Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003399
(1440 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068960.1| vacuolar fusion protein CCZ1 homolog [Bos ta... 855 0.0
>ref|NP_001068960.1| vacuolar fusion protein CCZ1 homolog [Bos taurus].
Length = 480
Score = 855 bits (2208), Expect(2) = 0.0
Identities = 416/432 (96%), Positives = 424/432 (98%)
Frame = +3
Query: 117 QEKQFPPALLSFFIYNPRFGPREGEEENKILFYYPNEVEKNEKIRNVGLCEAIVQFTRTF 296
QEKQFPPALLSFFIYNPRFGPREGEEENKILFYYPNEVEKNEKIRNVGLCEAIVQFTRTF
Sbjct: 14 QEKQFPPALLSFFIYNPRFGPREGEEENKILFYYPNEVEKNEKIRNVGLCEAIVQFTRTF 73
Query: 297 SPSKPAKSLHTQKNRQFFNEPEDNFWMVMVVRNPIIEKQSKDGKPIVEYQEEELLDKVYS 476
SPSKPAKSLHTQKNRQFFNEPE+NFWMVMVVRNPIIEKQSKDGKP+VEYQEEELLDKVYS
Sbjct: 74 SPSKPAKSLHTQKNRQFFNEPEENFWMVMVVRNPIIEKQSKDGKPVVEYQEEELLDKVYS 133
Query: 477 SVLQQCYSMYKLFNGTFLRAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISF 656
SVLQQCYSMYKLFNGTFLRAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISF
Sbjct: 134 SVLQQCYSMYKLFNGTFLRAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISF 193
Query: 657 FPLDKMTYLKIQSFINRMEESLSIVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPR 836
FPLDKMTYLKIQSFINRMEESLSIVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPR
Sbjct: 194 FPLDKMTYLKIQSFINRMEESLSIVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPR 253
Query: 837 HIEPELAGRDSPIRAEMPGNLQHYGRFLTGPLNLNDPEAKCRFPKIFVNTDDTYEALHLI 1016
HIEPELAGRDSPIRAEMPGNLQHYGRFLTGPLNLNDPEAKCRFPKIFVNTDDTYEALHLI
Sbjct: 254 HIEPELAGRDSPIRAEMPGNLQHYGRFLTGPLNLNDPEAKCRFPKIFVNTDDTYEALHLI 313
Query: 1017 VYKAMSAAVCFMIDASIQPTLDFCRRLDGIVGPQLTVLASDICEQFNVNKRISGSEKEPQ 1196
VYKAMSAAVCFMIDASIQPTLDFCRRLD IVGPQLTVLASDICEQFN+NKR+SGSEKEPQ
Sbjct: 314 VYKAMSAAVCFMIDASIQPTLDFCRRLDSIVGPQLTVLASDICEQFNINKRMSGSEKEPQ 373
Query: 1197 FKYIYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTREDEDREVIVKAMS 1376
FK+IYFNHMNLAEKST+HMRKTPSVSLTSVHPDLMKILGDINSDFTR DED E+IVKAMS
Sbjct: 374 FKFIYFNHMNLAEKSTVHMRKTPSVSLTSVHPDLMKILGDINSDFTRVDEDEEIIVKAMS 433
Query: 1377 DYWGXGRNLXQR 1412
DYW G+ QR
Sbjct: 434 DYWVVGKKSDQR 445
Score = 24.6 bits (52), Expect(2) = 0.0
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 1394 QKSXSAELYVILNQK 1438
+KS ELYVILNQK
Sbjct: 440 KKSDQRELYVILNQK 454
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,610,669
Number of extensions: 1131217
Number of successful extensions: 3231
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3231
Number of HSP's successfully gapped: 2
Length of query: 480
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 374
Effective length of database: 14,174,046
Effective search space: 5301093204
Effective search space used: 5301093204
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003399
(1440 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536878.2| PREDICTED: similar to CG14980-PB isoform 1 [Can... 853 0.0
Alignment gi|XP_861263.1| PREDICTED: similar to CG14980-PB isoform 3 [Can... 498 e-141
Alignment gi|XP_861207.1| PREDICTED: similar to CG14980-PB isoform 2 [Can... 124 3e-28
>ref|XP_536878.2| PREDICTED: similar to CG14980-PB isoform 1 [Canis familiaris].
Length = 480
Score = 853 bits (2205), Expect(2) = 0.0
Identities = 417/432 (96%), Positives = 424/432 (98%)
Frame = +3
Query: 117 QEKQFPPALLSFFIYNPRFGPREGEEENKILFYYPNEVEKNEKIRNVGLCEAIVQFTRTF 296
QEKQFPPALLSFFIYNPRFGPREGEEENKILFY+PNEVEKNEKIRNVGLCEAIVQFTRTF
Sbjct: 14 QEKQFPPALLSFFIYNPRFGPREGEEENKILFYHPNEVEKNEKIRNVGLCEAIVQFTRTF 73
Query: 297 SPSKPAKSLHTQKNRQFFNEPEDNFWMVMVVRNPIIEKQSKDGKPIVEYQEEELLDKVYS 476
SPSKPAKSLHTQKNRQFFNEPE+NFWMVMVVRNPIIEKQSKDGKPIVEYQEEELLDKVYS
Sbjct: 74 SPSKPAKSLHTQKNRQFFNEPEENFWMVMVVRNPIIEKQSKDGKPIVEYQEEELLDKVYS 133
Query: 477 SVLQQCYSMYKLFNGTFLRAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISF 656
SVLQQCYSMYKLFNGTFLRAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISF
Sbjct: 134 SVLQQCYSMYKLFNGTFLRAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISF 193
Query: 657 FPLDKMTYLKIQSFINRMEESLSIVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPR 836
FPLDKMTYLKIQSFINRMEESLSIVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPR
Sbjct: 194 FPLDKMTYLKIQSFINRMEESLSIVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPR 253
Query: 837 HIEPELAGRDSPIRAEMPGNLQHYGRFLTGPLNLNDPEAKCRFPKIFVNTDDTYEALHLI 1016
HIEPELAGRDSP+RAEMPGNLQHYGRFLTGPLNLNDPEAKCRFPKIFVNTDDTYEALHLI
Sbjct: 254 HIEPELAGRDSPVRAEMPGNLQHYGRFLTGPLNLNDPEAKCRFPKIFVNTDDTYEALHLI 313
Query: 1017 VYKAMSAAVCFMIDASIQPTLDFCRRLDGIVGPQLTVLASDICEQFNVNKRISGSEKEPQ 1196
VYKAMSAAVCFMIDAS+QPTLDFCRRLD IVGPQLTVLASDICEQFNVNKR+SGSEKEPQ
Sbjct: 314 VYKAMSAAVCFMIDASVQPTLDFCRRLDSIVGPQLTVLASDICEQFNVNKRMSGSEKEPQ 373
Query: 1197 FKYIYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTREDEDREVIVKAMS 1376
FK+IYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTR DED EVIVKAMS
Sbjct: 374 FKFIYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTRVDEDEEVIVKAMS 433
Query: 1377 DYWGXGRNLXQR 1412
DYW G+ QR
Sbjct: 434 DYWVVGKKSDQR 445
Score = 24.6 bits (52), Expect(2) = 0.0
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 1394 QKSXSAELYVILNQK 1438
+KS ELYVILNQK
Sbjct: 440 KKSDQRELYVILNQK 454
>ref|XP_861263.1| PREDICTED: similar to CG14980-PB isoform 3 [Canis familiaris].
Length = 422
Score = 498 bits (1283), Expect = e-141
Identities = 243/245 (99%), Positives = 245/245 (100%)
Frame = +3
Query: 117 QEKQFPPALLSFFIYNPRFGPREGEEENKILFYYPNEVEKNEKIRNVGLCEAIVQFTRTF 296
QEKQFPPALLSFFIYNPRFGPREGEEENKILFY+PNEVEKNEKIRNVGLCEAIVQFTRTF
Sbjct: 14 QEKQFPPALLSFFIYNPRFGPREGEEENKILFYHPNEVEKNEKIRNVGLCEAIVQFTRTF 73
Query: 297 SPSKPAKSLHTQKNRQFFNEPEDNFWMVMVVRNPIIEKQSKDGKPIVEYQEEELLDKVYS 476
SPSKPAKSLHTQKNRQFFNEPE+NFWMVMVVRNPIIEKQSKDGKPIVEYQEEELLDKVYS
Sbjct: 74 SPSKPAKSLHTQKNRQFFNEPEENFWMVMVVRNPIIEKQSKDGKPIVEYQEEELLDKVYS 133
Query: 477 SVLQQCYSMYKLFNGTFLRAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISF 656
SVLQQCYSMYKLFNGTFLRAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISF
Sbjct: 134 SVLQQCYSMYKLFNGTFLRAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISF 193
Query: 657 FPLDKMTYLKIQSFINRMEESLSIVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPR 836
FPLDKMTYLKIQSFINRMEESLSIVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPR
Sbjct: 194 FPLDKMTYLKIQSFINRMEESLSIVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPR 253
Query: 837 HIEPE 851
HIEPE
Sbjct: 254 HIEPE 258
Score = 239 bits (610), Expect(2) = 7e-64
Identities = 117/130 (90%), Positives = 122/130 (93%)
Frame = +3
Query: 1023 KAMSAAVCFMIDASIQPTLDFCRRLDGIVGPQLTVLASDICEQFNVNKRISGSEKEPQFK 1202
+AMSAAVCFMIDAS+QPTLDFCRRLD IVGPQLTVLASDICEQFNVNKR+SGSEKEPQFK
Sbjct: 258 EAMSAAVCFMIDASVQPTLDFCRRLDSIVGPQLTVLASDICEQFNVNKRMSGSEKEPQFK 317
Query: 1203 YIYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTREDEDREVIVKAMSDY 1382
+IYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTR DED EVIVKAMSDY
Sbjct: 318 FIYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTRVDEDEEVIVKAMSDY 377
Query: 1383 WGXGRNLXQR 1412
W G+ QR
Sbjct: 378 WVVGKKSDQR 387
Score = 24.6 bits (52), Expect(2) = 7e-64
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 1394 QKSXSAELYVILNQK 1438
+KS ELYVILNQK
Sbjct: 382 KKSDQRELYVILNQK 396
>ref|XP_861207.1| PREDICTED: similar to CG14980-PB isoform 2 [Canis familiaris].
Length = 76
Score = 124 bits (310), Expect = 3e-28
Identities = 58/60 (96%), Positives = 59/60 (98%)
Frame = +3
Query: 117 QEKQFPPALLSFFIYNPRFGPREGEEENKILFYYPNEVEKNEKIRNVGLCEAIVQFTRTF 296
QEKQFPPALLSFFIYNPRFGPREGEEENKILFY+PNEVEKNEKIRNVGLCEAIVQFTR F
Sbjct: 14 QEKQFPPALLSFFIYNPRFGPREGEEENKILFYHPNEVEKNEKIRNVGLCEAIVQFTRLF 73
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,862,442
Number of extensions: 1175482
Number of successful extensions: 3130
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3128
Number of HSP's successfully gapped: 6
Length of query: 480
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 373
Effective length of database: 15,307,552
Effective search space: 5709716896
Effective search space used: 5709716896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003399
(1440 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056437.4| vacuolar fusion protein CCZ1 homolog [Homo sapi... 840 0.0
Alignment gi|NP_932765.1| vacuolar fusion protein CCZ1 homolog-like [Homo... 840 0.0
>ref|NP_056437.4| vacuolar fusion protein CCZ1 homolog [Homo sapiens].
Length = 482
Score = 840 bits (2171), Expect(2) = 0.0
Identities = 405/432 (93%), Positives = 422/432 (97%)
Frame = +3
Query: 117 QEKQFPPALLSFFIYNPRFGPREGEEENKILFYYPNEVEKNEKIRNVGLCEAIVQFTRTF 296
QEKQFPPALLSFFIYNPRFGPREG+EENKILFY+PNEVEKNEKIRNVGLCEAIVQFTRTF
Sbjct: 16 QEKQFPPALLSFFIYNPRFGPREGQEENKILFYHPNEVEKNEKIRNVGLCEAIVQFTRTF 75
Query: 297 SPSKPAKSLHTQKNRQFFNEPEDNFWMVMVVRNPIIEKQSKDGKPIVEYQEEELLDKVYS 476
SPSKPAKSLHTQKNRQFFNEPE+NFWMVMVVRNPIIEKQSKDGKP++EYQEEELLDKVYS
Sbjct: 76 SPSKPAKSLHTQKNRQFFNEPEENFWMVMVVRNPIIEKQSKDGKPVIEYQEEELLDKVYS 135
Query: 477 SVLQQCYSMYKLFNGTFLRAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISF 656
SVL+QCYSMYKLFNGTFL+AMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISF
Sbjct: 136 SVLRQCYSMYKLFNGTFLKAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISF 195
Query: 657 FPLDKMTYLKIQSFINRMEESLSIVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPR 836
FPLDKMTYLKIQSFINRMEESL+IVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPR
Sbjct: 196 FPLDKMTYLKIQSFINRMEESLNIVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPR 255
Query: 837 HIEPELAGRDSPIRAEMPGNLQHYGRFLTGPLNLNDPEAKCRFPKIFVNTDDTYEALHLI 1016
HIEPELAGRDSPIRAEMPGNLQHYGRFLTGPLNLNDP+AKCRFPKIFVNTDDTYE LHLI
Sbjct: 256 HIEPELAGRDSPIRAEMPGNLQHYGRFLTGPLNLNDPDAKCRFPKIFVNTDDTYEELHLI 315
Query: 1017 VYKAMSAAVCFMIDASIQPTLDFCRRLDGIVGPQLTVLASDICEQFNVNKRISGSEKEPQ 1196
VYKAMSAAVCFMIDAS+ PTLDFCRRLD IVGPQLTVLASDICEQFN+NKR+SGSEKEPQ
Sbjct: 316 VYKAMSAAVCFMIDASVHPTLDFCRRLDSIVGPQLTVLASDICEQFNINKRMSGSEKEPQ 375
Query: 1197 FKYIYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTREDEDREVIVKAMS 1376
FK+IYFNHMNLAEKST+HMRKTPSVSLTSVHPDLMKILGDINSDFTR DED E+IVKAMS
Sbjct: 376 FKFIYFNHMNLAEKSTVHMRKTPSVSLTSVHPDLMKILGDINSDFTRVDEDEEIIVKAMS 435
Query: 1377 DYWGXGRNLXQR 1412
DYW G+ +R
Sbjct: 436 DYWVVGKKSDRR 447
Score = 24.3 bits (51), Expect(2) = 0.0
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 1394 QKSXSAELYVILNQK 1438
+KS ELYVILNQK
Sbjct: 442 KKSDRRELYVILNQK 456
>ref|NP_932765.1| vacuolar fusion protein CCZ1 homolog-like [Homo sapiens].
Length = 482
Score = 840 bits (2171), Expect(2) = 0.0
Identities = 405/432 (93%), Positives = 422/432 (97%)
Frame = +3
Query: 117 QEKQFPPALLSFFIYNPRFGPREGEEENKILFYYPNEVEKNEKIRNVGLCEAIVQFTRTF 296
QEKQFPPALLSFFIYNPRFGPREG+EENKILFY+PNEVEKNEKIRNVGLCEAIVQFTRTF
Sbjct: 16 QEKQFPPALLSFFIYNPRFGPREGQEENKILFYHPNEVEKNEKIRNVGLCEAIVQFTRTF 75
Query: 297 SPSKPAKSLHTQKNRQFFNEPEDNFWMVMVVRNPIIEKQSKDGKPIVEYQEEELLDKVYS 476
SPSKPAKSLHTQKNRQFFNEPE+NFWMVMVVRNPIIEKQSKDGKP++EYQEEELLDKVYS
Sbjct: 76 SPSKPAKSLHTQKNRQFFNEPEENFWMVMVVRNPIIEKQSKDGKPVIEYQEEELLDKVYS 135
Query: 477 SVLQQCYSMYKLFNGTFLRAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISF 656
SVL+QCYSMYKLFNGTFL+AMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISF
Sbjct: 136 SVLRQCYSMYKLFNGTFLKAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISF 195
Query: 657 FPLDKMTYLKIQSFINRMEESLSIVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPR 836
FPLDKMTYLKIQSFINRMEESL+IVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPR
Sbjct: 196 FPLDKMTYLKIQSFINRMEESLNIVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPR 255
Query: 837 HIEPELAGRDSPIRAEMPGNLQHYGRFLTGPLNLNDPEAKCRFPKIFVNTDDTYEALHLI 1016
HIEPELAGRDSPIRAEMPGNLQHYGRFLTGPLNLNDP+AKCRFPKIFVNTDDTYE LHLI
Sbjct: 256 HIEPELAGRDSPIRAEMPGNLQHYGRFLTGPLNLNDPDAKCRFPKIFVNTDDTYEELHLI 315
Query: 1017 VYKAMSAAVCFMIDASIQPTLDFCRRLDGIVGPQLTVLASDICEQFNVNKRISGSEKEPQ 1196
VYKAMSAAVCFMIDAS+ PTLDFCRRLD IVGPQLTVLASDICEQFN+NKR+SGSEKEPQ
Sbjct: 316 VYKAMSAAVCFMIDASVHPTLDFCRRLDSIVGPQLTVLASDICEQFNINKRMSGSEKEPQ 375
Query: 1197 FKYIYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTREDEDREVIVKAMS 1376
FK+IYFNHMNLAEKST+HMRKTPSVSLTSVHPDLMKILGDINSDFTR DED E+IVKAMS
Sbjct: 376 FKFIYFNHMNLAEKSTVHMRKTPSVSLTSVHPDLMKILGDINSDFTRVDEDEEIIVKAMS 435
Query: 1377 DYWGXGRNLXQR 1412
DYW G+ +R
Sbjct: 436 DYWVVGKKSDRR 447
Score = 24.3 bits (51), Expect(2) = 0.0
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 1394 QKSXSAELYVILNQK 1438
+KS ELYVILNQK
Sbjct: 442 KKSDRRELYVILNQK 456
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,983,501
Number of extensions: 1166301
Number of successful extensions: 3332
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3331
Number of HSP's successfully gapped: 4
Length of query: 480
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 374
Effective length of database: 14,802,980
Effective search space: 5536314520
Effective search space used: 5536314520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003399
(1440 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_808350.1| vacuolar fusion protein CCZ1 homolog [Mus muscu... 840 0.0
>ref|NP_808350.1| vacuolar fusion protein CCZ1 homolog [Mus musculus].
Length = 480
Score = 840 bits (2169), Expect = 0.0
Identities = 409/432 (94%), Positives = 419/432 (96%)
Frame = +3
Query: 117 QEKQFPPALLSFFIYNPRFGPREGEEENKILFYYPNEVEKNEKIRNVGLCEAIVQFTRTF 296
QEKQFPPALLSFFIYNPRFGPREGEEENKILFY+PNEVEKNEKIRNVGLCEAIVQFTRTF
Sbjct: 14 QEKQFPPALLSFFIYNPRFGPREGEEENKILFYHPNEVEKNEKIRNVGLCEAIVQFTRTF 73
Query: 297 SPSKPAKSLHTQKNRQFFNEPEDNFWMVMVVRNPIIEKQSKDGKPIVEYQEEELLDKVYS 476
SPSKPAKSLHTQKNRQFFNEPE+NFWMVMVVRNPIIEKQSKDGK +VEYQEEELLDKVYS
Sbjct: 74 SPSKPAKSLHTQKNRQFFNEPEENFWMVMVVRNPIIEKQSKDGKAVVEYQEEELLDKVYS 133
Query: 477 SVLQQCYSMYKLFNGTFLRAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISF 656
SVLQQCYSMYKLFNGTFL+AMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISF
Sbjct: 134 SVLQQCYSMYKLFNGTFLKAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISF 193
Query: 657 FPLDKMTYLKIQSFINRMEESLSIVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPR 836
FPLDKMTYLKIQSFINRMEESLS+VKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPR
Sbjct: 194 FPLDKMTYLKIQSFINRMEESLSVVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPR 253
Query: 837 HIEPELAGRDSPIRAEMPGNLQHYGRFLTGPLNLNDPEAKCRFPKIFVNTDDTYEALHLI 1016
HIEPELAGRDSP+RAEMPGNLQHYGRFLTGPLNLNDPEAKCRFPKIFVNTDDTYE LHLI
Sbjct: 254 HIEPELAGRDSPVRAEMPGNLQHYGRFLTGPLNLNDPEAKCRFPKIFVNTDDTYEELHLI 313
Query: 1017 VYKAMSAAVCFMIDASIQPTLDFCRRLDGIVGPQLTVLASDICEQFNVNKRISGSEKEPQ 1196
VYKAMSAAVCFMIDAS TLDFCRRLD IVGPQLTVLASDICEQFN+NKRISGSEKEPQ
Sbjct: 314 VYKAMSAAVCFMIDASTPLTLDFCRRLDSIVGPQLTVLASDICEQFNINKRISGSEKEPQ 373
Query: 1197 FKYIYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTREDEDREVIVKAMS 1376
FK+IYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTR DED E+IVKAMS
Sbjct: 374 FKFIYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTRADEDEEIIVKAMS 433
Query: 1377 DYWGXGRNLXQR 1412
DYW G+ QR
Sbjct: 434 DYWVVGKKSDQR 445
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,845,768
Number of extensions: 995029
Number of successful extensions: 2770
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2768
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 375
Effective length of database: 12,463,779
Effective search space: 4673917125
Effective search space used: 4673917125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003399
(1440 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124329.2| PREDICTED: vacuolar fusion protein CCZ1 homo... 865 0.0
>ref|XP_003124329.2| PREDICTED: vacuolar fusion protein CCZ1 homolog [Sus scrofa].
Length = 482
Score = 865 bits (2236), Expect(2) = 0.0
Identities = 425/432 (98%), Positives = 426/432 (98%)
Frame = +3
Query: 117 QEKQFPPALLSFFIYNPRFGPREGEEENKILFYYPNEVEKNEKIRNVGLCEAIVQFTRTF 296
QEKQFPPALLSFFIYNPRFGPREGEEENKILFYYPNEVEKNEKIRNVGLCEAIVQFTRTF
Sbjct: 16 QEKQFPPALLSFFIYNPRFGPREGEEENKILFYYPNEVEKNEKIRNVGLCEAIVQFTRTF 75
Query: 297 SPSKPAKSLHTQKNRQFFNEPEDNFWMVMVVRNPIIEKQSKDGKPIVEYQEEELLDKVYS 476
SPSKPAKSLHTQKNRQFFNEPEDNFWMVMVVRNPIIEKQSKDGKPIVEYQEEELLDKVYS
Sbjct: 76 SPSKPAKSLHTQKNRQFFNEPEDNFWMVMVVRNPIIEKQSKDGKPIVEYQEEELLDKVYS 135
Query: 477 SVLQQCYSMYKLFNGTFLRAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISF 656
SVLQQCYSMYKLFNGTFLRAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISF
Sbjct: 136 SVLQQCYSMYKLFNGTFLRAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISF 195
Query: 657 FPLDKMTYLKIQSFINRMEESLSIVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPR 836
FPLDKMTYLKIQSFINRMEESLSIVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPR
Sbjct: 196 FPLDKMTYLKIQSFINRMEESLSIVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPR 255
Query: 837 HIEPELAGRDSPIRAEMPGNLQHYGRFLTGPLNLNDPEAKCRFPKIFVNTDDTYEALHLI 1016
HIEPELAGRDSPIRAEMPGNLQHYGRFLTGPLNLNDPEAKCRFPKIFVNTDDTYEALHLI
Sbjct: 256 HIEPELAGRDSPIRAEMPGNLQHYGRFLTGPLNLNDPEAKCRFPKIFVNTDDTYEALHLI 315
Query: 1017 VYKAMSAAVCFMIDASIQPTLDFCRRLDGIVGPQLTVLASDICEQFNVNKRISGSEKEPQ 1196
VYKAMSAAVCFMIDASIQPTLDFCRRLDGIVGPQLTVLASDICEQFNVNKRISGSEKEPQ
Sbjct: 316 VYKAMSAAVCFMIDASIQPTLDFCRRLDGIVGPQLTVLASDICEQFNVNKRISGSEKEPQ 375
Query: 1197 FKYIYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTREDEDREVIVKAMS 1376
FKYIYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTREDED EVIVKAMS
Sbjct: 376 FKYIYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTREDEDEEVIVKAMS 435
Query: 1377 DYWGXGRNLXQR 1412
DYW G+ QR
Sbjct: 436 DYWVVGKKSDQR 447
Score = 24.6 bits (52), Expect(2) = 0.0
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 1394 QKSXSAELYVILNQK 1438
+KS ELYVILNQK
Sbjct: 442 KKSDQRELYVILNQK 456
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,579,785
Number of extensions: 722668
Number of successful extensions: 1979
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1979
Number of HSP's successfully gapped: 2
Length of query: 480
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 377
Effective length of database: 8,779,541
Effective search space: 3309886957
Effective search space used: 3309886957
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003399
(1440 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 345 4e-92
>Sscrofa_Chr03
|| Length = 144787322
Score = 345 bits (174), Expect = 4e-92
Identities = 177/178 (99%)
Strand = Plus / Minus
Query: 593 gtatttgcaaacgttgcatttgcagtcatgtgatctccttgacatttttggcggcatcag 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5284952 gtatttgcaaacgttgcatttgcagtcatgtgatctccttgacatttttggcggcatcag 5284893
Query: 653 cttcttcccattggataaaatgacatatttgaaaatccagtcctttattaatagaatgga 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5284892 cttcttcccattggataaaatgacatatttgaaaatccagtcctttattaatagaatgga 5284833
Query: 713 agaaagcctgagtatagtcaagtacactgcctttctctataacgatcaactcatatgg 770
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5284832 agaaagcctgagtatagtcaagtacactgcctttctctataacgatcaacttatatgg 5284775
Score = 317 bits (160), Expect = 9e-84
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 1177 ggtctgaaaaggagccccagtttaagtacatatacttcaaccacatgaacttagcagaga 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5263766 ggtctgaaaaggagccccagtttaagtacatatacttcaaccacatgaacttagcagaga 5263707
Query: 1237 agagcacgatccacatgaggaaaacgcccagcgtgtcccttacgtctgttcatccggatt 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5263706 agagcacgatccacatgaggaaaacgcccagcgtgtcccttacgtctgttcatccggatt 5263647
Query: 1297 tgatgaagatcctgggcgacatcaacagcgattttaccag 1336
||||||||||||||||||||||||||||||||||||||||
Sbjct: 5263646 tgatgaagatcctgggcgacatcaacagcgattttaccag 5263607
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 1059 gcttctatccagcccacgttggatttttgccgaagactggacggcatcgttgggccgcag 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5269642 gcttctatccagcccacgttggatttttgccgaagactggacggcatcgttgggccgcag 5269583
Query: 1119 ctcacggtgctggcgtctgacatttgcgagcagttcaacgtcaacaaaaggatatctggg 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5269582 ctcacggtgctggcgtctgacatttgcgagcagttcaacgtcaacaaaaggatatctggg 5269523
Query: 1179 t 1179
|
Sbjct: 5269522 t 5269522
Score = 230 bits (116), Expect = 2e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 911 cagatttcttactggacccttgaacctaaatgacccagaagcaaaatgcagattccccaa 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5277170 cagatttcttactggacccttgaacctaaatgacccagaagcaaaatgcagattccccaa 5277111
Query: 971 aatttttgtaaatacagatgacacttacgaagccctgcatttaattgtttataagg 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5277110 aatttttgtaaatacagatgacacttacgaagccctgcatttaattgtttataagg 5277055
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 190 aggaggaaaataaaattctcttctattatccaaatgaagtagaaaagaatgaaaaaatta 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5288262 aggaggaaaataaaattctcttctattatccaaatgaagtagaaaagaatgaaaaaatta 5288203
Query: 250 gaaatgtcggattatgtgaagctattgtccagtttacaagg 290
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 5288202 gaaatgtcggattatgtgaagctattgtccagtttacaagg 5288162
Score = 194 bits (98), Expect = 9e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 288 aggacctttagtccatcaaaacctgcaaaatctttacacacacagaagaacaggcagttc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5288071 aggacctttagtccatcaaaacctgcaaaatctttacacacacagaagaacaggcagttc 5288012
Query: 348 ttcaatgaaccagaagacaatttctggatggtcatggt 385
||||||||||||||||||||||||||||||||||||||
Sbjct: 5288011 ttcaatgaaccagaagacaatttctggatggtcatggt 5287974
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 508 agctttttaatggtacatttctgagagccatggaagacggaggcgtcaagctcctaaaag 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5286335 agctttttaatggtacatttctgagagccatggaagacggaggcgtcaagctcctaaaag 5286276
Query: 568 aaagattagagaaattcttccatcgg 593
||||||||||||||||||||||||||
Sbjct: 5286275 aaagattagagaaattcttccatcgg 5286250
Score = 165 bits (83), Expect = 8e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 769 ggagcggactggagcaagacgacatgagaattctctacaaatacctcaccacatccctct 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5280063 ggagcggactggagcaagacgacatgagaattctctacaaatacctcaccacatccctct 5280004
Query: 829 ttcctcggcacatcgaacccgag 851
|||||||||||||||||||||||
Sbjct: 5280003 ttcctcggcacatcgaacccgag 5279981
Score = 159 bits (80), Expect = 5e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 383 ggttgttcggaatcctataattgagaagcaaagtaaagatggaaaaccgattgttgaata 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5287690 ggttgttcggaatcctataattgagaagcaaagtaaagatggaaaaccgattgttgaata 5287631
Query: 443 ccaagaggaggagttgctgg 462
||||||||||||||||||||
Sbjct: 5287630 ccaagaggaggagttgctgg 5287611
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 117 caggagaagcagttcccgccggcgctgctgagcttcttcatctacaacccgcgcttcggg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5289290 caggagaagcagttcccgccggcgctgctgagcttcttcatctacaacccgcgcttcggg 5289231
Query: 177 ccgcgcgagggagagg 192
||||||||||||||||
Sbjct: 5289230 ccgcgcgagggagagg 5289215
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 850 agttggcgggaagggattctccaattcgggccgagatgccaggaaaccttcagcactatg 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5277757 agttggcgggaagggattctccaattcgggccgagatgccaggaaaccttcagcactatg 5277698
Query: 910 gcag 913
||||
Sbjct: 5277697 gcag 5277694
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 1 gtgcggtctccgcgcggcagctgtctctgggcgggcagagggaggctcccaggaca 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5289406 gtgcggtctccgcgcggcagctgtctctgggcgggcagagggaggctcccaggaca 5289351
Score = 103 bits (52), Expect = 3e-19
Identities = 95/103 (92%), Gaps = 5/103 (4%)
Strand = Plus / Minus
Query: 1334 cagagaggacgaggatcgag-aggtcatcgtgaaagccatgagtgattactggggtgntg 1392
||||||||||||||| |||| ||||||||||||||||||||||||||||||||| || ||
Sbjct: 5263372 cagagaggacgagga-cgaggaggtcatcgtgaaagccatgagtgattactgggttgttg 5263314
Query: 1393 gc-agaaatctgnatcagc-ggagctgtacgttatcttgaatc 1433
|| ||||||||| | |||| |||||||||||||||||||||||
Sbjct: 5263313 gcaagaaatctg-accagcgggagctgtacgttatcttgaatc 5263272
Score = 97.6 bits (49), Expect = 2e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 461 ggacaaggtgtatagttcagtgctccagcagtgctacagcatgtacaag 509
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5287209 ggacaaggtgtatagttcagtgctccagcagtgctacagcatgtacaag 5287161
Score = 71.9 bits (36), Expect = 9e-10
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 1024 aggccatgagtgcggctgtgtgctttatgatcgatg 1059
||||||||||||||||||||||||||||||||||||
Sbjct: 5270272 aggccatgagtgcggctgtgtgctttatgatcgatg 5270237
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,907,963
Number of extensions: 328
Number of successful extensions: 328
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 15
Length of query: 1440
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1419
Effective length of database: 2,808,413,156
Effective search space: 3985138268364
Effective search space used: 3985138268364
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)