Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003382
(1030 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002691320.1| PREDICTED: family with sequence similarity 1... 84 2e-16
Alignment gi|XP_607432.4| PREDICTED: family with sequence similarity 176,... 84 2e-16
Alignment gi|NP_001185956.1| hypothetical protein LOC516536 [Bos taurus]. 62 8e-10
Alignment gi|XP_002684628.1| PREDICTED: chromosome 21 open reading frame ... 62 8e-10
Alignment gi|NP_001094741.1| hypothetical protein LOC618094 [Bos taurus]. 61 1e-09
>ref|XP_002691320.1| PREDICTED: family with sequence similarity 176, member A-like [Bos
taurus].
Length = 97
Score = 84.3 bits (207), Expect = 2e-16
Identities = 48/98 (48%), Positives = 49/98 (50%)
Frame = +2
Query: 632 MRISCHTDCRQPPQKKFLQXXXXXXXXXXXXXXXXXXXXXXXXXRHRRFERTLNKNVFTS 811
MRISCHTDC Q QK FL+ RHRRFERTLNKNVFTS
Sbjct: 1 MRISCHTDCCQHSQK-FLKDQESSSNSSDSEDGSLDAASDISVRRHRRFERTLNKNVFTS 59
Query: 812 XXXXXXXXXXXXXXXXXXXXWMNGQPEVPGTRSLNRYY 925
WMNGQPEVPGTRSLNRYY
Sbjct: 60 VEELERAQRLEERERIIREIWMNGQPEVPGTRSLNRYY 97
>ref|XP_607432.4| PREDICTED: family with sequence similarity 176, member A-like [Bos
taurus].
Length = 97
Score = 84.3 bits (207), Expect = 2e-16
Identities = 48/98 (48%), Positives = 49/98 (50%)
Frame = +2
Query: 632 MRISCHTDCRQPPQKKFLQXXXXXXXXXXXXXXXXXXXXXXXXXRHRRFERTLNKNVFTS 811
MRISCHTDC Q QK FL+ RHRRFERTLNKNVFTS
Sbjct: 1 MRISCHTDCCQHSQK-FLKDQESSSNSSDSEDGSLDAASDISVRRHRRFERTLNKNVFTS 59
Query: 812 XXXXXXXXXXXXXXXXXXXXWMNGQPEVPGTRSLNRYY 925
WMNGQPEVPGTRSLNRYY
Sbjct: 60 VEELERAQRLEERERIIREIWMNGQPEVPGTRSLNRYY 97
>ref|NP_001185956.1| hypothetical protein LOC516536 [Bos taurus].
Length = 441
Score = 62.0 bits (149), Expect = 8e-10
Identities = 28/53 (52%), Positives = 41/53 (77%)
Frame = +2
Query: 506 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCRQ 664
D ++S+ LAA++++ +PERAAL FVS VC+GL LTL ALV+R+SC D ++
Sbjct: 301 DGVIVSHSLAAFAYIRAHPERAALLFVSSVCVGLALTLCALVIRVSCTKDFQE 353
>ref|XP_002684628.1| PREDICTED: chromosome 21 open reading frame 63 ortholog [Bos
taurus].
Length = 441
Score = 62.0 bits (149), Expect = 8e-10
Identities = 28/53 (52%), Positives = 41/53 (77%)
Frame = +2
Query: 506 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCRQ 664
D ++S+ LAA++++ +PERAAL FVS VC+GL LTL ALV+R+SC D ++
Sbjct: 301 DGVIVSHSLAAFAYIRAHPERAALLFVSSVCVGLALTLCALVIRVSCTKDFQE 353
>ref|NP_001094741.1| hypothetical protein LOC618094 [Bos taurus].
Length = 168
Score = 61.2 bits (147), Expect = 1e-09
Identities = 30/47 (63%), Positives = 34/47 (72%)
Frame = +2
Query: 506 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISC 646
DM LLSN LAAY+ + NPE LYFV GVC GL+LTL LV+ ISC
Sbjct: 7 DMELLSNSLAAYAHIRANPESFGLYFVLGVCFGLLLTLCLLVISISC 53
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,526,148
Number of extensions: 1420935
Number of successful extensions: 7501
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7391
Number of HSP's successfully gapped: 5
Length of query: 343
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,273,310
Effective search space: 3425594400
Effective search space used: 3425594400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003382
(1030 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540210.1| PREDICTED: hypothetical protein XP_540210 [Cani... 136 4e-32
Alignment gi|XP_535579.2| PREDICTED: similar to Protein C21orf63 precurso... 65 1e-10
>ref|XP_540210.1| PREDICTED: hypothetical protein XP_540210 [Canis familiaris].
Length = 170
Score = 136 bits (342), Expect = 4e-32
Identities = 72/125 (57%), Positives = 76/125 (60%)
Frame = +2
Query: 551 SENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCRQPPQKKFLQXXXXXXXXXXXXXX 730
+ENPERAALYFVSGVCIGLVLTLAALVMR+SC TDCR P+KKFLQ
Sbjct: 46 AENPERAALYFVSGVCIGLVLTLAALVMRLSCRTDCRPRPRKKFLQDRGSSSDSSDSEDG 105
Query: 731 XXXXXXXXXXXRHRRFERTLNKNVFTSXXXXXXXXXXXXXXXXXXXXWMNGQPEVPGTRS 910
RHRRFERTLNKNVFTS WMNGQP+ PGTRS
Sbjct: 106 SSDTASDISVRRHRRFERTLNKNVFTSAEELERAQRLEERERIIREIWMNGQPDGPGTRS 165
Query: 911 LNRYY 925
LNRYY
Sbjct: 166 LNRYY 170
>ref|XP_535579.2| PREDICTED: similar to Protein C21orf63 precursor (SUE21) isoform 2
[Canis familiaris].
Length = 441
Score = 65.1 bits (157), Expect = 1e-10
Identities = 31/52 (59%), Positives = 40/52 (76%)
Frame = +2
Query: 506 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCR 661
D ++SN LAA++++ +PERAAL FVS VCIGL LTL ALV+R+SC D R
Sbjct: 301 DGVIVSNSLAAFAYIRAHPERAALLFVSSVCIGLALTLCALVIRVSCVKDLR 352
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,459,730
Number of extensions: 1467978
Number of successful extensions: 7552
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7449
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 239
Effective length of database: 15,407,560
Effective search space: 3682406840
Effective search space used: 3682406840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003382
(1030 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115557.1| family with sequence similarity 176, member A [... 178 6e-45
Alignment gi|NP_001128504.1| family with sequence similarity 176, member ... 178 6e-45
Alignment gi|NP_478067.2| hypothetical protein LOC59271 precursor [Homo s... 63 4e-10
Alignment gi|NP_060636.1| hypothetical protein LOC55194 [Homo sapiens]. 62 1e-09
>ref|NP_115557.1| family with sequence similarity 176, member A [Homo sapiens].
Length = 152
Score = 178 bits (452), Expect = 6e-45
Identities = 97/156 (62%), Positives = 102/156 (65%)
Frame = +2
Query: 458 RLPFCYNAELVIPEHVDMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMR 637
RLP ++ PEHV+MALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALV+R
Sbjct: 2 RLPLSHS-----PEHVEMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVIR 56
Query: 638 ISCHTDCRQPPQKKFLQXXXXXXXXXXXXXXXXXXXXXXXXXRHRRFERTLNKNVFTSXX 817
ISCHTDCR+ P KKFLQ RHRRFERTLNKNVFTS
Sbjct: 57 ISCHTDCRRRPGKKFLQDRESSSDSSDSEDGSEDTVSDLSVRRHRRFERTLNKNVFTSAE 116
Query: 818 XXXXXXXXXXXXXXXXXXWMNGQPEVPGTRSLNRYY 925
WMNGQPEVPGTRSLNRYY
Sbjct: 117 ELERAQRLEERERIIREIWMNGQPEVPGTRSLNRYY 152
>ref|NP_001128504.1| family with sequence similarity 176, member A [Homo sapiens].
Length = 152
Score = 178 bits (452), Expect = 6e-45
Identities = 97/156 (62%), Positives = 102/156 (65%)
Frame = +2
Query: 458 RLPFCYNAELVIPEHVDMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMR 637
RLP ++ PEHV+MALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALV+R
Sbjct: 2 RLPLSHS-----PEHVEMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVIR 56
Query: 638 ISCHTDCRQPPQKKFLQXXXXXXXXXXXXXXXXXXXXXXXXXRHRRFERTLNKNVFTSXX 817
ISCHTDCR+ P KKFLQ RHRRFERTLNKNVFTS
Sbjct: 57 ISCHTDCRRRPGKKFLQDRESSSDSSDSEDGSEDTVSDLSVRRHRRFERTLNKNVFTSAE 116
Query: 818 XXXXXXXXXXXXXXXXXXWMNGQPEVPGTRSLNRYY 925
WMNGQPEVPGTRSLNRYY
Sbjct: 117 ELERAQRLEERERIIREIWMNGQPEVPGTRSLNRYY 152
>ref|NP_478067.2| hypothetical protein LOC59271 precursor [Homo sapiens].
Length = 441
Score = 63.2 bits (152), Expect = 4e-10
Identities = 32/52 (61%), Positives = 39/52 (75%)
Frame = +2
Query: 506 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCR 661
D L+SN LAA++++ +PERAAL FVS VCIGL LTL ALV+R SC D R
Sbjct: 301 DGILVSNSLAAFAYIRAHPERAALLFVSSVCIGLALTLCALVIRESCAKDFR 352
>ref|NP_060636.1| hypothetical protein LOC55194 [Homo sapiens].
Length = 165
Score = 61.6 bits (148), Expect = 1e-09
Identities = 46/143 (32%), Positives = 57/143 (39%), Gaps = 7/143 (4%)
Frame = +2
Query: 506 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISC-------HTDCRQ 664
DM LLSN LAAY+ + NPE LYFV GVC GL+LTL LV+ IS R+
Sbjct: 7 DMELLSNSLAAYAHIRANPESFGLYFVLGVCFGLLLTLCLLVISISWAPRPRPRGPAQRR 66
Query: 665 PPQKKFLQXXXXXXXXXXXXXXXXXXXXXXXXXRHRRFERTLNKNVFTSXXXXXXXXXXX 844
P+ L+ + LN NVFTS
Sbjct: 67 DPRSSTLEPEDDDEDEEDTVTRLGPDDTLPGPELSAEPDGPLNVNVFTSAEELERAQRLE 126
Query: 845 XXXXXXXXXWMNGQPEVPGTRSL 913
W GQP++ GT +L
Sbjct: 127 ERERILREIWRTGQPDLLGTGTL 149
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,341,346
Number of extensions: 1416480
Number of successful extensions: 6809
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6708
Number of HSP's successfully gapped: 4
Length of query: 343
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,901,872
Effective search space: 3576449280
Effective search space used: 3576449280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003382
(1030 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663545.2| transmembrane protein 166 [Mus musculus]. 160 2e-39
Alignment gi|NP_001186139.1| hypothetical protein LOC70967 isoform 1 [Mus... 65 9e-11
Alignment gi|NP_081903.1| hypothetical protein LOC70967 isoform 2 [Mus mu... 65 9e-11
Alignment gi|NP_742157.1| hypothetical protein LOC230752 [Mus musculus]. 61 1e-09
>ref|NP_663545.2| transmembrane protein 166 [Mus musculus].
Length = 156
Score = 160 bits (404), Expect = 2e-39
Identities = 88/156 (56%), Positives = 99/156 (63%)
Frame = +2
Query: 458 RLPFCYNAELVIPEHVDMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMR 637
+LP + E V E + MALLS+ILAA+S++SENPERAALYFVSGVCIGL LTLAALVMR
Sbjct: 2 KLPLSPSTEPVATEPLGMALLSSILAAWSYISENPERAALYFVSGVCIGLFLTLAALVMR 61
Query: 638 ISCHTDCRQPPQKKFLQXXXXXXXXXXXXXXXXXXXXXXXXXRHRRFERTLNKNVFTSXX 817
ISCHTDCR+ P+++ LQ RHRRFERTLNKNVFTS
Sbjct: 62 ISCHTDCRRGPRRRCLQ-DRECSDSSDSEDGSEDTASDLSVRRHRRFERTLNKNVFTSAE 120
Query: 818 XXXXXXXXXXXXXXXXXXWMNGQPEVPGTRSLNRYY 925
WMNGQPEVPGTRSLNRYY
Sbjct: 121 ELERAQRLEERERIIREIWMNGQPEVPGTRSLNRYY 156
>ref|NP_001186139.1| hypothetical protein LOC70967 isoform 1 [Mus musculus].
Length = 440
Score = 65.1 bits (157), Expect = 9e-11
Identities = 30/53 (56%), Positives = 42/53 (79%)
Frame = +2
Query: 506 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCRQ 664
D ++SN LAA++++ +PERAAL F+S VCIGL+LTL ALV+R+SC D R+
Sbjct: 300 DGVIVSNSLAAFAYIRAHPERAALLFMSSVCIGLLLTLCALVIRVSCTKDFRE 352
>ref|NP_081903.1| hypothetical protein LOC70967 isoform 2 [Mus musculus].
Length = 392
Score = 65.1 bits (157), Expect = 9e-11
Identities = 30/53 (56%), Positives = 42/53 (79%)
Frame = +2
Query: 506 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCRQ 664
D ++SN LAA++++ +PERAAL F+S VCIGL+LTL ALV+R+SC D R+
Sbjct: 252 DGVIVSNSLAAFAYIRAHPERAALLFMSSVCIGLLLTLCALVIRVSCTKDFRE 304
>ref|NP_742157.1| hypothetical protein LOC230752 [Mus musculus].
Length = 164
Score = 61.2 bits (147), Expect = 1e-09
Identities = 30/47 (63%), Positives = 34/47 (72%)
Frame = +2
Query: 506 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISC 646
DM LLSN LAAY+ + NPE LYFV GVC GL+LTL LV+ ISC
Sbjct: 7 DMELLSNSLAAYAHIRANPESFGLYFVLGVCFGLLLTLCLLVISISC 53
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,149,007
Number of extensions: 1157786
Number of successful extensions: 5173
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5118
Number of HSP's successfully gapped: 4
Length of query: 343
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 241
Effective length of database: 12,553,887
Effective search space: 3025486767
Effective search space used: 3025486767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003382
(1030 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125029.2| PREDICTED: protein FAM176A-like isoform 2 [S... 172 4e-43
Alignment gi|XP_003358978.1| PREDICTED: uncharacterized protein C21orf63 ... 63 2e-10
Alignment gi|XP_003354804.1| PREDICTED: GC-rich sequence DNA-binding fact... 59 4e-09
>ref|XP_003125029.2| PREDICTED: protein FAM176A-like isoform 2 [Sus scrofa].
Length = 141
Score = 172 bits (435), Expect = 4e-43
Identities = 99/141 (70%), Positives = 99/141 (70%), Gaps = 2/141 (1%)
Frame = +2
Query: 509 MALLSNILAAYSFVSENPERAALY--FVSGVCIGLVLTLAALVMRISCHTDCRQPPQKKF 682
MALLSNILAAYSFVSENPERAALY FVSGVCIGLVLTLAALVMRISCHTDCRQPPQKKF
Sbjct: 1 MALLSNILAAYSFVSENPERAALYXYFVSGVCIGLVLTLAALVMRISCHTDCRQPPQKKF 60
Query: 683 LQXXXXXXXXXXXXXXXXXXXXXXXXXRHRRFERTLNKNVFTSXXXXXXXXXXXXXXXXX 862
LQ RHRRFERTLNKNVFTS
Sbjct: 61 LQDRESSSNSSDSEDGXXXXXSDISIRRHRRFERTLNKNVFTSAEELERAQRLEERERII 120
Query: 863 XXXWMNGQPEVPGTRSLNRYY 925
WMNGQPEVPGTRSLNRYY
Sbjct: 121 REIWMNGQPEVPGTRSLNRYY 141
>ref|XP_003358978.1| PREDICTED: uncharacterized protein C21orf63 homolog [Sus scrofa].
Length = 451
Score = 63.2 bits (152), Expect = 2e-10
Identities = 30/53 (56%), Positives = 41/53 (77%)
Frame = +2
Query: 506 DMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCRQ 664
D ++S+ LAA++++ +PERAAL FVS VCIGL LTL ALV+R+SC D R+
Sbjct: 311 DGVIVSHSLAAFAYLRAHPERAALLFVSSVCIGLALTLCALVIRVSCTKDFRE 363
>ref|XP_003354804.1| PREDICTED: GC-rich sequence DNA-binding factor-like [Sus scrofa].
Length = 415
Score = 58.9 bits (141), Expect = 4e-09
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -3
Query: 455 MGHPEEASWRCFSWIKLATLPLFSS 381
MGHPEEASWRCFSWIKLATLPLFSS
Sbjct: 1 MGHPEEASWRCFSWIKLATLPLFSS 25
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,168,168
Number of extensions: 923737
Number of successful extensions: 5145
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4954
Number of HSP's successfully gapped: 3
Length of query: 343
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 243
Effective length of database: 8,854,232
Effective search space: 2151578376
Effective search space used: 2151578376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003382
(1030 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 527 e-147
gb|GL896025.2| Sus scrofa unplaced genomic scaffold ChrUScaf3909 519 e-145
>Sscrofa_Chr03
|| Length = 144787322
Score = 527 bits (266), Expect = e-147
Identities = 273/274 (99%), Gaps = 1/274 (0%)
Strand = Plus / Minus
Query: 3 aatgagaca-ccttttcctcccactgactcgtgctcctgcagggtttgtggggttcgcca 61
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71027543 aatgagacaaccttttcctcccactgactcgtgctcctgcagggtttgtggggttcgcca 71027484
Query: 62 cggccgcccgtaagtgccgaggccgggaccccgaaccccacgcccggctcggcgggttct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71027483 cggccgcccgtaagtgccgaggccgggaccccgaaccccacgcccggctcggcgggttct 71027424
Query: 122 tcactgggatttctgtccgaggtgcaagtaccgggcccacgccctggccacagctttgtc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71027423 tcactgggatttctgtccgaggtgcaagtaccgggcccacgccctggccacagctttgtc 71027364
Query: 182 gcgtcctcccctttgtgatcggctcccgtccgggcctcggcccccagcaccccaacgcag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71027363 gcgtcctcccctttgtgatcggctcccgtccgggcctcggcccccagcaccccaacgcag 71027304
Query: 242 accccggaagtgcacgtcgtcggctctcgttaag 275
||||||||||||||||||||||||||||||||||
Sbjct: 71027303 accccggaagtgcacgtcgtcggctctcgttaag 71027270
Score = 335 bits (169), Expect = 3e-89
Identities = 172/173 (99%)
Strand = Plus / Plus
Query: 382 gaagagaagagagggagggtggccaacttgatccagctgaagcatctccaggaggcctcc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71151257 gaagagaagagagggagggtggccaacttgatccagctgaagcatctccaggaggcctcc 71151316
Query: 442 tctggatgtcccatcgaggctgcccttctgctacaacgcggaattggtgatccccgagca 501
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 71151317 tctggatgtcccatcgaggctgctcttctgctacaacgcggaattggtgatccccgagca 71151376
Query: 502 cgtggacatggctttgctcagcaatatcctagcagcctattcctttgtctcag 554
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71151377 cgtggacatggctttgctcagcaatatcctagcagcctattcctttgtctcag 71151429
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 274 agagcctgagaagctaactgaggccaatcacatttcagaatctccactgtctgataccag 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71143088 agagcctgagaagctaactgaggccaatcacatttcagaatctccactgtctgataccag 71143147
Query: 334 cggtgccaaggatgaactgttctaaccagatgcccctctactcttgatg 382
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71143148 cggtgccaaggatgaactgttctaaccagatgcccctctactcttgatg 71143196
>gb|GL896025.2| Sus scrofa unplaced genomic scaffold ChrUScaf3909
Length = 21554
Score = 519 bits (262), Expect = e-145
Identities = 281/286 (98%), Gaps = 1/286 (0%)
Strand = Plus / Minus
Query: 746 tccgacatctcgatccggagacatcgccgcttcgagaggactttgaacaagaacgtcttc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9046 tccgacatctcgatccggagacatcgccgcttcgagaggactttgaacaagaacgtcttc 8987
Query: 806 acctcagcggaagagctggagcgcgcccagaggctggaggagcgggaacgcatcatcagg 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8986 acctcagcggaagagctggagcgcgcccagaggctggaggagcgggaacgcatcatcagg 8927
Query: 866 gaaatttggatgaatggccagccggaagttcccggcaccagaagcctgaaccgttactac 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8926 gaaatttggatgaatggccagccggaagttcccggcaccagaagcctgaaccgttactac 8867
Query: 926 taggggctgggtcaggacccccgcaccgctgttagcctcctgggagacaaagggtc-ccc 984
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 8866 taggggctgggtcaggacccccgcaccgctgttagcctcctgggagacaaagggtccccc 8807
Query: 985 cagggaggggggccacaaaaagcccaacggcggtctgctattgcta 1030
||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct: 8806 cagggagggtggccacaaaaagcccaacgcggttctgctattgcta 8761
Score = 321 bits (162), Expect = 4e-85
Identities = 179/185 (96%), Gaps = 6/185 (3%)
Strand = Plus / Minus
Query: 552 cagaaaatcccgagcgagcagctttgtact------ttgtctctggcgtgtgcatcgggc 605
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 9331 cagaaaatcccgagcgagcagctttgtactnntactttgtctctggcgtgtgcatcgggc 9272
Query: 606 tggtcctcaccctggctgccttggtgatgaggatctcttgccacacagactgccggcagc 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9271 tggtcctcaccctggctgccttggtgatgaggatctcttgccacacagactgccggcagc 9212
Query: 666 ctccccagaagaagttcctgcaggaccgagaaagcagcagcaacagcagcgacagtgagg 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9211 ctccccagaagaagttcctgcaggaccgagaaagcagcagcaacagcagcgacagtgagg 9152
Query: 726 atggc 730
|||||
Sbjct: 9151 atggc 9147
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,623,647
Number of extensions: 309
Number of successful extensions: 309
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 6
Length of query: 1030
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1009
Effective length of database: 2,808,413,156
Effective search space: 2833688874404
Effective search space used: 2833688874404
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)