Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003390
(1233 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076943.1| translation initiation factor eIF-2B subunit... 652 0.0
Alignment gi|NP_001039633.1| mannose-1-phosphate guanyltransferase beta [... 52 1e-06
>ref|NP_001076943.1| translation initiation factor eIF-2B subunit gamma [Bos taurus].
Length = 452
Score = 652 bits (1681), Expect = 0.0
Identities = 331/380 (87%), Positives = 348/380 (91%), Gaps = 1/380 (0%)
Frame = +2
Query: 95 MEFQAVVMAVGGGSRMTDLTSSVPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITTRDVQ 274
MEFQAVVMAVGGGSRMTDLTSS+PKPLLPVGNKPLIWYPLNLLERVGFEEVIVITT+DVQ
Sbjct: 1 MEFQAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITTKDVQ 60
Query: 275 KALCADF-KMKMKLDIVCIADDADIGTADSLRYIYQKLKTDVLVLSCDLITDVALHEVVD 451
KALCADF KMKMKLDIVCI D+AD+GTADSLR+IYQKLKTDVLVLSCDLITDVALHEVVD
Sbjct: 61 KALCADFNKMKMKLDIVCIPDEADMGTADSLRHIYQKLKTDVLVLSCDLITDVALHEVVD 120
Query: 452 LFRAHDATLAMLMRKGQDGLESVPGQKGKKKAVEQRDFVGVDSTGKRLLFMANEADLDEE 631
LFRAHDA+LAMLMRKGQ+ LE VPGQKGKKKAVEQRDFVGVDSTGKRLLFMANEADLDEE
Sbjct: 121 LFRAHDASLAMLMRKGQESLEPVPGQKGKKKAVEQRDFVGVDSTGKRLLFMANEADLDEE 180
Query: 632 LVIKGAILQKHPRIRFHTGLVDAHLYCLRRYVVDFLMEYKSITSIRSELIPYLVRKQFSS 811
L+IKG+ILQKHPRIRFHTGLVDAHLYCL++YVVDFLME KSITSIRSELIPYLVRKQFSS
Sbjct: 181 LIIKGSILQKHPRIRFHTGLVDAHLYCLKKYVVDFLMENKSITSIRSELIPYLVRKQFSS 240
Query: 812 ASSQQGQXXXXXXXXXXXXXTLDIYSFIKEVGPLTFALHDACWNACRGDSREDLSRSQVR 991
ASSQQGQ +LDIYSFIKE LT A +D CWN CRGDS E LSRSQVR
Sbjct: 241 ASSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLTLAPYDTCWNTCRGDSWEGLSRSQVR 300
Query: 992 CYVHIMKEGLCSRVGTLGLYMEANRQVSKLLTVICPEETLVHPSAQIVSKHLIGADSLIG 1171
CYVHIMKEGLCSRV TLGLYMEANRQVSKLL VICPEE+L+H SAQIVSKH++GADSLIG
Sbjct: 301 CYVHIMKEGLCSRVSTLGLYMEANRQVSKLLPVICPEESLIHSSAQIVSKHMVGADSLIG 360
Query: 1172 PDTQVGEKSSRKRSVIGSSC 1231
PDTQVGEKSS K SVIGSSC
Sbjct: 361 PDTQVGEKSSIKHSVIGSSC 380
>ref|NP_001039633.1| mannose-1-phosphate guanyltransferase beta [Bos taurus].
Length = 360
Score = 51.6 bits (122), Expect = 1e-06
Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Frame = +2
Query: 104 QAVVMAVGGGSRMTDLTSSVPKPLLPVGNKPLIWYPLNLLERVGFEEVIVIT---TRDVQ 274
+A+++ G G+R+ LT S+PKPL NKP++ + + L G + VI+ ++ ++
Sbjct: 2 KALILVGGYGTRLRPLTLSIPKPLADFCNKPILLHQVEALAAAGVDHVILAVSYMSQVLE 61
Query: 275 KALCADFKMKMKLDIVCIADDADIGTADSL---RYIYQKLKTDVLVLSCDLITDVALHEV 445
K + A + K+ + I ++ +GTA L R + + VL+ D+I D +
Sbjct: 62 KEMKAQ-EQKLGIRISMSHEEEPLGTAGPLALARDLLCETADPFFVLNSDVICDFPFEAM 120
Query: 446 VDLFRAHDATLAMLMRKGQD 505
V R H ++L+ K ++
Sbjct: 121 VQFHRHHGQEGSILVTKVEE 140
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,154,918
Number of extensions: 1117294
Number of successful extensions: 3104
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3099
Number of HSP's successfully gapped: 2
Length of query: 411
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 306
Effective length of database: 14,207,134
Effective search space: 4347383004
Effective search space used: 4347383004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003390
(1233 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532603.2| PREDICTED: similar to Translation initiation fa... 623 e-178
Alignment gi|XP_547831.2| PREDICTED: similar to Translation initiation fa... 262 6e-70
Alignment gi|XP_862061.1| PREDICTED: similar to Translation initiation fa... 257 1e-68
Alignment gi|XP_850642.1| PREDICTED: similar to GDP-mannose pyrophosphory... 52 9e-07
Alignment gi|XP_541882.2| PREDICTED: similar to GDP-mannose pyrophosphory... 52 9e-07
>ref|XP_532603.2| PREDICTED: similar to Translation initiation factor eIF-2B gamma
subunit (eIF-2B GDP-GTP exchange factor) isoform 1 [Canis
familiaris].
Length = 452
Score = 623 bits (1606), Expect = e-178
Identities = 317/379 (83%), Positives = 337/379 (88%)
Frame = +2
Query: 95 MEFQAVVMAVGGGSRMTDLTSSVPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITTRDVQ 274
MEFQAVVM VG GSRMTDLTSS+P LLPVGNKPLIW P NLLERVGFEEVIVITTRDVQ
Sbjct: 1 MEFQAVVMPVGRGSRMTDLTSSIPTLLLPVGNKPLIWDPSNLLERVGFEEVIVITTRDVQ 60
Query: 275 KALCADFKMKMKLDIVCIADDADIGTADSLRYIYQKLKTDVLVLSCDLITDVALHEVVDL 454
KAL +FKMKMKLDIVCI D+AD GTADSLR IY KLKTDVLVLSCDLITDVALHEVVDL
Sbjct: 61 KALSGEFKMKMKLDIVCIPDEADKGTADSLRQIYPKLKTDVLVLSCDLITDVALHEVVDL 120
Query: 455 FRAHDATLAMLMRKGQDGLESVPGQKGKKKAVEQRDFVGVDSTGKRLLFMANEADLDEEL 634
FRAHDA+LAMLMRKGQD LE VPGQKGKKKAVEQRDF+GVDSTGKRLLFMANEADLDEEL
Sbjct: 121 FRAHDASLAMLMRKGQDDLEQVPGQKGKKKAVEQRDFIGVDSTGKRLLFMANEADLDEEL 180
Query: 635 VIKGAILQKHPRIRFHTGLVDAHLYCLRRYVVDFLMEYKSITSIRSELIPYLVRKQFSSA 814
VIKG+ILQKHPRI FHTGLVDAHLYCL++YVVDFLME KSITSIRSELIPYL+RKQFSSA
Sbjct: 181 VIKGSILQKHPRIHFHTGLVDAHLYCLKKYVVDFLMENKSITSIRSELIPYLIRKQFSSA 240
Query: 815 SSQQGQXXXXXXXXXXXXXTLDIYSFIKEVGPLTFALHDACWNACRGDSREDLSRSQVRC 994
SSQQGQ +LDI+SFIKE LTFA +DACWN CRG+ EDLS+SQVRC
Sbjct: 241 SSQQGQDEKEEDLKKKELKSLDIFSFIKEDNALTFAPYDACWNVCRGERWEDLSKSQVRC 300
Query: 995 YVHIMKEGLCSRVGTLGLYMEANRQVSKLLTVICPEETLVHPSAQIVSKHLIGADSLIGP 1174
YVHIMKEGLCSRV TLGLYMEANRQV KLL+V+CPEE+L+H SAQIV+KHLIG DSLIGP
Sbjct: 301 YVHIMKEGLCSRVSTLGLYMEANRQVPKLLSVLCPEESLIHSSAQIVNKHLIGVDSLIGP 360
Query: 1175 DTQVGEKSSRKRSVIGSSC 1231
DTQVGEKSS K SV+GSSC
Sbjct: 361 DTQVGEKSSIKHSVVGSSC 379
>ref|XP_547831.2| PREDICTED: similar to Translation initiation factor eIF-2B gamma
subunit (eIF-2B GDP-GTP exchange factor) [Canis
familiaris].
Length = 243
Score = 262 bits (669), Expect = 6e-70
Identities = 133/149 (89%), Positives = 139/149 (93%)
Frame = +2
Query: 95 MEFQAVVMAVGGGSRMTDLTSSVPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITTRDVQ 274
MEFQAVVMAVGGGSRMTDLTSS+PKPLL VGNKPLIWYPLNLL+RVGFEEVIVITTRDVQ
Sbjct: 1 MEFQAVVMAVGGGSRMTDLTSSIPKPLLLVGNKPLIWYPLNLLKRVGFEEVIVITTRDVQ 60
Query: 275 KALCADFKMKMKLDIVCIADDADIGTADSLRYIYQKLKTDVLVLSCDLITDVALHEVVDL 454
KAL A+FKMKMKLDIVCI D+AD GTADSL IY KLKTDVLVLSCDLITDVALHEVV+L
Sbjct: 61 KALSAEFKMKMKLDIVCIPDEADKGTADSLHQIYPKLKTDVLVLSCDLITDVALHEVVNL 120
Query: 455 FRAHDATLAMLMRKGQDGLESVPGQKGKK 541
FR HDA+LAMLMRKGQD LE VPGQKGKK
Sbjct: 121 FRVHDASLAMLMRKGQDDLEQVPGQKGKK 149
>ref|XP_862061.1| PREDICTED: similar to Translation initiation factor eIF-2B gamma
subunit (eIF-2B GDP-GTP exchange factor) isoform 2
[Canis familiaris].
Length = 155
Score = 257 bits (657), Expect = 1e-68
Identities = 133/151 (88%), Positives = 137/151 (90%)
Frame = +2
Query: 95 MEFQAVVMAVGGGSRMTDLTSSVPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITTRDVQ 274
MEFQAVVM VG GSRMTDLTSS+P LLPVGNKPLIW P NLLERVGFEEVIVITTRDVQ
Sbjct: 1 MEFQAVVMPVGRGSRMTDLTSSIPTLLLPVGNKPLIWDPSNLLERVGFEEVIVITTRDVQ 60
Query: 275 KALCADFKMKMKLDIVCIADDADIGTADSLRYIYQKLKTDVLVLSCDLITDVALHEVVDL 454
KAL +FKMKMKLDIVCI D+AD GTADSLR IY KLKTDVLVLSCDLITDVALHEVVDL
Sbjct: 61 KALSGEFKMKMKLDIVCIPDEADKGTADSLRQIYPKLKTDVLVLSCDLITDVALHEVVDL 120
Query: 455 FRAHDATLAMLMRKGQDGLESVPGQKGKKKA 547
FRAHDA+LAMLMRKGQD LE VPGQKGKKKA
Sbjct: 121 FRAHDASLAMLMRKGQDDLEQVPGQKGKKKA 151
>ref|XP_850642.1| PREDICTED: similar to GDP-mannose pyrophosphorylase B isoform 2
isoform 2 [Canis familiaris].
Length = 876
Score = 52.4 bits (124), Expect = 9e-07
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Frame = +2
Query: 104 QAVVMAVGGGSRMTDLTSSVPKPLLPVGNKPLIWYPLNLLERVGFEEVIVIT---TRDVQ 274
+A+++ G G+R+ LT S+PKPL+ NKP++ + + L G + VI+ ++ ++
Sbjct: 2 KALILVGGYGTRLRPLTLSIPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQMLE 61
Query: 275 KALCADFKMKMKLDIVCIADDADIGTADSL---RYIYQKLKTDVLVLSCDLITDVALHEV 445
K + A + ++ + I ++ +GTA L R + + VL+ D+I D +
Sbjct: 62 KEMKAQ-EQRLGIRISMSHEEEPLGTAGPLALARDLLSETADPFFVLNSDVICDFPFQAM 120
Query: 446 VDLFRAHDATLAMLMRKGQD 505
V R H ++L+ K ++
Sbjct: 121 VQFHRHHGQEGSILVTKVEE 140
>ref|XP_541882.2| PREDICTED: similar to GDP-mannose pyrophosphorylase B isoform 2
isoform 1 [Canis familiaris].
Length = 360
Score = 52.4 bits (124), Expect = 9e-07
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Frame = +2
Query: 104 QAVVMAVGGGSRMTDLTSSVPKPLLPVGNKPLIWYPLNLLERVGFEEVIVIT---TRDVQ 274
+A+++ G G+R+ LT S+PKPL+ NKP++ + + L G + VI+ ++ ++
Sbjct: 2 KALILVGGYGTRLRPLTLSIPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQMLE 61
Query: 275 KALCADFKMKMKLDIVCIADDADIGTADSL---RYIYQKLKTDVLVLSCDLITDVALHEV 445
K + A + ++ + I ++ +GTA L R + + VL+ D+I D +
Sbjct: 62 KEMKAQ-EQRLGIRISMSHEEEPLGTAGPLALARDLLSETADPFFVLNSDVICDFPFQAM 120
Query: 446 VDLFRAHDATLAMLMRKGQD 505
V R H ++L+ K ++
Sbjct: 121 VQFHRHHGQEGSILVTKVEE 140
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,939,001
Number of extensions: 1144652
Number of successful extensions: 3027
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3026
Number of HSP's successfully gapped: 5
Length of query: 411
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 306
Effective length of database: 15,374,224
Effective search space: 4704512544
Effective search space used: 4704512544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003390
(1233 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001160060.1| translation initiation factor eIF-2B subunit... 644 0.0
Alignment gi|NP_065098.1| translation initiation factor eIF-2B subunit ga... 644 0.0
Alignment gi|NP_037466.2| mannose-1-phosphate guanyltransferase beta isof... 51 2e-06
Alignment gi|NP_068806.1| mannose-1-phosphate guanyltransferase beta isof... 51 2e-06
>ref|NP_001160060.1| translation initiation factor eIF-2B subunit gamma isoform 2 [Homo
sapiens].
Length = 412
Score = 644 bits (1661), Expect = 0.0
Identities = 324/379 (85%), Positives = 343/379 (90%)
Frame = +2
Query: 95 MEFQAVVMAVGGGSRMTDLTSSVPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITTRDVQ 274
MEFQAVVMAVGGGSRMTDLTSS+PKPLLPVGNKPLIWYPLNLLERVGFEEVIV+TTRDVQ
Sbjct: 1 MEFQAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTTRDVQ 60
Query: 275 KALCADFKMKMKLDIVCIADDADIGTADSLRYIYQKLKTDVLVLSCDLITDVALHEVVDL 454
KALCA+FKMKMK DIVCI DDAD+GTADSLRYIY KLKTDVLVLSCDLITDVALHEVVDL
Sbjct: 61 KALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDVLVLSCDLITDVALHEVVDL 120
Query: 455 FRAHDATLAMLMRKGQDGLESVPGQKGKKKAVEQRDFVGVDSTGKRLLFMANEADLDEEL 634
FRA+DA+LAMLMRKGQD +E VPGQKGKKKAVEQRDF+GVDSTGKRLLFMANEADLDEEL
Sbjct: 121 FRAYDASLAMLMRKGQDSIEPVPGQKGKKKAVEQRDFIGVDSTGKRLLFMANEADLDEEL 180
Query: 635 VIKGAILQKHPRIRFHTGLVDAHLYCLRRYVVDFLMEYKSITSIRSELIPYLVRKQFSSA 814
VIKG+ILQKHPRIRFHTGLVDAHLYCL++Y+VDFLME SITSIRSELIPYLVRKQFSSA
Sbjct: 181 VIKGSILQKHPRIRFHTGLVDAHLYCLKKYIVDFLMENGSITSIRSELIPYLVRKQFSSA 240
Query: 815 SSQQGQXXXXXXXXXXXXXTLDIYSFIKEVGPLTFALHDACWNACRGDSREDLSRSQVRC 994
SSQQGQ +LDIYSFIKE L A +DACWNACRGD EDLSRSQVRC
Sbjct: 241 SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLNLAPYDACWNACRGDRWEDLSRSQVRC 300
Query: 995 YVHIMKEGLCSRVGTLGLYMEANRQVSKLLTVICPEETLVHPSAQIVSKHLIGADSLIGP 1174
YVHIMKEGLCSRV TLGLYMEANRQV KLL+ +CPEE VH SAQIVSKHL+G DSLIGP
Sbjct: 301 YVHIMKEGLCSRVSTLGLYMEANRQVPKLLSALCPEEPPVHSSAQIVSKHLVGVDSLIGP 360
Query: 1175 DTQVGEKSSRKRSVIGSSC 1231
+TQ+GEKSS KRSVIGSSC
Sbjct: 361 ETQIGEKSSIKRSVIGSSC 379
>ref|NP_065098.1| translation initiation factor eIF-2B subunit gamma isoform 1 [Homo
sapiens].
Length = 452
Score = 644 bits (1661), Expect = 0.0
Identities = 324/379 (85%), Positives = 343/379 (90%)
Frame = +2
Query: 95 MEFQAVVMAVGGGSRMTDLTSSVPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITTRDVQ 274
MEFQAVVMAVGGGSRMTDLTSS+PKPLLPVGNKPLIWYPLNLLERVGFEEVIV+TTRDVQ
Sbjct: 1 MEFQAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTTRDVQ 60
Query: 275 KALCADFKMKMKLDIVCIADDADIGTADSLRYIYQKLKTDVLVLSCDLITDVALHEVVDL 454
KALCA+FKMKMK DIVCI DDAD+GTADSLRYIY KLKTDVLVLSCDLITDVALHEVVDL
Sbjct: 61 KALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDVLVLSCDLITDVALHEVVDL 120
Query: 455 FRAHDATLAMLMRKGQDGLESVPGQKGKKKAVEQRDFVGVDSTGKRLLFMANEADLDEEL 634
FRA+DA+LAMLMRKGQD +E VPGQKGKKKAVEQRDF+GVDSTGKRLLFMANEADLDEEL
Sbjct: 121 FRAYDASLAMLMRKGQDSIEPVPGQKGKKKAVEQRDFIGVDSTGKRLLFMANEADLDEEL 180
Query: 635 VIKGAILQKHPRIRFHTGLVDAHLYCLRRYVVDFLMEYKSITSIRSELIPYLVRKQFSSA 814
VIKG+ILQKHPRIRFHTGLVDAHLYCL++Y+VDFLME SITSIRSELIPYLVRKQFSSA
Sbjct: 181 VIKGSILQKHPRIRFHTGLVDAHLYCLKKYIVDFLMENGSITSIRSELIPYLVRKQFSSA 240
Query: 815 SSQQGQXXXXXXXXXXXXXTLDIYSFIKEVGPLTFALHDACWNACRGDSREDLSRSQVRC 994
SSQQGQ +LDIYSFIKE L A +DACWNACRGD EDLSRSQVRC
Sbjct: 241 SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLNLAPYDACWNACRGDRWEDLSRSQVRC 300
Query: 995 YVHIMKEGLCSRVGTLGLYMEANRQVSKLLTVICPEETLVHPSAQIVSKHLIGADSLIGP 1174
YVHIMKEGLCSRV TLGLYMEANRQV KLL+ +CPEE VH SAQIVSKHL+G DSLIGP
Sbjct: 301 YVHIMKEGLCSRVSTLGLYMEANRQVPKLLSALCPEEPPVHSSAQIVSKHLVGVDSLIGP 360
Query: 1175 DTQVGEKSSRKRSVIGSSC 1231
+TQ+GEKSS KRSVIGSSC
Sbjct: 361 ETQIGEKSSIKRSVIGSSC 379
>ref|NP_037466.2| mannose-1-phosphate guanyltransferase beta isoform 1 [Homo
sapiens].
Length = 387
Score = 51.2 bits (121), Expect = 2e-06
Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Frame = +2
Query: 104 QAVVMAVGGGSRMTDLTSSVPKPLLPVGNKPLIWYPLNLLERVGFEEVIVIT---TRDVQ 274
+A+++ G G+R+ LT S PKPL+ NKP++ + + L G + VI+ ++ ++
Sbjct: 2 KALILVGGYGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQVLE 61
Query: 275 KALCADFKMKMKLDIVCIADDADIGTADSL---RYIYQKLKTDVLVLSCDLITDVALHEV 445
K + A + ++ + I ++ +GTA L R + + VL+ D+I D +
Sbjct: 62 KEMKAQ-EQRLGIRISMSHEEEPLGTAGPLALARDLLSETADPFFVLNSDVICDFPFQAM 120
Query: 446 VDLFRAHDATLAMLMRKGQD 505
V R H ++L+ K ++
Sbjct: 121 VQFHRHHGQEGSILVTKVEE 140
>ref|NP_068806.1| mannose-1-phosphate guanyltransferase beta isoform 2 [Homo
sapiens].
Length = 360
Score = 51.2 bits (121), Expect = 2e-06
Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Frame = +2
Query: 104 QAVVMAVGGGSRMTDLTSSVPKPLLPVGNKPLIWYPLNLLERVGFEEVIVIT---TRDVQ 274
+A+++ G G+R+ LT S PKPL+ NKP++ + + L G + VI+ ++ ++
Sbjct: 2 KALILVGGYGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQVLE 61
Query: 275 KALCADFKMKMKLDIVCIADDADIGTADSL---RYIYQKLKTDVLVLSCDLITDVALHEV 445
K + A + ++ + I ++ +GTA L R + + VL+ D+I D +
Sbjct: 62 KEMKAQ-EQRLGIRISMSHEEEPLGTAGPLALARDLLSETADPFFVLNSDVICDFPFQAM 120
Query: 446 VDLFRAHDATLAMLMRKGQD 505
V R H ++L+ K ++
Sbjct: 121 VQFHRHHGQEGSILVTKVEE 140
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,219,515
Number of extensions: 1136947
Number of successful extensions: 3322
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3314
Number of HSP's successfully gapped: 4
Length of query: 411
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 306
Effective length of database: 14,835,944
Effective search space: 4539798864
Effective search space used: 4539798864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003390
(1233 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001104747.1| eukaryotic translation initiation factor 2B,... 635 0.0
Alignment gi|NP_780344.2| eukaryotic translation initiation factor 2B, su... 635 0.0
Alignment gi|NP_808578.1| mannose-1-phosphate guanyltransferase beta [Mus... 51 2e-06
>ref|NP_001104747.1| eukaryotic translation initiation factor 2B, subunit 3 gamma isoform
1 [Mus musculus].
Length = 452
Score = 635 bits (1637), Expect = 0.0
Identities = 319/379 (84%), Positives = 345/379 (91%)
Frame = +2
Query: 95 MEFQAVVMAVGGGSRMTDLTSSVPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITTRDVQ 274
MEFQAVVMAVGGGSRMTDLTSS+PKPLLPVGNKPLIWYPLNLLERVGFEEVIV+TT+DVQ
Sbjct: 1 MEFQAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTTKDVQ 60
Query: 275 KALCADFKMKMKLDIVCIADDADIGTADSLRYIYQKLKTDVLVLSCDLITDVALHEVVDL 454
KALCA+FKMKMKLDIVCI D+AD+GTADSLR+IY KLKTDVLVLSCDLITDVALHEVVDL
Sbjct: 61 KALCAEFKMKMKLDIVCIPDEADMGTADSLRHIYPKLKTDVLVLSCDLITDVALHEVVDL 120
Query: 455 FRAHDATLAMLMRKGQDGLESVPGQKGKKKAVEQRDFVGVDSTGKRLLFMANEADLDEEL 634
FRA+DA+LAMLMRKGQ+ +E VPGQKGKKK VEQRDF+GVDSTGKRLLFMANEADLDEEL
Sbjct: 121 FRAYDASLAMLMRKGQESIEPVPGQKGKKKPVEQRDFIGVDSTGKRLLFMANEADLDEEL 180
Query: 635 VIKGAILQKHPRIRFHTGLVDAHLYCLRRYVVDFLMEYKSITSIRSELIPYLVRKQFSSA 814
VIKG+ILQKHPRI FHTGLVDAHLYCL++YVVDFLME +SITSIRSELIPYLVRKQFSSA
Sbjct: 181 VIKGSILQKHPRIHFHTGLVDAHLYCLKKYVVDFLMENRSITSIRSELIPYLVRKQFSSA 240
Query: 815 SSQQGQXXXXXXXXXXXXXTLDIYSFIKEVGPLTFALHDACWNACRGDSREDLSRSQVRC 994
SSQQ Q +LDIYSFIK+ LT A +DACWNA RGD EDLSRSQVRC
Sbjct: 241 SSQQRQEDKEEDLKKKELKSLDIYSFIKKDDTLTLAPYDACWNAFRGDKWEDLSRSQVRC 300
Query: 995 YVHIMKEGLCSRVGTLGLYMEANRQVSKLLTVICPEETLVHPSAQIVSKHLIGADSLIGP 1174
YVHIMKEGLCSRV TLGLYMEANRQV KLL+V+CPEE+++H SAQIV+KHLIGADSLIGP
Sbjct: 301 YVHIMKEGLCSRVSTLGLYMEANRQVPKLLSVLCPEESMIHSSAQIVNKHLIGADSLIGP 360
Query: 1175 DTQVGEKSSRKRSVIGSSC 1231
DTQ+GEKSS K SVIGSSC
Sbjct: 361 DTQIGEKSSIKHSVIGSSC 379
>ref|NP_780344.2| eukaryotic translation initiation factor 2B, subunit 3 gamma isoform
2 [Mus musculus].
Length = 445
Score = 635 bits (1637), Expect = 0.0
Identities = 319/379 (84%), Positives = 345/379 (91%)
Frame = +2
Query: 95 MEFQAVVMAVGGGSRMTDLTSSVPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITTRDVQ 274
MEFQAVVMAVGGGSRMTDLTSS+PKPLLPVGNKPLIWYPLNLLERVGFEEVIV+TT+DVQ
Sbjct: 1 MEFQAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTTKDVQ 60
Query: 275 KALCADFKMKMKLDIVCIADDADIGTADSLRYIYQKLKTDVLVLSCDLITDVALHEVVDL 454
KALCA+FKMKMKLDIVCI D+AD+GTADSLR+IY KLKTDVLVLSCDLITDVALHEVVDL
Sbjct: 61 KALCAEFKMKMKLDIVCIPDEADMGTADSLRHIYPKLKTDVLVLSCDLITDVALHEVVDL 120
Query: 455 FRAHDATLAMLMRKGQDGLESVPGQKGKKKAVEQRDFVGVDSTGKRLLFMANEADLDEEL 634
FRA+DA+LAMLMRKGQ+ +E VPGQKGKKK VEQRDF+GVDSTGKRLLFMANEADLDEEL
Sbjct: 121 FRAYDASLAMLMRKGQESIEPVPGQKGKKKPVEQRDFIGVDSTGKRLLFMANEADLDEEL 180
Query: 635 VIKGAILQKHPRIRFHTGLVDAHLYCLRRYVVDFLMEYKSITSIRSELIPYLVRKQFSSA 814
VIKG+ILQKHPRI FHTGLVDAHLYCL++YVVDFLME +SITSIRSELIPYLVRKQFSSA
Sbjct: 181 VIKGSILQKHPRIHFHTGLVDAHLYCLKKYVVDFLMENRSITSIRSELIPYLVRKQFSSA 240
Query: 815 SSQQGQXXXXXXXXXXXXXTLDIYSFIKEVGPLTFALHDACWNACRGDSREDLSRSQVRC 994
SSQQ Q +LDIYSFIK+ LT A +DACWNA RGD EDLSRSQVRC
Sbjct: 241 SSQQRQEDKEEDLKKKELKSLDIYSFIKKDDTLTLAPYDACWNAFRGDKWEDLSRSQVRC 300
Query: 995 YVHIMKEGLCSRVGTLGLYMEANRQVSKLLTVICPEETLVHPSAQIVSKHLIGADSLIGP 1174
YVHIMKEGLCSRV TLGLYMEANRQV KLL+V+CPEE+++H SAQIV+KHLIGADSLIGP
Sbjct: 301 YVHIMKEGLCSRVSTLGLYMEANRQVPKLLSVLCPEESMIHSSAQIVNKHLIGADSLIGP 360
Query: 1175 DTQVGEKSSRKRSVIGSSC 1231
DTQ+GEKSS K SVIGSSC
Sbjct: 361 DTQIGEKSSIKHSVIGSSC 379
>ref|NP_808578.1| mannose-1-phosphate guanyltransferase beta [Mus musculus].
Length = 360
Score = 51.2 bits (121), Expect = 2e-06
Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Frame = +2
Query: 104 QAVVMAVGGGSRMTDLTSSVPKPLLPVGNKPLIWYPLNLLERVGFEEVIVIT---TRDVQ 274
+A+++ G G+R+ LT S PKPL+ NKP++ + + L G + VI+ ++ ++
Sbjct: 2 KALILVGGYGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQMLE 61
Query: 275 KALCADFKMKMKLDIVCIADDADIGTADSL---RYIYQKLKTDVLVLSCDLITDVALHEV 445
K + A + ++ + I ++ +GTA L R + + VL+ D+I D +
Sbjct: 62 KEMKAQ-EQRLGIRISMSHEEEPLGTAGPLALARDLLSETADPFFVLNSDVICDFPFQAM 120
Query: 446 VDLFRAHDATLAMLMRKGQD 505
V R H ++L+ K ++
Sbjct: 121 VQFHRHHGQEGSILVTKVEE 140
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,589,547
Number of extensions: 965407
Number of successful extensions: 2763
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2762
Number of HSP's successfully gapped: 3
Length of query: 411
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 307
Effective length of database: 12,493,815
Effective search space: 3835601205
Effective search space used: 3835601205
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003390
(1233 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356532.1| PREDICTED: translation initiation factor eIF... 712 0.0
Alignment gi|XP_003132265.1| PREDICTED: mannose-1-phosphate guanyltransfe... 52 5e-07
>ref|XP_003356532.1| PREDICTED: translation initiation factor eIF-2B subunit gamma-like
[Sus scrofa].
Length = 452
Score = 712 bits (1839), Expect = 0.0
Identities = 363/379 (95%), Positives = 364/379 (96%)
Frame = +2
Query: 95 MEFQAVVMAVGGGSRMTDLTSSVPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITTRDVQ 274
MEFQAVVMAVGGGSRMTDLTSSVPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITTRDVQ
Sbjct: 1 MEFQAVVMAVGGGSRMTDLTSSVPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITTRDVQ 60
Query: 275 KALCADFKMKMKLDIVCIADDADIGTADSLRYIYQKLKTDVLVLSCDLITDVALHEVVDL 454
KALCADFKMKMKLDIVCIADDADIGTADSLRYIYQKLKTDVLVLSCDLITDVALHEVVDL
Sbjct: 61 KALCADFKMKMKLDIVCIADDADIGTADSLRYIYQKLKTDVLVLSCDLITDVALHEVVDL 120
Query: 455 FRAHDATLAMLMRKGQDGLESVPGQKGKKKAVEQRDFVGVDSTGKRLLFMANEADLDEEL 634
FRAHDATLAMLMRKGQDGLESVPGQKGKKKAVEQRDFVGVDSTGKRLLFMANEADLDEEL
Sbjct: 121 FRAHDATLAMLMRKGQDGLESVPGQKGKKKAVEQRDFVGVDSTGKRLLFMANEADLDEEL 180
Query: 635 VIKGAILQKHPRIRFHTGLVDAHLYCLRRYVVDFLMEYKSITSIRSELIPYLVRKQFSSA 814
VIKGAILQKHPRIRFHTGLVDAHLYCLRRYVVDFLMEYKSITSIRSELIPYLVRKQFSSA
Sbjct: 181 VIKGAILQKHPRIRFHTGLVDAHLYCLRRYVVDFLMEYKSITSIRSELIPYLVRKQFSSA 240
Query: 815 SSQQGQXXXXXXXXXXXXXTLDIYSFIKEVGPLTFALHDACWNACRGDSREDLSRSQVRC 994
SSQQGQ TLDIYSFIKEVGPLTFALHDACWNACRGDSREDLSRSQVRC
Sbjct: 241 SSQQGQEEKEEELKKKELKTLDIYSFIKEVGPLTFALHDACWNACRGDSREDLSRSQVRC 300
Query: 995 YVHIMKEGLCSRVGTLGLYMEANRQVSKLLTVICPEETLVHPSAQIVSKHLIGADSLIGP 1174
YVHIMKEGLCSRVGTLGLYMEANRQVSKLL VICPEE+LVHPSAQIVSKHLIGADSLIGP
Sbjct: 301 YVHIMKEGLCSRVGTLGLYMEANRQVSKLLPVICPEESLVHPSAQIVSKHLIGADSLIGP 360
Query: 1175 DTQVGEKSSRKRSVIGSSC 1231
DTQVGEKSS KRSVIGSSC
Sbjct: 361 DTQVGEKSSVKRSVIGSSC 379
>ref|XP_003132265.1| PREDICTED: mannose-1-phosphate guanyltransferase beta-like [Sus
scrofa].
Length = 360
Score = 52.4 bits (124), Expect = 5e-07
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Frame = +2
Query: 104 QAVVMAVGGGSRMTDLTSSVPKPLLPVGNKPLIWYPLNLLERVGFEEVIVIT---TRDVQ 274
+A+++ G G+R+ LT S+PKPL+ NKP++ + + L G + VI+ ++ ++
Sbjct: 2 KALILVGGYGTRLRPLTLSIPKPLVDFCNKPILLHQVEALASAGVDHVILAVSYMSQMLE 61
Query: 275 KALCADFKMKMKLDIVCIADDADIGTADSL---RYIYQKLKTDVLVLSCDLITDVALHEV 445
K + A + ++ + I ++ +GTA L R + + VL+ D+I D +
Sbjct: 62 KEMKAQ-EQRLGIRISMSHEEEPLGTAGPLALARDLLSETAEPFFVLNSDVICDFPFQAM 120
Query: 446 VDLFRAHDATLAMLMRKGQD 505
V R H ++L+ K ++
Sbjct: 121 VQFHRHHGQEGSILVTKVEE 140
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,399,674
Number of extensions: 715184
Number of successful extensions: 2066
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2063
Number of HSP's successfully gapped: 2
Length of query: 411
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 310
Effective length of database: 8,829,335
Effective search space: 2737093850
Effective search space used: 2737093850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003390
(1233 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 389 e-105
>Sscrofa_Chr06
|| Length = 157765593
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Plus
Query: 877 agatatttacagctttataaaagaagtcgggccgctgacctttgctctccacgatgcctg 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153870879 agatatttacagctttataaaagaagtcgggccgctgacctttgctctccacgatgcctg 153870938
Query: 937 ctggaatgcctgtcgaggagacagccgggaagacttgtccagatcacaggtgcgctgcta 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153870939 ctggaatgcctgtcgaggagacagccgggaagacttgtccagatcacaggtgcgctgcta 153870998
Query: 997 tgtccacatcatgaaggaggggctctgctctcgagtgggcaccctaggactctacatgga 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153870999 tgtccacatcatgaaggaggggctctgctctcgagtgggcaccctaggactctacatgga 153871058
Query: 1057 ggcaaacagacaggtg 1072
||||||||||||||||
Sbjct: 153871059 ggcaaacagacaggtg 153871074
Score = 315 bits (159), Expect = 3e-83
Identities = 159/159 (100%)
Strand = Plus / Plus
Query: 84 agcttgtaaaaatggaatttcaagcagtggtaatggcagttggagggggctctcggatga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153769523 agcttgtaaaaatggaatttcaagcagtggtaatggcagttggagggggctctcggatga 153769582
Query: 144 cagacctgacctccagtgttcccaaacctctgcttccagttgggaacaaacctttaatat 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153769583 cagacctgacctccagtgttcccaaacctctgcttccagttgggaacaaacctttaatat 153769642
Query: 204 ggtacccattgaacctgctggaacgcgttggatttgaag 242
|||||||||||||||||||||||||||||||||||||||
Sbjct: 153769643 ggtacccattgaacctgctggaacgcgttggatttgaag 153769681
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 387 agacagatgttttggtcctgagttgtgatctgataacagatgttgccttacatgaggttg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153813299 agacagatgttttggtcctgagttgtgatctgataacagatgttgccttacatgaggttg 153813358
Query: 447 tggacctgtttagagctcatgatgcgaccctcgccatgttaatgagaaaaggccaagacg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153813359 tggacctgtttagagctcatgatgcgaccctcgccatgttaatgagaaaaggccaagacg 153813418
Query: 507 gcttggaatcagttccaggtcaaaagggg 535
|||||||||||||||||||||||||||||
Sbjct: 153813419 gcttggaatcagttccaggtcaaaagggg 153813447
Score = 293 bits (148), Expect = 1e-76
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 241 agaagtcattgtcattacaaccagggatgtccagaaggctctatgtgcagacttcaagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153776448 agaagtcattgtcattacaaccagggatgtccagaaggctctatgtgcagacttcaagat 153776507
Query: 301 gaaaatgaagctagatattgtgtgtattgctgatgacgctgacataggaactgcagattc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153776508 gaaaatgaagctagatattgtgtgtattgctgatgacgctgacataggaactgcagattc 153776567
Query: 361 tctgcgctacatatatcagaaacttaag 388
||||||||||||||||||||||||||||
Sbjct: 153776568 tctgcgctacatatatcagaaacttaag 153776595
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 751 gtcaatcacttccatccggagtgaactgatcccatacttagtgagaaaacagttctcctc 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153869620 gtcaatcacttccatccggagtgaactgatcccatacttagtgagaaaacagttctcctc 153869679
Query: 811 agcttcatcacaacaaggacaagaagagaaagaggaggagctaaagaaaaaggagctgaa 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153869680 agcttcatcacaacaaggacaagaagagaaagaggaggagctaaagaaaaaggagctgaa 153869739
Query: 871 gactttag 878
||||||||
Sbjct: 153869740 gactttag 153869747
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 546 cagtggagcagcgtgacttcgttggagtggacagcacgggaaagaggctgctcttcatgg 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153834878 cagtggagcagcgtgacttcgttggagtggacagcacgggaaagaggctgctcttcatgg 153834937
Query: 606 ctaatgaagcagacttggatgaggagctggtcattaagggagccatcctgcagaag 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153834938 ctaatgaagcagacttggatgaggagctggtcattaagggagccatcctgcagaag 153834993
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 661 gcaccctcggatacgtttccacacgggcctcgtggacgcgcacctctactgcttgagaag 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153851217 gcaccctcggatacgtttccacacgggcctcgtggacgcgcacctctactgcttgagaag 153851276
Query: 721 atacgtcgtggacttcctcatggaatataagt 752
||||||||||||||||||||||||||||||||
Sbjct: 153851277 atacgtcgtggacttcctcatggaatataagt 153851308
Score = 168 bits (85), Expect = 5e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 tcggccatcgcgcgcctgcgcctttgggctgtcaggcagcggcggcgtggggagcgttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153765230 tcggccatcgcgcgcctgcgcctttgggctgtcaggcagcggcggcgtggggagcgttgg 153765289
Query: 61 gagcggtggcggcgcgcgacccgag 85
|||||||||||||||||||||||||
Sbjct: 153765290 gagcggtggcggcgcgcgacccgag 153765314
Score = 157 bits (79), Expect = 2e-35
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 1147 gatcggagctgacagcctcattgggccagatacacaggttggcgagaagtcctcccgtaa 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 153873731 gatcggagctgacagcctcattgggccagatacacaggttggcgagaagtcctccgttaa 153873790
Query: 1207 gcgctcggtcattgggtcatcctgtgt 1233
|||||||||||||||||||||||||||
Sbjct: 153873791 gcgctcggtcattgggtcatcctgtgt 153873817
Score = 135 bits (68), Expect = 6e-29
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 1068 aggtgtccaaattgctaactgttatctgtccagaagaaacactggtgcatccatcagccc 1127
||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct: 153873137 aggtgtccaaattgctacctgttatctgtccagaagaatcgctggtgcatccatcagccc 153873196
Query: 1128 agattgtcagcaaacacctg 1147
||||||||||||||||||||
Sbjct: 153873197 agattgtcagcaaacacctg 153873216
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,872,482
Number of extensions: 222
Number of successful extensions: 222
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 10
Length of query: 1233
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1212
Effective length of database: 2,808,413,156
Effective search space: 3403796745072
Effective search space used: 3403796745072
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)