Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003387
(1398 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092471.1| cysteine desulfurase, mitochondrial [Bos tau... 798 0.0
Alignment gi|NP_001077273.1| selenocysteine lyase [Bos taurus]. 214 2e-55
Alignment gi|NP_776506.1| molybdenum cofactor sulfurase [Bos taurus]. 62 1e-09
>ref|NP_001092471.1| cysteine desulfurase, mitochondrial [Bos taurus].
Length = 457
Score = 798 bits (2062), Expect = 0.0
Identities = 404/420 (96%), Positives = 408/420 (97%)
Frame = +2
Query: 137 KSPTRGLRLRVVDHAPQSAVPSDAVTAPEAEPVLRPLYMDVQATTPLDPRVLDAMLPYLV 316
K P RGLRLR +D PQSAV SDA A EAE VLRPLYMDVQATTPLDPRVLDAMLPYLV
Sbjct: 23 KPPIRGLRLRGIDLTPQSAVASDAAIALEAESVLRPLYMDVQATTPLDPRVLDAMLPYLV 82
Query: 317 NYYGNPHSRTHAYGWESEAAMEHARQQVASLIGADPREIIFTSGATESNNIAIKGVARFY 496
NYYGNPHSRTHAYGWESEAAME ARQQVASLIGADPREIIFTSGATESNNIAIKGVARFY
Sbjct: 83 NYYGNPHSRTHAYGWESEAAMECARQQVASLIGADPREIIFTSGATESNNIAIKGVARFY 142
Query: 497 RSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPVKKSGIIDLKELEAAIRPDTSLVSV 676
RSRKKHLITTQTEHKCVLDSCRSLEAEGF+VTYLPVKKSGIIDLKELEAAI+PDTSLVSV
Sbjct: 143 RSRKKHLITTQTEHKCVLDSCRSLEAEGFKVTYLPVKKSGIIDLKELEAAIQPDTSLVSV 202
Query: 677 MTVNNEIGVKQPIAEIGRICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYGP 856
MTVNNEIGVKQPI EIG+ICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYGP
Sbjct: 203 MTVNNEIGVKQPIKEIGQICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYGP 262
Query: 857 KGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPLVVGLGAACEVAQQEMEYDHKRI 1036
KGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPLVVGLGAACEVAQQEMEYDHKRI
Sbjct: 263 KGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPLVVGLGAACEVAQQEMEYDHKRI 322
Query: 1037 SKLAERLIQKIMKSLPDVVMNGDPEHHYPGCINLSFAYVEGESLLMALKDVALSSGSACT 1216
SKLAERLIQKIMKSLPDVVMNGDPEHHYPGCINLSFAYVEGESLLMALKDVALSSGSACT
Sbjct: 323 SKLAERLIQKIMKSLPDVVMNGDPEHHYPGCINLSFAYVEGESLLMALKDVALSSGSACT 382
Query: 1217 SASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIHHVKRLREMSPLWEM 1396
SASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIHHVKRLREMSPLWEM
Sbjct: 383 SASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIHHVKRLREMSPLWEM 442
>ref|NP_001077273.1| selenocysteine lyase [Bos taurus].
Length = 437
Score = 214 bits (544), Expect = 2e-55
Identities = 141/421 (33%), Positives = 220/421 (52%), Gaps = 36/421 (8%)
Frame = +2
Query: 215 APEAEPVLRPLYMDVQATTPLDPRVLDAMLPYLVNYYGNPHSRTHAYGWESEAAMEHARQ 394
A ++ P R +YMD ATTPL+P V++AM + +GNP S ++ G +++ + AR+
Sbjct: 15 AEKSPPESRKVYMDYNATTPLEPEVIEAMTEAMREAWGNPSS-SYPAGRKAKEIINTARE 73
Query: 395 QVASLIGADPREIIFTSGATESNNIAIKGVARFYRS-----------------RKKHLIT 523
+A +IG P+++IFTSG TESNN+ I+ V + + H+IT
Sbjct: 74 NLAKMIGGQPQDVIFTSGGTESNNLVIQSVVKHFHKVHAANGDTGGHPNPVDGALPHIIT 133
Query: 524 TQTEHKCVLDSCRSLEAEGF-QVTYLPVKK-SGIIDLKELEAAIRPDTSLVSVMTVNNEI 697
EH + L E +VT++PV K +G ++ +++ AA+RP T LV++M NNE
Sbjct: 134 CTVEHDSIRLPLEHLREERVAEVTFVPVSKVNGQVEAEDILAAVRPATCLVTIMLANNET 193
Query: 698 GVKQPIAEIGRICSSRK----------VYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKI 847
GV P+ EI R + V HTDAAQA+GK +DV D+ +D ++I GHK
Sbjct: 194 GVIMPVPEISRRVRALNQQRVAGGLPGVLVHTDAAQALGKQRVDVRDLGVDFLTIVGHKF 253
Query: 848 YGPKGVGAIYIR-RRPRVRVEALQSGGGQERGMRSGTVPTPLVVGLGAACEVAQQEMEYD 1024
YGP+ +GA+Y+R + + GGGQER R GT TP++ GLG A E+ + E
Sbjct: 254 YGPR-IGALYVRGLGEHTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAELVAENGEAY 312
Query: 1025 HKRISKLAERLIQKIMKSLPD-VVMNGD--PEHHYPGCINLSF--AYVEGESLLMALKDV 1189
+ + + L +++ + + +N P N S ++G ++L + +
Sbjct: 313 EAHMRGVRDYLEERLAAEFGERIHLNSQFPGAERLPNTCNFSIRGPQLQGRAVLAQCRTL 372
Query: 1190 ALSSGSACTS-ASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIHHVKR 1366
S G+AC S PS VL + G D+A ++IR +GR +T EVD V+ V R
Sbjct: 373 LASVGAACHSDLGDRPSPVLLSCGVPVDVARNAIRLSVGRSSTRAEVDLVVQDLKQAVAR 432
Query: 1367 L 1369
L
Sbjct: 433 L 433
>ref|NP_776506.1| molybdenum cofactor sulfurase [Bos taurus].
Length = 849
Score = 62.0 bits (149), Expect = 1e-09
Identities = 65/256 (25%), Positives = 109/256 (42%), Gaps = 20/256 (7%)
Frame = +2
Query: 245 LYMDVQATTPL-DPRVLDAMLPYLVNYYGNPHSRTHAYGWESEAAMEHARQQVASLIGAD 421
+Y+D TT ++ M + N YGNPHS+ + + +E R ++ +
Sbjct: 17 VYLDHAGTTLFPQSQITSFMKDLMENVYGNPHSQNISSKLTHDT-VEQVRFRILAHFHTS 75
Query: 422 PRE--IIFTSGATESNNI---AIKGVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQ 586
P + +IFTSG+T + + A V+ H V+ R + A
Sbjct: 76 PEDYTVIFTSGSTAALKLVAEAFPWVSPGPEGSGSCFCYLTDSHTSVV-GMRKITA-AMN 133
Query: 587 VTYLPVKKSGIIDLKELEAAIRPDTS-----LVSVMTVNNEIGVKQPIAEIGRICSSR-- 745
V+ +PV+ + + +AA D + L +N G + P++ IG + S R
Sbjct: 134 VSSIPVRPEDMWSAERQDAAAAGDPAGQPPHLFCYPAQSNFSGTRYPLSWIGEVKSGRRR 193
Query: 746 ------KVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYG-PKGVGAIYIRRRPRVRV 904
K + DAA VG PLD++ + D + IS +KI+G P G+GA+ + R +
Sbjct: 194 PASRPGKWFVLLDAAAFVGTSPLDLSVHQADFVPISFYKIFGFPTGLGALLVNNRLAALL 253
Query: 905 EALQSGGGQERGMRSG 952
GGG +G
Sbjct: 254 RKTYFGGGTAAAYLAG 269
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,245,892
Number of extensions: 1602984
Number of successful extensions: 5667
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5652
Number of HSP's successfully gapped: 3
Length of query: 466
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 360
Effective length of database: 14,174,046
Effective search space: 5102656560
Effective search space used: 5102656560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003387
(1398 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534405.2| PREDICTED: similar to NFS1 nitrogen fixation 1 ... 818 0.0
Alignment gi|XP_534618.2| PREDICTED: similar to selenocysteine lyase [Can... 214 2e-55
Alignment gi|XP_547604.2| PREDICTED: similar to molybdenum cofactor sulfu... 58 2e-08
>ref|XP_534405.2| PREDICTED: similar to NFS1 nitrogen fixation 1 isoform a precursor
[Canis familiaris].
Length = 457
Score = 818 bits (2112), Expect = 0.0
Identities = 409/420 (97%), Positives = 415/420 (98%)
Frame = +2
Query: 137 KSPTRGLRLRVVDHAPQSAVPSDAVTAPEAEPVLRPLYMDVQATTPLDPRVLDAMLPYLV 316
++PTRGLRLRVVDHAPQSAVPSD TAP AE VLRPLYMDVQATTPLDPRVLDAMLPYLV
Sbjct: 23 EAPTRGLRLRVVDHAPQSAVPSDTATAPPAESVLRPLYMDVQATTPLDPRVLDAMLPYLV 82
Query: 317 NYYGNPHSRTHAYGWESEAAMEHARQQVASLIGADPREIIFTSGATESNNIAIKGVARFY 496
NYYGNPHSRTHAYGWESEAAMEHARQQVASLIGADPREIIFTSGATESNNIAIKGVARFY
Sbjct: 83 NYYGNPHSRTHAYGWESEAAMEHARQQVASLIGADPREIIFTSGATESNNIAIKGVARFY 142
Query: 497 RSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPVKKSGIIDLKELEAAIRPDTSLVSV 676
RSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPVKKSGIIDLKELE+AI+PDTSLVSV
Sbjct: 143 RSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPVKKSGIIDLKELESAIQPDTSLVSV 202
Query: 677 MTVNNEIGVKQPIAEIGRICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYGP 856
MTVNNEIGVKQPIAEIG+ICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYGP
Sbjct: 203 MTVNNEIGVKQPIAEIGQICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYGP 262
Query: 857 KGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPLVVGLGAACEVAQQEMEYDHKRI 1036
KGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPLVVGLGAACEVAQQEMEYDHKRI
Sbjct: 263 KGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPLVVGLGAACEVAQQEMEYDHKRI 322
Query: 1037 SKLAERLIQKIMKSLPDVVMNGDPEHHYPGCINLSFAYVEGESLLMALKDVALSSGSACT 1216
SKLA+RL QKIMKSLPDVVMNGDPEHHYPGCINLSFAYVEGESLLMALKDVALSSGSACT
Sbjct: 323 SKLADRLTQKIMKSLPDVVMNGDPEHHYPGCINLSFAYVEGESLLMALKDVALSSGSACT 382
Query: 1217 SASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIHHVKRLREMSPLWEM 1396
SASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIHHVKRLREMSPLWEM
Sbjct: 383 SASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIHHVKRLREMSPLWEM 442
>ref|XP_534618.2| PREDICTED: similar to selenocysteine lyase [Canis familiaris].
Length = 444
Score = 214 bits (545), Expect = 2e-55
Identities = 149/414 (35%), Positives = 219/414 (52%), Gaps = 37/414 (8%)
Frame = +2
Query: 239 RPLYMDVQATTPLDPRVLDAMLPYLVNYYGNPHSRTHAYGWESEAAMEHARQQVASLIGA 418
R +YMD ATTPL+P V+ AM + +GNP S A G +++ ++ AR+ +A +IG
Sbjct: 29 RKVYMDYNATTPLEPEVIQAMTEAMREAWGNPSSPYPA-GRKAKDIIDTARENIAKMIGG 87
Query: 419 DPREIIFTSGATESNNIAIKGVARFYR-----------------SRKKHLITTQTEHKCV 547
P++IIFTSG TESNN+ I V + + HLIT EH +
Sbjct: 88 KPQDIIFTSGGTESNNLVIHSVVKHFHLTHASEGTRAEPSGPLAGAVPHLITCTVEHDSI 147
Query: 548 -LDSCRSLEAEGFQVTYLPVKK-SGIIDLKELEAAIRPDTSLVSVMTVNNEIGVKQPIAE 721
L LE + VT++PV K +G ++++++ AA+RP T LV++M NNE GV PI+E
Sbjct: 148 RLPLEHLLEEQVAAVTFVPVSKVNGQVEVEDILAAVRPATCLVTIMLANNETGVIMPISE 207
Query: 722 IGRICSSRK----------VYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYGPKGVGA 871
I + + + HTDAAQA+GK +DV D+ +DL++I GHK YGP+ +GA
Sbjct: 208 ISQRIKALNQKRAASGLPVILLHTDAAQALGKQRVDVEDLGVDLLTIVGHKFYGPR-IGA 266
Query: 872 IYIRRRPRVR-VEALQSGGGQERGMRSGTVPTPLVVGLGAACEVAQQEME-YD-HKRISK 1042
+YIR + + + GGGQER R GT TP++ GLG A E+ + E Y+ H R +
Sbjct: 267 LYIRGLGELTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAELVTKNCEAYEAHMRDVR 326
Query: 1043 --LAERLIQKIMKSLPDVVMNGDPEHHYPGCINLSF--AYVEGESLLMALKDVALSSGSA 1210
L ERL + K + P N S ++G +L + + S G+A
Sbjct: 327 DYLEERLEAEFDKQRIHLNSRFPGTERLPNTCNFSIRGPQLQGRLVLAQCRTLLASVGAA 386
Query: 1211 CTSASLE-PSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIHHVKRL 1369
C S + PS VL + G D+A +++R +GR TT +VD V V RL
Sbjct: 387 CHSDHADRPSPVLLSCGIPFDVARNALRLSVGRSTTRADVDVVVRDLKQAVARL 440
>ref|XP_547604.2| PREDICTED: similar to molybdenum cofactor sulfurase [Canis
familiaris].
Length = 858
Score = 58.2 bits (139), Expect = 2e-08
Identities = 63/257 (24%), Positives = 109/257 (42%), Gaps = 19/257 (7%)
Frame = +2
Query: 239 RPLYMDVQATTPLDPRVLDAMLPYLV-NYYGNPHSRTHAYGWESEAAMEHARQQVASLI- 412
R +Y+D T L + L+ N YGNPHS+ + E +EH R ++ +
Sbjct: 27 RTVYLDHAGATLFPQSQLTSFTNDLMENVYGNPHSQNISSKLTHET-VEHVRYRILAHFH 85
Query: 413 -GADPREIIFTSGATESNNI---AIKGVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEG 580
++ +IFT+G+T + + A V+ H V+ + A
Sbjct: 86 TSSEDYSVIFTAGSTAALKLVAEAFPWVSPGPECSGSRFCYLTDSHTSVVGMRKVTTA-- 143
Query: 581 FQVTYLPVKKSGI-IDLKELEAAIRPDTSLVSVMTV---NNEIGVKQPIAEIGRICSSR- 745
VT +PV+ + + + AA PD L + +N G + P++ IG + + R
Sbjct: 144 MNVTSIPVRPEDMRLAERRAAAASDPDCQLPHLFCYPAQSNFSGTRYPLSWIGEVKAGRM 203
Query: 746 -------KVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYG-PKGVGAIYIRRRPRVR 901
K + DAA V PLD++ + D + +S +K++G P G+GA+ + R
Sbjct: 204 CPVSVPGKWFVLLDAASYVSTSPLDLSVHQADFVPLSFYKLFGFPTGLGALLVNNRVAPL 263
Query: 902 VEALQSGGGQERGMRSG 952
+ GGG +G
Sbjct: 264 LRKTYFGGGTAAAYLAG 280
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,667,063
Number of extensions: 1651614
Number of successful extensions: 5930
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5920
Number of HSP's successfully gapped: 3
Length of query: 466
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 360
Effective length of database: 15,340,888
Effective search space: 5522719680
Effective search space used: 5522719680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003387
(1398 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_066923.3| cysteine desulfurase, mitochondrial isoform a p... 803 0.0
Alignment gi|NP_001185918.1| cysteine desulfurase, mitochondrial isoform ... 676 0.0
Alignment gi|NP_057594.4| selenocysteine lyase [Homo sapiens]. 212 8e-55
Alignment gi|NP_060417.2| molybdenum cofactor sulfurase [Homo sapiens]. 57 5e-08
>ref|NP_066923.3| cysteine desulfurase, mitochondrial isoform a precursor [Homo
sapiens].
Length = 457
Score = 803 bits (2073), Expect = 0.0
Identities = 402/419 (95%), Positives = 409/419 (97%)
Frame = +2
Query: 140 SPTRGLRLRVVDHAPQSAVPSDAVTAPEAEPVLRPLYMDVQATTPLDPRVLDAMLPYLVN 319
+PTRGLRLRV D APQSAVP+D APE PVLRPLYMDVQATTPLDPRVLDAMLPYL+N
Sbjct: 24 APTRGLRLRVGDRAPQSAVPADTAAAPEVGPVLRPLYMDVQATTPLDPRVLDAMLPYLIN 83
Query: 320 YYGNPHSRTHAYGWESEAAMEHARQQVASLIGADPREIIFTSGATESNNIAIKGVARFYR 499
YYGNPHSRTHAYGWESEAAME ARQQVASLIGADPREIIFTSGATESNNIAIKGVARFYR
Sbjct: 84 YYGNPHSRTHAYGWESEAAMERARQQVASLIGADPREIIFTSGATESNNIAIKGVARFYR 143
Query: 500 SRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPVKKSGIIDLKELEAAIRPDTSLVSVM 679
SRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPV+KSGIIDLKELEAAI+PDTSLVSVM
Sbjct: 144 SRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPVQKSGIIDLKELEAAIQPDTSLVSVM 203
Query: 680 TVNNEIGVKQPIAEIGRICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYGPK 859
TVNNEIGVKQPIAEIGRICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYGPK
Sbjct: 204 TVNNEIGVKQPIAEIGRICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYGPK 263
Query: 860 GVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPLVVGLGAACEVAQQEMEYDHKRIS 1039
GVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPLVVGLGAACEVAQQEMEYDHKRIS
Sbjct: 264 GVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPLVVGLGAACEVAQQEMEYDHKRIS 323
Query: 1040 KLAERLIQKIMKSLPDVVMNGDPEHHYPGCINLSFAYVEGESLLMALKDVALSSGSACTS 1219
KL+ERLIQ IMKSLPDVVMNGDP+HHYPGCINLSFAYVEGESLLMALKDVALSSGSACTS
Sbjct: 324 KLSERLIQNIMKSLPDVVMNGDPKHHYPGCINLSFAYVEGESLLMALKDVALSSGSACTS 383
Query: 1220 ASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIHHVKRLREMSPLWEM 1396
ASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCI HVKRLREMSPLWEM
Sbjct: 384 ASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIQHVKRLREMSPLWEM 442
>ref|NP_001185918.1| cysteine desulfurase, mitochondrial isoform b precursor [Homo
sapiens].
Length = 406
Score = 676 bits (1743), Expect = 0.0
Identities = 350/419 (83%), Positives = 357/419 (85%)
Frame = +2
Query: 140 SPTRGLRLRVVDHAPQSAVPSDAVTAPEAEPVLRPLYMDVQATTPLDPRVLDAMLPYLVN 319
+PTRGLRLRV D APQSAVP+D APE PVLRPLYMDVQATTPLDPRVLDAMLPYL+N
Sbjct: 24 APTRGLRLRVGDRAPQSAVPADTAAAPEVGPVLRPLYMDVQATTPLDPRVLDAMLPYLIN 83
Query: 320 YYGNPHSRTHAYGWESEAAMEHARQQVASLIGADPREIIFTSGATESNNIAIKGVARFYR 499
YYGNPHSRTHAYGWESEAAME ARQQVASLIGADPREIIFTSGATESNN
Sbjct: 84 YYGNPHSRTHAYGWESEAAMERARQQVASLIGADPREIIFTSGATESNN----------- 132
Query: 500 SRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPVKKSGIIDLKELEAAIRPDTSLVSVM 679
I +KELEAAI+PDTSLVSVM
Sbjct: 133 ----------------------------------------IAIKELEAAIQPDTSLVSVM 152
Query: 680 TVNNEIGVKQPIAEIGRICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYGPK 859
TVNNEIGVKQPIAEIGRICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYGPK
Sbjct: 153 TVNNEIGVKQPIAEIGRICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYGPK 212
Query: 860 GVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPLVVGLGAACEVAQQEMEYDHKRIS 1039
GVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPLVVGLGAACEVAQQEMEYDHKRIS
Sbjct: 213 GVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPLVVGLGAACEVAQQEMEYDHKRIS 272
Query: 1040 KLAERLIQKIMKSLPDVVMNGDPEHHYPGCINLSFAYVEGESLLMALKDVALSSGSACTS 1219
KL+ERLIQ IMKSLPDVVMNGDP+HHYPGCINLSFAYVEGESLLMALKDVALSSGSACTS
Sbjct: 273 KLSERLIQNIMKSLPDVVMNGDPKHHYPGCINLSFAYVEGESLLMALKDVALSSGSACTS 332
Query: 1220 ASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIHHVKRLREMSPLWEM 1396
ASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCI HVKRLREMSPLWEM
Sbjct: 333 ASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIQHVKRLREMSPLWEM 391
>ref|NP_057594.4| selenocysteine lyase [Homo sapiens].
Length = 453
Score = 212 bits (539), Expect = 8e-55
Identities = 150/442 (33%), Positives = 226/442 (51%), Gaps = 41/442 (9%)
Frame = +2
Query: 179 APQSAVPSDAVTAPEA----EPVLRPLYMDVQATTPLDPRVLDAMLPYLVNYYGNPHSRT 346
AP P+ A + P R +YMD ATTPL+P V+ AM + +GNP S
Sbjct: 14 APGRDAPAPAASQPSGCGKHNSPERKVYMDYNATTPLEPEVIQAMTKAMWEAWGNPSS-P 72
Query: 347 HAYGWESEAAMEHARQQVASLIGADPREIIFTSGATESNNIAIKGVARFYRSR------- 505
++ G +++ + AR+ +A +IG P++IIFTSG TESNN+ I V + + +
Sbjct: 73 YSAGRKAKDIINAARESLAKMIGGKPQDIIFTSGGTESNNLVIHSVVKHFHANQTSKGHT 132
Query: 506 ----------KKHLITTQTEHKCV-LDSCRSLEAEGFQVTYLPVKK-SGIIDLKELEAAI 649
K H IT+ EH + L +E + VT++PV K SG ++ ++ AA+
Sbjct: 133 GGHHSPVKGAKPHFITSSVEHDSIRLPLEHLVEEQVAAVTFVPVSKVSGQAEVDDILAAV 192
Query: 650 RPDTSLVSVMTVNNEIGVKQPIAEIGRICSSRK----------VYFHTDAAQAVGKIPLD 799
RP T LV++M NNE G+ P+ EI + + + HTDAAQA+GK +D
Sbjct: 193 RPTTRLVTIMLANNETGIVMPVPEISQRIKALNQERVAAGLPPILVHTDAAQALGKQRVD 252
Query: 800 VNDMKIDLMSISGHKIYGPKGVGAIYIRRRPR-VRVEALQSGGGQERGMRSGTVPTPLVV 976
V D+ +D ++I GHK YGP+ +GA+YIR + + GGGQER R GT TP++
Sbjct: 253 VEDLGVDFLTIVGHKFYGPR-IGALYIRGLGEFTPLYPMLFGGGQERNFRPGTENTPMIA 311
Query: 977 GLGAACEVAQQEME-YD-HKRISK--LAERLIQKIMKSLPDVVMNGDPEHHYPGCINLSF 1144
GLG A E+ Q E Y+ H R + L ERL + + + P N S
Sbjct: 312 GLGKAAELVTQNCEAYEAHMRDVRDYLEERLEAEFGQKRIHLNSQFPGTQRLPNTCNFSI 371
Query: 1145 --AYVEGESLLMALKDVALSSGSACTS-ASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTT 1315
++G +L + + S G+AC S +PS VL + G D+A +++R +GR TT
Sbjct: 372 RGPRLQGHVVLAQCRVLMASVGAACHSDHGDQPSPVLLSYGVPFDVARNALRLSVGRSTT 431
Query: 1316 EEEVDYTVEKCIHHVKRLREMS 1381
EVD V+ V +L + +
Sbjct: 432 RAEVDLVVQDLKQAVAQLEDQA 453
>ref|NP_060417.2| molybdenum cofactor sulfurase [Homo sapiens].
Length = 888
Score = 56.6 bits (135), Expect = 5e-08
Identities = 65/255 (25%), Positives = 107/255 (41%), Gaps = 19/255 (7%)
Frame = +2
Query: 245 LYMDVQATTPLDPRVLDAMLPYLV-NYYGNPHSRTHAYGWESEAAMEHARQQVASLIG-- 415
+Y+D T L++ L+ N YGNPHS+ + + +E R ++ +
Sbjct: 50 VYLDHAGATLFSQSQLESFTSDLMENTYGNPHSQNISSKLTHDT-VEQVRYRILAHFHTT 108
Query: 416 ADPREIIFTSGATESNNI---AIKGVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQ 586
A+ +IFT+G+T + + A V++ S H V+ A
Sbjct: 109 AEDYTVIFTAGSTAALKLVAEAFPWVSQGPESSGSRFCYLTDSHTSVVGMRNVTMA--IN 166
Query: 587 VTYLPVKKSGIIDLKELEA-AIRPDTSLVSVMTV---NNEIGVKQPIAEIGRICSSR--- 745
V PV+ + +E A A PD L + +N GV+ P++ I + S R
Sbjct: 167 VISTPVRPEDLWSAEERSASASNPDCQLPHLFCYPAQSNFSGVRYPLSWIEEVKSGRLHP 226
Query: 746 -----KVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYG-PKGVGAIYIRRRPRVRVE 907
K + DAA V PLD++ + D + IS +KI+G P G+GA+ + R +
Sbjct: 227 VSTPGKWFVLLDAASYVSTSPLDLSAHQADFVPISFYKIFGFPTGLGALLVHNRAAPLLR 286
Query: 908 ALQSGGGQERGMRSG 952
GGG +G
Sbjct: 287 KTYFGGGTASAYLAG 301
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,582,313
Number of extensions: 1628276
Number of successful extensions: 5830
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5807
Number of HSP's successfully gapped: 5
Length of query: 466
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 360
Effective length of database: 14,802,980
Effective search space: 5329072800
Effective search space used: 5329072800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003387
(1398 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035041.2| cysteine desulfurase, mitochondrial [Mus muscul... 781 0.0
Alignment gi|NP_057926.2| selenocysteine lyase [Mus musculus]. 203 3e-52
Alignment gi|XP_001474999.1| PREDICTED: cysteine desulfurase, mitochondri... 143 3e-34
Alignment gi|NP_081055.1| molybdenum cofactor sulfurase [Mus musculus]. 60 5e-09
>ref|NP_035041.2| cysteine desulfurase, mitochondrial [Mus musculus].
Length = 459
Score = 781 bits (2018), Expect = 0.0
Identities = 393/418 (94%), Positives = 403/418 (96%)
Frame = +2
Query: 143 PTRGLRLRVVDHAPQSAVPSDAVTAPEAEPVLRPLYMDVQATTPLDPRVLDAMLPYLVNY 322
PTRGLRLRVVDH P S V S EAE VLRPLYMDVQATTPLDPRVLDAMLPYLVNY
Sbjct: 33 PTRGLRLRVVDHGPHSPVHS------EAEAVLRPLYMDVQATTPLDPRVLDAMLPYLVNY 86
Query: 323 YGNPHSRTHAYGWESEAAMEHARQQVASLIGADPREIIFTSGATESNNIAIKGVARFYRS 502
YGNPHSRTHAYGWESEAAME ARQQVASLIGADPREIIFTSGATESNNIAIKGVARFYRS
Sbjct: 87 YGNPHSRTHAYGWESEAAMERARQQVASLIGADPREIIFTSGATESNNIAIKGVARFYRS 146
Query: 503 RKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPVKKSGIIDLKELEAAIRPDTSLVSVMT 682
RKKHL+TTQTEHKCVLDSCRSLEAEGF+VTYLPV+KSGIIDLKELEAAI+PDTSLVSVMT
Sbjct: 147 RKKHLVTTQTEHKCVLDSCRSLEAEGFRVTYLPVQKSGIIDLKELEAAIQPDTSLVSVMT 206
Query: 683 VNNEIGVKQPIAEIGRICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYGPKG 862
VNNEIGVKQPIAEIG+ICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHK+YGPKG
Sbjct: 207 VNNEIGVKQPIAEIGQICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKLYGPKG 266
Query: 863 VGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPLVVGLGAACEVAQQEMEYDHKRISK 1042
VGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPLVVGLGAACE+AQQEMEYDHKRISK
Sbjct: 267 VGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPLVVGLGAACELAQQEMEYDHKRISK 326
Query: 1043 LAERLIQKIMKSLPDVVMNGDPEHHYPGCINLSFAYVEGESLLMALKDVALSSGSACTSA 1222
LAERL+Q IMK+LPDVVMNGDP+ HYPGCINLSFAYVEGESLLMALKDVALSSGSACTSA
Sbjct: 327 LAERLVQNIMKNLPDVVMNGDPKQHYPGCINLSFAYVEGESLLMALKDVALSSGSACTSA 386
Query: 1223 SLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIHHVKRLREMSPLWEM 1396
SLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYT EKCIHHVKRLREMSPLWEM
Sbjct: 387 SLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTAEKCIHHVKRLREMSPLWEM 444
>ref|NP_057926.2| selenocysteine lyase [Mus musculus].
Length = 432
Score = 203 bits (516), Expect = 3e-52
Identities = 140/414 (33%), Positives = 223/414 (53%), Gaps = 37/414 (8%)
Frame = +2
Query: 239 RPLYMDVQATTPLDPRVLDAMLPYLVNYYGNPHSRTHAYGWESEAAMEHARQQVASLIGA 418
R +YMD ATTPL+P V+ A+ + +GNP S ++ G +++ + AR +A +IG
Sbjct: 18 RKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSS-SYVSGRKAKDIINAARASLAKMIGG 76
Query: 419 DPREIIFTSGATESNNIAIKGVARFYRSR-----------------KKHLITTQTEHKCV 547
P++IIFTSG TESNN+ I + R + + + H IT EH +
Sbjct: 77 KPQDIIFTSGGTESNNLVIHSMVRCFHEQQTLKGNMVDQHSPEEGTRPHFITCTVEHDSI 136
Query: 548 -LDSCRSLEAEGFQVTYLPVKK-SGIIDLKELEAAIRPDTSLVSVMTVNNEIGVKQPIAE 721
L +E + +VT++PV K +G +++++ AA+RP T LV++M NNE GV P++E
Sbjct: 137 RLPLEHLVENQMAEVTFVPVSKVNGQAEVEDILAAVRPTTCLVTIMLANNETGVIMPVSE 196
Query: 722 IGRICSSR----------KVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYGPKGVGA 871
I R + +V HTDAAQA+GK +DV D+ +D ++I GHK YGP+ +GA
Sbjct: 197 ISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPR-IGA 255
Query: 872 IYIRRRPRVR-VEALQSGGGQERGMRSGTVPTPLVVGLGAACEVAQQEME-YD-HKRISK 1042
+Y+R ++ + + GGGQE R GT TP++ GLG A ++ + E Y+ H R +
Sbjct: 256 LYVRGVGKLTPLYPMLFGGGQEWNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIR 315
Query: 1043 --LAERLIQKIMKSLPDVVMNGDPEHHYPGCINLSF--AYVEGESLLMALKDVALSSGSA 1210
L ERL + K + + P N S + ++G ++L + + S G++
Sbjct: 316 DYLEERLEAEFGKRI-HLNSRFPGVERLPNTCNFSIQGSQLQGYTVLAQCRTLLASVGAS 374
Query: 1211 CTSASLE-PSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIHHVKRL 1369
C S + PS VL + G D+A +++R +GR TT +VD V+ V +L
Sbjct: 375 CHSNHEDRPSPVLLSCGIPVDVARNAVRLSVGRGTTRADVDLIVQDLKQAVAQL 428
>ref|XP_001474999.1| PREDICTED: cysteine desulfurase, mitochondrial-like [Mus musculus].
Length = 148
Score = 143 bits (361), Expect = 3e-34
Identities = 72/84 (85%), Positives = 72/84 (85%)
Frame = +2
Query: 143 PTRGLRLRVVDHAPQSAVPSDAVTAPEAEPVLRPLYMDVQATTPLDPRVLDAMLPYLVNY 322
PTRGLRLRVVDH P S V S EAE VLRPLYMDVQATTPLDPRVLDAMLPYLVNY
Sbjct: 33 PTRGLRLRVVDHGPHSPVHS------EAEAVLRPLYMDVQATTPLDPRVLDAMLPYLVNY 86
Query: 323 YGNPHSRTHAYGWESEAAMEHARQ 394
YGNPHSRTHAYGWESEAAME ARQ
Sbjct: 87 YGNPHSRTHAYGWESEAAMERARQ 110
>ref|NP_081055.1| molybdenum cofactor sulfurase [Mus musculus].
Length = 862
Score = 59.7 bits (143), Expect = 5e-09
Identities = 59/230 (25%), Positives = 99/230 (43%), Gaps = 18/230 (7%)
Frame = +2
Query: 317 NYYGNPHSRTHAYGWESEAAMEHARQQVASLIGADPRE--IIFTSGATESNNI---AIKG 481
N YGNPHS+ + +E R ++ + P + +IFT+G+T + + A
Sbjct: 75 NVYGNPHSQNITSKLTHDT-VEQVRYRILTHFHTTPEDYIVIFTAGSTAALRLVAEAFPW 133
Query: 482 VARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPVKKSGIIDLKELEA-AIRPD 658
V+R + H H V+ + A VT +PVK + + +A A PD
Sbjct: 134 VSRSPENSGSHFCYLTDNHTSVVGMRKV--AAAMSVTSIPVKPEDMWSAEGKDAGACDPD 191
Query: 659 TSLVSVMTV---NNEIGVKQPIAEIGRICSSR--------KVYFHTDAAQAVGKIPLDVN 805
L + +N G + P++ + + S R K + DAA V PLD++
Sbjct: 192 CQLPHLFCYPAQSNFSGTRYPLSWVEEVKSGRRSPVNAPGKWFVLLDAASYVSTSPLDLS 251
Query: 806 DMKIDLMSISGHKIYG-PKGVGAIYIRRRPRVRVEALQSGGGQERGMRSG 952
+ D + IS +KI+G P G+GA+ + + + GGG +G
Sbjct: 252 AHQADFIPISFYKIFGLPTGLGALLVNKHVAPLLRKGYFGGGTAAAYLAG 301
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,761,644
Number of extensions: 1361435
Number of successful extensions: 4677
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4658
Number of HSP's successfully gapped: 4
Length of query: 466
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 361
Effective length of database: 12,463,779
Effective search space: 4499424219
Effective search space used: 4499424219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003387
(1398 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001129982.1| hypothetical protein LOC100156145 [Sus scrof... 836 0.0
Alignment gi|XP_003133817.1| PREDICTED: selenocysteine lyase [Sus scrofa]. 167 1e-41
Alignment gi|XP_003356462.1| PREDICTED: molybdenum cofactor sulfurase-lik... 61 2e-09
>ref|NP_001129982.1| hypothetical protein LOC100156145 [Sus scrofa].
Length = 457
Score = 836 bits (2160), Expect = 0.0
Identities = 420/420 (100%), Positives = 420/420 (100%)
Frame = +2
Query: 137 KSPTRGLRLRVVDHAPQSAVPSDAVTAPEAEPVLRPLYMDVQATTPLDPRVLDAMLPYLV 316
KSPTRGLRLRVVDHAPQSAVPSDAVTAPEAEPVLRPLYMDVQATTPLDPRVLDAMLPYLV
Sbjct: 23 KSPTRGLRLRVVDHAPQSAVPSDAVTAPEAEPVLRPLYMDVQATTPLDPRVLDAMLPYLV 82
Query: 317 NYYGNPHSRTHAYGWESEAAMEHARQQVASLIGADPREIIFTSGATESNNIAIKGVARFY 496
NYYGNPHSRTHAYGWESEAAMEHARQQVASLIGADPREIIFTSGATESNNIAIKGVARFY
Sbjct: 83 NYYGNPHSRTHAYGWESEAAMEHARQQVASLIGADPREIIFTSGATESNNIAIKGVARFY 142
Query: 497 RSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPVKKSGIIDLKELEAAIRPDTSLVSV 676
RSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPVKKSGIIDLKELEAAIRPDTSLVSV
Sbjct: 143 RSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPVKKSGIIDLKELEAAIRPDTSLVSV 202
Query: 677 MTVNNEIGVKQPIAEIGRICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYGP 856
MTVNNEIGVKQPIAEIGRICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYGP
Sbjct: 203 MTVNNEIGVKQPIAEIGRICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYGP 262
Query: 857 KGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPLVVGLGAACEVAQQEMEYDHKRI 1036
KGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPLVVGLGAACEVAQQEMEYDHKRI
Sbjct: 263 KGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPLVVGLGAACEVAQQEMEYDHKRI 322
Query: 1037 SKLAERLIQKIMKSLPDVVMNGDPEHHYPGCINLSFAYVEGESLLMALKDVALSSGSACT 1216
SKLAERLIQKIMKSLPDVVMNGDPEHHYPGCINLSFAYVEGESLLMALKDVALSSGSACT
Sbjct: 323 SKLAERLIQKIMKSLPDVVMNGDPEHHYPGCINLSFAYVEGESLLMALKDVALSSGSACT 382
Query: 1217 SASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIHHVKRLREMSPLWEM 1396
SASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIHHVKRLREMSPLWEM
Sbjct: 383 SASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIHHVKRLREMSPLWEM 442
>ref|XP_003133817.1| PREDICTED: selenocysteine lyase [Sus scrofa].
Length = 499
Score = 167 bits (423), Expect = 1e-41
Identities = 101/278 (36%), Positives = 153/278 (55%), Gaps = 30/278 (10%)
Frame = +2
Query: 239 RPLYMDVQATTPLDPRVLDAMLPYLVNYYGNPHSRTHAYGWESEAAMEHARQQVASLIGA 418
R +YMD ATTPL+P V+ AM + +GNP S ++ G +++ + AR+ +A ++G
Sbjct: 30 RKVYMDYNATTPLEPEVIQAMAEAMQEAWGNPSS-SYPEGRKAKETIGAARESLARMVGG 88
Query: 419 DPREIIFTSGATESNNIAIKGVARFYRSRK-----------------KHLITTQTEHKCV 547
P+++IFTSG TESNN+ I + + H IT EH +
Sbjct: 89 RPQDVIFTSGGTESNNLVIHSALKHFHKTHISEGDAAEHPRPVAGALPHFITCTVEHDSI 148
Query: 548 -LDSCRSLEAEGFQVTYLPVKK-SGIIDLKELEAAIRPDTSLVSVMTVNNEIGVKQPIAE 721
L +E +VT++PV K SG + +++ AA+RP T LV++M NNE GV P+ +
Sbjct: 149 RLPLEHLVEEREAEVTFVPVSKVSGQVKAEDILAAVRPTTCLVTIMLANNETGVVMPVPD 208
Query: 722 IGRICSSRK----------VYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYGPKGVGA 871
I R + + HTDAAQA+GK +DV D+ +D ++I GHK YGP+ +GA
Sbjct: 209 ISRRVRALNQQRAARGLPVLLLHTDAAQALGKRRVDVWDLGVDFLTIVGHKFYGPR-IGA 267
Query: 872 IYIRRRPRVR-VEALQSGGGQERGMRSGTVPTPLVVGL 982
+Y+R + + + GGGQER R GT TP++ GL
Sbjct: 268 LYVRGLGELTPLYPMLFGGGQERNFRPGTENTPMIAGL 305
>ref|XP_003356462.1| PREDICTED: molybdenum cofactor sulfurase-like [Sus scrofa].
Length = 889
Score = 60.8 bits (146), Expect = 2e-09
Identities = 66/256 (25%), Positives = 108/256 (42%), Gaps = 20/256 (7%)
Frame = +2
Query: 245 LYMDVQATTPLDPRVLDAMLPYLV-NYYGNPHSRTHAYGWESEAAMEHARQQVASLIGAD 421
+Y+D T L + L+ N YGNPHS+ + E +E R ++ +
Sbjct: 50 VYLDHAGATLFPQSQLTSFTKDLMENLYGNPHSQNISSKLTYET-VEQVRYRILAHFCTS 108
Query: 422 PRE--IIFTSGATESNNI---AIKGVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQ 586
P + +IFT+G+T + + A V+ S H V+ + A
Sbjct: 109 PEDYTVIFTAGSTAALKLVAEAFPWVSPGPESSGSRFCYLTDSHTSVVGMRKVTTA--MN 166
Query: 587 VTYLPVKKSGIIDLKELEAAIRPDTS-----LVSVMTVNNEIGVKQPIAEIGRICSSR-- 745
VT +PV+ + ++ +AA D L +N G + P++ IG + S +
Sbjct: 167 VTCIPVRPEDMWLAEKQDAAAAGDPDHQPPHLFCYPAQSNFSGSRYPLSWIGEVKSGQMR 226
Query: 746 ------KVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYG-PKGVGAIYIRRRPRVRV 904
K Y DAA VG PLD++ + D + IS +KI+G P G+GA+ + R +
Sbjct: 227 PVSAPGKWYVLLDAAAYVGTSPLDLSVHQADFVPISFYKIFGFPTGLGALLVNNRTAPLL 286
Query: 905 EALQSGGGQERGMRSG 952
GGG +G
Sbjct: 287 RKTYFGGGTAAAYLAG 302
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,269,189
Number of extensions: 1031877
Number of successful extensions: 3613
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3604
Number of HSP's successfully gapped: 3
Length of query: 466
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 364
Effective length of database: 8,804,438
Effective search space: 3204815432
Effective search space used: 3204815432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003387
(1398 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 331 6e-88
>Sscrofa_Chr17
|| Length = 69701581
Score = 331 bits (167), Expect = 6e-88
Identities = 167/167 (100%)
Strand = Plus / Minus
Query: 1 agttgtacttccgggattcggtagccgaggaccgcggccgcttcgggcgggggcttctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44379786 agttgtacttccgggattcggtagccgaggaccgcggccgcttcgggcgggggcttctgc 44379727
Query: 61 cgccaggatcatgctactgcgaaccgcttcgaggcgggtggccgcagccgtgctcgccgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44379726 cgccaggatcatgctactgcgaaccgcttcgaggcgggtggccgcagccgtgctcgccgc 44379667
Query: 121 tgccaggccgagggccaagtcgcccactcgggggctgcgcctgcgcg 167
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44379666 tgccaggccgagggccaagtcgcccactcgggggctgcgcctgcgcg 44379620
Score = 317 bits (160), Expect = 9e-84
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 859 aggggttggtgctatctacattcgccgccggccccgtgtgcgtgtagaggccctgcagag 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44357839 aggggttggtgctatctacattcgccgccggccccgtgtgcgtgtagaggccctgcagag 44357780
Query: 919 tggaggggggcaggagcggggtatgcggtctgggacagtccccacacccttggtggtggg 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44357779 tggaggggggcaggagcggggtatgcggtctgggacagtccccacacccttggtggtggg 44357720
Query: 979 gctgggggctgcgtgtgaggtggcacagcaagagatggag 1018
||||||||||||||||||||||||||||||||||||||||
Sbjct: 44357719 gctgggggctgcgtgtgaggtggcacagcaagagatggag 44357680
Score = 309 bits (156), Expect = 2e-81
Identities = 156/156 (100%)
Strand = Plus / Minus
Query: 477 agggggtggccaggttctataggtcacggaaaaagcacttgatcaccacgcagacagaac 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44371808 agggggtggccaggttctataggtcacggaaaaagcacttgatcaccacgcagacagaac 44371749
Query: 537 acaaatgtgttttagactcctgccgttcactggaagctgagggctttcaggtcacctacc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44371748 acaaatgtgttttagactcctgccgttcactggaagctgagggctttcaggtcacctacc 44371689
Query: 597 tcccagtgaagaagagtgggatcatcgacctgaagg 632
||||||||||||||||||||||||||||||||||||
Sbjct: 44371688 tcccagtgaagaagagtgggatcatcgacctgaagg 44371653
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 724 agggcggatttgcagttccagaaaggtatatttccataccgatgcagcccaggctgttgg 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44361689 agggcggatttgcagttccagaaaggtatatttccataccgatgcagcccaggctgttgg 44361630
Query: 784 aaaaatccctctcgatgtcaatgacatgaaaattgaccttatgagcatcagtggtcacaa 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44361629 aaaaatccctctcgatgtcaatgacatgaaaattgaccttatgagcatcagtggtcacaa 44361570
Query: 844 aatctatggtcccaaagg 861
||||||||||||||||||
Sbjct: 44361569 aatctatggtcccaaagg 44361552
Score = 234 bits (118), Expect = 1e-58
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 277 ggaccctcgggtgcttgatgccatgcttccttacctagtcaactactatgggaacccaca 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44377645 ggaccctcgggtgcttgatgccatgcttccttacctagtcaactactatgggaacccaca 44377586
Query: 337 ctcccggacacatgcgtatggctgggaaagtgaggcagccatggaacatgctcgccag 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44377585 ctcccggacacatgcgtatggctgggaaagtgaggcagccatggaacatgctcgccag 44377528
Score = 222 bits (112), Expect = 4e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 167 gttgtagaccatgctccccagtctgctgttccctcggatgcagtcactgctccggaggca 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44378997 gttgtagaccatgctccccagtctgctgttccctcggatgcagtcactgctccggaggca 44378938
Query: 227 gagccagtgctgcggcctctgtatatggatgtgcaagctacaactcctctgg 278
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44378937 gagccagtgctgcggcctctgtatatggatgtgcaagctacaactcctctgg 44378886
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 1017 agtatgaccacaagcggatctcaaagttagcagagcgactgatacagaagatcatgaaga 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44357258 agtatgaccacaagcggatctcaaagttagcagagcgactgatacagaagatcatgaaga 44357199
Query: 1077 gccttccagacgtggtgatgaatggagaccccgagcaccattacccagg 1125
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44357198 gccttccagacgtggtgatgaatggagaccccgagcaccattacccagg 44357150
Score = 192 bits (97), Expect = 4e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 630 aggaactagaggctgccatccggccagataccagcctggtctcggtcatgactgtgaaca 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44363264 aggaactagaggctgccatccggccagataccagcctggtctcggtcatgactgtgaaca 44363205
Query: 690 atgagattggagtgaagcagcccatcgcagaaatagg 726
|||||||||||||||||||||||||||||||||||||
Sbjct: 44363204 atgagattggagtgaagcagcccatcgcagaaatagg 44363168
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 1287 tcaggtttggcattggccgtttcactactgaggaggaagtggactacacagtggaaaagt 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44333942 tcaggtttggcattggccgtttcactactgaggaggaagtggactacacagtggaaaagt 44333883
Query: 1347 gcattcatcatgtgaagcgtcttcgagaaatgag 1380
||||||||||||||||||||||||||||||||||
Sbjct: 44333882 gcattcatcatgtgaagcgtcttcgagaaatgag 44333849
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 1287 tcaggtttggcattggccgtttcactactgaggaggaagtggactacacagtggaaaagt 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44355353 tcaggtttggcattggccgtttcactactgaggaggaagtggactacacagtggaaaagt 44355294
Query: 1347 gcattcatcatgtgaagcgtcttcgagaaatgag 1380
||||||||||||||||||||||||||||||||||
Sbjct: 44355293 gcattcatcatgtgaagcgtcttcgagaaatgag 44355260
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 393 agcaagtagcatctctgattggggccgatcctcgtgagatcatcttcactagcggtgcta 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44376714 agcaagtagcatctctgattggggccgatcctcgtgagatcatcttcactagcggtgcta 44376655
Query: 453 ctgaatccaacaacatagcaattaagg 479
|||||||||||||||||||||||||||
Sbjct: 44376654 ctgaatccaacaacatagcaattaagg 44376628
Score = 167 bits (84), Expect = 2e-38
Identities = 87/88 (98%)
Strand = Plus / Minus
Query: 1205 agtgcctgcacctctgcatccttggaaccttcttatgtccttcgagcaattggcactgat 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44356138 agtgcctgcacctctgcatccttggaaccttcttatgtccttcgagcaattggcactgat 44356079
Query: 1265 gaagatttagctcattcttctatcaggt 1292
|| |||||||||||||||||||||||||
Sbjct: 44356078 gaggatttagctcattcttctatcaggt 44356051
Score = 163 bits (82), Expect = 3e-37
Identities = 85/86 (98%)
Strand = Plus / Minus
Query: 1121 ccaggctgtatcaacctctcctttgcgtatgtggaaggggaaagtctgctaatggcactc 1180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 44356855 ccaggctgtatcaacctctcctttgcatatgtggaaggggaaagtctgctaatggcactc 44356796
Query: 1181 aaggatgtcgccttatcctcagggag 1206
||||||||||||||||||||||||||
Sbjct: 44356795 aaggatgtcgccttatcctcagggag 44356770
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,417,212
Number of extensions: 1094
Number of successful extensions: 1094
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1094
Number of HSP's successfully gapped: 13
Length of query: 1398
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1377
Effective length of database: 2,808,413,156
Effective search space: 3867184915812
Effective search space used: 3867184915812
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)