Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003400
(1324 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030560.1| adapter protein CIKS [Bos taurus]. 351 9e-97
>ref|NP_001030560.1| adapter protein CIKS [Bos taurus].
Length = 563
Score = 351 bits (900), Expect = 9e-97
Identities = 179/255 (70%), Positives = 193/255 (75%)
Frame = +3
Query: 474 MNRSIPVEVDESEPYPSQLLKPIXXXXXXXXXXPPAPDTRHMAPNSSSAPQTPCYASGDV 653
MNRSIPVEVDESEPYPSQLLKP+ APD R+M PN+ SA T +S D
Sbjct: 1 MNRSIPVEVDESEPYPSQLLKPLSEYSLAEESELAAPDARNMVPNNLSASPTAQSSSRDF 60
Query: 654 AHTHPPLKLSNHQWPVSQQVTCLRTKVLEESEDSFWRRHPDPGKEFPSCSSAASQAEPES 833
H PL+LSN Q PVS +VTCLR KVL ESEDS WRRH DP K+F S S AA + E +S
Sbjct: 61 PQAHLPLQLSNLQQPVSPRVTCLRAKVLAESEDSLWRRHMDPSKDFTSGSCAAGEPETQS 120
Query: 834 VVGALPPEHQFSLMEKRDQWLGSQLSAASPDTGHDSDKSDQSLPNASADPPDSSQEMVQQ 1013
V GALP EHQFS+ EK +QWLGS LSA SPDTGHDSDKSDQS+PNASADP SQEMV
Sbjct: 121 VAGALPQEHQFSITEKHNQWLGSWLSATSPDTGHDSDKSDQSVPNASADPQSGSQEMV-- 178
Query: 1014 PQPHRNRAAPDLPTTDTGYDSQPQDVLGLRQLERPLPLTSACYPQDLPGPLRSREFHLFE 1193
P+P RNRAAPD PT DTGYDSQPQDVLG+RQLERPLPLTS CY QDLP PLRSREFH E
Sbjct: 179 PRPLRNRAAPDPPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYLQDLPRPLRSREFHQCE 238
Query: 1194 PQRYPACVQMLPSHP 1238
PQRYPAC QMLP P
Sbjct: 239 PQRYPACAQMLPPEP 253
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,184,761
Number of extensions: 1623980
Number of successful extensions: 6436
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6398
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 336
Effective length of database: 14,207,134
Effective search space: 4773597024
Effective search space used: 4773597024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003400
(1324 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532266.2| PREDICTED: similar to Adapter protein CIKS (Con... 333 2e-91
>ref|XP_532266.2| PREDICTED: similar to Adapter protein CIKS (Connection to IKK and
SAPK/JNK) (Nuclear factor NF-kappa-B activator 1) (ACT1)
[Canis familiaris].
Length = 452
Score = 333 bits (855), Expect = 2e-91
Identities = 170/255 (66%), Positives = 187/255 (73%)
Frame = +3
Query: 474 MNRSIPVEVDESEPYPSQLLKPIXXXXXXXXXXPPAPDTRHMAPNSSSAPQTPCYASGDV 653
MNRS+PVEVDESEPYPSQ LKPI PPAPD MAP+ SSAP P ++GD
Sbjct: 1 MNRSVPVEVDESEPYPSQSLKPIPGDSLEEESEPPAPDRGDMAPHGSSAPPAPHCSAGDF 60
Query: 654 AHTHPPLKLSNHQWPVSQQVTCLRTKVLEESEDSFWRRHPDPGKEFPSCSSAASQAEPES 833
+ HPPLKLS H PVSQQVTCLRTK+LEE+EDSFWRRHP PGK+ P
Sbjct: 61 SQAHPPLKLSKHLRPVSQQVTCLRTKILEETEDSFWRRHPAPGKDRPFG----------- 109
Query: 834 VVGALPPEHQFSLMEKRDQWLGSQLSAASPDTGHDSDKSDQSLPNASADPPDSSQEMVQQ 1013
VGA PP QFS ME+R++W GSQLSAASPDTGHDSD SD S P+ASA SS + VQ+
Sbjct: 110 -VGASPPGQQFSFMEERNRWPGSQLSAASPDTGHDSDHSDHSCPSASAGAWPSSHDTVQR 168
Query: 1014 PQPHRNRAAPDLPTTDTGYDSQPQDVLGLRQLERPLPLTSACYPQDLPGPLRSREFHLFE 1193
P+P R+ AA D PT DTGYDSQPQDVLG+RQLERPLPLTS CYPQDLPGPLRSREF FE
Sbjct: 169 PRPRRSPAARDPPTVDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPGPLRSREFPQFE 228
Query: 1194 PQRYPACVQMLPSHP 1238
PQRYPAC P HP
Sbjct: 229 PQRYPACG---PDHP 240
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,541,282
Number of extensions: 1667617
Number of successful extensions: 6317
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6278
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 335
Effective length of database: 15,340,888
Effective search space: 5139197480
Effective search space used: 5139197480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003400
(1324 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_679211.2| adapter protein CIKS isoform 2 [Homo sapiens]. 380 e-109
Alignment gi|NP_001157753.1| adapter protein CIKS isoform 3 [Homo sapiens]. 380 e-109
>ref|NP_679211.2| adapter protein CIKS isoform 2 [Homo sapiens].
Length = 565
Score = 380 bits (975), Expect(2) = e-109
Identities = 192/252 (76%), Positives = 204/252 (80%)
Frame = +3
Query: 474 MNRSIPVEVDESEPYPSQLLKPIXXXXXXXXXXPPAPDTRHMAPNSSSAPQTPCYASGDV 653
MNRSIPVEVDESEPYPSQLLKPI PPAP+ R+MAPNS SAP +SGD
Sbjct: 1 MNRSIPVEVDESEPYPSQLLKPIPEYSPEEESEPPAPNIRNMAPNSLSAPTMLHNSSGDF 60
Query: 654 AHTHPPLKLSNHQWPVSQQVTCLRTKVLEESEDSFWRRHPDPGKEFPSCSSAASQAEPES 833
+ H LKL+NHQ PVS+QVTCLRT+VLE+SEDSF RRHP GK FPS SA S+ ES
Sbjct: 61 SQAHSTLKLANHQRPVSRQVTCLRTQVLEDSEDSFCRRHPGLGKAFPSGCSAVSEPASES 120
Query: 834 VVGALPPEHQFSLMEKRDQWLGSQLSAASPDTGHDSDKSDQSLPNASADPPDSSQEMVQQ 1013
VVGALP EHQFS MEKR+QWL SQLSAASPDTGHDSDKSDQSLPNASAD SQEMVQ+
Sbjct: 121 VVGALPAEHQFSFMEKRNQWLVSQLSAASPDTGHDSDKSDQSLPNASADSLGGSQEMVQR 180
Query: 1014 PQPHRNRAAPDLPTTDTGYDSQPQDVLGLRQLERPLPLTSACYPQDLPGPLRSREFHLFE 1193
PQPHRNRA DLPT DTGYDSQPQDVLG+RQLERPLPLTS CYPQDLP PLRSREF FE
Sbjct: 181 PQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPLRSREFPQFE 240
Query: 1194 PQRYPACVQMLP 1229
PQRYPAC QMLP
Sbjct: 241 PQRYPACAQMLP 252
Score = 34.3 bits (77), Expect(2) = e-109
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 1228 PLTLPARSVNYHYYXPGRSEYHVPYGH 1308
P P NYHY+ PG ++ VPYGH
Sbjct: 253 PNLSPHAPWNYHYHCPGSPDHQVPYGH 279
>ref|NP_001157753.1| adapter protein CIKS isoform 3 [Homo sapiens].
Length = 564
Score = 380 bits (975), Expect(2) = e-109
Identities = 192/252 (76%), Positives = 204/252 (80%)
Frame = +3
Query: 474 MNRSIPVEVDESEPYPSQLLKPIXXXXXXXXXXPPAPDTRHMAPNSSSAPQTPCYASGDV 653
MNRSIPVEVDESEPYPSQLLKPI PPAP+ R+MAPNS SAP +SGD
Sbjct: 1 MNRSIPVEVDESEPYPSQLLKPIPEYSPEEESEPPAPNIRNMAPNSLSAPTMLHNSSGDF 60
Query: 654 AHTHPPLKLSNHQWPVSQQVTCLRTKVLEESEDSFWRRHPDPGKEFPSCSSAASQAEPES 833
+ H LKL+NHQ PVS+QVTCLRT+VLE+SEDSF RRHP GK FPS SA S+ ES
Sbjct: 61 SQAHSTLKLANHQRPVSRQVTCLRTQVLEDSEDSFCRRHPGLGKAFPSGCSAVSEPASES 120
Query: 834 VVGALPPEHQFSLMEKRDQWLGSQLSAASPDTGHDSDKSDQSLPNASADPPDSSQEMVQQ 1013
VVGALP EHQFS MEKR+QWL SQLSAASPDTGHDSDKSDQSLPNASAD SQEMVQ+
Sbjct: 121 VVGALPAEHQFSFMEKRNQWLVSQLSAASPDTGHDSDKSDQSLPNASADSLGGSQEMVQR 180
Query: 1014 PQPHRNRAAPDLPTTDTGYDSQPQDVLGLRQLERPLPLTSACYPQDLPGPLRSREFHLFE 1193
PQPHRNRA DLPT DTGYDSQPQDVLG+RQLERPLPLTS CYPQDLP PLRSREF FE
Sbjct: 181 PQPHRNRAGLDLPTIDTGYDSQPQDVLGIRQLERPLPLTSVCYPQDLPRPLRSREFPQFE 240
Query: 1194 PQRYPACVQMLP 1229
PQRYPAC QMLP
Sbjct: 241 PQRYPACAQMLP 252
Score = 34.3 bits (77), Expect(2) = e-109
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 1228 PLTLPARSVNYHYYXPGRSEYHVPYGH 1308
P P NYHY+ PG ++ VPYGH
Sbjct: 253 PNLSPHAPWNYHYHCPGSPDHQVPYGH 279
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,428,745
Number of extensions: 1646327
Number of successful extensions: 6553
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6494
Number of HSP's successfully gapped: 4
Length of query: 441
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 335
Effective length of database: 14,802,980
Effective search space: 4958998300
Effective search space used: 4958998300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003400
(1324 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598761.2| adapter protein CIKS [Mus musculus]. 332 3e-91
>ref|NP_598761.2| adapter protein CIKS [Mus musculus].
Length = 555
Score = 332 bits (852), Expect = 3e-91
Identities = 176/260 (67%), Positives = 199/260 (76%), Gaps = 5/260 (1%)
Frame = +3
Query: 474 MNRSIPVEVDESEPYPSQLLKPIXXXXXXXXXXPPAPDTRHMAPNSSSAPQTPCYASGDV 653
MNRSIPVEVDESEP+PSQLLKPI PPAP+TR+MAP+S S Q P
Sbjct: 1 MNRSIPVEVDESEPFPSQLLKPIPEYSPEEELEPPAPNTRNMAPSSLSVLQCP------- 53
Query: 654 AHTHPPLKLSNHQWPVSQQVTCLRTKVLEESEDSFWRRHPDPGKEFPSCSSAASQAEPES 833
PLKL+NHQ PVSQQVTCLR KVLEE E SF+RRHP+ GK+ SCSS AS EPES
Sbjct: 54 -----PLKLANHQ-PVSQQVTCLRAKVLEEGEASFFRRHPELGKDISSCSSGAS--EPES 105
Query: 834 VVGALPPEHQFSLMEKRDQWLGSQLSAASPDTGHDSDKSDQSLPNASADPPDSSQEMVQQ 1013
+GALPPEH+F+L EKR++WLGSQLSAASPDTGH+SDKSD SLPNA AD QEM+ +
Sbjct: 106 ELGALPPEHRFTLTEKRNRWLGSQLSAASPDTGHESDKSDPSLPNALADSFSGGQEMMPR 165
Query: 1014 PQP----HRNRAAPDLPTTDTGYDSQPQDVLGLRQLERPLPLTSACYPQDLPGPLRSREF 1181
P+P HR+RAAPD+PT DTGYDSQPQDVLG+RQLERPLPLTS+CY QDLPGPLRSRE
Sbjct: 166 PRPRPGPHRHRAAPDVPTIDTGYDSQPQDVLGIRQLERPLPLTSSCYLQDLPGPLRSREL 225
Query: 1182 -HLFEPQRYPACVQMLPSHP 1238
FE +RYP Q+LP HP
Sbjct: 226 PPQFELERYPMNAQLLPPHP 245
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,666,984
Number of extensions: 1373958
Number of successful extensions: 5461
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5417
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 337
Effective length of database: 12,493,815
Effective search space: 4210415655
Effective search space used: 4210415655
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003400
(1324 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001924822.2| PREDICTED: adapter protein CIKS isoform 1 [S... 505 e-148
>ref|XP_001924822.2| PREDICTED: adapter protein CIKS isoform 1 [Sus scrofa].
Length = 565
Score = 505 bits (1300), Expect(2) = e-148
Identities = 242/255 (94%), Positives = 243/255 (95%)
Frame = +3
Query: 474 MNRSIPVEVDESEPYPSQLLKPIXXXXXXXXXXPPAPDTRHMAPNSSSAPQTPCYASGDV 653
MNRSIPVEVDESEPYPSQLLKPI PPAPDTRHMAPNSSSAPQTPCYASGDV
Sbjct: 1 MNRSIPVEVDESEPYPSQLLKPISEHSLEEESEPPAPDTRHMAPNSSSAPQTPCYASGDV 60
Query: 654 AHTHPPLKLSNHQWPVSQQVTCLRTKVLEESEDSFWRRHPDPGKEFPSCSSAASQAEPES 833
AHTH PLKLSNHQWPVSQQVTCLRTKVLEESEDSFWRRHPDPGKEFPSCSSAASQAEPES
Sbjct: 61 AHTHSPLKLSNHQWPVSQQVTCLRTKVLEESEDSFWRRHPDPGKEFPSCSSAASQAEPES 120
Query: 834 VVGALPPEHQFSLMEKRDQWLGSQLSAASPDTGHDSDKSDQSLPNASADPPDSSQEMVQQ 1013
VVGALPPEHQFSLMEKRDQWLGSQLSAASPDTGHDSDKSDQSLPNASADPPDSSQEMVQQ
Sbjct: 121 VVGALPPEHQFSLMEKRDQWLGSQLSAASPDTGHDSDKSDQSLPNASADPPDSSQEMVQQ 180
Query: 1014 PQPHRNRAAPDLPTTDTGYDSQPQDVLGLRQLERPLPLTSACYPQDLPGPLRSREFHLFE 1193
PQPHRNRAAPDLPTTDTGYDSQPQDVLGLRQLERPLPLTSACYPQDLPGPLRSREFHLFE
Sbjct: 181 PQPHRNRAAPDLPTTDTGYDSQPQDVLGLRQLERPLPLTSACYPQDLPGPLRSREFHLFE 240
Query: 1194 PQRYPACVQMLPSHP 1238
PQRYPACVQMLP +P
Sbjct: 241 PQRYPACVQMLPLNP 255
Score = 40.8 bits (94), Expect(2) = e-148
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +1
Query: 1240 PARSVNYHYYXPGRSEYHVPYGH 1308
P NYHYY PG +YHVPYGH
Sbjct: 257 PHAQWNYHYYGPGGPDYHVPYGH 279
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,642,780
Number of extensions: 1049301
Number of successful extensions: 4264
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4235
Number of HSP's successfully gapped: 2
Length of query: 441
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 339
Effective length of database: 8,804,438
Effective search space: 2984704482
Effective search space used: 2984704482
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003400
(1324 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1548 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 1548 bits (781), Expect = 0.0
Identities = 829/840 (98%), Gaps = 4/840 (0%)
Strand = Plus / Minus
Query: 464 agaaactagaatgaatcgaagcattcctgtggaggttgatgaatctgaaccatacccaag 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87084702 agaaactagaatgaatcgaagcattcctgtggaggttgatgaatctgaaccatacccaag 87084643
Query: 524 tcagttgctgaaacccatctcagagcattccctggaagaggaatcagaaccgcctgctcc 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87084642 tcagttgctgaaacccatctcagagcattccctggaagaggaatcagaaccgcctgctcc 87084583
Query: 584 agataccagacacatggcacccaacagctcctctgcaccccaaaccccttgctatgcctc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87084582 agataccagacacatggcacccaacagctcctctgcaccccaaaccccttgctatgcctc 87084523
Query: 644 aggagacgtggctcacactcacccacccctgaagctttcaaatcatcagtggcctgtgtc 703
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 87084522 aggagacgtggctcacactcactcacccctgaagctttcaaatcatcagtggcctgtgtc 87084463
Query: 704 ccagcaggtcacctgcctgcgcaccaaagtcctggaggagagtgaagacagcttctggag 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87084462 ccagcaggtcacctgcctgcgcaccaaagtcctggaggagagtgaagacagcttctggag 87084403
Query: 764 gagacacccagacccgggcaaagagtttccctcgtgctcctccgcagccagccaggctga 823
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87084402 gagacacccagacccaggcaaagagtttccctcgtgctcctccgcagccagccaggctga 87084343
Query: 824 gcctgagtctgtggttggagctctccccccagagcatcagttttcacttatggaaaaacg 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87084342 gcctgagtctgtggttggagctctccccccagagcatcagttttcacttatggaaaaacg 87084283
Query: 884 tgatcaatggctgggatctcagctttcagcagcttctcccgacactggccatgactcaga 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87084282 tgatcaatggctgggatctcagctttcagcagcttctcccgacactggccatgactcaga 87084223
Query: 944 caaatcagaccagagtttacctaatgcctcagcagaccctccggacagtagccaagagat 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87084222 caaatcagaccagagtttacctaatgcctcagcagaccctccggacagtagccaagagat 87084163
Query: 1004 ggtgcaacagcctcagccccacaggaaccgagcagccccagacctgcctaccacagacac 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87084162 ggtgcaacagcctcagccccacaggaaccgagcagccccagacctgcctaccacagacac 87084103
Query: 1064 tgggtacgattcccagccccaggacgtcctgggcctcaggcagctggaaagacccctgcc 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87084102 tgggtacgattcccagccccaggacgtcctgggcctcaggcagctggaaagacccctgcc 87084043
Query: 1124 cctcacctccgcctgttacccccaggacctccccgggcctctcagatctagggagttcca 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87084042 cctcacctccgcctgttacccccaggacctccccgggcctctcagatctagggagttcca 87083983
Query: 1184 tctgtttgaacctcagagatacccagcgtgcgtacagatgctgccctctc-accctt-cc 1241
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||
Sbjct: 87083982 tctgtttgaacctcagagatacccagcgtgcgtacagatgctg-cctctcaacccttccc 87083924
Query: 1242 cgcacgctcagt-gaactatcactactatgntcctggaaggtctgaataccacgtgccat 1300
|||||||||||| ||||||||||||||||| ||||||| | |||| |||||||||||||
Sbjct: 87083923 cgcacgctcagtggaactatcactactatggtcctggaggtcctgattaccacgtgccat 87083864
Score = 856 bits (432), Expect = 0.0
Identities = 454/465 (97%)
Strand = Plus / Minus
Query: 1 tttcctcctctggtgctgctggtgaataatcaacccatcttaacacccaacttcaccgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87102278 tttcctcctctggtgctgctggtgaataatcaacccatcttaacacccaacttcaccgcc 87102219
Query: 61 ctccccaggcaccgtctctggccaggctgctgtgacaacgctcaggtccagggcagtggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87102218 ctccccaggcaccgtctctggccaggctgctgtgacaacgctcaggtccagggcagtggg 87102159
Query: 121 gacattcctcagcacttatttagctgggtggtgnnnnnnnnnnngcagtctaattggcca 180
||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 87102158 gacattcctcagcacttatttagctgggtggtgaaaaaaaaaaagcagtctaattggcca 87102099
Query: 181 gtggccttttctagtgaatgaaggaggtttcgtttttaagaaataaagtgacttctcagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87102098 gtggccttttctagtgaatgaaggaggtttcgtttttaagaaataaagtgacttctcagc 87102039
Query: 241 ggctgttgattcactgcccacagggagatttttggagcggaggcttcctagccagggtag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87102038 ggctgttgattcactgcccacagggagatttttggagcggaggcttcctagccagggtag 87101979
Query: 301 aaatttgcatacaacttccacttcctgcttcggagcctgttgggcggcttacctgggcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87101978 aaatttgcatacaacttccacttcctgcttcggagcctgttgggcggcttacctgggcct 87101919
Query: 361 ggagagggtggagggagcctgggagcgacccaaggtggagcgacccaaggagaagcaagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87101918 ggagagggtggagggagcctgggagcgacccaaggtggagcgacccaaggagaagcaagc 87101859
Query: 421 gtgaccaccctgtgccctggtctgtctgtcctcggtggctctaag 465
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87101858 gtgaccaccctgtgccctggtctgtctgtcctcggtggctctaag 87101814
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,540,842
Number of extensions: 290
Number of successful extensions: 290
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 289
Number of HSP's successfully gapped: 3
Length of query: 1324
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1303
Effective length of database: 2,808,413,156
Effective search space: 3659362342268
Effective search space used: 3659362342268
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)