Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003380
(1129 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002691320.1| PREDICTED: family with sequence similarity 1... 84 2e-16
Alignment gi|XP_607432.4| PREDICTED: family with sequence similarity 176,... 84 2e-16
Alignment gi|NP_001185956.1| hypothetical protein LOC516536 [Bos taurus]. 62 9e-10
Alignment gi|XP_002684628.1| PREDICTED: chromosome 21 open reading frame ... 62 9e-10
Alignment gi|NP_001094741.1| hypothetical protein LOC618094 [Bos taurus]. 61 2e-09
>ref|XP_002691320.1| PREDICTED: family with sequence similarity 176, member A-like [Bos
taurus].
Length = 97
Score = 84.3 bits (207), Expect = 2e-16
Identities = 48/98 (48%), Positives = 49/98 (50%)
Frame = +1
Query: 487 MRISCHTDCRQPPQKKFLQXXXXXXXXXXXXXXXXXXXXXXXXXRHRRFERTLNKNVFTS 666
MRISCHTDC Q QK FL+ RHRRFERTLNKNVFTS
Sbjct: 1 MRISCHTDCCQHSQK-FLKDQESSSNSSDSEDGSLDAASDISVRRHRRFERTLNKNVFTS 59
Query: 667 XXXXXXXXXXXXXXXXXXXXWMNGQPEVPGTRSLNRYY 780
WMNGQPEVPGTRSLNRYY
Sbjct: 60 VEELERAQRLEERERIIREIWMNGQPEVPGTRSLNRYY 97
>ref|XP_607432.4| PREDICTED: family with sequence similarity 176, member A-like [Bos
taurus].
Length = 97
Score = 84.3 bits (207), Expect = 2e-16
Identities = 48/98 (48%), Positives = 49/98 (50%)
Frame = +1
Query: 487 MRISCHTDCRQPPQKKFLQXXXXXXXXXXXXXXXXXXXXXXXXXRHRRFERTLNKNVFTS 666
MRISCHTDC Q QK FL+ RHRRFERTLNKNVFTS
Sbjct: 1 MRISCHTDCCQHSQK-FLKDQESSSNSSDSEDGSLDAASDISVRRHRRFERTLNKNVFTS 59
Query: 667 XXXXXXXXXXXXXXXXXXXXWMNGQPEVPGTRSLNRYY 780
WMNGQPEVPGTRSLNRYY
Sbjct: 60 VEELERAQRLEERERIIREIWMNGQPEVPGTRSLNRYY 97
>ref|NP_001185956.1| hypothetical protein LOC516536 [Bos taurus].
Length = 441
Score = 62.0 bits (149), Expect = 9e-10
Identities = 28/53 (52%), Positives = 41/53 (77%)
Frame = +1
Query: 361 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCRQ 519
D ++S+ LAA++++ +PERAAL FVS VC+GL LTL ALV+R+SC D ++
Sbjct: 301 DGVIVSHSLAAFAYIRAHPERAALLFVSSVCVGLALTLCALVIRVSCTKDFQE 353
>ref|XP_002684628.1| PREDICTED: chromosome 21 open reading frame 63 ortholog [Bos
taurus].
Length = 441
Score = 62.0 bits (149), Expect = 9e-10
Identities = 28/53 (52%), Positives = 41/53 (77%)
Frame = +1
Query: 361 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCRQ 519
D ++S+ LAA++++ +PERAAL FVS VC+GL LTL ALV+R+SC D ++
Sbjct: 301 DGVIVSHSLAAFAYIRAHPERAALLFVSSVCVGLALTLCALVIRVSCTKDFQE 353
>ref|NP_001094741.1| hypothetical protein LOC618094 [Bos taurus].
Length = 168
Score = 61.2 bits (147), Expect = 2e-09
Identities = 30/47 (63%), Positives = 34/47 (72%)
Frame = +1
Query: 361 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISC 501
DM LLSN LAAY+ + NPE LYFV GVC GL+LTL LV+ ISC
Sbjct: 7 DMELLSNSLAAYAHIRANPESFGLYFVLGVCFGLLLTLCLLVISISC 53
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,064,232
Number of extensions: 1133161
Number of successful extensions: 3695
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3688
Number of HSP's successfully gapped: 5
Length of query: 376
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,240,222
Effective search space: 3873340384
Effective search space used: 3873340384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003380
(1129 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540210.1| PREDICTED: hypothetical protein XP_540210 [Cani... 136 4e-32
Alignment gi|XP_535579.2| PREDICTED: similar to Protein C21orf63 precurso... 65 1e-10
>ref|XP_540210.1| PREDICTED: hypothetical protein XP_540210 [Canis familiaris].
Length = 170
Score = 136 bits (342), Expect = 4e-32
Identities = 72/125 (57%), Positives = 76/125 (60%)
Frame = +1
Query: 406 SENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCRQPPQKKFLQXXXXXXXXXXXXXX 585
+ENPERAALYFVSGVCIGLVLTLAALVMR+SC TDCR P+KKFLQ
Sbjct: 46 AENPERAALYFVSGVCIGLVLTLAALVMRLSCRTDCRPRPRKKFLQDRGSSSDSSDSEDG 105
Query: 586 XXXXXXXXXXXRHRRFERTLNKNVFTSXXXXXXXXXXXXXXXXXXXXWMNGQPEVPGTRS 765
RHRRFERTLNKNVFTS WMNGQP+ PGTRS
Sbjct: 106 SSDTASDISVRRHRRFERTLNKNVFTSAEELERAQRLEERERIIREIWMNGQPDGPGTRS 165
Query: 766 LNRYY 780
LNRYY
Sbjct: 166 LNRYY 170
>ref|XP_535579.2| PREDICTED: similar to Protein C21orf63 precursor (SUE21) isoform 2
[Canis familiaris].
Length = 441
Score = 65.1 bits (157), Expect = 1e-10
Identities = 31/52 (59%), Positives = 40/52 (76%)
Frame = +1
Query: 361 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCR 516
D ++SN LAA++++ +PERAAL FVS VCIGL LTL ALV+R+SC D R
Sbjct: 301 DGVIVSNSLAAFAYIRAHPERAALLFVSSVCIGLALTLCALVIRVSCVKDLR 352
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,942,334
Number of extensions: 1167923
Number of successful extensions: 3626
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3621
Number of HSP's successfully gapped: 2
Length of query: 376
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 272
Effective length of database: 15,407,560
Effective search space: 4190856320
Effective search space used: 4190856320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003380
(1129 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115557.1| family with sequence similarity 176, member A [... 178 7e-45
Alignment gi|NP_001128504.1| family with sequence similarity 176, member ... 178 7e-45
Alignment gi|NP_478067.2| hypothetical protein LOC59271 precursor [Homo s... 63 4e-10
Alignment gi|NP_060636.1| hypothetical protein LOC55194 [Homo sapiens]. 62 1e-09
>ref|NP_115557.1| family with sequence similarity 176, member A [Homo sapiens].
Length = 152
Score = 178 bits (452), Expect = 7e-45
Identities = 97/156 (62%), Positives = 102/156 (65%)
Frame = +1
Query: 313 RLPFCYNAELVIPEHVDMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMR 492
RLP ++ PEHV+MALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALV+R
Sbjct: 2 RLPLSHS-----PEHVEMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVIR 56
Query: 493 ISCHTDCRQPPQKKFLQXXXXXXXXXXXXXXXXXXXXXXXXXRHRRFERTLNKNVFTSXX 672
ISCHTDCR+ P KKFLQ RHRRFERTLNKNVFTS
Sbjct: 57 ISCHTDCRRRPGKKFLQDRESSSDSSDSEDGSEDTVSDLSVRRHRRFERTLNKNVFTSAE 116
Query: 673 XXXXXXXXXXXXXXXXXXWMNGQPEVPGTRSLNRYY 780
WMNGQPEVPGTRSLNRYY
Sbjct: 117 ELERAQRLEERERIIREIWMNGQPEVPGTRSLNRYY 152
>ref|NP_001128504.1| family with sequence similarity 176, member A [Homo sapiens].
Length = 152
Score = 178 bits (452), Expect = 7e-45
Identities = 97/156 (62%), Positives = 102/156 (65%)
Frame = +1
Query: 313 RLPFCYNAELVIPEHVDMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMR 492
RLP ++ PEHV+MALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALV+R
Sbjct: 2 RLPLSHS-----PEHVEMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVIR 56
Query: 493 ISCHTDCRQPPQKKFLQXXXXXXXXXXXXXXXXXXXXXXXXXRHRRFERTLNKNVFTSXX 672
ISCHTDCR+ P KKFLQ RHRRFERTLNKNVFTS
Sbjct: 57 ISCHTDCRRRPGKKFLQDRESSSDSSDSEDGSEDTVSDLSVRRHRRFERTLNKNVFTSAE 116
Query: 673 XXXXXXXXXXXXXXXXXXWMNGQPEVPGTRSLNRYY 780
WMNGQPEVPGTRSLNRYY
Sbjct: 117 ELERAQRLEERERIIREIWMNGQPEVPGTRSLNRYY 152
>ref|NP_478067.2| hypothetical protein LOC59271 precursor [Homo sapiens].
Length = 441
Score = 63.2 bits (152), Expect = 4e-10
Identities = 32/52 (61%), Positives = 39/52 (75%)
Frame = +1
Query: 361 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCR 516
D L+SN LAA++++ +PERAAL FVS VCIGL LTL ALV+R SC D R
Sbjct: 301 DGILVSNSLAAFAYIRAHPERAALLFVSSVCIGLALTLCALVIRESCAKDFR 352
>ref|NP_060636.1| hypothetical protein LOC55194 [Homo sapiens].
Length = 165
Score = 61.6 bits (148), Expect = 1e-09
Identities = 46/143 (32%), Positives = 57/143 (39%), Gaps = 7/143 (4%)
Frame = +1
Query: 361 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISC-------HTDCRQ 519
DM LLSN LAAY+ + NPE LYFV GVC GL+LTL LV+ IS R+
Sbjct: 7 DMELLSNSLAAYAHIRANPESFGLYFVLGVCFGLLLTLCLLVISISWAPRPRPRGPAQRR 66
Query: 520 PPQKKFLQXXXXXXXXXXXXXXXXXXXXXXXXXRHRRFERTLNKNVFTSXXXXXXXXXXX 699
P+ L+ + LN NVFTS
Sbjct: 67 DPRSSTLEPEDDDEDEEDTVTRLGPDDTLPGPELSAEPDGPLNVNVFTSAEELERAQRLE 126
Query: 700 XXXXXXXXXWMNGQPEVPGTRSL 768
W GQP++ GT +L
Sbjct: 127 ERERILREIWRTGQPDLLGTGTL 149
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,968,982
Number of extensions: 1136822
Number of successful extensions: 3383
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3379
Number of HSP's successfully gapped: 4
Length of query: 376
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,868,908
Effective search space: 4044342976
Effective search space used: 4044342976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003380
(1129 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663545.2| transmembrane protein 166 [Mus musculus]. 160 2e-39
Alignment gi|NP_001186139.1| hypothetical protein LOC70967 isoform 1 [Mus... 65 1e-10
Alignment gi|NP_081903.1| hypothetical protein LOC70967 isoform 2 [Mus mu... 65 1e-10
Alignment gi|NP_742157.1| hypothetical protein LOC230752 [Mus musculus]. 61 1e-09
>ref|NP_663545.2| transmembrane protein 166 [Mus musculus].
Length = 156
Score = 160 bits (404), Expect = 2e-39
Identities = 88/156 (56%), Positives = 99/156 (63%)
Frame = +1
Query: 313 RLPFCYNAELVIPEHVDMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMR 492
+LP + E V E + MALLS+ILAA+S++SENPERAALYFVSGVCIGL LTLAALVMR
Sbjct: 2 KLPLSPSTEPVATEPLGMALLSSILAAWSYISENPERAALYFVSGVCIGLFLTLAALVMR 61
Query: 493 ISCHTDCRQPPQKKFLQXXXXXXXXXXXXXXXXXXXXXXXXXRHRRFERTLNKNVFTSXX 672
ISCHTDCR+ P+++ LQ RHRRFERTLNKNVFTS
Sbjct: 62 ISCHTDCRRGPRRRCLQ-DRECSDSSDSEDGSEDTASDLSVRRHRRFERTLNKNVFTSAE 120
Query: 673 XXXXXXXXXXXXXXXXXXWMNGQPEVPGTRSLNRYY 780
WMNGQPEVPGTRSLNRYY
Sbjct: 121 ELERAQRLEERERIIREIWMNGQPEVPGTRSLNRYY 156
>ref|NP_001186139.1| hypothetical protein LOC70967 isoform 1 [Mus musculus].
Length = 440
Score = 65.1 bits (157), Expect = 1e-10
Identities = 30/53 (56%), Positives = 42/53 (79%)
Frame = +1
Query: 361 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCRQ 519
D ++SN LAA++++ +PERAAL F+S VCIGL+LTL ALV+R+SC D R+
Sbjct: 300 DGVIVSNSLAAFAYIRAHPERAALLFMSSVCIGLLLTLCALVIRVSCTKDFRE 352
>ref|NP_081903.1| hypothetical protein LOC70967 isoform 2 [Mus musculus].
Length = 392
Score = 65.1 bits (157), Expect = 1e-10
Identities = 30/53 (56%), Positives = 42/53 (79%)
Frame = +1
Query: 361 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCRQ 519
D ++SN LAA++++ +PERAAL F+S VCIGL+LTL ALV+R+SC D R+
Sbjct: 252 DGVIVSNSLAAFAYIRAHPERAALLFMSSVCIGLLLTLCALVIRVSCTKDFRE 304
>ref|NP_742157.1| hypothetical protein LOC230752 [Mus musculus].
Length = 164
Score = 61.2 bits (147), Expect = 1e-09
Identities = 30/47 (63%), Positives = 34/47 (72%)
Frame = +1
Query: 361 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISC 501
DM LLSN LAAY+ + NPE LYFV GVC GL+LTL LV+ ISC
Sbjct: 7 DMELLSNSLAAYAHIRANPESFGLYFVLGVCFGLLLTLCLLVISISC 53
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,343,541
Number of extensions: 941123
Number of successful extensions: 2788
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2782
Number of HSP's successfully gapped: 4
Length of query: 376
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 273
Effective length of database: 12,523,851
Effective search space: 3419011323
Effective search space used: 3419011323
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003380
(1129 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125029.2| PREDICTED: protein FAM176A-like isoform 2 [S... 172 4e-43
Alignment gi|XP_003358978.1| PREDICTED: uncharacterized protein C21orf63 ... 63 3e-10
Alignment gi|XP_003354804.1| PREDICTED: GC-rich sequence DNA-binding fact... 59 5e-09
>ref|XP_003125029.2| PREDICTED: protein FAM176A-like isoform 2 [Sus scrofa].
Length = 141
Score = 172 bits (435), Expect = 4e-43
Identities = 99/141 (70%), Positives = 99/141 (70%), Gaps = 2/141 (1%)
Frame = +1
Query: 364 MALLSNILAAYSFVSENPERAALY--FVSGVCIGLVLTLAALVMRISCHTDCRQPPQKKF 537
MALLSNILAAYSFVSENPERAALY FVSGVCIGLVLTLAALVMRISCHTDCRQPPQKKF
Sbjct: 1 MALLSNILAAYSFVSENPERAALYXYFVSGVCIGLVLTLAALVMRISCHTDCRQPPQKKF 60
Query: 538 LQXXXXXXXXXXXXXXXXXXXXXXXXXRHRRFERTLNKNVFTSXXXXXXXXXXXXXXXXX 717
LQ RHRRFERTLNKNVFTS
Sbjct: 61 LQDRESSSNSSDSEDGXXXXXSDISIRRHRRFERTLNKNVFTSAEELERAQRLEERERII 120
Query: 718 XXXWMNGQPEVPGTRSLNRYY 780
WMNGQPEVPGTRSLNRYY
Sbjct: 121 REIWMNGQPEVPGTRSLNRYY 141
>ref|XP_003358978.1| PREDICTED: uncharacterized protein C21orf63 homolog [Sus scrofa].
Length = 451
Score = 63.2 bits (152), Expect = 3e-10
Identities = 30/53 (56%), Positives = 41/53 (77%)
Frame = +1
Query: 361 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCRQ 519
D ++S+ LAA++++ +PERAAL FVS VCIGL LTL ALV+R+SC D R+
Sbjct: 311 DGVIVSHSLAAFAYLRAHPERAALLFVSSVCIGLALTLCALVIRVSCTKDFRE 363
>ref|XP_003354804.1| PREDICTED: GC-rich sequence DNA-binding factor-like [Sus scrofa].
Length = 415
Score = 58.9 bits (141), Expect = 5e-09
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -1
Query: 310 MGHPEEASWRCFSWIKLATLPLFSS 236
MGHPEEASWRCFSWIKLATLPLFSS
Sbjct: 1 MGHPEEASWRCFSWIKLATLPLFSS 25
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,522,715
Number of extensions: 732841
Number of successful extensions: 2408
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2405
Number of HSP's successfully gapped: 3
Length of query: 376
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 275
Effective length of database: 8,829,335
Effective search space: 2428067125
Effective search space used: 2428067125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003380
(1129 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896025.2| Sus scrofa unplaced genomic scaffold ChrUScaf3909 1041 0.0
Sscrofa_Chr03 470 e-130
>gb|GL896025.2| Sus scrofa unplaced genomic scaffold ChrUScaf3909
Length = 21554
Score = 1041 bits (525), Expect = 0.0
Identities = 528/529 (99%)
Strand = Plus / Minus
Query: 601 tccgacatctcgatccggagacatcgccgcttcgagaggactttgaacaagaacgtcttc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9046 tccgacatctcgatccggagacatcgccgcttcgagaggactttgaacaagaacgtcttc 8987
Query: 661 acctcagcggaagagctggagcgcgcccagaggctggaggagcgggaacgcatcatcagg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8986 acctcagcggaagagctggagcgcgcccagaggctggaggagcgggaacgcatcatcagg 8927
Query: 721 gaaatttggatgaatggccagccggaagttcccggcaccagaagcctgaaccgttactac 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8926 gaaatttggatgaatggccagccggaagttcccggcaccagaagcctgaaccgttactac 8867
Query: 781 taggggctgggtcaggacccccgcaccgctgttagcctcctgggagacaaagggtccccc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8866 taggggctgggtcaggacccccgcaccgctgttagcctcctgggagacaaagggtccccc 8807
Query: 841 cagggagggtggccacaaaaagcccaacgcggttctgctattgctaagggccgcagagag 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8806 cagggagggtggccacaaaaagcccaacgcggttctgctattgctaagggccgcagagag 8747
Query: 901 gagcgggacacccccattttctagccagaaggattgatttcacccttttagactcaattt 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8746 gagcgggacacccccattttctagccagaaggattgatttcacccttttagactcaattt 8687
Query: 961 atggagacgtagaaaaaccaagttgtttcatcaacctttccaggtgctgaaaacccgctc 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8686 atggagacgtagaaaaaccaagttgtttcatcaacctttccaggtgctgaaaacccgctc 8627
Query: 1021 cgctccaacactgtggatggagatgcgagaaatggaattgtggtttctcttgatttctga 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8626 cgctccaacactgtggatggagatgcgagaaatggaattgtggtttctcttgatttctga 8567
Query: 1081 ggctctcgggcggtttttcagacttcactgcgatgtgttatttctttgc 1129
|||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 8566 ggctctcgggcgttttttcagacttcactgcgatgtgttatttctttgc 8518
Score = 321 bits (162), Expect = 5e-85
Identities = 179/185 (96%), Gaps = 6/185 (3%)
Strand = Plus / Minus
Query: 407 cagaaaatcccgagcgagcagctttgtact------ttgtctctggcgtgtgcatcgggc 460
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 9331 cagaaaatcccgagcgagcagctttgtactnntactttgtctctggcgtgtgcatcgggc 9272
Query: 461 tggtcctcaccctggctgccttggtgatgaggatctcttgccacacagactgccggcagc 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9271 tggtcctcaccctggctgccttggtgatgaggatctcttgccacacagactgccggcagc 9212
Query: 521 ctccccagaagaagttcctgcaggaccgagaaagcagcagcaacagcagcgacagtgagg 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9211 ctccccagaagaagttcctgcaggaccgagaaagcagcagcaacagcagcgacagtgagg 9152
Query: 581 atggc 585
|||||
Sbjct: 9151 atggc 9147
>Sscrofa_Chr03
|| Length = 144787322
Score = 470 bits (237), Expect = e-130
Identities = 237/237 (100%)
Strand = Plus / Plus
Query: 1 gtgattagagggatgatggactatgcctcagaggcaaaccagggagaatgcaatgaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71150911 gtgattagagggatgatggactatgcctcagaggcaaaccagggagaatgcaatgaaaag 71150970
Query: 61 tatcaaggaaaggtgaaggagaagtgttaaaaagggaattttggagaagatgaggaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71150971 tatcaaggaaaggtgaaggagaagtgttaaaaagggaattttggagaagatgaggaagaa 71151030
Query: 121 aaaggagagaggctagagaaaaacagatttaaggggtcgctgtttccttgaaagccaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71151031 aaaggagagaggctagagaaaaacagatttaaggggtcgctgtttccttgaaagccaaga 71151090
Query: 181 agcttgtagagcaaagaggacaagatcccagatctttgcagccacctggctgagaag 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71151091 agcttgtagagcaaagaggacaagatcccagatctttgcagccacctggctgagaag 71151147
Score = 337 bits (170), Expect = 8e-90
Identities = 173/174 (99%)
Strand = Plus / Plus
Query: 236 agaagagaagagagggagggtggccaacttgatccagctgaagcatctccaggaggcctc 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71151256 agaagagaagagagggagggtggccaacttgatccagctgaagcatctccaggaggcctc 71151315
Query: 296 ctctggatgtcccatcgaggctgcccttctgctacaacgcggaattggtgatccccgagc 355
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 71151316 ctctggatgtcccatcgaggctgctcttctgctacaacgcggaattggtgatccccgagc 71151375
Query: 356 acgtggacatggctttgctcagcaatatcctagcagcctattcctttgtctcag 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71151376 acgtggacatggctttgctcagcaatatcctagcagcctattcctttgtctcag 71151429
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,706,092
Number of extensions: 461
Number of successful extensions: 461
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 5
Length of query: 1129
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1108
Effective length of database: 2,808,413,156
Effective search space: 3111721776848
Effective search space used: 3111721776848
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)