Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003388
(1905 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069023.1| nuclear RNA export factor 1 [Bos taurus]. 908 0.0
Alignment gi|XP_002699874.1| PREDICTED: nuclear RNA export factor 2 [Bos ... 479 e-137
Alignment gi|XP_869994.3| PREDICTED: nuclear RNA export factor 2 [Bos tau... 479 e-137
Alignment gi|XP_002699844.1| PREDICTED: nuclear RNA export factor 3-like ... 397 e-110
Alignment gi|XP_601830.4| PREDICTED: nuclear RNA export factor 3-like [Bo... 397 e-110
Alignment gi|XP_002699887.1| PREDICTED: nuclear RNA export factor 3-like ... 370 e-102
Alignment gi|NP_001071520.1| nuclear RNA export factor 3 [Bos taurus]. 367 e-101
Alignment gi|XP_001250763.3| PREDICTED: nuclear RNA export factor 3-like,... 365 e-101
Alignment gi|XP_002699879.1| PREDICTED: nuclear RNA export factor 3-like ... 276 6e-74
Alignment gi|XP_869870.4| PREDICTED: nuclear RNA export factor 3-like [Bo... 159 8e-39
>ref|NP_001069023.1| nuclear RNA export factor 1 [Bos taurus].
Length = 620
Score = 908 bits (2346), Expect(2) = 0.0
Identities = 459/547 (83%), Positives = 470/547 (85%)
Frame = +2
Query: 113 MADEGKSYNEHDDRVSFPQRRKKGRGPFRWKCXXXXXXXXXXXXXXXXXXLEEDDRDVAV 292
MADEGKSYNEHDDRVSFPQRRKKGRGPFRWK LE+DDRDVA+
Sbjct: 1 MADEGKSYNEHDDRVSFPQRRKKGRGPFRWKSGEGNRRSGRGGSSVRSSRLEDDDRDVAM 60
Query: 293 SDAQDVXXXXXXXXXXXXXXXGDGWHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNW 472
SD QD GD W+ER+RIHVT+PLRRDR ERGGAGTSQDGTSKNW
Sbjct: 61 SDVQDAPRVRYTPYAARPNRRGDNWNERTRIHVTLPLRRDRSAAERGGAGTSQDGTSKNW 120
Query: 473 FKITIPYGRKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKI 652
FKITIPYGRKYDKSWLL +IQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKI
Sbjct: 121 FKITIPYGRKYDKSWLLNVIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKI 180
Query: 653 LDREXXXXXXXXXXXXXXHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLV 832
LDRE H+VQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLR+DPDLV
Sbjct: 181 LDRENRRISIIINSSSPPHSVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLV 240
Query: 833 AQNIDVVLNRRSCMAAALRXXXXXXXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLS 1012
AQNIDVVLNRRSCMAA LR KLYRLDDLS+IVQKAPNLKILNLS
Sbjct: 241 AQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNKLYRLDDLSSIVQKAPNLKILNLS 300
Query: 1013 GNELKSERELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPP 1192
GNELKSERELDKIKGLKLEELWLDGNTLCDTFRDQSTYISA+RERFPKLLRLDGHELPPP
Sbjct: 301 GNELKSERELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAVRERFPKLLRLDGHELPPP 360
Query: 1193 IAFDVEAPTMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLS 1372
IAFDVEAPT LPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLS
Sbjct: 361 IAFDVEAPTTLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLS 420
Query: 1373 IPFIPQNPARSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSF 1552
IPF PQNPARSNLAEYFKDSRNVKKLKDP+LRFRLLKHTRLNVVAFLNELPKTQHDINSF
Sbjct: 421 IPFTPQNPARSNLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDINSF 480
Query: 1553 VVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNA 1732
VVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVP SNSGLCIVNDELFVRNA
Sbjct: 481 VVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPASNSGLCIVNDELFVRNA 540
Query: 1733 SPDEIQR 1753
S DEIQR
Sbjct: 541 SADEIQR 547
Score = 32.7 bits (73), Expect(2) = 0.0
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 1812 EQQEMLQAFSTQSGM 1856
EQQEMLQAFSTQSGM
Sbjct: 567 EQQEMLQAFSTQSGM 581
>ref|XP_002699874.1| PREDICTED: nuclear RNA export factor 2 [Bos taurus].
Length = 718
Score = 479 bits (1232), Expect(2) = e-137
Identities = 247/462 (53%), Positives = 317/462 (68%)
Frame = +2
Query: 365 WHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNWFKITIPYGRKYDKSWLLGMIQSKC 544
W I VTV + P R +QDG +WFK+TIP+G+KYDK WL+ IQS C
Sbjct: 183 WRREGNICVTV--WGNGKPVMRKMRENTQDGAQGSWFKVTIPHGKKYDKMWLMNSIQSLC 240
Query: 545 SVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDREXXXXXXXXXXXXXXHTVQNE 724
SV FTP++FHY A+FFV+ ASTASAL V+YKI D E ++V+N+
Sbjct: 241 SVCFTPVDFHYVKNGARFFVQKASTASALMDVSYKIYDEENQKIPIFVNPSAVPYSVRNK 300
Query: 725 LKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLVAQNIDVVLNRRSCMAAALRXXXXX 904
L+PE++E+LKL +KR+D SQQ+LDL+ LR DP+L+ +I+++LN+R+CMAAAL+
Sbjct: 301 LRPEKMEKLKLAFNKRFDVSQQSLDLQKLRFDPNLMGHDIEIILNQRNCMAAALQIIKKN 360
Query: 905 XXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 1084
KLY LD LS+IV P +KILNLS NEL S EL+K+KGLKLEELWL
Sbjct: 361 FPELLSLNLSCNKLYHLDGLSDIVHMVPTIKILNLSNNELNSMWELNKMKGLKLEELWLR 420
Query: 1085 GNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTMLPPCKGSYFGTETL 1264
GN LC+ F DQSTY+SA+ E FPKLLRLDG ELP + D P P K + +TL
Sbjct: 421 GNPLCNRFPDQSTYLSAVIECFPKLLRLDGQELPSTVVTDSHPPCATKPSKENNKEPDTL 480
Query: 1265 KNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPFIPQNPARSNLAEYFKDSRNVK 1444
KN++L FL+QYY +YDSG+R LL AYH AC SL+IPF ++P S+L YFKDSRN+K
Sbjct: 481 KNMILQFLKQYYLIYDSGNRYGLLSAYHHKACFSLTIPFHSEDPGLSSLCAYFKDSRNMK 540
Query: 1445 KLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSFVVDISAQTSTLLCFSVNGVFKEVD 1624
K+KDP+LR + LKHT ++V L LPKTQHD++SF+VD+ QT T+LCFSVNG+FKEV+
Sbjct: 541 KVKDPNLRVQQLKHTNSDIVRALCMLPKTQHDLSSFLVDMWFQTGTMLCFSVNGMFKEVE 600
Query: 1625 GKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNASPDEIQ 1750
G S++ +RAFTRTF+ P S+S LCIVNDELFV A P Q
Sbjct: 601 GGSQECVRAFTRTFIITPTSSSSLCIVNDELFVMEARPKNTQ 642
Score = 30.4 bits (67), Expect(2) = e-137
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3
Query: 1812 EQQEMLQAFSTQSGM 1856
EQQ+M+QAFSTQSGM
Sbjct: 663 EQQQMVQAFSTQSGM 677
>ref|XP_869994.3| PREDICTED: nuclear RNA export factor 2 [Bos taurus].
Length = 637
Score = 479 bits (1232), Expect(2) = e-137
Identities = 247/462 (53%), Positives = 317/462 (68%)
Frame = +2
Query: 365 WHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNWFKITIPYGRKYDKSWLLGMIQSKC 544
W I VTV + P R +QDG +WFK+TIP+G+KYDK WL+ IQS C
Sbjct: 102 WRREGNICVTV--WGNGKPVMRKMRENTQDGAQGSWFKVTIPHGKKYDKMWLMNSIQSLC 159
Query: 545 SVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDREXXXXXXXXXXXXXXHTVQNE 724
SV FTP++FHY A+FFV+ ASTASAL V+YKI D E ++V+N+
Sbjct: 160 SVCFTPVDFHYVKNGARFFVQKASTASALMDVSYKIYDEENQKIPIFVNPSAVPYSVRNK 219
Query: 725 LKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLVAQNIDVVLNRRSCMAAALRXXXXX 904
L+PE++E+LKL +KR+D SQQ+LDL+ LR DP+L+ +I+++LN+R+CMAAAL+
Sbjct: 220 LRPEKMEKLKLAFNKRFDVSQQSLDLQKLRFDPNLMGHDIEIILNQRNCMAAALQIIKKN 279
Query: 905 XXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 1084
KLY LD LS+IV P +KILNLS NEL S EL+K+KGLKLEELWL
Sbjct: 280 FPELLSLNLSCNKLYHLDGLSDIVHMVPTIKILNLSNNELNSMWELNKMKGLKLEELWLR 339
Query: 1085 GNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTMLPPCKGSYFGTETL 1264
GN LC+ F DQSTY+SA+ E FPKLLRLDG ELP + D P P K + +TL
Sbjct: 340 GNPLCNRFPDQSTYLSAVIECFPKLLRLDGQELPSTVVTDSHPPCATKPSKENNKEPDTL 399
Query: 1265 KNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPFIPQNPARSNLAEYFKDSRNVK 1444
KN++L FL+QYY +YDSG+R LL AYH AC SL+IPF ++P S+L YFKDSRN+K
Sbjct: 400 KNMILQFLKQYYLIYDSGNRYGLLSAYHHKACFSLTIPFHSEDPGLSSLCAYFKDSRNMK 459
Query: 1445 KLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSFVVDISAQTSTLLCFSVNGVFKEVD 1624
K+KDP+LR + LKHT ++V L LPKTQHD++SF+VD+ QT T+LCFSVNG+FKEV+
Sbjct: 460 KVKDPNLRVQQLKHTNSDIVRALCMLPKTQHDLSSFLVDMWFQTGTMLCFSVNGMFKEVE 519
Query: 1625 GKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNASPDEIQ 1750
G S++ +RAFTRTF+ P S+S LCIVNDELFV A P Q
Sbjct: 520 GGSQECVRAFTRTFIITPTSSSSLCIVNDELFVMEARPKNTQ 561
Score = 30.4 bits (67), Expect(2) = e-137
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3
Query: 1812 EQQEMLQAFSTQSGM 1856
EQQ+M+QAFSTQSGM
Sbjct: 582 EQQQMVQAFSTQSGM 596
>ref|XP_002699844.1| PREDICTED: nuclear RNA export factor 3-like [Bos taurus].
Length = 544
Score = 397 bits (1019), Expect(2) = e-110
Identities = 213/462 (46%), Positives = 295/462 (63%)
Frame = +2
Query: 365 WHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNWFKITIPYGRKYDKSWLLGMIQSKC 544
+ ++ ++H+ + ++ P ER Q+ T +WFKI IP+G KYD+ WLL +IQ +C
Sbjct: 64 FQKQEQMHINMETKQK--PSERRMERDRQNETLGSWFKIIIPFGIKYDEKWLLDLIQKEC 121
Query: 545 SVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDREXXXXXXXXXXXXXXHTVQNE 724
SVPF P+EFHYE +AQFFVE+A+ A ALK VN KI + + +VQ
Sbjct: 122 SVPFIPVEFHYEKMQAQFFVENANIAGALKNVNGKIFNEDNEKISIFVEPCDAPKSVQKA 181
Query: 725 LKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLVAQNIDVVLNRRSCMAAALRXXXXX 904
LK E+VEQ+KL ++K YD QQ+LD++ L P + + V + + S + + +
Sbjct: 182 LKSEKVEQMKLTINKPYDVHQQSLDIQRLLFGPGMA---VAVTVGQLSSLDQSNK----- 233
Query: 905 XXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 1084
K Y + LS I++ A + K LNLS E+KS E+DK + L+ E +W+D
Sbjct: 234 ------------KPYMVHSLSTIMENASHTKNLNLSNTEVKSAGEMDKGQQLEPEGMWVD 281
Query: 1085 GNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTMLPPCKGSYFGTETL 1264
N C T D+ST IS I E FP+LL LDG E EAP LP CKGS+FG++ L
Sbjct: 282 RNATCTTSPDKSTNISTILELFPRLLSLDGQETLSGSKCATEAPKCLPTCKGSFFGSDEL 341
Query: 1265 KNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPFIPQNPARSNLAEYFKDSRNVK 1444
K+L+L FLQQYY ++D GDRQ LL AYH+ AC SL+IPF ++P S++ YFK+SRN+K
Sbjct: 342 KSLILQFLQQYYLIHDYGDRQGLLCAYHEEACFSLTIPFHFKDPGPSSMCAYFKNSRNMK 401
Query: 1445 KLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSFVVDISAQTSTLLCFSVNGVFKEVD 1624
KLKDP LRF+LLKHT+ ++V L LPKTQHD+ SF+VD+ QT T+LCFSVNGVFKEV+
Sbjct: 402 KLKDPDLRFQLLKHTKCDIVHALCGLPKTQHDLKSFMVDMWFQTQTMLCFSVNGVFKEVE 461
Query: 1625 GKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNASPDEIQ 1750
G+ +R+FTRTF+ P ++S CIVND+L V + SP + +
Sbjct: 462 GRFPGCVRSFTRTFITTPATSSSFCIVNDKLLVSDFSPKKTE 503
Score = 23.5 bits (49), Expect(2) = e-110
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3
Query: 1812 EQQEMLQAFSTQSG 1853
EQQ+M+Q FS QSG
Sbjct: 523 EQQKMVQDFSIQSG 536
>ref|XP_601830.4| PREDICTED: nuclear RNA export factor 3-like [Bos taurus].
Length = 544
Score = 397 bits (1019), Expect(2) = e-110
Identities = 213/462 (46%), Positives = 295/462 (63%)
Frame = +2
Query: 365 WHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNWFKITIPYGRKYDKSWLLGMIQSKC 544
+ ++ ++H+ + ++ P ER Q+ T +WFKI IP+G KYD+ WLL +IQ +C
Sbjct: 64 FQKQEQMHINMETKQK--PSERRMERDRQNETLGSWFKIIIPFGIKYDEKWLLDLIQKEC 121
Query: 545 SVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDREXXXXXXXXXXXXXXHTVQNE 724
SVPF P+EFHYE +AQFFVE+A+ A ALK VN KI + + +VQ
Sbjct: 122 SVPFIPVEFHYEKMQAQFFVENANIAGALKNVNGKIFNEDNEKISIFVEPCDAPKSVQKA 181
Query: 725 LKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLVAQNIDVVLNRRSCMAAALRXXXXX 904
LK E+VEQ+KL ++K YD QQ+LD++ L P + + V + + S + + +
Sbjct: 182 LKSEKVEQMKLTINKPYDVHQQSLDIQRLLFGPGMA---VAVTVGQLSSLDQSNK----- 233
Query: 905 XXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 1084
K Y + LS I++ A + K LNLS E+KS E+DK + L+ E +W+D
Sbjct: 234 ------------KPYMVHSLSTIMENASHTKNLNLSNTEVKSAGEMDKGQQLEPEGMWVD 281
Query: 1085 GNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTMLPPCKGSYFGTETL 1264
N C T D+ST IS I E FP+LL LDG E EAP LP CKGS+FG++ L
Sbjct: 282 RNATCTTSPDKSTNISTILELFPRLLSLDGQETLSGSKCATEAPKCLPTCKGSFFGSDEL 341
Query: 1265 KNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPFIPQNPARSNLAEYFKDSRNVK 1444
K+L+L FLQQYY ++D GDRQ LL AYH+ AC SL+IPF ++P S++ YFK+SRN+K
Sbjct: 342 KSLILQFLQQYYLIHDYGDRQGLLCAYHEEACFSLTIPFHFKDPGPSSMCAYFKNSRNMK 401
Query: 1445 KLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSFVVDISAQTSTLLCFSVNGVFKEVD 1624
KLKDP LRF+LLKHT+ ++V L LPKTQHD+ SF+VD+ QT T+LCFSVNGVFKEV+
Sbjct: 402 KLKDPDLRFQLLKHTKCDIVHALCGLPKTQHDLKSFMVDMWFQTQTMLCFSVNGVFKEVE 461
Query: 1625 GKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNASPDEIQ 1750
G+ +R+FTRTF+ P ++S CIVND+L V + SP + +
Sbjct: 462 GRFPGCVRSFTRTFITTPATSSSFCIVNDKLLVSDFSPKKTE 503
Score = 23.5 bits (49), Expect(2) = e-110
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3
Query: 1812 EQQEMLQAFSTQSG 1853
EQQ+M+Q FS QSG
Sbjct: 523 EQQKMVQDFSIQSG 536
>ref|XP_002699887.1| PREDICTED: nuclear RNA export factor 3-like [Bos taurus].
Length = 700
Score = 370 bits (949), Expect = e-102
Identities = 216/555 (38%), Positives = 304/555 (54%), Gaps = 2/555 (0%)
Frame = +2
Query: 95 APARCAMADEGKSYNEHDDRVSFPQRRKKGRGPFR--WKCXXXXXXXXXXXXXXXXXXLE 268
+P ++ +G+ + E+ D+V+ QRR + G +R + C +
Sbjct: 160 SPLTLELSHQGR-FQEYTDKVNSLQRRARSSGIYRRQYACWSEPVTSQ-----------Q 207
Query: 269 EDDRDVAVSDAQDVXXXXXXXXXXXXXXXGDGWHERSRIHVTVPLRRDRVPPERGGAGTS 448
+ DRD SDA+ + + ++HV + D+ PPER
Sbjct: 208 QQDRDSKESDARMDIQGRYAPYAIPSHHWRSSFQRKDQMHVN--METDQKPPERTMKTNR 265
Query: 449 QDGTSKNWFKITIPYGRKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASA 628
QD T +WFKI IP+G KYD+ WL+ +IQ KCSVPFT +EFHYE +AQFFVE+A+ A A
Sbjct: 266 QDETLGSWFKIIIPFGTKYDEKWLMNLIQKKCSVPFTAVEFHYEKMQAQFFVENANVACA 325
Query: 629 LKAVNYKILDREXXXXXXXXXXXXXXHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKG 808
LK V+ KI + + +VQ L E++EQ+K
Sbjct: 326 LKNVSGKICNEDNEKISIFVEPCDAPESVQKTLTSEKLEQIKF----------------- 368
Query: 809 LRTDPDLVAQNIDVVLNRRSCMAAALRXXXXXXXXXXXXXXXXXKLYRLDDLSNIVQKAP 988
DL+ + I + NRR+ MAA+L K Y + LS I++ A
Sbjct: 369 ---PGDLITRGIGMTWNRRNSMAASLHVYPGIRPMLSSLYLSNKKPYLMHGLSTIMEIAS 425
Query: 989 NLKILNLSGNELKSERELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAIRERFPKLLRL 1168
N + LNLS E+K E+DK L+ E + D + +C TFRD+ST +S + E FP++L L
Sbjct: 426 NTENLNLSNTEVKIAGEMDKGHQLEPEGVCADRSAVCTTFRDKSTNMSTLLELFPRILSL 485
Query: 1169 DGHELPPPIAFDVEAPTMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYH 1348
DG E VEAP LP KGS+ G++ + + +L FLQ YY ++D GDRQ LL YH
Sbjct: 486 DGQETLSGSKCAVEAPKCLPMYKGSFSGSDQVNSQILQFLQHYYLIHDYGDRQGLLGFYH 545
Query: 1349 DGACCSLSIPFIPQNPARSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPK 1528
D AC L+IPF ++ S++ YF D+RN+K LKDP+ R +++KHT+ ++V L LPK
Sbjct: 546 DEACFFLTIPFHSKDSGLSSMCAYFLDNRNMKTLKDPNPRVQMMKHTKHDIVHALCALPK 605
Query: 1529 TQHDINSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPGSNSGLCIVN 1708
QHD +SF VD+ T T+ CFSV+GVFKEV+G S+ + AFTRTF P S+S CIVN
Sbjct: 606 IQHDFSSFEVDMCFHTETMFCFSVSGVFKEVEGISQGCVCAFTRTFTTTPTSSSSFCIVN 665
Query: 1709 DELFVRNASPDEIQR 1753
DELF+R ASP E QR
Sbjct: 666 DELFIREASPSEAQR 680
>ref|NP_001071520.1| nuclear RNA export factor 3 [Bos taurus].
Length = 529
Score = 367 bits (943), Expect = e-101
Identities = 214/540 (39%), Positives = 296/540 (54%), Gaps = 2/540 (0%)
Frame = +2
Query: 140 EHDDRVSFPQRRKKGRGPFR--WKCXXXXXXXXXXXXXXXXXXLEEDDRDVAVSDAQDVX 313
EH D+V QRR + G +R + C ++ DRD SDA V
Sbjct: 2 EHTDKVKSLQRRAQSSGIYRRQYACWSEPVTSQ-----------QQQDRDSKESDAHMVI 50
Query: 314 XXXXXXXXXXXXXXGDGWHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNWFKITIPY 493
+ + ++HV + D+ PPER QD T ++WFKI IP+
Sbjct: 51 QGRYAPYAIPSHHWRSSFQRKDQMHVN--MESDQKPPERTMKTNRQDETLESWFKIIIPF 108
Query: 494 GRKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDREXXX 673
G KYD+ WL+ +IQ KCSVPFT +EFHYE +AQFFVE+A+ A ALK V+ KI + +
Sbjct: 109 GIKYDEKWLMNLIQKKCSVPFTAVEFHYEKMQAQFFVENANVACALKNVSGKIFNEDNEK 168
Query: 674 XXXXXXXXXXXHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLVAQNIDVV 853
+VQ L E++E++K DL+ + I +
Sbjct: 169 ISIFVEPCDAPQSVQKTLTCEKLEKIKF--------------------PGDLITRGIGMT 208
Query: 854 LNRRSCMAAALRXXXXXXXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLSGNELKSE 1033
N R+ MAA+L KLY + LS I++ + ++ LNLS E+K
Sbjct: 209 WNLRNSMAASLHVYPGIRPMLSSLYLSNKKLYLVHGLSTIMEISSTMENLNLSNTEVKIA 268
Query: 1034 RELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEA 1213
E+D L+ E + D + +C TFRD+ST +S + E FP+LL LDG E VEA
Sbjct: 269 GEMDTGHQLEPEGMCADRSAVCTTFRDESTNMSTLLELFPRLLSLDGQETLSGSKCAVEA 328
Query: 1214 PTMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPFIPQN 1393
P LP KGS+ G++ + + +L FLQ YY ++D GDRQ LL YH+ AC L+IPF ++
Sbjct: 329 PKCLPMYKGSFSGSDQVNSQILQFLQHYYLIHDYGDRQGLLGFYHEEACFFLTIPFHSKD 388
Query: 1394 PARSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSFVVDISAQ 1573
S++ YF D+RN+K LKDP+ R +++KHT+ ++V L LPKTQHD +SF VD+
Sbjct: 389 SGLSSMCAYFLDNRNMKTLKDPNPRVQMMKHTKHDIVRALCALPKTQHDFSSFEVDMCFH 448
Query: 1574 TSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNASPDEIQR 1753
T T+ CFSV+GVFKEV+G S+ + AFTRTF P S+S CIVNDELFVR ASP E QR
Sbjct: 449 TETMFCFSVSGVFKEVEGISQGCVCAFTRTFTTTPTSSSSFCIVNDELFVREASPSEAQR 508
>ref|XP_001250763.3| PREDICTED: nuclear RNA export factor 3-like, partial [Bos taurus].
Length = 526
Score = 365 bits (937), Expect = e-101
Identities = 213/539 (39%), Positives = 295/539 (54%), Gaps = 2/539 (0%)
Frame = +2
Query: 143 HDDRVSFPQRRKKGRGPFR--WKCXXXXXXXXXXXXXXXXXXLEEDDRDVAVSDAQDVXX 316
+ D+V+ QRR + G +R + C ++ DRD SDA+
Sbjct: 1 YTDKVNSLQRRARSSGIYRRQYACWSEPVTSQ-----------QQQDRDSKESDARMDIQ 49
Query: 317 XXXXXXXXXXXXXGDGWHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNWFKITIPYG 496
+ + ++HV + D+ PPER QD T +WFKI IP+G
Sbjct: 50 GRYAPYAIPSHHWRSSFQRKDQMHVN--METDQKPPERTMKTNRQDETLGSWFKIIIPFG 107
Query: 497 RKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDREXXXX 676
KYD+ WL+ +IQ KCSVPFT +EFHYE +AQFFVE+A+ A ALK V+ KI + +
Sbjct: 108 TKYDEKWLMNLIQKKCSVPFTAVEFHYEKMQAQFFVENANVACALKNVSGKICNEDNEKI 167
Query: 677 XXXXXXXXXXHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLVAQNIDVVL 856
+VQ L E++EQ+K DL+ + I +
Sbjct: 168 SIFVEPCDAPESVQKTLTSEKLEQIKF--------------------PGDLITRGIGMTW 207
Query: 857 NRRSCMAAALRXXXXXXXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLSGNELKSER 1036
NRR+ MAA+L K Y + LS I++ A N + LNLS E+K
Sbjct: 208 NRRNSMAASLHVYPGIRPMLSSLYLSNKKPYLMHGLSTIMEIASNTENLNLSNTEVKIAG 267
Query: 1037 ELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAP 1216
E+DK L+ E + D + +C TFRD+ST +S + E FP++L LDG E VEAP
Sbjct: 268 EMDKGHQLEPEGVCADRSAVCTTFRDKSTNMSTLLELFPRILSLDGQETLSGSKCAVEAP 327
Query: 1217 TMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPFIPQNP 1396
LP KGS+ G++ + + +L FLQ YY ++D GDRQ LL YHD AC L+IPF ++
Sbjct: 328 KCLPMYKGSFSGSDQVNSQILQFLQHYYLIHDYGDRQGLLGFYHDEACFFLTIPFHSKDS 387
Query: 1397 ARSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSFVVDISAQT 1576
S++ YF D+RN+K LKDP+ R +++KHT+ ++V L LPK QHD +SF VD+ T
Sbjct: 388 GLSSMCAYFLDNRNMKTLKDPNPRVQMMKHTKHDIVHALCALPKIQHDFSSFEVDMCFHT 447
Query: 1577 STLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNASPDEIQR 1753
T+ CFSV+GVFKEV+G S+ + AFTRTF P S+S CIVNDELF+R ASP E QR
Sbjct: 448 ETMFCFSVSGVFKEVEGISQGCVCAFTRTFTTTPTSSSSFCIVNDELFIREASPSEAQR 506
>ref|XP_002699879.1| PREDICTED: nuclear RNA export factor 3-like [Bos taurus].
Length = 2673
Score = 276 bits (705), Expect = 6e-74
Identities = 163/361 (45%), Positives = 212/361 (58%), Gaps = 27/361 (7%)
Frame = +2
Query: 749 LKLIMSKRYDGSQQALDLKGLRTDPDLVAQNIDVVLNRRSCMAAALRXXXXXXXXXXXXX 928
L+L M+K YD QQALD++ LR P + V + S + + +
Sbjct: 2165 LQLTMNKPYDACQQALDIQRLRFGPGMPTV---VTAGQLSSLYLSNK------------- 2208
Query: 929 XXXXKLYRLDDLSNIVQKAPNLKILNLSGNEL---------------------------K 1027
K Y + LS I + A K LNLS E+ K
Sbjct: 2209 ----KPYLVHGLSTIKEIASTTKNLNLSNTEVRWGTQILLRKECGRPYGWRQTKENGFVK 2264
Query: 1028 SERELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDV 1207
E+DK L+ E + D + +C TFRD+S +S + E FP+LL LDG E V
Sbjct: 2265 IAGEMDKGHQLEPEGMCADRSAVCTTFRDESANMSTLLELFPRLLSLDGQETLSGSKCAV 2324
Query: 1208 EAPTMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPFIP 1387
EAP LP CKGS+FG+E LK+L+L FLQQYY ++D GDRQ LL AYH+ AC SL+IPF P
Sbjct: 2325 EAPKCLPMCKGSFFGSEELKSLILKFLQQYYLIHDYGDRQGLLGAYHEEACFSLAIPFQP 2384
Query: 1388 QNPARSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSFVVDIS 1567
++PA S++ YF D+RN+K LKDP+LR +++KHT+ ++V L LPKTQHD +SFVVD+
Sbjct: 2385 KDPALSSMCAYFLDNRNMKILKDPNLRVQMMKHTKHDIVHTLCALPKTQHDFSSFVVDMC 2444
Query: 1568 AQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNASPDEI 1747
Q +LCFSVNGVFKEV+G S+ + AFTRTF P S+S CIVNDELFVR ASP E
Sbjct: 2445 FQMEMMLCFSVNGVFKEVEGISQGCVCAFTRTFTTTPTSSSSFCIVNDELFVREASPIEA 2504
Query: 1748 Q 1750
Q
Sbjct: 2505 Q 2505
Score = 141 bits (356), Expect = 2e-33
Identities = 83/230 (36%), Positives = 119/230 (51%)
Frame = +2
Query: 140 EHDDRVSFPQRRKKGRGPFRWKCXXXXXXXXXXXXXXXXXXLEEDDRDVAVSDAQDVXXX 319
EH D+V+ QRR + G +R + +++D+D SDA
Sbjct: 1131 EHTDKVNSLQRRARSSGIYRRQYAYWSEPVTSQ---------QQEDKDSKESDAHMDIQG 1181
Query: 320 XXXXXXXXXXXXGDGWHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNWFKITIPYGR 499
+ + ++HV ++ D+ PPE QD T +WFKI IP+G
Sbjct: 1182 RYAPYAIPSHHWRSSFQTKDQMHVN--MQTDQKPPEGTMKTNRQDETLGSWFKIIIPFGI 1239
Query: 500 KYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDREXXXXX 679
KYD+ WL+ +IQ KCSVPFT +EFHYE +AQFFVE+A+ A ALK V+ KI + +
Sbjct: 1240 KYDEKWLMNLIQKKCSVPFTAVEFHYEKMQAQFFVENANVACALKNVSGKICNEDNEKIS 1299
Query: 680 XXXXXXXXXHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDL 829
+VQ L E++EQ+KL M+K YD QQALD++ LR P +
Sbjct: 1300 IFVEPCDAPESVQKTLTSEKLEQIKLTMNKPYDACQQALDIQRLRFGPGM 1349
Score = 105 bits (261), Expect = 2e-22
Identities = 56/127 (44%), Positives = 75/127 (59%), Gaps = 12/127 (9%)
Frame = +2
Query: 485 IPYGRKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRE 664
IP+G KYD+ WL+ +IQ KCSVPFT +EFHYE +AQFFVE+A+ A ALK V+ KI + +
Sbjct: 1358 IPFGIKYDEKWLMNLIQKKCSVPFTAVEFHYEKMQAQFFVENANVACALKNVSGKICNED 1417
Query: 665 XXXXXXXXXXXXXXHTVQNELKPEQVEQLK------------LIMSKRYDGSQQALDLKG 808
+VQ L E++EQ+K L M+K YD QQALD++
Sbjct: 1418 NEKISIFVEPCDAPQSVQKTLTSEKLEQIKTQARWTPSLTLQLTMNKPYDACQQALDIQR 1477
Query: 809 LRTDPDL 829
LR P +
Sbjct: 1478 LRFGPGM 1484
Score = 103 bits (258), Expect = 4e-22
Identities = 55/126 (43%), Positives = 74/126 (58%), Gaps = 12/126 (9%)
Frame = +2
Query: 485 IPYGRKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRE 664
IP+G KYD+ WL+ +IQ KCSVPFT +EFHYE +AQFFVE+A+ A ALK V+ KI + +
Sbjct: 1006 IPFGIKYDEKWLMNLIQKKCSVPFTAVEFHYEKMQAQFFVENANVACALKNVSGKICNED 1065
Query: 665 XXXXXXXXXXXXXXHTVQNELKPEQVEQLK------------LIMSKRYDGSQQALDLKG 808
+VQ L E++EQ+K L M+K YD QQ LD++
Sbjct: 1066 NEKISIFVEPCDAPESVQKTLTSEKLEQIKTQARWTPSLTLQLTMNKPYDACQQGLDIQR 1125
Query: 809 LRTDPD 826
LR P+
Sbjct: 1126 LRFGPE 1131
Score = 90.5 bits (223), Expect = 5e-18
Identities = 43/100 (43%), Positives = 62/100 (62%)
Frame = +2
Query: 479 ITIPYGRKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILD 658
+ IP+ KYD+ WL+ +IQ KCSVPFT +EFHYE +AQFFV++A+ A ALK V+ KI +
Sbjct: 851 VEIPFDIKYDEKWLMNLIQKKCSVPFTAVEFHYEKMQAQFFVKNANVACALKNVSGKICN 910
Query: 659 REXXXXXXXXXXXXXXHTVQNELKPEQVEQLKLIMSKRYD 778
+ +VQ L E++EQ+K+ +YD
Sbjct: 911 EDNEKISIFVEPCDAPESVQKTLTSEKLEQIKIPFGIKYD 950
Score = 85.1 bits (209), Expect = 2e-16
Identities = 39/69 (56%), Positives = 52/69 (75%)
Frame = +2
Query: 458 TSKNWFKITIPYGRKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKA 637
TS+ +I IP+G KYD+ WL+ +IQ KCSVPFT +EFHYE +AQFFVE+A+ A ALK
Sbjct: 934 TSEKLEQIKIPFGIKYDEKWLMNLIQKKCSVPFTAVEFHYEKMQAQFFVENANVACALKN 993
Query: 638 VNYKILDRE 664
V+ KI + +
Sbjct: 994 VSGKICNED 1002
Score = 77.0 bits (188), Expect = 5e-14
Identities = 54/196 (27%), Positives = 87/196 (44%), Gaps = 5/196 (2%)
Frame = +2
Query: 5 KCGGIRRRSTSAG---RAWAFGRLPVSRAATEPAPARCAMADEGKSYNEHDDRVSFPQRR 175
K ++RR+ S+G R +A PV+ + ++ M ++H D+V+ QRR
Sbjct: 645 KVKSLQRRARSSGITQRQYACWSEPVTSQQQQDRDSKKVMLVWTSKEDKHTDKVNSLQRR 704
Query: 176 KKGRG--PFRWKCXXXXXXXXXXXXXXXXXXLEEDDRDVAVSDAQDVXXXXXXXXXXXXX 349
+ G ++ C ++ DRD SDA+
Sbjct: 705 ARSSGITQRQYACWSEPVTSQ-----------QQQDRDSKESDARMDIQGRYAPYAIPSH 753
Query: 350 XXGDGWHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNWFKITIPYGRKYDKSWLLGM 529
+ + ++HV + ++ PPER QD T +WFKI IP+G KYD+ WL+ +
Sbjct: 754 HWRSSFQRKDQMHVN--METEQKPPERTMKTNRQDETLGSWFKIIIPFGIKYDEKWLMNL 811
Query: 530 IQSKCSVPFTPIEFHY 577
IQ KCSVPF +E +
Sbjct: 812 IQKKCSVPFIAVEIPF 827
Score = 61.6 bits (148), Expect = 2e-09
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Frame = +2
Query: 566 EFHYENTRAQFFVEDASTASALKAVNYKILDREXXXXXXXXXXXXXXHTVQNELKPEQVE 745
+FHYE +AQFFVE+A+ A ALK V+ KI + + +VQ L E++E
Sbjct: 1599 QFHYEKMQAQFFVENANVACALKNVSGKICNEDNEKISIFVEPCDAPESVQKTLTSEKLE 1658
Query: 746 QLK------------LIMSKRYDGSQQALDLKGLRTDPDL 829
Q+K L M+K YD QQ LD++ LR P +
Sbjct: 1659 QIKTQARWTPSLTLQLTMNKPYDACQQGLDIQRLRFGPGM 1698
Score = 61.6 bits (148), Expect = 2e-09
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Frame = +2
Query: 566 EFHYENTRAQFFVEDASTASALKAVNYKILDREXXXXXXXXXXXXXXHTVQNELKPEQVE 745
+FHYE +AQFFVE+A+ A ALK V+ KI + + +VQ L E++E
Sbjct: 1706 QFHYEKMQAQFFVENANVACALKNVSGKICNEDNEKISIFVEPCDAPESVQKTLTSEKLE 1765
Query: 746 QLK------------LIMSKRYDGSQQALDLKGLRTDPDL 829
Q+K L M+K YD QQ LD++ LR P +
Sbjct: 1766 QIKTQARWTPSLTLQLTMNKPYDACQQGLDIQRLRFGPGM 1805
Score = 61.2 bits (147), Expect = 3e-09
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Frame = +2
Query: 566 EFHYENTRAQFFVEDASTASALKAVNYKILDREXXXXXXXXXXXXXXHTVQNELKPEQVE 745
+FHYE +AQFFVE+A+ A ALK V+ KI + + +VQ L E++E
Sbjct: 1492 QFHYEKMQAQFFVENANVACALKNVSGKICNEDNEKISIFVEPCDAPESVQKTLTSEKLE 1551
Query: 746 QLK------------LIMSKRYDGSQQALDLKGLRTDPDL 829
Q+K L M+K YD QQALD++ L P +
Sbjct: 1552 QIKTQARWTPSLTLQLTMNKPYDACQQALDIQRLHFGPGM 1591
Score = 44.3 bits (103), Expect(2) = 4e-06
Identities = 20/38 (52%), Positives = 29/38 (76%)
Frame = +2
Query: 1460 SLRFRLLKHTRLNVVAFLNELPKTQHDINSFVVDISAQ 1573
+LR +++KHT+ ++V L LPKTQHD +SFVVD+ Q
Sbjct: 2524 NLRVQMMKHTKHDIVHTLCALPKTQHDFSSFVVDMCFQ 2561
Score = 25.8 bits (55), Expect(2) = 4e-06
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 1620 WMENLGTLCEPLPGRSWLFLAAIQG 1694
W E L +C P PG S L L A+ G
Sbjct: 2563 WKERLLAVCVPSPGPSLLPLPALPG 2587
>ref|XP_869870.4| PREDICTED: nuclear RNA export factor 3-like [Bos taurus].
Length = 440
Score = 159 bits (402), Expect = 8e-39
Identities = 107/334 (32%), Positives = 157/334 (47%)
Frame = +2
Query: 122 EGKSYNEHDDRVSFPQRRKKGRGPFRWKCXXXXXXXXXXXXXXXXXXLEEDDRDVAVSDA 301
E K+ +H D+V+ QRR + G +R + +++D+D SDA
Sbjct: 52 EKKTPKKHTDKVNSLQRRARSSGIYRRQYAYWSEPVTSQ---------QQEDKDSKESDA 102
Query: 302 QDVXXXXXXXXXXXXXXXGDGWHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNWFKI 481
+ + ++HV ++ D+ PPE QD T +WFKI
Sbjct: 103 HMDIQGRYAPYAIPSHHWRSSFQTKDQMHVN--MQTDQKPPEGTMKTNRQDETLGSWFKI 160
Query: 482 TIPYGRKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDR 661
IP+G KYD+ WL+ +IQ KCSVPFT +EFHYE +AQFFVE+A+ A ALK V+ KI +
Sbjct: 161 IIPFGTKYDEKWLMNLIQKKCSVPFTAVEFHYEKMQAQFFVENANVACALKNVSSKIFNE 220
Query: 662 EXXXXXXXXXXXXXXHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLVAQN 841
+ +VQ L E++EQ+K DL+ +
Sbjct: 221 DNEKISIFVEPCDAPESVQKTLTSEKLEQIKF--------------------PGDLITCD 260
Query: 842 IDVVLNRRSCMAAALRXXXXXXXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLSGNE 1021
I + NRR+ MAA+L K Y + LS I++ A N + LNLS E
Sbjct: 261 IGMTGNRRNSMAASLHVYPGIRPMLSSLYLSNKKPYLMHGLSTIMEIASNTENLNLSNTE 320
Query: 1022 LKSERELDKIKGLKLEELWLDGNTLCDTFRDQST 1123
+K E+DK L+ E + D + +C TFRD+ST
Sbjct: 321 VKIAGEMDKGHQLEPEGVCADRSAVCTTFRDKST 354
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 72,094,116
Number of extensions: 2002538
Number of successful extensions: 8250
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 8201
Number of HSP's successfully gapped: 27
Length of query: 635
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 527
Effective length of database: 14,107,870
Effective search space: 7434847490
Effective search space used: 7434847490
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003388
(1905 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540901.2| PREDICTED: similar to nuclear RNA export factor... 879 0.0
Alignment gi|XP_852246.1| PREDICTED: similar to nuclear RNA export factor... 547 e-158
Alignment gi|XP_549146.2| PREDICTED: similar to nuclear RNA export factor... 547 e-158
Alignment gi|XP_549144.2| PREDICTED: similar to nuclear RNA export factor... 545 e-158
Alignment gi|XP_867514.1| PREDICTED: similar to nuclear RNA export factor... 495 e-140
Alignment gi|XP_851169.1| PREDICTED: similar to nuclear RNA export factor... 453 e-127
Alignment gi|XP_548562.2| PREDICTED: similar to nuclear RNA export factor... 369 e-103
Alignment gi|XP_867495.1| PREDICTED: similar to nuclear RNA export factor... 353 e-100
Alignment gi|XP_852289.1| PREDICTED: similar to nuclear RNA export factor... 330 2e-90
>ref|XP_540901.2| PREDICTED: similar to nuclear RNA export factor 1 isoform 1 [Canis
familiaris].
Length = 586
Score = 879 bits (2272), Expect(2) = 0.0
Identities = 445/547 (81%), Positives = 463/547 (84%)
Frame = +2
Query: 113 MADEGKSYNEHDDRVSFPQRRKKGRGPFRWKCXXXXXXXXXXXXXXXXXXLEEDDRDVAV 292
MADEGK+YNEHDDRVSFPQRRKKGRGPFRWK LEEDDRDVA+
Sbjct: 1 MADEGKAYNEHDDRVSFPQRRKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDRDVAM 60
Query: 293 SDAQDVXXXXXXXXXXXXXXXGDGWHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNW 472
SDAQDV GD WH+R RIHVTV RRDR+ PERGGAGTSQDGTSKNW
Sbjct: 61 SDAQDVPRIRHNPYPPRPNRRGDSWHDRDRIHVTV--RRDRILPERGGAGTSQDGTSKNW 118
Query: 473 FKITIPYGRKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKI 652
FKITIPYGRKYDKSWLL +IQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKI
Sbjct: 119 FKITIPYGRKYDKSWLLSVIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKI 178
Query: 653 LDREXXXXXXXXXXXXXXHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLV 832
LD+E H+VQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLR+DPDLV
Sbjct: 179 LDQENRRISIIINSSVPPHSVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLV 238
Query: 833 AQNIDVVLNRRSCMAAALRXXXXXXXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLS 1012
AQNIDVVLNRRSCMAA LR +LYRLDD+S++VQKAPNLKILNLS
Sbjct: 239 AQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSLVQKAPNLKILNLS 298
Query: 1013 GNELKSERELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPP 1192
GNELKSERELDK+KGLKLEELWLDGN LCDTFRDQSTYI ++ P+L DGHELPPP
Sbjct: 299 GNELKSERELDKVKGLKLEELWLDGNPLCDTFRDQSTYIRSVEMCSPELEPPDGHELPPP 358
Query: 1193 IAFDVEAPTMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLS 1372
IAFDVEAPTMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLS
Sbjct: 359 IAFDVEAPTMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLS 418
Query: 1373 IPFIPQNPARSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSF 1552
IPF PQNPARSNLAEYFKDSRNVKKLKDP+LRFRLLKHTRLNVVAFLNELPKTQHD+NSF
Sbjct: 419 IPFTPQNPARSNLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSF 478
Query: 1553 VVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNA 1732
VVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVP SNSGLCIVNDELFVRNA
Sbjct: 479 VVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPASNSGLCIVNDELFVRNA 538
Query: 1733 SPDEIQR 1753
S DEIQR
Sbjct: 539 SADEIQR 545
Score = 32.7 bits (73), Expect(2) = 0.0
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 1812 EQQEMLQAFSTQSGM 1856
EQQEMLQAFSTQSGM
Sbjct: 565 EQQEMLQAFSTQSGM 579
>ref|XP_852246.1| PREDICTED: similar to nuclear RNA export factor 2 [Canis familiaris].
Length = 615
Score = 547 bits (1410), Expect(2) = e-158
Identities = 288/537 (53%), Positives = 358/537 (66%)
Frame = +2
Query: 140 EHDDRVSFPQRRKKGRGPFRWKCXXXXXXXXXXXXXXXXXXLEEDDRDVAVSDAQDVXXX 319
+++D S Q RKK FR L+EDD V++ + Q+
Sbjct: 8 QNNDDGSSSQGRKKVWSSFRGNFGKRDPHYEHGGYEPQPSHLQEDDETVSMGNVQEDPQV 67
Query: 320 XXXXXXXXXXXXGDGWHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNWFKITIPYGR 499
H IH+TV R + E G +QDGTS +WFKITIPYGR
Sbjct: 68 RHTPYSTRCNKRRVKRHNEGHIHITVWKGRKTLKKEVGE--NTQDGTSGSWFKITIPYGR 125
Query: 500 KYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDREXXXXX 679
KYDK+WL+ IQS CSVPF P++FHY +A+FFV+D TASALK ++Y+I D E
Sbjct: 126 KYDKAWLMNSIQSHCSVPFIPVDFHYVKNQARFFVQDVGTASALKDISYRICDDENRKIS 185
Query: 680 XXXXXXXXXHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLVAQNIDVVLN 859
++V+ +L+PE++EQLKL M+KRYD SQQALDL+ LR DPDLV +ID++LN
Sbjct: 186 IFVNPSTVPYSVRYKLEPEEMEQLKLTMNKRYDVSQQALDLQSLRFDPDLVGHDIDIILN 245
Query: 860 RRSCMAAALRXXXXXXXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLSGNELKSERE 1039
RR+CMAA L+ KLY LD LS+I++ AP +K+LNLS NEL E
Sbjct: 246 RRNCMAATLQIIEENFPELLSLNLSNNKLYGLDGLSDIIEMAPTIKVLNLSKNELNLVWE 305
Query: 1040 LDKIKGLKLEELWLDGNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPT 1219
L K+KGLKLEELWL+GN LCDTF DQ TYISAIR+ FPKLLRLDG ELPPP+ D + P
Sbjct: 306 LSKMKGLKLEELWLEGNPLCDTFPDQPTYISAIRDCFPKLLRLDGQELPPPVIIDADTPC 365
Query: 1220 MLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPFIPQNPA 1399
++ PCK SY G+ETLK+LVL FLQQYY +YDSGDRQ LL AYHD AC SL+I F P++PA
Sbjct: 366 LIKPCKESYKGSETLKSLVLQFLQQYYLIYDSGDRQGLLGAYHDEACFSLAISFNPEDPA 425
Query: 1400 RSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSFVVDISAQTS 1579
S+L EY K+SRN+KKLKD S +LLKHT ++V L LPKTQHD++S VVD+ QT
Sbjct: 426 PSSLCEYSKESRNMKKLKDLSQCVQLLKHTNCDIVCSLCVLPKTQHDLSSLVVDMWFQTE 485
Query: 1580 TLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNASPDEIQ 1750
+LCFSVNGVFKEV+GK + S+RAFTRTF+ P SNS LCIVNDELFVR+A+P E Q
Sbjct: 486 KMLCFSVNGVFKEVEGKFQGSVRAFTRTFIVTPASNSSLCIVNDELFVRDATPGETQ 542
Score = 31.6 bits (70), Expect(2) = e-158
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +3
Query: 1812 EQQEMLQAFSTQSGMK 1859
EQQEM+ AFSTQSGMK
Sbjct: 560 EQQEMVHAFSTQSGMK 575
>ref|XP_549146.2| PREDICTED: similar to nuclear RNA export factor 2 [Canis familiaris].
Length = 615
Score = 547 bits (1410), Expect(2) = e-158
Identities = 288/537 (53%), Positives = 358/537 (66%)
Frame = +2
Query: 140 EHDDRVSFPQRRKKGRGPFRWKCXXXXXXXXXXXXXXXXXXLEEDDRDVAVSDAQDVXXX 319
+++D S Q RKK FR L+EDD V++ + Q+
Sbjct: 8 QNNDDGSSSQGRKKVWSSFRGNFGKRDPHYEHGGYEPQPSHLQEDDETVSMGNVQEDPQV 67
Query: 320 XXXXXXXXXXXXGDGWHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNWFKITIPYGR 499
H IH+TV R + E G +QDGTS +WFKITIPYGR
Sbjct: 68 RHTPYSTRCNKRRVKRHNEGHIHITVWKGRKTLKKEVGE--NTQDGTSGSWFKITIPYGR 125
Query: 500 KYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDREXXXXX 679
KYDK+WL+ IQS CSVPF P++FHY +A+FFV+D TASALK ++Y+I D E
Sbjct: 126 KYDKAWLMNSIQSHCSVPFIPVDFHYVKNQARFFVQDVGTASALKDISYRICDDENRKIS 185
Query: 680 XXXXXXXXXHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLVAQNIDVVLN 859
++V+ +L+PE++EQLKL M+KRYD SQQALDL+ LR DPDLV +ID++LN
Sbjct: 186 IFVNPSTVPYSVRYKLEPEEMEQLKLTMNKRYDVSQQALDLQSLRFDPDLVGHDIDIILN 245
Query: 860 RRSCMAAALRXXXXXXXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLSGNELKSERE 1039
RR+CMAA L+ KLY LD LS+I++ AP +K+LNLS NEL E
Sbjct: 246 RRNCMAATLQIIEENFPELLSLNLSNNKLYGLDGLSDIIEMAPTIKVLNLSKNELNLVWE 305
Query: 1040 LDKIKGLKLEELWLDGNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPT 1219
L K+KGLKLEELWL+GN LCDTF DQ TYISAIR+ FPKLLRLDG ELPPP+ D + P
Sbjct: 306 LSKMKGLKLEELWLEGNPLCDTFPDQPTYISAIRDCFPKLLRLDGQELPPPVIIDADTPC 365
Query: 1220 MLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPFIPQNPA 1399
++ PCK SY G+ETLK+LVL FLQQYY +YDSGDRQ LL AYHD AC SL+I F P++PA
Sbjct: 366 LIKPCKESYKGSETLKSLVLQFLQQYYLIYDSGDRQGLLGAYHDEACFSLAISFNPEDPA 425
Query: 1400 RSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSFVVDISAQTS 1579
S+L EY K+SRN+KKLKD S +LLKHT ++V L LPKTQHD++S VVD+ QT
Sbjct: 426 PSSLCEYSKESRNMKKLKDLSQCVQLLKHTNCDIVCSLCVLPKTQHDLSSLVVDMWFQTE 485
Query: 1580 TLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNASPDEIQ 1750
+LCFSVNGVFKEV+GK + S+RAFTRTF+ P SNS LCIVNDELFVR+A+P E Q
Sbjct: 486 KMLCFSVNGVFKEVEGKFQGSVRAFTRTFIVTPASNSSLCIVNDELFVRDATPGETQ 542
Score = 31.6 bits (70), Expect(2) = e-158
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +3
Query: 1812 EQQEMLQAFSTQSGMK 1859
EQQEM+ AFSTQSGMK
Sbjct: 560 EQQEMVHAFSTQSGMK 575
>ref|XP_549144.2| PREDICTED: similar to nuclear RNA export factor 2 [Canis familiaris].
Length = 592
Score = 545 bits (1404), Expect(2) = e-158
Identities = 287/537 (53%), Positives = 361/537 (67%)
Frame = +2
Query: 140 EHDDRVSFPQRRKKGRGPFRWKCXXXXXXXXXXXXXXXXXXLEEDDRDVAVSDAQDVXXX 319
E++D S PQ RKK F+ L+ED+ +V++ D Q+
Sbjct: 16 EYNDGGSSPQGRKKVWSSFQGNFDKRNSHYERGGYEPQPSHLQEDNENVSMGDVQEDPQV 75
Query: 320 XXXXXXXXXXXXGDGWHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNWFKITIPYGR 499
WH IH+TV RDR +R +QDG S +WFKITIPYGR
Sbjct: 76 RHTPYNTQRNKRRVKWHNEGHIHITV--WRDRKNLKREVEENTQDGISGSWFKITIPYGR 133
Query: 500 KYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDREXXXXX 679
KYDK+WL+ IQ CSVPF P++FHY +A+FFV+D TASALK V+YKI D E
Sbjct: 134 KYDKAWLMNSIQRHCSVPFVPVDFHYIKNQARFFVQDVCTASALKDVSYKIFDEENRKIS 193
Query: 680 XXXXXXXXXHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLVAQNIDVVLN 859
++V+ +L+PE++EQLKL M+KRYD SQQALDL+ LR DPDLV +ID++LN
Sbjct: 194 IFVNPSSVPYSVRYKLEPEEMEQLKLTMNKRYDVSQQALDLQSLRFDPDLVGHDIDIILN 253
Query: 860 RRSCMAAALRXXXXXXXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLSGNELKSERE 1039
RR+CMAA L+ KLY LD LS+I+QKAP +KILNLS NEL E
Sbjct: 254 RRNCMAATLQIIEENFPELLSLNLSNNKLYGLDGLSDIIQKAPRVKILNLSKNELNLVWE 313
Query: 1040 LDKIKGLKLEELWLDGNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPT 1219
L+K+KGL LEELWL+GN LCDTF D+ TYISAIR+ FPKLLRLDG +L PP D + P
Sbjct: 314 LNKMKGLNLEELWLEGNPLCDTFPDKPTYISAIRDCFPKLLRLDGQDLTPPDIIDTDMPY 373
Query: 1220 MLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPFIPQNPA 1399
+ P K SY G+E LKNLVL FLQQYY +YDSG+RQ LL AYHD AC SL+IPF ++P
Sbjct: 374 SIQPSKESYKGSEELKNLVLQFLQQYYLIYDSGNRQGLLGAYHDEACFSLAIPFNSKDPV 433
Query: 1400 RSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSFVVDISAQTS 1579
SNL EYFK++RN+K LKD SL +LLKHT+ +++ L LPKTQHD++SF+VD+ QT
Sbjct: 434 PSNLCEYFKENRNMKNLKDFSLCVQLLKHTKYDILCSLYMLPKTQHDLSSFMVDMWFQTE 493
Query: 1580 TLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNASPDEIQ 1750
+LCFSV+GVF+EV+GKS+ S+RAFTRTF+A P S+S LCIVNDELFVR+A+PDE Q
Sbjct: 494 KMLCFSVSGVFREVEGKSQGSIRAFTRTFIATPVSDSTLCIVNDELFVRDATPDETQ 550
Score = 33.5 bits (75), Expect(2) = e-158
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +3
Query: 1812 EQQEMLQAFSTQSGMK 1859
EQQEM+QAFSTQSGMK
Sbjct: 571 EQQEMVQAFSTQSGMK 586
>ref|XP_867514.1| PREDICTED: similar to nuclear RNA export factor 1 isoform 3 [Canis
familiaris].
Length = 355
Score = 495 bits (1275), Expect = e-140
Identities = 253/342 (73%), Positives = 268/342 (78%)
Frame = +2
Query: 113 MADEGKSYNEHDDRVSFPQRRKKGRGPFRWKCXXXXXXXXXXXXXXXXXXLEEDDRDVAV 292
MADEGK+YNEHDDRVSFPQRRKKGRGPFRWK LEEDDRDVA+
Sbjct: 1 MADEGKAYNEHDDRVSFPQRRKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDRDVAM 60
Query: 293 SDAQDVXXXXXXXXXXXXXXXGDGWHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNW 472
SDAQDV GD WH+R RIHVTV RRDR+ PERGGAGTSQDGTSKNW
Sbjct: 61 SDAQDVPRIRHNPYPPRPNRRGDSWHDRDRIHVTV--RRDRILPERGGAGTSQDGTSKNW 118
Query: 473 FKITIPYGRKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKI 652
FKITIPYGRKYDKSWLL +IQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKI
Sbjct: 119 FKITIPYGRKYDKSWLLSVIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKI 178
Query: 653 LDREXXXXXXXXXXXXXXHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLV 832
LD+E H+VQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLR+DPDLV
Sbjct: 179 LDQENRRISIIINSSVPPHSVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLV 238
Query: 833 AQNIDVVLNRRSCMAAALRXXXXXXXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLS 1012
AQNIDVVLNRRSCMAA LR +LYRLDD+S++VQKAPNLKILNLS
Sbjct: 239 AQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSLVQKAPNLKILNLS 298
Query: 1013 GNELKSERELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAI 1138
GNELKSERELDK+KGLKLEELWLDGN LCDTFRDQSTYI ++
Sbjct: 299 GNELKSERELDKVKGLKLEELWLDGNPLCDTFRDQSTYIRSV 340
>ref|XP_851169.1| PREDICTED: similar to nuclear RNA export factor 2 [Canis familiaris].
Length = 411
Score = 453 bits (1165), Expect = e-127
Identities = 234/422 (55%), Positives = 294/422 (69%)
Frame = +2
Query: 461 SKNWFKITIPYGRKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAV 640
S +WFKITIPYGRKYDK+WL+ IQ CSVPF P++FHY +A+FFV++ TASALK V
Sbjct: 2 SGSWFKITIPYGRKYDKAWLMNSIQRHCSVPFVPVDFHYIKNQARFFVQEVCTASALKDV 61
Query: 641 NYKILDREXXXXXXXXXXXXXXHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTD 820
+YKI D E ++V+ +L+PE++EQLKL M+KR+D SQQALDL+ LR D
Sbjct: 62 SYKICDEENRKISIFVNPSSVPYSVRYKLEPEEMEQLKLTMNKRFDVSQQALDLQSLRFD 121
Query: 821 PDLVAQNIDVVLNRRSCMAAALRXXXXXXXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKI 1000
PDLV +ID++LNRR+CMAA L+ KL+ I
Sbjct: 122 PDLVGHDIDIILNRRNCMAATLQITEENFPELLSLNLSNNKLW----------------I 165
Query: 1001 LNLSGNELKSERELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAIRERFPKLLRLDGHE 1180
LNLS NEL EL+ +KGL LEELWL+GN LCDTF D+STYISAIR+ FPKLLRLDG +
Sbjct: 166 LNLSKNELNLVWELNTMKGLNLEELWLEGNPLCDTFPDKSTYISAIRDCFPKLLRLDGQD 225
Query: 1181 LPPPIAFDVEAPTMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGAC 1360
L PP D + P P K SY G+E LKNLVL FLQ+YY +YDSG+ Q LL AYHD AC
Sbjct: 226 LTPPDIIDTDMPYSTQPSKESYKGSEELKNLVLQFLQRYYLIYDSGNHQGLLGAYHDEAC 285
Query: 1361 CSLSIPFIPQNPARSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPKTQHD 1540
L+I F P++P SNL EYFK++RN+K LKD SL +LLKHT+ +++ L LPKTQHD
Sbjct: 286 FFLAISFKPKDPVPSNLCEYFKENRNMKNLKDFSLCVQLLKHTKYDILCSLYVLPKTQHD 345
Query: 1541 INSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPGSNSGLCIVNDELF 1720
++SF+VD+ Q ++CFSV+GVFKEV+GKS+ +RAFTR F+A P S+S LCIVNDELF
Sbjct: 346 LSSFMVDMWFQMEKMICFSVSGVFKEVEGKSQGFVRAFTRNFIATPVSDSTLCIVNDELF 405
Query: 1721 VR 1726
R
Sbjct: 406 ER 407
>ref|XP_548562.2| PREDICTED: similar to nuclear RNA export factor 3 [Canis familiaris].
Length = 537
Score = 369 bits (947), Expect(2) = e-103
Identities = 215/473 (45%), Positives = 273/473 (57%), Gaps = 19/473 (4%)
Frame = +2
Query: 389 VTVPLRRDRVPPERGGAGTSQDGTSKNWFKITIPYGRKYDKSWLLGMIQSKCSVPFTPIE 568
V + ++ PPER G QD TS +WFKI IP+G KY+++WLL +IQ +CSVPFTP+E
Sbjct: 80 VQANMEGEQKPPERKMKGERQDETSGSWFKIIIPFGIKYEETWLLNLIQGQCSVPFTPVE 139
Query: 569 FHYENTRAQFFVEDASTASALKAVNYKILDRE------------------XXXXXXXXXX 694
FHYE +AQFFVE+AS A ALK+VN KI D
Sbjct: 140 FHYEKMQAQFFVENASIAFALKSVNGKIWDENNETVRAKGMTVASWGQEGKRGVSVFVYP 199
Query: 695 XXXXHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLVAQNIDVVLNRRSCM 874
H+VQ EL E+VEQ KL+ + R P + QN
Sbjct: 200 SDAPHSVQKELMSEKVEQTKLLPLNPSNKKPYQ------RDGPSSIMQNAS--------- 244
Query: 875 AAALRXXXXXXXXXXXXXXXXXKLYRLDDLSNIVQKAPNL-KILNLSGNELKSERELDKI 1051
+ L++ V+ A L K +L E+ + R
Sbjct: 245 -------------------------SIKPLNSEVKSAGELDKSKSLQPEEMSANR----- 274
Query: 1052 KGLKLEELWLDGNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTMLPP 1231
++LC F D+ST IS+I E FPKLL LD E P P + + A LP
Sbjct: 275 ------------SSLCTAFPDKSTNISSILELFPKLLCLDSQESPSPTSIGIAAHKKLPT 322
Query: 1232 CKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPFIPQNPARSNL 1411
CKGS+FG++ LK+L+L FL QYY +YDSGDRQ LL AYHD AC SL+ PF P++PA S+L
Sbjct: 323 CKGSFFGSDALKSLILQFLLQYYLIYDSGDRQGLLSAYHDEACFSLTTPFNPKDPALSSL 382
Query: 1412 AEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSFVVDISAQTSTLLC 1591
EYFK+SRN+KKLKDPSLR +LLK T+ ++V L LPKTQHD++ FVVD+ QT ++C
Sbjct: 383 CEYFKESRNLKKLKDPSLRVQLLKQTKCDIVRSLCVLPKTQHDLSFFVVDMWFQTEMMIC 442
Query: 1592 FSVNGVFKEVDGKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNASPDEIQ 1750
FSVNGVFKEV+G S+DS+RAFTRTF+A P SN LCIVNDELFVR+ASP E Q
Sbjct: 443 FSVNGVFKEVEGMSQDSVRAFTRTFIATPVSNYSLCIVNDELFVRDASPKETQ 495
Score = 26.9 bits (58), Expect(2) = e-103
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +3
Query: 1812 EQQEMLQAFSTQSGM 1856
+QQE++Q FSTQSGM
Sbjct: 516 KQQEVVQTFSTQSGM 530
>ref|XP_867495.1| PREDICTED: similar to nuclear RNA export factor 1 isoform 2 [Canis
familiaris].
Length = 251
Score = 353 bits (905), Expect(2) = e-100
Identities = 173/178 (97%), Positives = 175/178 (98%)
Frame = +2
Query: 1220 MLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPFIPQNPA 1399
MLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPF PQNPA
Sbjct: 1 MLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPFTPQNPA 60
Query: 1400 RSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSFVVDISAQTS 1579
RSNLAEYFKDSRNVKKLKDP+LRFRLLKHTRLNVVAFLNELPKTQHD+NSFVVDISAQTS
Sbjct: 61 RSNLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTS 120
Query: 1580 TLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNASPDEIQR 1753
TLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVP SNSGLCIVNDELFVRNAS DEIQR
Sbjct: 121 TLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPASNSGLCIVNDELFVRNASADEIQR 178
Score = 32.7 bits (73), Expect(2) = e-100
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 1812 EQQEMLQAFSTQSGM 1856
EQQEMLQAFSTQSGM
Sbjct: 198 EQQEMLQAFSTQSGM 212
>ref|XP_852289.1| PREDICTED: similar to nuclear RNA export factor 5 isoform a [Canis
familiaris].
Length = 377
Score = 330 bits (847), Expect = 2e-90
Identities = 183/372 (49%), Positives = 232/372 (62%), Gaps = 2/372 (0%)
Frame = +2
Query: 476 KITIPYGRKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKIL 655
K IPYG KY+K+W++ IQS CSVPFT ++FHY AQFF++DA ASALK +N KI
Sbjct: 22 KFLIPYGIKYNKTWIINSIQSHCSVPFTVVDFHYLKDGAQFFIQDACAASALKDINCKIS 81
Query: 656 DREXXXXXXXXXXXXXXHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLVA 835
D E ++VQN+L PE++EQLKL MSK YD SQ+ALDL LR DP+L+
Sbjct: 82 DEENQKLSIHVSPSAVPYSVQNKLDPEEMEQLKLTMSKHYDISQKALDLHKLRFDPELMD 141
Query: 836 QNIDVVLNRRSCMAAALRXXXXXXXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLSG 1015
++D++LNRR+CMAA L+ KLY+LD LS+IV+ +P +K LNLS
Sbjct: 142 HDMDIILNRRNCMAATLQVIKENFPELLSLNLCKNKLYQLDGLSDIVEMSPTIKSLNLSK 201
Query: 1016 NELKSERELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAIRERFPKLLRL--DGHELPP 1189
NE++S EL KIKGLKLEELWL GN LC+TF +Q TY+SAIR+ FP LL L G LP
Sbjct: 202 NEVQSVWELCKIKGLKLEELWLKGNPLCNTFPNQYTYVSAIRDCFPTLLHLISAGQVLPA 261
Query: 1190 PIAFDVEAPTMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSL 1369
EAP ++ CK SY G+E LKNL+L FL Q
Sbjct: 262 ITVICTEAPQIIKHCKESYKGSEILKNLILQFLLQ------------------------- 296
Query: 1370 SIPFIPQNPARSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINS 1549
+ L EYFKDSR++KK+KDP LR LLKHT+ ++V LN LPKTQHD+NS
Sbjct: 297 -----------NGLEEYFKDSRDIKKVKDPVLRVLLLKHTKYDIVDSLNMLPKTQHDLNS 345
Query: 1550 FVVDISAQTSTL 1585
FVVD+S QT ++
Sbjct: 346 FVVDLSVQTVSM 357
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 75,340,495
Number of extensions: 2066815
Number of successful extensions: 8074
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 8050
Number of HSP's successfully gapped: 18
Length of query: 635
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 526
Effective length of database: 15,240,880
Effective search space: 8016702880
Effective search space used: 8016702880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003388
(1905 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006353.2| nuclear RNA export factor 1 isoform 1 [Homo sap... 883 0.0
Alignment gi|NP_001093156.1| nuclear RNA export factor 2 [Homo sapiens]. 536 e-155
Alignment gi|NP_071336.1| nuclear RNA export factor 2 [Homo sapiens]. 536 e-155
Alignment gi|NP_001074960.1| nuclear RNA export factor 1 isoform 2 [Homo ... 486 e-137
Alignment gi|NP_071335.1| nuclear RNA export factor 3 [Homo sapiens]. 416 e-116
Alignment gi|NP_116564.2| nuclear RNA export factor 5 [Homo sapiens]. 363 e-100
>ref|NP_006353.2| nuclear RNA export factor 1 isoform 1 [Homo sapiens].
Length = 619
Score = 883 bits (2282), Expect(2) = 0.0
Identities = 448/548 (81%), Positives = 467/548 (85%), Gaps = 1/548 (0%)
Frame = +2
Query: 113 MADEGKSYNEHDD-RVSFPQRRKKGRGPFRWKCXXXXXXXXXXXXXXXXXXLEEDDRDVA 289
MADEGKSY+EHDD RV+FPQR+KKGRGPFRWK LEEDD DVA
Sbjct: 1 MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVA 60
Query: 290 VSDAQDVXXXXXXXXXXXXXXXGDGWHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKN 469
+SDAQD GD WH+R RIHVTV RRDR PPERGGAGTSQDGTSKN
Sbjct: 61 MSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTV--RRDRAPPERGGAGTSQDGTSKN 118
Query: 470 WFKITIPYGRKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYK 649
WFKITIPYGRKYDK+WLL MIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYK
Sbjct: 119 WFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYK 178
Query: 650 ILDREXXXXXXXXXXXXXXHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDL 829
ILDRE HT+ NELKPEQVEQLKLIMSKRYDGSQQALDLKGLR+DPDL
Sbjct: 179 ILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDL 238
Query: 830 VAQNIDVVLNRRSCMAAALRXXXXXXXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNL 1009
VAQNIDVVLNRRSCMAA LR +LYRLDD+S+IVQKAPNLKILNL
Sbjct: 239 VAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL 298
Query: 1010 SGNELKSERELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPP 1189
SGNELKSERELDKIKGLKLEELWLDGN+LCDTFRDQSTYISAIRERFPKLLRLDGHELPP
Sbjct: 299 SGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPP 358
Query: 1190 PIAFDVEAPTMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSL 1369
PIAFDVEAPT LPPCKGSYFGTE LK+LVLHFLQQYYA+YDSGDRQ LLDAYHDGACCSL
Sbjct: 359 PIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSL 418
Query: 1370 SIPFIPQNPARSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINS 1549
SIPFIPQNPARS+LAEYFKDSRNVKKLKDP+LRFRLLKHTRLNVVAFLNELPKTQHD+NS
Sbjct: 419 SIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNS 478
Query: 1550 FVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRN 1729
FVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTF+AVP SNSGLCIVNDELFVRN
Sbjct: 479 FVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRN 538
Query: 1730 ASPDEIQR 1753
AS +EIQR
Sbjct: 539 ASSEEIQR 546
Score = 32.7 bits (73), Expect(2) = 0.0
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 1812 EQQEMLQAFSTQSGM 1856
EQQEMLQAFSTQSGM
Sbjct: 566 EQQEMLQAFSTQSGM 580
>ref|NP_001093156.1| nuclear RNA export factor 2 [Homo sapiens].
Length = 626
Score = 536 bits (1382), Expect(2) = e-155
Identities = 267/462 (57%), Positives = 341/462 (73%)
Frame = +2
Query: 365 WHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNWFKITIPYGRKYDKSWLLGMIQSKC 544
WH I +T R+R PPER + +QDG ++NWFK+TIPYG KYDK+WL+ IQS C
Sbjct: 91 WHSEDEIRITT--WRNRKPPERKMSQNTQDGYTRNWFKVTIPYGIKYDKAWLMNSIQSHC 148
Query: 545 SVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDREXXXXXXXXXXXXXXHTVQNE 724
S FTP++FHY RA FFV+DAS ASALK V+YKI D E ++V+N+
Sbjct: 149 SDRFTPVDFHYVRNRACFFVQDASAASALKDVSYKIYDDENQKICIFVNHSTAPYSVKNK 208
Query: 725 LKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLVAQNIDVVLNRRSCMAAALRXXXXX 904
LKP Q+E LKL M+KRY+ SQQALDL+ LR DPDL+ ++ID++LNRR+CMAA L+
Sbjct: 209 LKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKIIERN 268
Query: 905 XXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 1084
KLY+LD LS+I +KAP +K LNLS N+L+S EL K+KGLKLEELWL+
Sbjct: 269 FPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLE 328
Query: 1085 GNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTMLPPCKGSYFGTETL 1264
GN LC TF DQS Y+SAIR+ FPKLLRLDG EL P+ D+++ + PCK ++ G+ETL
Sbjct: 329 GNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETL 388
Query: 1265 KNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPFIPQNPARSNLAEYFKDSRNVK 1444
K+LVL FLQQYY++YDSGDRQ LL AYHD AC SL+IPF P++ A S+L +YF+DSRN+K
Sbjct: 389 KHLVLQFLQQYYSIYDSGDRQGLLGAYHDEACFSLAIPFDPKDSAPSSLCKYFEDSRNMK 448
Query: 1445 KLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSFVVDISAQTSTLLCFSVNGVFKEVD 1624
LKDP L+ LL+ T+ ++V L+ LPKTQHD++S +VD+ QT +LCFSVNGVFKEV+
Sbjct: 449 TLKDPYLKGELLRRTKRDIVDSLSALPKTQHDLSSILVDVWCQTERMLCFSVNGVFKEVE 508
Query: 1625 GKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNASPDEIQ 1750
G+S+ S+ AFTRTF+A PGS+S LCIVNDELFVR+ASP E Q
Sbjct: 509 GQSQGSVLAFTRTFIATPGSSSSLCIVNDELFVRDASPQETQ 550
Score = 31.6 bits (70), Expect(2) = e-155
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +3
Query: 1812 EQQEMLQAFSTQSGMK 1859
EQQEM+QAFS QSGMK
Sbjct: 571 EQQEMVQAFSAQSGMK 586
>ref|NP_071336.1| nuclear RNA export factor 2 [Homo sapiens].
Length = 626
Score = 536 bits (1382), Expect(2) = e-155
Identities = 267/462 (57%), Positives = 341/462 (73%)
Frame = +2
Query: 365 WHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNWFKITIPYGRKYDKSWLLGMIQSKC 544
WH I +T R+R PPER + +QDG ++NWFK+TIPYG KYDK+WL+ IQS C
Sbjct: 91 WHSEDEIRITT--WRNRKPPERKMSQNTQDGYTRNWFKVTIPYGIKYDKAWLMNSIQSHC 148
Query: 545 SVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDREXXXXXXXXXXXXXXHTVQNE 724
S FTP++FHY RA FFV+DAS ASALK V+YKI D E ++V+N+
Sbjct: 149 SDRFTPVDFHYVRNRACFFVQDASAASALKDVSYKIYDDENQKICIFVNHSTAPYSVKNK 208
Query: 725 LKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLVAQNIDVVLNRRSCMAAALRXXXXX 904
LKP Q+E LKL M+KRY+ SQQALDL+ LR DPDL+ ++ID++LNRR+CMAA L+
Sbjct: 209 LKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKIIERN 268
Query: 905 XXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 1084
KLY+LD LS+I +KAP +K LNLS N+L+S EL K+KGLKLEELWL+
Sbjct: 269 FPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLE 328
Query: 1085 GNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTMLPPCKGSYFGTETL 1264
GN LC TF DQS Y+SAIR+ FPKLLRLDG EL P+ D+++ + PCK ++ G+ETL
Sbjct: 329 GNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETL 388
Query: 1265 KNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPFIPQNPARSNLAEYFKDSRNVK 1444
K+LVL FLQQYY++YDSGDRQ LL AYHD AC SL+IPF P++ A S+L +YF+DSRN+K
Sbjct: 389 KHLVLQFLQQYYSIYDSGDRQGLLGAYHDEACFSLAIPFDPKDSAPSSLCKYFEDSRNMK 448
Query: 1445 KLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSFVVDISAQTSTLLCFSVNGVFKEVD 1624
LKDP L+ LL+ T+ ++V L+ LPKTQHD++S +VD+ QT +LCFSVNGVFKEV+
Sbjct: 449 TLKDPYLKGELLRRTKRDIVDSLSALPKTQHDLSSILVDVWCQTERMLCFSVNGVFKEVE 508
Query: 1625 GKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNASPDEIQ 1750
G+S+ S+ AFTRTF+A PGS+S LCIVNDELFVR+ASP E Q
Sbjct: 509 GQSQGSVLAFTRTFIATPGSSSSLCIVNDELFVRDASPQETQ 550
Score = 31.6 bits (70), Expect(2) = e-155
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +3
Query: 1812 EQQEMLQAFSTQSGMK 1859
EQQEM+QAFS QSGMK
Sbjct: 571 EQQEMVQAFSAQSGMK 586
>ref|NP_001074960.1| nuclear RNA export factor 1 isoform 2 [Homo sapiens].
Length = 356
Score = 486 bits (1252), Expect = e-137
Identities = 252/343 (73%), Positives = 266/343 (77%), Gaps = 1/343 (0%)
Frame = +2
Query: 113 MADEGKSYNEHDD-RVSFPQRRKKGRGPFRWKCXXXXXXXXXXXXXXXXXXLEEDDRDVA 289
MADEGKSY+EHDD RV+FPQR+KKGRGPFRWK LEEDD DVA
Sbjct: 1 MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVA 60
Query: 290 VSDAQDVXXXXXXXXXXXXXXXGDGWHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKN 469
+SDAQD GD WH+R RIHVTV RRDR PPERGGAGTSQDGTSKN
Sbjct: 61 MSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTV--RRDRAPPERGGAGTSQDGTSKN 118
Query: 470 WFKITIPYGRKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYK 649
WFKITIPYGRKYDK+WLL MIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYK
Sbjct: 119 WFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYK 178
Query: 650 ILDREXXXXXXXXXXXXXXHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDL 829
ILDRE HT+ NELKPEQVEQLKLIMSKRYDGSQQALDLKGLR+DPDL
Sbjct: 179 ILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDL 238
Query: 830 VAQNIDVVLNRRSCMAAALRXXXXXXXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNL 1009
VAQNIDVVLNRRSCMAA LR +LYRLDD+S+IVQKAPNLKILNL
Sbjct: 239 VAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL 298
Query: 1010 SGNELKSERELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAI 1138
SGNELKSERELDKIKGLKLEELWLDGN+LCDTFRDQSTYI ++
Sbjct: 299 SGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSV 341
>ref|NP_071335.1| nuclear RNA export factor 3 [Homo sapiens].
Length = 531
Score = 416 bits (1069), Expect = e-116
Identities = 225/454 (49%), Positives = 292/454 (64%)
Frame = +2
Query: 374 RSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNWFKITIPYGRKYDKSWLLGMIQSKCSVP 553
R + V + R++ PPER G DGT +WFKIT+P+G KY++ WLL +IQ++CSVP
Sbjct: 81 RKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQNECSVP 140
Query: 554 FTPIEFHYENTRAQFFVEDASTASALKAVNYKILDREXXXXXXXXXXXXXXHTVQNELKP 733
F P+EFHYEN A FFVE+AS A ALK V+ KI D + H V ELK
Sbjct: 141 FVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGIPHFVHRELKS 200
Query: 734 EQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLVAQNIDVVLNRRSCMAAALRXXXXXXXX 913
E+VEQ+KL M+++ D SQ+ALD++ L PD+V ++ + N R CMAA+L
Sbjct: 201 EKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAASLDVHEE---- 256
Query: 914 XXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNT 1093
N+ + +G E+DK KG++ E D +
Sbjct: 257 -------------------------NIPTVMSAG-------EMDKWKGIEPGEKCADRSP 284
Query: 1094 LCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTMLPPCKGSYFGTETLKNL 1273
+C TF D S+ I++I E FPKLL LDG + P EA LP CKGS+FG+E LKNL
Sbjct: 285 VCTTFSDTSSNINSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGSFFGSEMLKNL 344
Query: 1274 VLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPFIPQNPARSNLAEYFKDSRNVKKLK 1453
VL FLQQYY +YDSGDRQ LL AYHD AC SLSIPF P++ A S+ ++FKDSRN+K LK
Sbjct: 345 VLQFLQQYYLIYDSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIKILK 404
Query: 1454 DPSLRFRLLKHTRLNVVAFLNELPKTQHDINSFVVDISAQTSTLLCFSVNGVFKEVDGKS 1633
DP LR LLKHT+L++V L+ LPKTQHD++SF+VD+ QT +LCFSVNGVFKEV+G+S
Sbjct: 405 DPYLRGELLKHTKLDIVDSLSALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVFKEVEGQS 464
Query: 1634 RDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNAS 1735
+ S+ AFTRTF+A PGS+S LCIVND+LFVR+ S
Sbjct: 465 QGSVLAFTRTFIATPGSSSSLCIVNDKLFVRDTS 498
>ref|NP_116564.2| nuclear RNA export factor 5 [Homo sapiens].
Length = 365
Score = 363 bits (931), Expect = e-100
Identities = 200/402 (49%), Positives = 252/402 (62%), Gaps = 1/402 (0%)
Frame = +2
Query: 446 SQDGTSKNWFKITIPYGRKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTAS 625
+QD + WFK+TIPYG KYDK+WL+ IQS CSVPFTP++FHY RA FFV+ AS AS
Sbjct: 5 TQDENMRKWFKVTIPYGIKYDKAWLMNSIQSNCSVPFTPVDFHYIRNRACFFVQVASAAS 64
Query: 626 ALKAVNYKILDREXXXXXXXXXXXXXXHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLK 805
ALK V+YKI D E ++V+N+LKP Q+E LKL M+KRY+ SQQALDL+
Sbjct: 65 ALKDVSYKIYDDENQKICIFVSHFTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQ 124
Query: 806 GLRTDPDLVAQNIDVVLNRRSCMAAALRXXXXXXXXXXXXXXXXXKLYRLDDLSNIVQKA 985
LR DPDL+ ++ID++LNRR+CMAA L+ KLY+LD LS+I +KA
Sbjct: 125 NLRFDPDLMGRDIDIILNRRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDITEKA 184
Query: 986 PNLKILNLSGNELKSERELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAIRERFPKLLR 1165
P +K LNLS N+L+S EL K+KGLKLEELWL+GN LC TF DQS Y+SAIR+ FPKLLR
Sbjct: 185 PKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLR 244
Query: 1166 LDGHELPPPIAFDVEAPTMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAY 1345
LDG EL P+ D+++ + PCK ++ G+ETLK+LVL FLQQ
Sbjct: 245 LDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQ----------------- 287
Query: 1346 HDGACCSLSIPFIPQNPARSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRL-NVVAFLNEL 1522
SNL +YFKDSRN+K LKDP L+ +LLKHT+ V L+ L
Sbjct: 288 -------------------SNLCKYFKDSRNIKILKDPYLQRKLLKHTKCPRNVDSLSAL 328
Query: 1523 PKTQHDINSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLR 1648
P+TQHD S +VD+ QT VN F G SLR
Sbjct: 329 PETQHDFTSILVDMWYQT-------VNTCFLPRAGPESQSLR 363
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 73,939,645
Number of extensions: 2033180
Number of successful extensions: 7916
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7879
Number of HSP's successfully gapped: 10
Length of query: 635
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 526
Effective length of database: 14,704,088
Effective search space: 7734350288
Effective search space used: 7734350288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003388
(1905 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058093.2| nuclear RNA export factor 1 [Mus musculus]. 847 0.0
Alignment gi|NP_570958.1| nuclear RNA export factor 7 isoform 2 [Mus musc... 410 e-117
Alignment gi|NP_001019312.1| nuclear RNA export factor 3 [Mus musculus]. 325 1e-88
Alignment gi|NP_112549.1| nuclear RNA export factor 2 [Mus musculus]. 244 2e-64
>ref|NP_058093.2| nuclear RNA export factor 1 [Mus musculus].
Length = 618
Score = 847 bits (2188), Expect(2) = 0.0
Identities = 423/547 (77%), Positives = 452/547 (82%)
Frame = +2
Query: 113 MADEGKSYNEHDDRVSFPQRRKKGRGPFRWKCXXXXXXXXXXXXXXXXXXLEEDDRDVAV 292
MADEGKSYNEHDDRVSFPQRRKKGRGPFRWKC EEDD DVA+
Sbjct: 1 MADEGKSYNEHDDRVSFPQRRKKGRGPFRWKCGEGNRRSGRGGSGVQSSRFEEDDGDVAM 60
Query: 293 SDAQDVXXXXXXXXXXXXXXXGDGWHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNW 472
+D QD GDGWH+R RIH+TV RRDR P ERGGAGTSQDGT+KNW
Sbjct: 61 NDPQDGPRVRYNPYTNRPNRRGDGWHDRDRIHITV--RRDRAPAERGGAGTSQDGTTKNW 118
Query: 473 FKITIPYGRKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKI 652
FKITIPYGRKYDK+WLL MIQSKCSVPF PIEFHYENTRA FFVEDA+TASALK VN+KI
Sbjct: 119 FKITIPYGRKYDKTWLLSMIQSKCSVPFNPIEFHYENTRAHFFVEDATTASALKGVNHKI 178
Query: 653 LDREXXXXXXXXXXXXXXHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLV 832
DRE +TVQNELKPEQ+EQLKLIMSKRYDG+QQALDLKGLR+DPDLV
Sbjct: 179 QDRENRRISIIINASAPPYTVQNELKPEQIEQLKLIMSKRYDGNQQALDLKGLRSDPDLV 238
Query: 833 AQNIDVVLNRRSCMAAALRXXXXXXXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLS 1012
AQNIDVVLNRRSCMAA LR +LY+LDD+S+IVQKAPNLK LNLS
Sbjct: 239 AQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSSNRLYKLDDMSSIVQKAPNLKTLNLS 298
Query: 1013 GNELKSERELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPP 1192
GNELK+ERELDKIKGLKLEELWLD N +CD F DQS+YISAIRERFPKLLRLDGHELPPP
Sbjct: 299 GNELKTERELDKIKGLKLEELWLDRNPMCDNFGDQSSYISAIRERFPKLLRLDGHELPPP 358
Query: 1193 IAFDVEAPTMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLS 1372
I+FDVEAPTMLPPCKGSYFGTE LK+LVL FLQQYY +YDSGDRQ LL AYHDGACCSLS
Sbjct: 359 ISFDVEAPTMLPPCKGSYFGTENLKSLVLRFLQQYYVIYDSGDRQGLLYAYHDGACCSLS 418
Query: 1373 IPFIPQNPARSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSF 1552
IP+ PQNP R NLAEY KDSRNVKKLK+P+ RFRLLKHTRLNVVAFLNELPKTQHD+N+F
Sbjct: 419 IPYNPQNPVRKNLAEYVKDSRNVKKLKEPTQRFRLLKHTRLNVVAFLNELPKTQHDVNAF 478
Query: 1553 VVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNA 1732
VVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTF+AVP SNSGLCIVNDELFVRNA
Sbjct: 479 VVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNA 538
Query: 1733 SPDEIQR 1753
SP+EIQR
Sbjct: 539 SPEEIQR 545
Score = 32.7 bits (73), Expect(2) = 0.0
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 1812 EQQEMLQAFSTQSGM 1856
EQQEMLQAFSTQSGM
Sbjct: 565 EQQEMLQAFSTQSGM 579
>ref|NP_570958.1| nuclear RNA export factor 7 isoform 2 [Mus musculus].
Length = 620
Score = 410 bits (1054), Expect(2) = e-117
Identities = 218/460 (47%), Positives = 299/460 (65%)
Frame = +2
Query: 368 HERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNWFKITIPYGRKYDKSWLLGMIQSKCS 547
H +IHVT +RD P +R ++DG +WFK+T+P GRKYDK+ L+ I S CS
Sbjct: 90 HMEDQIHVTA--QRDDKPEQREAGQFTEDGELGSWFKVTVPCGRKYDKTQLMNSIHSLCS 147
Query: 548 VPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDREXXXXXXXXXXXXXXHTVQNEL 727
VPFTP++FH + R QFFV D ASALK ++YKI + ++VQN
Sbjct: 148 VPFTPVDFHCDKHRIQFFVPDFRIASALKDISYKIHNEYFQKIPIFVNPSVAPYSVQNRF 207
Query: 728 KPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLVAQNIDVVLNRRSCMAAALRXXXXXX 907
E++EQLKL M KRYD SQ AL LK LR DPDL+ NI ++LN RSCMAA L+
Sbjct: 208 TKEEMEQLKLAMRKRYDVSQHALCLKKLRFDPDLMKNNIHMILNHRSCMAATLQIIQENF 267
Query: 908 XXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDG 1087
KL++LD L ++V+KAP LKILNLS N L++ EL+K+KGLKLE+LWL+G
Sbjct: 268 PKLLSLNLSSNKLFQLDSLIDVVKKAPQLKILNLSKNMLRTVWELEKMKGLKLEQLWLEG 327
Query: 1088 NTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTMLPPCKGSYFGTETLK 1267
N LC TF D+S+YI A+ E FP+L LDG +L P + + ++ PCK + G+E +K
Sbjct: 328 NPLCSTFPDRSSYIRAVLECFPELSYLDGRKLLLPTVMNTQERKLMKPCKDIFMGSEVIK 387
Query: 1268 NLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPFIPQNPARSNLAEYFKDSRNVKK 1447
N V FL++YY +YDS +RQ LL+ YHD AC SL+IPF P +P +++ YFKD ++K
Sbjct: 388 NQVHRFLREYYLMYDSEERQGLLNIYHDQACFSLTIPFNPNDPDLNSMYVYFKDENDMKN 447
Query: 1448 LKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSFVVDISAQTSTLLCFSVNGVFKEVDG 1627
K+ ++ +LLK+T+ ++V L P+T H +SF V+I Q T+LCFSV G+FKE +G
Sbjct: 448 FKEFHIQRQLLKYTKQDIVECLRGFPQTLHAFSSFQVNICFQMETMLCFSVCGLFKE-EG 506
Query: 1628 KSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNASPDEI 1747
++ +RAF R F+A+ GS S + IVND+LFVRN S +EI
Sbjct: 507 TPKECVRAFMRIFIALLGS-SNMYIVNDQLFVRNPSSEEI 545
Score = 31.6 bits (70), Expect(2) = e-117
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +3
Query: 1812 EQQEMLQAFSTQSGMK 1859
EQQ M+QAFSTQSGMK
Sbjct: 567 EQQRMVQAFSTQSGMK 582
>ref|NP_001019312.1| nuclear RNA export factor 3 [Mus musculus].
Length = 553
Score = 325 bits (832), Expect = 1e-88
Identities = 183/437 (41%), Positives = 256/437 (58%)
Frame = +2
Query: 419 PPERGGAGTSQDGTSKNWFKITIPYGRKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQF 598
PPER QD TS+NWFK+TIP+G KYDK WLL +IQS+CS+PFTP++FHYE +A F
Sbjct: 85 PPERKMQRDKQDDTSENWFKVTIPFGIKYDKKWLLNLIQSQCSIPFTPVQFHYEKMQAHF 144
Query: 599 FVEDASTASALKAVNYKILDREXXXXXXXXXXXXXXHTVQNELKPEQVEQLKLIMSKRYD 778
FV++ + A LKA++ KILD + Q+ P + L+L +++
Sbjct: 145 FVDNPNIAFMLKAISDKILDETD-------------NKPQSHRTPSVI--LQLTTNQQCA 189
Query: 779 GSQQALDLKGLRTDPDLVAQNIDVVLNRRSCMAAALRXXXXXXXXXXXXXXXXXKLYRLD 958
SQ+ L+ + L D DL+ + D+ L R M
Sbjct: 190 TSQRVLNRQRLPFDQDLMTRPTDLALVPRRYMT--------------------------- 222
Query: 959 DLSNIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAI 1138
P+L I ++ SE E+ K+ LE++ D ++L T D+S+ I++I
Sbjct: 223 ---------PSLSIHKEDMTQVNSEGEVAKVHAPDLEKICADQSSLSTTMPDKSSNINSI 273
Query: 1139 RERFPKLLRLDGHELPPPIAFDVEAPTMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSG 1318
E FPKLL LDG E P E L CK +FG+E++K +VL FL+QYY +YD+G
Sbjct: 274 LELFPKLLSLDGQESHKPTLCGPEDHKTLSACKEIFFGSESIKTMVLQFLKQYYFIYDNG 333
Query: 1319 DRQRLLDAYHDGACCSLSIPFIPQNPARSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLN 1498
DRQ LL+AYH AC +L+IPF + + ++L EYFK SRN+K LKDP +R +LLKH + +
Sbjct: 334 DRQGLLNAYHPEACFTLTIPFSSIDLSMNSLCEYFKFSRNMKILKDPYMRRQLLKHKKCD 393
Query: 1499 VVAFLNELPKTQHDINSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVP 1678
++ FL LPKTQHD+ SFVVDI QT +LCFSV+G+FKEVD ++ + AFTR FV
Sbjct: 394 IIHFLRTLPKTQHDLTSFVVDICLQTEKMLCFSVSGLFKEVDNSAQGCMHAFTRIFVVTH 453
Query: 1679 GSNSGLCIVNDELFVRN 1729
++S LCI+ND+L V N
Sbjct: 454 DNSSELCIINDKLSVTN 470
>ref|NP_112549.1| nuclear RNA export factor 2 [Mus musculus].
Length = 685
Score = 244 bits (623), Expect = 2e-64
Identities = 121/249 (48%), Positives = 168/249 (67%)
Frame = +2
Query: 446 SQDGTSKNWFKITIPYGRKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTAS 625
+++ T + W+K+TIP GRKY+K+WL+ IQ+ CS PF P++FHY+ T+A+FFV++A TAS
Sbjct: 117 AENETEEKWYKVTIPSGRKYEKTWLMRSIQNFCSEPFIPVDFHYDKTQARFFVQNAKTAS 176
Query: 626 ALKAVNYKILDREXXXXXXXXXXXXXXHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLK 805
ALK V+Y+I D ++VQN+ EQ+E ++ M RYD SQ+ALDL+
Sbjct: 177 ALKDVSYRICDETSRKIAIFVSPSVVPYSVQNKFTSEQMEYIRESMMNRYDASQKALDLE 236
Query: 806 GLRTDPDLVAQNIDVVLNRRSCMAAALRXXXXXXXXXXXXXXXXXKLYRLDDLSNIVQKA 985
R D DL+ ++ID++LNRRSCM A L+ KLY+LD LS++ +KA
Sbjct: 237 KFRFDQDLMDKDIDMMLNRRSCMVATLQIIQSDIPELLSLNLTNNKLYQLDGLSDMTEKA 296
Query: 986 PNLKILNLSGNELKSERELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAIRERFPKLLR 1165
P++KILNLS N+LKS EL+K+K LKLEELWL+GN C+ F D YIS I + FPKLLR
Sbjct: 297 PHVKILNLSRNKLKSFTELEKVKELKLEELWLEGNPFCNCFLDHFEYISTIHDLFPKLLR 356
Query: 1166 LDGHELPPP 1192
LDG ++ P
Sbjct: 357 LDGEDIIVP 365
Score = 223 bits (568), Expect(2) = 3e-60
Identities = 111/195 (56%), Positives = 144/195 (73%)
Frame = +2
Query: 1169 DGHELPPPIAFDVEAPTMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYH 1348
DG +L P D+E P PCK S +E +KNLVL FL++YY YD+GDR RLLDAYH
Sbjct: 423 DGKDLIVPTKMDIEVPQ---PCKESCNTSEVIKNLVLQFLKEYYLFYDNGDRLRLLDAYH 479
Query: 1349 DGACCSLSIPFIPQNPARSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPK 1528
D AC SLS+PF +P +NL EYFK SR++K+ +D S+R +LLKHT+ ++V L+ LPK
Sbjct: 480 DQACFSLSVPFDVSDPNLNNLEEYFKYSRDLKRQQDSSMRMQLLKHTKHDIVNSLSLLPK 539
Query: 1529 TQHDINSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPGSNSGLCIVN 1708
TQHD+ SF+VD+ T +LCFSVNG+F EV+GK R +RAFTR F+A+P S+S +CI+N
Sbjct: 540 TQHDLCSFLVDLFLHTEMMLCFSVNGLFMEVEGKCRGCIRAFTRIFIAIPCSDSRICIMN 599
Query: 1709 DELFVRNASPDEIQR 1753
DEL VRNASP EIQ+
Sbjct: 600 DELIVRNASPKEIQK 614
Score = 28.9 bits (63), Expect(2) = 3e-60
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +3
Query: 1812 EQQEMLQAFSTQSGMK 1859
EQQEM+++FS QSGMK
Sbjct: 633 EQQEMVKSFSVQSGMK 648
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 62,574,363
Number of extensions: 1701126
Number of successful extensions: 6483
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6458
Number of HSP's successfully gapped: 9
Length of query: 635
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 527
Effective length of database: 12,373,671
Effective search space: 6520924617
Effective search space used: 6520924617
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003388
(1905 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230279.1| nuclear RNA export factor 1 [Sus scrofa]. 954 0.0
Alignment gi|XP_003135325.1| PREDICTED: nuclear RNA export factor 2-like ... 530 e-153
Alignment gi|XP_003360443.1| PREDICTED: nuclear RNA export factor 2-like ... 530 e-153
Alignment gi|XP_001924763.2| PREDICTED: nuclear RNA export factor 2 [Sus ... 515 e-147
>ref|NP_001230279.1| nuclear RNA export factor 1 [Sus scrofa].
Length = 620
Score = 954 bits (2467), Expect(2) = 0.0
Identities = 483/547 (88%), Positives = 483/547 (88%)
Frame = +2
Query: 113 MADEGKSYNEHDDRVSFPQRRKKGRGPFRWKCXXXXXXXXXXXXXXXXXXLEEDDRDVAV 292
MADEGKSYNEHDDRVSFPQRRKKGRGPFRWKC LEEDDRDVAV
Sbjct: 1 MADEGKSYNEHDDRVSFPQRRKKGRGPFRWKCGEGNRRSARGGSSIRSSRLEEDDRDVAV 60
Query: 293 SDAQDVXXXXXXXXXXXXXXXGDGWHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNW 472
SDAQDV GDGWHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNW
Sbjct: 61 SDAQDVPRLRYNPYAPRPNRRGDGWHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNW 120
Query: 473 FKITIPYGRKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKI 652
FKITIPYGRKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKI
Sbjct: 121 FKITIPYGRKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKI 180
Query: 653 LDREXXXXXXXXXXXXXXHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLV 832
LDRE HTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLV
Sbjct: 181 LDRENRRISIIINSSPPPHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLV 240
Query: 833 AQNIDVVLNRRSCMAAALRXXXXXXXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLS 1012
AQNIDVVLNRRSCMAAALR KLYRLDDLSNIVQKAPNLKILNLS
Sbjct: 241 AQNIDVVLNRRSCMAAALRIIEENIPELLSLNLSNNKLYRLDDLSNIVQKAPNLKILNLS 300
Query: 1013 GNELKSERELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPP 1192
GNELKSERELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPP
Sbjct: 301 GNELKSERELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPP 360
Query: 1193 IAFDVEAPTMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLS 1372
IAFDVEAPTMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLS
Sbjct: 361 IAFDVEAPTMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLS 420
Query: 1373 IPFIPQNPARSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSF 1552
IPFIPQNPARSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSF
Sbjct: 421 IPFIPQNPARSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSF 480
Query: 1553 VVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNA 1732
VVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNA
Sbjct: 481 VVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNA 540
Query: 1733 SPDEIQR 1753
SPDEIQR
Sbjct: 541 SPDEIQR 547
Score = 32.7 bits (73), Expect(2) = 0.0
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 1812 EQQEMLQAFSTQSGM 1856
EQQEMLQAFSTQSGM
Sbjct: 567 EQQEMLQAFSTQSGM 581
>ref|XP_003135325.1| PREDICTED: nuclear RNA export factor 2-like [Sus scrofa].
Length = 707
Score = 530 bits (1366), Expect(2) = e-153
Identities = 280/538 (52%), Positives = 358/538 (66%), Gaps = 1/538 (0%)
Frame = +2
Query: 140 EHDDRVSFPQRRKKGRGPFRWKCXXXXXXXXXXXXXXXXXXLEEDDRDVAVSDAQDVXXX 319
++DD S Q R +G L+E+D +V + D Q+
Sbjct: 95 DYDDAGSSSQERSEGWSSSPHSLSKRSPRYEHGGYEPQPSGLQEEDGNVMMMDVQEDPKG 154
Query: 320 XXXXXXXXXXXXGDGWHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNWFKITIPYGR 499
WH IH+TV RDR ER +QD T +WFK+TIP+GR
Sbjct: 155 RDSPYTARGDKRRVRWHSEGHIHITV--WRDRKLLEREKGKNTQDRTLSSWFKVTIPHGR 212
Query: 500 KYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDREXXXXX 679
KYDK+WL+ IQS+CSVPFTP++FH +A+FFV+DASTASALK V+Y+I D++
Sbjct: 213 KYDKTWLMDSIQSRCSVPFTPVDFHCVKNQARFFVQDASTASALKDVSYEICDKDNRKIP 272
Query: 680 XXXXXXXXX-HTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLVAQNIDVVL 856
++V ++LKP ++EQLKL + KRY+ SQQALDL+ LR DPDL +ID++L
Sbjct: 273 IIVNPSDVVPYSVHDKLKPGEMEQLKLTLHKRYNISQQALDLQRLRYDPDLTGHDIDIIL 332
Query: 857 NRRSCMAAALRXXXXXXXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLSGNELKSER 1036
NRR+CM+A L+ KLYRLD LS+I+Q P +KILNLS NELKS
Sbjct: 333 NRRNCMSATLQVIKKNFPELLSLNLSSNKLYRLDGLSDIIQMVPMVKILNLSKNELKSAW 392
Query: 1037 ELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAP 1216
EL K+KGLKLEELWL GN LC TF DQSTY+SAIRE FPKLLRLDG EL P D +AP
Sbjct: 393 ELSKMKGLKLEELWLQGNPLCSTFPDQSTYVSAIRECFPKLLRLDGQELLSPSIVDNDAP 452
Query: 1217 TMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPFIPQNP 1396
+L PCK SY G+ LK+L+L FL+QYY ++D GDR+RLL AYH+ AC SL+IPF P++P
Sbjct: 453 YVLKPCKESYKGSNELKSLILQFLRQYYLIHDYGDRRRLLGAYHNEACFSLTIPFHPEDP 512
Query: 1397 ARSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSFVVDISAQT 1576
S+L EY +++RN+KKLKDP LR +LLKHT+ ++V L LPKTQHD++SFVVD+ QT
Sbjct: 513 DPSSLYEYLEENRNMKKLKDPHLRVQLLKHTKGDIVTSLCVLPKTQHDLSSFVVDMWFQT 572
Query: 1577 STLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNASPDEIQ 1750
T+LCFS+NGVFKEV+G+SR +RAFTRTF+ P ++S LCIVNDELFVR ASP E Q
Sbjct: 573 ETMLCFSINGVFKEVEGQSRGCVRAFTRTFITTPATSSSLCIVNDELFVREASPSETQ 630
Score = 30.8 bits (68), Expect(2) = e-153
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +3
Query: 1812 EQQEMLQAFSTQSGMK 1859
E QEM+QAFSTQSGMK
Sbjct: 652 ELQEMVQAFSTQSGMK 667
>ref|XP_003360443.1| PREDICTED: nuclear RNA export factor 2-like [Sus scrofa].
Length = 707
Score = 530 bits (1366), Expect(2) = e-153
Identities = 280/538 (52%), Positives = 358/538 (66%), Gaps = 1/538 (0%)
Frame = +2
Query: 140 EHDDRVSFPQRRKKGRGPFRWKCXXXXXXXXXXXXXXXXXXLEEDDRDVAVSDAQDVXXX 319
++DD S Q R +G L+E+D +V + D Q+
Sbjct: 95 DYDDAGSSSQERSEGWSSSPHSLSKRSPRYEHGGYEPQPSGLQEEDGNVMMMDVQEDPKG 154
Query: 320 XXXXXXXXXXXXGDGWHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNWFKITIPYGR 499
WH IH+TV RDR ER +QD T +WFK+TIP+GR
Sbjct: 155 RDSPYTARGDKRRVRWHSEGHIHITV--WRDRKLLEREKGKNTQDRTLSSWFKVTIPHGR 212
Query: 500 KYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDREXXXXX 679
KYDK+WL+ IQS+CSVPFTP++FH +A+FFV+DASTASALK V+Y+I D++
Sbjct: 213 KYDKTWLMDSIQSRCSVPFTPVDFHCVKNQARFFVQDASTASALKDVSYEICDKDNRKIP 272
Query: 680 XXXXXXXXX-HTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLVAQNIDVVL 856
++V ++LKP ++EQLKL + KRY+ SQQALDL+ LR DPDL +ID++L
Sbjct: 273 IIVNPSDVVPYSVHDKLKPGEMEQLKLTLHKRYNISQQALDLQRLRYDPDLTGHDIDIIL 332
Query: 857 NRRSCMAAALRXXXXXXXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLSGNELKSER 1036
NRR+CM+A L+ KLYRLD LS+I+Q P +KILNLS NELKS
Sbjct: 333 NRRNCMSATLQVIKKNFPELLSLNLSSNKLYRLDGLSDIIQMVPMVKILNLSKNELKSAW 392
Query: 1037 ELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAP 1216
EL K+KGLKLEELWL GN LC TF DQSTY+SAIRE FPKLLRLDG EL P D +AP
Sbjct: 393 ELSKMKGLKLEELWLQGNPLCSTFPDQSTYVSAIRECFPKLLRLDGQELLSPSIVDNDAP 452
Query: 1217 TMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPFIPQNP 1396
+L PCK SY G+ LK+L+L FL+QYY ++D GDR+RLL AYH+ AC SL+IPF P++P
Sbjct: 453 YVLKPCKESYKGSNELKSLILQFLRQYYLIHDYGDRRRLLGAYHNEACFSLTIPFHPEDP 512
Query: 1397 ARSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSFVVDISAQT 1576
S+L EY +++RN+KKLKDP LR +LLKHT+ ++V L LPKTQHD++SFVVD+ QT
Sbjct: 513 DPSSLYEYLEENRNMKKLKDPHLRVQLLKHTKGDIVTSLCVLPKTQHDLSSFVVDMWFQT 572
Query: 1577 STLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNASPDEIQ 1750
T+LCFS+NGVFKEV+G+SR +RAFTRTF+ P ++S LCIVNDELFVR ASP E Q
Sbjct: 573 ETMLCFSINGVFKEVEGQSRGCVRAFTRTFITTPATSSSLCIVNDELFVREASPSETQ 630
Score = 30.8 bits (68), Expect(2) = e-153
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +3
Query: 1812 EQQEMLQAFSTQSGMK 1859
E QEM+QAFSTQSGMK
Sbjct: 652 ELQEMVQAFSTQSGMK 667
>ref|XP_001924763.2| PREDICTED: nuclear RNA export factor 2 [Sus scrofa].
Length = 635
Score = 515 bits (1326), Expect(2) = e-147
Identities = 281/545 (51%), Positives = 353/545 (64%), Gaps = 3/545 (0%)
Frame = +2
Query: 125 GKSYN-EHDDRVSFPQRRKKGRGPFRWKCXXXXXXXXXXXXXXXXXXLEEDDRDVAVSDA 301
G S N ++DD S Q R +G L+E+D +V + D
Sbjct: 17 GTSRNKDYDDAGSSSQERSEGWSSSPHSLSKRSPRYEHGGYEPQPSGLQEEDGNVMMMDV 76
Query: 302 Q-DVXXXXXXXXXXXXXXXGDGWHERSRIHVTVPLRRDRVPPERGGAGTSQDGTSKNWFK 478
Q D WH IH+TV + P E+ +QD T +WFK
Sbjct: 77 QEDPKGRDSPCTAAQQDNRRVKWHSEGHIHITV--WTNGKPMEKETGENTQDRTQSSWFK 134
Query: 479 ITIPYGRKYDKSWLLGMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILD 658
+TIPYG KYDK+WL+ IQS CSVPF P++FHY + A+FFV+DASTASAL VNYKI D
Sbjct: 135 VTIPYGIKYDKTWLMDSIQSHCSVPFIPVDFHYVKSGARFFVQDASTASALMDVNYKICD 194
Query: 659 REXXXXXXXXXXXXXX-HTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLVA 835
E ++V+N+L+PE++EQLKL + KRYD SQ+ALDL+ LR DP LV
Sbjct: 195 EEDQKIPIIVNPSDVVPYSVRNKLEPEEMEQLKLTLYKRYDVSQKALDLQRLRFDPGLVG 254
Query: 836 QNIDVVLNRRSCMAAALRXXXXXXXXXXXXXXXXXKLYRLDDLSNIVQKAPNLKILNLSG 1015
+ID++LNRR+CM+A L+ KLYRLD LS+I+Q P +KILNLS
Sbjct: 255 HDIDIILNRRNCMSATLQIIEKNFPELLSLNLSSNKLYRLDGLSDIIQMVPTVKILNLSK 314
Query: 1016 NELKSERELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPI 1195
NELKS EL K+KGLKLEELWL GN LC TF +QSTYISAIRE FPKLLRLDG LP P
Sbjct: 315 NELKSAWELSKMKGLKLEELWLQGNPLCGTFPNQSTYISAIRECFPKLLRLDGRVLPSPR 374
Query: 1196 AFDVEAPTMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSI 1375
+++ P +L PCK SY G++ LK+L+L FLQQYY +YDSGDR LL AYH AC SL+I
Sbjct: 375 IVNIDTPYVLKPCKESYKGSDALKSLILQFLQQYYLIYDSGDRYGLLGAYHQRACFSLTI 434
Query: 1376 PFIPQNPARSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSFV 1555
PF P++PA S+L EY + +RN+KKLKDP LR +LLKHT+ ++V L LPKTQHD +SF+
Sbjct: 435 PFNPKDPAPSSLYEYLEANRNMKKLKDPHLRVQLLKHTKHDIVHSLCVLPKTQHDFSSFM 494
Query: 1556 VDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPGSNSGLCIVNDELFVRNAS 1735
VD+ +T T+LCFSV GVFKEV G S+ +RAFTRTF+A P ++S L IVNDELFVR AS
Sbjct: 495 VDMWLKTETMLCFSVTGVFKEVGGWSQGCVRAFTRTFIATPATSSSLFIVNDELFVREAS 554
Query: 1736 PDEIQ 1750
P + Q
Sbjct: 555 PKKTQ 559
Score = 25.8 bits (55), Expect(2) = e-147
Identities = 10/15 (66%), Positives = 15/15 (100%)
Frame = +3
Query: 1812 EQQEMLQAFSTQSGM 1856
EQQ++++AFS+QSGM
Sbjct: 580 EQQQIVKAFSSQSGM 594
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 46,483,909
Number of extensions: 1290947
Number of successful extensions: 5250
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5228
Number of HSP's successfully gapped: 8
Length of query: 635
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 530
Effective length of database: 8,729,747
Effective search space: 4626765910
Effective search space used: 4626765910
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003388
(1905 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 367 2e-98
Sscrofa_ChrX 64 3e-07
>Sscrofa_Chr02
|| Length = 162569375
Score = 367 bits (185), Expect = 2e-98
Identities = 185/185 (100%)
Strand = Plus / Plus
Query: 140 gagcacgatgatcgagttagtttccctcaaagaaggaagaaaggccgaggccctttccgg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8318358 gagcacgatgatcgagttagtttccctcaaagaaggaagaaaggccgaggccctttccgg 8318417
Query: 200 tggaagtgtggcgaggggaaccggcgctctgcaaggggaggttctagcattcggtcttcc 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8318418 tggaagtgtggcgaggggaaccggcgctctgcaaggggaggttctagcattcggtcttcc 8318477
Query: 260 cgccttgaggaagatgacagagatgtggcagtgagcgacgcccaggatgttccccgacta 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8318478 cgccttgaggaagatgacagagatgtggcagtgagcgacgcccaggatgttccccgacta 8318537
Query: 320 cgata 324
|||||
Sbjct: 8318538 cgata 8318542
Score = 321 bits (162), Expect = 8e-85
Identities = 182/186 (97%), Gaps = 2/186 (1%)
Strand = Plus / Plus
Query: 1692 ggctgtgcatcgtaaacgacgagctgtttgtgcggaatgccagtcccgatgagatccaaa 1751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8325649 ggctgtgcatcgtaaacgacgagctgtttgtgcggaatgccagtcccgatgagatccaaa 8325708
Query: 1752 gggcctttgccatgccggcgcccacgccttcctccagccccagtgcccaccctctcccca 1811
| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 8325709 gagccttcgccatgccggcgcccacgccttcctccag-cccagtgcccaccctctcccca 8325767
Query: 1812 gaacagcaggaaatgctgcaagcattctctacccagtctggcatgaaaccttgagtggtc 1871
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 8325768 gaacagcaggaaatgctgcaagcattctctacccagtctggcatg-aaccttgagtggtc 8325826
Query: 1872 ccagaa 1877
||||||
Sbjct: 8325827 ccagaa 8325832
Score = 317 bits (160), Expect = 1e-83
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 325 caacccctatgctccgcgacccaaccgtcggggcgatggttggcacgagcggtctcgaat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8318767 caacccctatgctccgcgacccaaccgtcggggcgatggttggcacgagcggtctcgaat 8318826
Query: 385 tcacgtcacggtgcctctgcggagagacagagttcctccagagaggggaggagccggcac 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8318827 tcacgtcacggtgcctctgcggagagacagagttcctccagagaggggaggagccggcac 8318886
Query: 445 cagccaggatgggacctcaaagaactggtttaagattaca 484
||||||||||||||||||||||||||||||||||||||||
Sbjct: 8318887 cagccaggatgggacctcaaagaactggtttaagattaca 8318926
Score = 278 bits (140), Expect = 1e-71
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 1 gcataaatgcggcggcatccggcgtaggagcacttcagccgggagagcctgggcgttcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8315194 gcataaatgcggcggcatccggcgtaggagcacttcagccgggagagcctgggcgttcgg 8315253
Query: 61 acgtttgccggtgtcgcgggccgcgacagagcccgcccctgctcgctgcgccatggcgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8315254 acgtttgccggtgtcgcgggccgcgacagagcccgcccctgctcgctgcgccatggcgga 8315313
Query: 121 cgaagggaagtcatacaacg 140
||||||||||||||||||||
Sbjct: 8315314 cgaagggaagtcatacaacg 8315333
Score = 230 bits (116), Expect = 2e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 1461 gcctgcggttcaggctgctgaagcacacgcgtctcaacgtggtggcctttctcaacgagc 1520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8324205 gcctgcggttcaggctgctgaagcacacgcgtctcaacgtggtggcctttctcaacgagc 8324264
Query: 1521 tgcccaaaactcagcatgatatcaattccttcgtggtagacataagcgcccagaca 1576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8324265 tgcccaaaactcagcatgatatcaattccttcgtggtagacataagcgcccagaca 8324320
Score = 222 bits (112), Expect = 5e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1020 agctgaagtctgagcgggagctggacaagatcaaagggctgaagctagaagagctgtggc 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8320970 agctgaagtctgagcgggagctggacaagatcaaagggctgaagctagaagagctgtggc 8321029
Query: 1080 tcgatggaaacaccctgtgtgataccttccgagaccagtccacctacatcag 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8321030 tcgatggaaacaccctgtgtgataccttccgagaccagtccacctacatcag 8321081
Score = 218 bits (110), Expect = 9e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 912 agctgttgtccttgaacttgagcaataacaagctctacagactggatgacttgtccaaca 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8320691 agctgttgtccttgaacttgagcaataacaagctctacagactggatgacttgtccaaca 8320750
Query: 972 tcgtgcagaaagcaccgaatctaaagatcctaaatctctctggaaacgag 1021
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8320751 tcgtgcagaaagcaccgaatctaaagatcctaaatctctctggaaacgag 8320800
Score = 214 bits (108), Expect = 1e-52
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1294 gtactatgcagtatatgactctggagaccggcagcggctcctggatgcctaccatgatgg 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8323820 gtactatgcagtatatgactctggagaccggcagcggctcctggatgcctaccatgatgg 8323879
Query: 1354 ggcctgctgctccctgagcatccccttcatcccccagaaccctgctcg 1401
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8323880 ggcctgctgctccctgagcatccccttcatcccccagaaccctgctcg 8323927
Score = 212 bits (107), Expect = 5e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 567 agtttcactatgaaaacacacgggcccagttttttgtcgaggacgccagtaccgcctcgg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8319834 agtttcactatgaaaacacacgggcccagttttttgtcgaggacgccagtaccgcctcgg 8319893
Query: 627 cattgaaggctgtcaactataagattttggatcgggagaaccgcagg 673
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8319894 cattgaaggctgtcaactataagattttggatcgggagaaccgcagg 8319940
Score = 180 bits (91), Expect = 2e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 823 agacttggtggcccagaacatcgacgtggtcctgaaccgcagaagctgcatggcagccgc 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8320473 agacttggtggcccagaacatcgacgtggtcctgaaccgcagaagctgcatggcagccgc 8320532
Query: 883 cctgcgcatcatcgaagagaacatccctgag 913
|||||||||||||||||||||||||||||||
Sbjct: 8320533 cctgcgcatcatcgaagagaacatccctgag 8320563
Score = 167 bits (84), Expect = 3e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 485 attccttatggcaggaaatacgacaagtcatggctcctgggcatgattcagagcaagtgc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8319644 attccttatggcaggaaatacgacaagtcatggctcctgggcatgattcagagcaagtgc 8319703
Query: 545 agtgtccctttcactcccattgag 568
||||||||||||||||||||||||
Sbjct: 8319704 agtgtccctttcactcccattgag 8319727
Score = 163 bits (82), Expect = 4e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 673 gatatctatcatcatcaactcctctccgccgccccacactgtgcagaacgagctgaagcc 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8320063 gatatctatcatcatcaactcctctccgccgccccacactgtgcagaacgagctgaagcc 8320122
Query: 733 ggagcaagtcgagcagctcaag 754
||||||||||||||||||||||
Sbjct: 8320123 ggagcaagtcgagcagctcaag 8320144
Score = 151 bits (76), Expect = 2e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1618 agtggatggaaaatctcgggactctttgcgagcctttacccggacgttcgtggctgttcc 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8325078 agtggatggaaaatctcgggactctttgcgagcctttacccggacgttcgtggctgttcc 8325137
Query: 1678 tggcagcaattcaggg 1693
||||||||||||||||
Sbjct: 8325138 tggcagcaattcaggg 8325153
Score = 143 bits (72), Expect = 4e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 753 agctgatcatgagcaaacgatacgacggctcccagcaagcccttgacctcaagggcctcc 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8320279 agctgatcatgagcaaacgatacgacggctcccagcaagcccttgacctcaagggcctcc 8320338
Query: 813 gtacagacccag 824
||||||||||||
Sbjct: 8320339 gtacagacccag 8320350
Score = 141 bits (71), Expect = 2e-30
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1168 ggatggccacgagttacccccaccaattgcctttgatgttgaagcccccacgatgttacc 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8323514 ggatggccacgagttacccccaccaattgcctttgatgttgaagcccccacgatgttacc 8323573
Query: 1228 accctgcaagg 1238
|||||||||||
Sbjct: 8323574 accctgcaagg 8323584
Score = 121 bits (61), Expect = 1e-24
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 1236 agggaagctattttggaacagagaccctgaagaatctggtgctgcacttcctgcagcagt 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8323669 agggaagctattttggaacagagaccctgaagaatctggtgctgcacttcctgcagcagt 8323728
Query: 1296 a 1296
|
Sbjct: 8323729 a 8323729
Score = 121 bits (61), Expect = 1e-24
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 1401 gaagcaacttggccgagtacttcaaggatagcaggaatgtgaagaagcttaaagacccta 1460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8324044 gaagcaacttggccgagtacttcaaggatagcaggaatgtgaagaagcttaaagacccta 8324103
Query: 1461 g 1461
|
Sbjct: 8324104 g 8324104
Score = 85.7 bits (43), Expect = 8e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 1577 agcacattgctgtgtttttctgtcaatggagtcttcaaggaag 1619
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8324444 agcacattgctgtgtttttctgtcaatggagtcttcaaggaag 8324486
Score = 81.8 bits (41), Expect = 1e-12
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 1129 cagcgccattcgagaacgattccccaaattactacgcctgg 1169
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 8322878 cagcgccattcgagaacgattccccaaattactacgcctgg 8322918
>Sscrofa_ChrX
|| Length = 144288218
Score = 63.9 bits (32), Expect = 3e-07
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 1045 caagatcaaagggctgaagctagaagagctgtggctcgatggaaacaccctgtgtgatac 1104
|||||| |||||||||||||| || ||||||||||| | || ||| | ||||||| ||
Sbjct: 97208623 caagatgaaagggctgaagcttgaggagctgtggctacaagggaaccctctgtgtggcac 97208564
Query: 1105 cttccgagaccagtccacctacat 1128
||||| | ||||||||||||||||
Sbjct: 97208563 cttcccaaaccagtccacctacat 97208540
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 46,474,334
Number of extensions: 283
Number of successful extensions: 283
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 20
Length of query: 1905
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1883
Effective length of database: 2,808,408,574
Effective search space: 5288233344842
Effective search space used: 5288233344842
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)