Animal-Genome cDNA 20110601C-003380


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003380
         (1129 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_002691320.1| PREDICTED: family with sequence similarity 1...    84   2e-16
Alignment   gi|XP_607432.4| PREDICTED: family with sequence similarity 176,...    84   2e-16
Alignment   gi|NP_001185956.1| hypothetical protein LOC516536 [Bos taurus].       62   9e-10
Alignment   gi|XP_002684628.1| PREDICTED: chromosome 21 open reading frame ...    62   9e-10
Alignment   gi|NP_001094741.1| hypothetical protein LOC618094 [Bos taurus].       61   2e-09

>ref|XP_002691320.1| PREDICTED: family with sequence similarity 176, member A-like [Bos
           taurus].
          Length = 97

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 48/98 (48%), Positives = 49/98 (50%)
 Frame = +1

Query: 487 MRISCHTDCRQPPQKKFLQXXXXXXXXXXXXXXXXXXXXXXXXXRHRRFERTLNKNVFTS 666
           MRISCHTDC Q  QK FL+                         RHRRFERTLNKNVFTS
Sbjct: 1   MRISCHTDCCQHSQK-FLKDQESSSNSSDSEDGSLDAASDISVRRHRRFERTLNKNVFTS 59

Query: 667 XXXXXXXXXXXXXXXXXXXXWMNGQPEVPGTRSLNRYY 780
                               WMNGQPEVPGTRSLNRYY
Sbjct: 60  VEELERAQRLEERERIIREIWMNGQPEVPGTRSLNRYY 97


>ref|XP_607432.4| PREDICTED: family with sequence similarity 176, member A-like [Bos
           taurus].
          Length = 97

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 48/98 (48%), Positives = 49/98 (50%)
 Frame = +1

Query: 487 MRISCHTDCRQPPQKKFLQXXXXXXXXXXXXXXXXXXXXXXXXXRHRRFERTLNKNVFTS 666
           MRISCHTDC Q  QK FL+                         RHRRFERTLNKNVFTS
Sbjct: 1   MRISCHTDCCQHSQK-FLKDQESSSNSSDSEDGSLDAASDISVRRHRRFERTLNKNVFTS 59

Query: 667 XXXXXXXXXXXXXXXXXXXXWMNGQPEVPGTRSLNRYY 780
                               WMNGQPEVPGTRSLNRYY
Sbjct: 60  VEELERAQRLEERERIIREIWMNGQPEVPGTRSLNRYY 97


>ref|NP_001185956.1| hypothetical protein LOC516536 [Bos taurus].
          Length = 441

 Score = 62.0 bits (149), Expect = 9e-10
 Identities = 28/53 (52%), Positives = 41/53 (77%)
 Frame = +1

Query: 361 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCRQ 519
           D  ++S+ LAA++++  +PERAAL FVS VC+GL LTL ALV+R+SC  D ++
Sbjct: 301 DGVIVSHSLAAFAYIRAHPERAALLFVSSVCVGLALTLCALVIRVSCTKDFQE 353


>ref|XP_002684628.1| PREDICTED: chromosome 21 open reading frame 63 ortholog [Bos
           taurus].
          Length = 441

 Score = 62.0 bits (149), Expect = 9e-10
 Identities = 28/53 (52%), Positives = 41/53 (77%)
 Frame = +1

Query: 361 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCRQ 519
           D  ++S+ LAA++++  +PERAAL FVS VC+GL LTL ALV+R+SC  D ++
Sbjct: 301 DGVIVSHSLAAFAYIRAHPERAALLFVSSVCVGLALTLCALVIRVSCTKDFQE 353


>ref|NP_001094741.1| hypothetical protein LOC618094 [Bos taurus].
          Length = 168

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 30/47 (63%), Positives = 34/47 (72%)
 Frame = +1

Query: 361 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISC 501
           DM LLSN LAAY+ +  NPE   LYFV GVC GL+LTL  LV+ ISC
Sbjct: 7   DMELLSNSLAAYAHIRANPESFGLYFVLGVCFGLLLTLCLLVISISC 53


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,064,232
Number of extensions: 1133161
Number of successful extensions: 3695
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3688
Number of HSP's successfully gapped: 5
Length of query: 376
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,240,222
Effective search space: 3873340384
Effective search space used: 3873340384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003380
         (1129 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_540210.1| PREDICTED: hypothetical protein XP_540210 [Cani...   136   4e-32
Alignment   gi|XP_535579.2| PREDICTED: similar to Protein C21orf63 precurso...    65   1e-10

>ref|XP_540210.1| PREDICTED: hypothetical protein XP_540210 [Canis familiaris].
          Length = 170

 Score =  136 bits (342), Expect = 4e-32
 Identities = 72/125 (57%), Positives = 76/125 (60%)
 Frame = +1

Query: 406 SENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCRQPPQKKFLQXXXXXXXXXXXXXX 585
           +ENPERAALYFVSGVCIGLVLTLAALVMR+SC TDCR  P+KKFLQ              
Sbjct: 46  AENPERAALYFVSGVCIGLVLTLAALVMRLSCRTDCRPRPRKKFLQDRGSSSDSSDSEDG 105

Query: 586 XXXXXXXXXXXRHRRFERTLNKNVFTSXXXXXXXXXXXXXXXXXXXXWMNGQPEVPGTRS 765
                      RHRRFERTLNKNVFTS                    WMNGQP+ PGTRS
Sbjct: 106 SSDTASDISVRRHRRFERTLNKNVFTSAEELERAQRLEERERIIREIWMNGQPDGPGTRS 165

Query: 766 LNRYY 780
           LNRYY
Sbjct: 166 LNRYY 170


>ref|XP_535579.2| PREDICTED: similar to Protein C21orf63 precursor (SUE21) isoform 2
           [Canis familiaris].
          Length = 441

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 31/52 (59%), Positives = 40/52 (76%)
 Frame = +1

Query: 361 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCR 516
           D  ++SN LAA++++  +PERAAL FVS VCIGL LTL ALV+R+SC  D R
Sbjct: 301 DGVIVSNSLAAFAYIRAHPERAALLFVSSVCIGLALTLCALVIRVSCVKDLR 352


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,942,334
Number of extensions: 1167923
Number of successful extensions: 3626
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3621
Number of HSP's successfully gapped: 2
Length of query: 376
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 272
Effective length of database: 15,407,560
Effective search space: 4190856320
Effective search space used: 4190856320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003380
         (1129 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_115557.1| family with sequence similarity 176, member A [...   178   7e-45
Alignment   gi|NP_001128504.1| family with sequence similarity 176, member ...   178   7e-45
Alignment   gi|NP_478067.2| hypothetical protein LOC59271 precursor [Homo s...    63   4e-10
Alignment   gi|NP_060636.1| hypothetical protein LOC55194 [Homo sapiens].         62   1e-09

>ref|NP_115557.1| family with sequence similarity 176, member A [Homo sapiens].
          Length = 152

 Score =  178 bits (452), Expect = 7e-45
 Identities = 97/156 (62%), Positives = 102/156 (65%)
 Frame = +1

Query: 313 RLPFCYNAELVIPEHVDMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMR 492
           RLP  ++     PEHV+MALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALV+R
Sbjct: 2   RLPLSHS-----PEHVEMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVIR 56

Query: 493 ISCHTDCRQPPQKKFLQXXXXXXXXXXXXXXXXXXXXXXXXXRHRRFERTLNKNVFTSXX 672
           ISCHTDCR+ P KKFLQ                         RHRRFERTLNKNVFTS  
Sbjct: 57  ISCHTDCRRRPGKKFLQDRESSSDSSDSEDGSEDTVSDLSVRRHRRFERTLNKNVFTSAE 116

Query: 673 XXXXXXXXXXXXXXXXXXWMNGQPEVPGTRSLNRYY 780
                             WMNGQPEVPGTRSLNRYY
Sbjct: 117 ELERAQRLEERERIIREIWMNGQPEVPGTRSLNRYY 152


>ref|NP_001128504.1| family with sequence similarity 176, member A [Homo sapiens].
          Length = 152

 Score =  178 bits (452), Expect = 7e-45
 Identities = 97/156 (62%), Positives = 102/156 (65%)
 Frame = +1

Query: 313 RLPFCYNAELVIPEHVDMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMR 492
           RLP  ++     PEHV+MALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALV+R
Sbjct: 2   RLPLSHS-----PEHVEMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVIR 56

Query: 493 ISCHTDCRQPPQKKFLQXXXXXXXXXXXXXXXXXXXXXXXXXRHRRFERTLNKNVFTSXX 672
           ISCHTDCR+ P KKFLQ                         RHRRFERTLNKNVFTS  
Sbjct: 57  ISCHTDCRRRPGKKFLQDRESSSDSSDSEDGSEDTVSDLSVRRHRRFERTLNKNVFTSAE 116

Query: 673 XXXXXXXXXXXXXXXXXXWMNGQPEVPGTRSLNRYY 780
                             WMNGQPEVPGTRSLNRYY
Sbjct: 117 ELERAQRLEERERIIREIWMNGQPEVPGTRSLNRYY 152


>ref|NP_478067.2| hypothetical protein LOC59271 precursor [Homo sapiens].
          Length = 441

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 32/52 (61%), Positives = 39/52 (75%)
 Frame = +1

Query: 361 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCR 516
           D  L+SN LAA++++  +PERAAL FVS VCIGL LTL ALV+R SC  D R
Sbjct: 301 DGILVSNSLAAFAYIRAHPERAALLFVSSVCIGLALTLCALVIRESCAKDFR 352


>ref|NP_060636.1| hypothetical protein LOC55194 [Homo sapiens].
          Length = 165

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 46/143 (32%), Positives = 57/143 (39%), Gaps = 7/143 (4%)
 Frame = +1

Query: 361 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISC-------HTDCRQ 519
           DM LLSN LAAY+ +  NPE   LYFV GVC GL+LTL  LV+ IS            R+
Sbjct: 7   DMELLSNSLAAYAHIRANPESFGLYFVLGVCFGLLLTLCLLVISISWAPRPRPRGPAQRR 66

Query: 520 PPQKKFLQXXXXXXXXXXXXXXXXXXXXXXXXXRHRRFERTLNKNVFTSXXXXXXXXXXX 699
            P+   L+                              +  LN NVFTS           
Sbjct: 67  DPRSSTLEPEDDDEDEEDTVTRLGPDDTLPGPELSAEPDGPLNVNVFTSAEELERAQRLE 126

Query: 700 XXXXXXXXXWMNGQPEVPGTRSL 768
                    W  GQP++ GT +L
Sbjct: 127 ERERILREIWRTGQPDLLGTGTL 149


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,968,982
Number of extensions: 1136822
Number of successful extensions: 3383
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3379
Number of HSP's successfully gapped: 4
Length of query: 376
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,868,908
Effective search space: 4044342976
Effective search space used: 4044342976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003380
         (1129 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_663545.2| transmembrane protein 166 [Mus musculus].            160   2e-39
Alignment   gi|NP_001186139.1| hypothetical protein LOC70967 isoform 1 [Mus...    65   1e-10
Alignment   gi|NP_081903.1| hypothetical protein LOC70967 isoform 2 [Mus mu...    65   1e-10
Alignment   gi|NP_742157.1| hypothetical protein LOC230752 [Mus musculus].        61   1e-09

>ref|NP_663545.2| transmembrane protein 166 [Mus musculus].
          Length = 156

 Score =  160 bits (404), Expect = 2e-39
 Identities = 88/156 (56%), Positives = 99/156 (63%)
 Frame = +1

Query: 313 RLPFCYNAELVIPEHVDMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMR 492
           +LP   + E V  E + MALLS+ILAA+S++SENPERAALYFVSGVCIGL LTLAALVMR
Sbjct: 2   KLPLSPSTEPVATEPLGMALLSSILAAWSYISENPERAALYFVSGVCIGLFLTLAALVMR 61

Query: 493 ISCHTDCRQPPQKKFLQXXXXXXXXXXXXXXXXXXXXXXXXXRHRRFERTLNKNVFTSXX 672
           ISCHTDCR+ P+++ LQ                         RHRRFERTLNKNVFTS  
Sbjct: 62  ISCHTDCRRGPRRRCLQ-DRECSDSSDSEDGSEDTASDLSVRRHRRFERTLNKNVFTSAE 120

Query: 673 XXXXXXXXXXXXXXXXXXWMNGQPEVPGTRSLNRYY 780
                             WMNGQPEVPGTRSLNRYY
Sbjct: 121 ELERAQRLEERERIIREIWMNGQPEVPGTRSLNRYY 156


>ref|NP_001186139.1| hypothetical protein LOC70967 isoform 1 [Mus musculus].
          Length = 440

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 30/53 (56%), Positives = 42/53 (79%)
 Frame = +1

Query: 361 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCRQ 519
           D  ++SN LAA++++  +PERAAL F+S VCIGL+LTL ALV+R+SC  D R+
Sbjct: 300 DGVIVSNSLAAFAYIRAHPERAALLFMSSVCIGLLLTLCALVIRVSCTKDFRE 352


>ref|NP_081903.1| hypothetical protein LOC70967 isoform 2 [Mus musculus].
          Length = 392

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 30/53 (56%), Positives = 42/53 (79%)
 Frame = +1

Query: 361 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCRQ 519
           D  ++SN LAA++++  +PERAAL F+S VCIGL+LTL ALV+R+SC  D R+
Sbjct: 252 DGVIVSNSLAAFAYIRAHPERAALLFMSSVCIGLLLTLCALVIRVSCTKDFRE 304


>ref|NP_742157.1| hypothetical protein LOC230752 [Mus musculus].
          Length = 164

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 30/47 (63%), Positives = 34/47 (72%)
 Frame = +1

Query: 361 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISC 501
           DM LLSN LAAY+ +  NPE   LYFV GVC GL+LTL  LV+ ISC
Sbjct: 7   DMELLSNSLAAYAHIRANPESFGLYFVLGVCFGLLLTLCLLVISISC 53


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,343,541
Number of extensions: 941123
Number of successful extensions: 2788
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2782
Number of HSP's successfully gapped: 4
Length of query: 376
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 273
Effective length of database: 12,523,851
Effective search space: 3419011323
Effective search space used: 3419011323
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003380
         (1129 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003125029.2| PREDICTED: protein FAM176A-like isoform 2 [S...   172   4e-43
Alignment   gi|XP_003358978.1| PREDICTED: uncharacterized protein C21orf63 ...    63   3e-10
Alignment   gi|XP_003354804.1| PREDICTED: GC-rich sequence DNA-binding fact...    59   5e-09

>ref|XP_003125029.2| PREDICTED: protein FAM176A-like isoform 2 [Sus scrofa].
          Length = 141

 Score =  172 bits (435), Expect = 4e-43
 Identities = 99/141 (70%), Positives = 99/141 (70%), Gaps = 2/141 (1%)
 Frame = +1

Query: 364 MALLSNILAAYSFVSENPERAALY--FVSGVCIGLVLTLAALVMRISCHTDCRQPPQKKF 537
           MALLSNILAAYSFVSENPERAALY  FVSGVCIGLVLTLAALVMRISCHTDCRQPPQKKF
Sbjct: 1   MALLSNILAAYSFVSENPERAALYXYFVSGVCIGLVLTLAALVMRISCHTDCRQPPQKKF 60

Query: 538 LQXXXXXXXXXXXXXXXXXXXXXXXXXRHRRFERTLNKNVFTSXXXXXXXXXXXXXXXXX 717
           LQ                         RHRRFERTLNKNVFTS                 
Sbjct: 61  LQDRESSSNSSDSEDGXXXXXSDISIRRHRRFERTLNKNVFTSAEELERAQRLEERERII 120

Query: 718 XXXWMNGQPEVPGTRSLNRYY 780
              WMNGQPEVPGTRSLNRYY
Sbjct: 121 REIWMNGQPEVPGTRSLNRYY 141


>ref|XP_003358978.1| PREDICTED: uncharacterized protein C21orf63 homolog [Sus scrofa].
          Length = 451

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 30/53 (56%), Positives = 41/53 (77%)
 Frame = +1

Query: 361 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCRQ 519
           D  ++S+ LAA++++  +PERAAL FVS VCIGL LTL ALV+R+SC  D R+
Sbjct: 311 DGVIVSHSLAAFAYLRAHPERAALLFVSSVCIGLALTLCALVIRVSCTKDFRE 363


>ref|XP_003354804.1| PREDICTED: GC-rich sequence DNA-binding factor-like [Sus scrofa].
          Length = 415

 Score = 58.9 bits (141), Expect = 5e-09
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = -1

Query: 310 MGHPEEASWRCFSWIKLATLPLFSS 236
           MGHPEEASWRCFSWIKLATLPLFSS
Sbjct: 1   MGHPEEASWRCFSWIKLATLPLFSS 25


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,522,715
Number of extensions: 732841
Number of successful extensions: 2408
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2405
Number of HSP's successfully gapped: 3
Length of query: 376
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 275
Effective length of database: 8,829,335
Effective search space: 2428067125
Effective search space used: 2428067125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003380
         (1129 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL896025.2| Sus scrofa unplaced genomic scaffold ChrUScaf3909     1041   0.0  
Sscrofa_Chr03                                                         470   e-130

>gb|GL896025.2| Sus scrofa unplaced genomic scaffold ChrUScaf3909
          Length = 21554

 Score = 1041 bits (525), Expect = 0.0
 Identities = 528/529 (99%)
 Strand = Plus / Minus

                                                                        
Query: 601  tccgacatctcgatccggagacatcgccgcttcgagaggactttgaacaagaacgtcttc 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9046 tccgacatctcgatccggagacatcgccgcttcgagaggactttgaacaagaacgtcttc 8987

                                                                        
Query: 661  acctcagcggaagagctggagcgcgcccagaggctggaggagcgggaacgcatcatcagg 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8986 acctcagcggaagagctggagcgcgcccagaggctggaggagcgggaacgcatcatcagg 8927

                                                                        
Query: 721  gaaatttggatgaatggccagccggaagttcccggcaccagaagcctgaaccgttactac 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8926 gaaatttggatgaatggccagccggaagttcccggcaccagaagcctgaaccgttactac 8867

                                                                        
Query: 781  taggggctgggtcaggacccccgcaccgctgttagcctcctgggagacaaagggtccccc 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8866 taggggctgggtcaggacccccgcaccgctgttagcctcctgggagacaaagggtccccc 8807

                                                                        
Query: 841  cagggagggtggccacaaaaagcccaacgcggttctgctattgctaagggccgcagagag 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8806 cagggagggtggccacaaaaagcccaacgcggttctgctattgctaagggccgcagagag 8747

                                                                        
Query: 901  gagcgggacacccccattttctagccagaaggattgatttcacccttttagactcaattt 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8746 gagcgggacacccccattttctagccagaaggattgatttcacccttttagactcaattt 8687

                                                                        
Query: 961  atggagacgtagaaaaaccaagttgtttcatcaacctttccaggtgctgaaaacccgctc 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8686 atggagacgtagaaaaaccaagttgtttcatcaacctttccaggtgctgaaaacccgctc 8627

                                                                        
Query: 1021 cgctccaacactgtggatggagatgcgagaaatggaattgtggtttctcttgatttctga 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8626 cgctccaacactgtggatggagatgcgagaaatggaattgtggtttctcttgatttctga 8567

                                                             
Query: 1081 ggctctcgggcggtttttcagacttcactgcgatgtgttatttctttgc 1129
            |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 8566 ggctctcgggcgttttttcagacttcactgcgatgtgttatttctttgc 8518



 Score =  321 bits (162), Expect = 5e-85
 Identities = 179/185 (96%), Gaps = 6/185 (3%)
 Strand = Plus / Minus

                                                                        
Query: 407  cagaaaatcccgagcgagcagctttgtact------ttgtctctggcgtgtgcatcgggc 460
            ||||||||||||||||||||||||||||||      ||||||||||||||||||||||||
Sbjct: 9331 cagaaaatcccgagcgagcagctttgtactnntactttgtctctggcgtgtgcatcgggc 9272

                                                                        
Query: 461  tggtcctcaccctggctgccttggtgatgaggatctcttgccacacagactgccggcagc 520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9271 tggtcctcaccctggctgccttggtgatgaggatctcttgccacacagactgccggcagc 9212

                                                                        
Query: 521  ctccccagaagaagttcctgcaggaccgagaaagcagcagcaacagcagcgacagtgagg 580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9211 ctccccagaagaagttcctgcaggaccgagaaagcagcagcaacagcagcgacagtgagg 9152

                 
Query: 581  atggc 585
            |||||
Sbjct: 9151 atggc 9147


>Sscrofa_Chr03 
||          Length = 144787322

 Score =  470 bits (237), Expect = e-130
 Identities = 237/237 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        gtgattagagggatgatggactatgcctcagaggcaaaccagggagaatgcaatgaaaag 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71150911 gtgattagagggatgatggactatgcctcagaggcaaaccagggagaatgcaatgaaaag 71150970

                                                                            
Query: 61       tatcaaggaaaggtgaaggagaagtgttaaaaagggaattttggagaagatgaggaagaa 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71150971 tatcaaggaaaggtgaaggagaagtgttaaaaagggaattttggagaagatgaggaagaa 71151030

                                                                            
Query: 121      aaaggagagaggctagagaaaaacagatttaaggggtcgctgtttccttgaaagccaaga 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71151031 aaaggagagaggctagagaaaaacagatttaaggggtcgctgtttccttgaaagccaaga 71151090

                                                                         
Query: 181      agcttgtagagcaaagaggacaagatcccagatctttgcagccacctggctgagaag 237
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71151091 agcttgtagagcaaagaggacaagatcccagatctttgcagccacctggctgagaag 71151147



 Score =  337 bits (170), Expect = 8e-90
 Identities = 173/174 (99%)
 Strand = Plus / Plus

                                                                            
Query: 236      agaagagaagagagggagggtggccaacttgatccagctgaagcatctccaggaggcctc 295
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71151256 agaagagaagagagggagggtggccaacttgatccagctgaagcatctccaggaggcctc 71151315

                                                                            
Query: 296      ctctggatgtcccatcgaggctgcccttctgctacaacgcggaattggtgatccccgagc 355
                |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 71151316 ctctggatgtcccatcgaggctgctcttctgctacaacgcggaattggtgatccccgagc 71151375

                                                                      
Query: 356      acgtggacatggctttgctcagcaatatcctagcagcctattcctttgtctcag 409
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71151376 acgtggacatggctttgctcagcaatatcctagcagcctattcctttgtctcag 71151429


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,706,092
Number of extensions: 461
Number of successful extensions: 461
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 5
Length of query: 1129
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1108
Effective length of database: 2,808,413,156
Effective search space: 3111721776848
Effective search space used: 3111721776848
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)