61 MIDANLKLLQEAEQRLKAIVTEKFAIATKEGDLPQVERFFKIFPLLGLHEDGLSKFSEYL 120
Query: 726 CKQ 734
CKQ
Sbjct: 121 CKQ 123
>ref|XP_003362029.1| PREDICTED: conserved oligomeric Golgi complex subunit 4-like,
partial [Sus scrofa].
Length = 123
Score = 206 bits (524), Expect = 2e-53
Identities = 109/121 (90%), Positives = 109/121 (90%)
Frame = +3
Query: 3 IKMADLDSPQKLSXXXXXXXXXXXXRCSEISTELIRSLTELQELEAVYERLCGEEKVVER 182
IKMADLDSPQKLS RCSEISTELIRSLTELQELEAVYERLCGEEKVVER
Sbjct: 3 IKMADLDSPQKLSGVPPPPEGVGGGRCSEISTELIRSLTELQELEAVYERLCGEEKVVER 62
Query: 183 ELDALLEQQNTIESKMVTLHRMGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLA 362
ELDALLEQQNTIESKMVTLHRMGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLA
Sbjct: 63 ELDALLEQQNTIESKMVTLHRMGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLA 122
Query: 363 K 365
K
Sbjct: 123 K 123
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,861,850
Number of extensions: 586258
Number of successful extensions: 1839
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1838
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003379
(993 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL895812.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 392 e-106
gb|GL896221.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 329 2e-87
gb|GL894187.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 291 4e-76
>gb|GL895812.1| Sus scrofa unplaced genomic scaffold chrU_scaffold434
Length = 3006
Score = 392 bits (198), Expect = e-106
Identities = 198/198 (100%)
Strand = Plus / Plus
Query: 539 aggcagcatgattgatgccaacctgaaattgctgcaggaagctgagcagcgtctcaaagc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2103 aggcagcatgattgatgccaacctgaaattgctgcaggaagctgagcagcgtctcaaagc 2162
Query: 599 cattgtcacagagaagtttgccattgcaactaaggaaggggatctgccccaggtggagcg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2163 cattgtcacagagaagtttgccattgcaactaaggaaggggatctgccccaggtggagcg 2222
Query: 659 cttcttcaagatcttcccactgctgggtttgcatgaggacggactaagcaagttctcaga 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2223 cttcttcaagatcttcccactgctgggtttgcatgaggacggactaagcaagttctcaga 2282
Query: 719 atacctttgcaagcaggt 736
||||||||||||||||||
Sbjct: 2283 atacctttgcaagcaggt 2300
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 364 agaatcgcctctatcaagccattcagagagctgatgacatcttggacctgaagttctgca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 agaatcgcctctatcaagccattcagagagctgatgacatcttggacctgaagttctgca 483
Query: 424 tggatggggttcagactgctttgagaaatgaagattatgagcaggctgcagcccacattc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tggatggggttcagactgctttgagaaatgaagattatgagcaggctgcagcccacattc 543
Query: 484 atcgctacttgtgcctggacaagtcagttatagagctcagccgacagggcaaagaagg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 atcgctacttgtgcctggacaagtcagttatagagctcagccgacagggcaaagaagg 601
>gb|GL896221.1| Sus scrofa unplaced genomic scaffold chrU_scaffold583
Length = 40895
Score = 329 bits (166), Expect = 2e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 2 aatcaagatggcggacctcgattctcctcagaagctgtcaggggtgcctccgccgcctga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4467 aatcaagatggcggacctcgattctcctcagaagctgtcaggggtgcctccgccgcctga 4408
Query: 62 aggcgtgggaggaggccgctgctcggaaatctccacagagctcattcgctctctgactga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4407 aggcgtgggaggaggccgctgctcggaaatctccacagagctcattcgctctctgactga 4348
Query: 122 gcttcaggagctggaggctgtgtacgaacggctctgcggcgaggag 167
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4347 gcttcaggagctggaggctgtgtacgaacggctctgcggcgaggag 4302
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 250 gtcccaacctgcagttgattgaaggagatgcaaagcagctggctggaatgatcaccttca 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1684 gtcccaacctgcagttgattgaaggagatgcaaagcagctggctggaatgatcaccttca 1625
Query: 310 cctgcaacctagctgagaatgtgtccagtaaagtccgtcagcttgacttggccaag 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1624 cctgcaacctagctgagaatgtgtccagtaaagtccgtcagcttgacttggccaag 1569
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 166 agaaagtggtggagagagagctggatgctctcttggaacagcaaaacaccattgaaagta 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2735 agaaagtggtggagagagagctggatgctctcttggaacagcaaaacaccattgaaagta 2676
Query: 226 aaatggtcactctccaccggatggg 250
|||||||||||||||||||||||||
Sbjct: 2675 aaatggtcactctccaccggatggg 2651
>gb|GL894187.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2878
Length = 42667
Score = 291 bits (147), Expect = 4e-76
Identities = 154/155 (99%), Gaps = 1/155 (0%)
Strand = Plus / Plus
Query: 839 agggattgcccgaattgtggagacccatcaaccaatagtggaaacctattatgggccagg 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2334 agggattgcccgaattgtggagacccatcaaccaatagtggaaacctattatgggccagg 2393
Query: 899 gagactttacaccctgataaaatatcttcaggtggaatgtgacagacagggtggagaagg 958
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2394 gagactttacaccctgataaaatatcttcaggtggaatgtgacagaca-ggtggagaagg 2452
Query: 959 tggtagacaagttcatcaagcagagggactaccat 993
|||||||||||||||||||||||||||||||||||
Sbjct: 2453 tggtagacaagttcatcaagcagagggactaccat 2487
Score = 218 bits (110), Expect = 4e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 732 caggtggccagtaaagctgaggagaatctactcttggttctcgggacagatatgagcgat 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1718 caggtggccagtaaagctgaggagaatctactcttggttctcgggacagatatgagcgat 1777
Query: 792 cgaagagctgcagtcatctttgcagatacactcactcttctgtttgaagg 841
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1778 cgaagagctgcagtcatctttgcagatacactcactcttctgtttgaagg 1827
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,435,603
Number of extensions: 156
Number of successful extensions: 156
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 7
Length of query: 993
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 972
Effective length of database: 2,808,413,156
Effective search space: 2729777587632
Effective search space used: 2729777587632
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)