Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003401
(988 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071514.1| phosphatidate cytidylyltransferase 2 [Bos ta... 419 e-129
>ref|NP_001071514.1| phosphatidate cytidylyltransferase 2 [Bos taurus].
Length = 445
Score = 419 bits (1077), Expect(2) = e-129
Identities = 201/209 (96%), Positives = 204/209 (97%)
Frame = +2
Query: 254 MTELRQRMVHDPDAPPEDKELESEAKVDGETASDSESRVEAVTQPTSADDTPEVLNRALS 433
MTELRQR+ +P+APPEDKE ESEAK DGETASDSESRVEAVTQP SADDTPEVLNRALS
Sbjct: 1 MTELRQRVAREPEAPPEDKESESEAKADGETASDSESRVEAVTQPPSADDTPEVLNRALS 60
Query: 434 NLSSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLMMIVMCVQIKCFHEIITIGYNVYHSY 613
NLSSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLMMIVMCVQIKCFHEIITIGYNVYHSY
Sbjct: 61 NLSSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLMMIVMCVQIKCFHEIITIGYNVYHSY 120
Query: 614 DLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLTGFCM 793
DLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLTGFCM
Sbjct: 121 DLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLTGFCM 180
Query: 794 FVLSLVKKHYRLQFYMFGWTHVTLLIVVT 880
FVLSLVKKHYRLQFYMFGWTHVTLLIVVT
Sbjct: 181 FVLSLVKKHYRLQFYMFGWTHVTLLIVVT 209
Score = 61.6 bits (148), Expect(2) = e-129
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = +1
Query: 880 QSHLVIHNLVEGMIWFIVPISCVICNDI 963
QSHLVIHNL EGMIWFIVPISCVICNDI
Sbjct: 210 QSHLVIHNLFEGMIWFIVPISCVICNDI 237
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,480,642
Number of extensions: 1110004
Number of successful extensions: 5875
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5775
Number of HSP's successfully gapped: 2
Length of query: 329
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 226
Effective length of database: 14,273,310
Effective search space: 3225768060
Effective search space used: 3225768060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003401
(988 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542903.2| PREDICTED: similar to phosphatidate cytidylyltr... 373 e-115
Alignment gi|XP_544962.2| PREDICTED: similar to phosphatidate cytidylyltr... 288 2e-87
>ref|XP_542903.2| PREDICTED: similar to phosphatidate cytidylyltransferase 2 [Canis
familiaris].
Length = 454
Score = 373 bits (957), Expect(2) = e-115
Identities = 181/200 (90%), Positives = 183/200 (91%)
Frame = +2
Query: 281 HDPDAPPEDKELESEAKVDGETASDSESRVEAVTQPTSADDTPEVLNRALSNLSSRWKNW 460
H A E E+EAKVDGETASDSESR EA S DDTPEVLNRALSNLSSRWKNW
Sbjct: 19 HTTPAEALTLESETEAKVDGETASDSESRAEAAPLSASTDDTPEVLNRALSNLSSRWKNW 78
Query: 461 WVRGILTLAMIAFFFIIIYLGPMVLMMIVMCVQIKCFHEIITIGYNVYHSYDLPWFRTLS 640
WVRGILTLAMIAFFFIIIYLGPMVLM+IVMCVQIKCFHEIITIGYNVYHSYDLPWFRTLS
Sbjct: 79 WVRGILTLAMIAFFFIIIYLGPMVLMIIVMCVQIKCFHEIITIGYNVYHSYDLPWFRTLS 138
Query: 641 WYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLTGFCMFVLSLVKKH 820
WYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYL GFCMFVLSLVKKH
Sbjct: 139 WYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLIGFCMFVLSLVKKH 198
Query: 821 YRLQFYMFGWTHVTLLIVVT 880
YRLQFYMFGWTHVTLLIVVT
Sbjct: 199 YRLQFYMFGWTHVTLLIVVT 218
Score = 61.6 bits (148), Expect(2) = e-115
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = +1
Query: 880 QSHLVIHNLVEGMIWFIVPISCVICNDI 963
QSHLVIHNL EGMIWFIVPISCVICNDI
Sbjct: 219 QSHLVIHNLFEGMIWFIVPISCVICNDI 246
>ref|XP_544962.2| PREDICTED: similar to phosphatidate cytidylyltransferase 1 [Canis
familiaris].
Length = 461
Score = 288 bits (736), Expect(2) = 2e-87
Identities = 135/192 (70%), Positives = 157/192 (81%)
Frame = +2
Query: 305 DKELESEAKVDGETASDSESRVEAVTQPTSADDTPEVLNRALSNLSSRWKNWWVRGILTL 484
DKE + + + G+ S +S + + P S+D TPE+L +ALS LSSRWKNWW+RGILTL
Sbjct: 38 DKETDIDDRY-GDLDSRPDSDIPEI--PPSSDRTPEILKKALSGLSSRWKNWWIRGILTL 94
Query: 485 AMIAFFFIIIYLGPMVLMMIVMCVQIKCFHEIITIGYNVYHSYDLPWFRTLSWYFLLCVN 664
MI+ FF+IIY+G +LM++V+ +Q+KCFHEIITIGY VY SYDLPWFRTLSWYFLLCVN
Sbjct: 95 TMISLFFLIIYMGSFMLMLLVLGIQVKCFHEIITIGYRVYRSYDLPWFRTLSWYFLLCVN 154
Query: 665 YFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLTGFCMFVLSLVKKHYRLQFYMF 844
YFFYGETV DYF T VQREE L+ L +YHRFISF LYL GFCMFVLSLVKKHYRLQFYMF
Sbjct: 155 YFFYGETVADYFATFVQREEQLQFLIRYHRFISFALYLAGFCMFVLSLVKKHYRLQFYMF 214
Query: 845 GWTHVTLLIVVT 880
WTHVTLLI VT
Sbjct: 215 AWTHVTLLITVT 226
Score = 53.9 bits (128), Expect(2) = 2e-87
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = +1
Query: 880 QSHLVIHNLVEGMIWFIVPISCVICNDI 963
QSHLVI NL EGMIWF+VPIS VICNDI
Sbjct: 227 QSHLVIQNLFEGMIWFLVPISSVICNDI 254
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,004,453
Number of extensions: 1143383
Number of successful extensions: 5951
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5889
Number of HSP's successfully gapped: 4
Length of query: 329
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 226
Effective length of database: 15,440,896
Effective search space: 3489642496
Effective search space used: 3489642496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003401
(988 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003809.1| phosphatidate cytidylyltransferase 2 [Homo sapi... 409 e-126
Alignment gi|NP_001254.2| phosphatidate cytidylyltransferase 1 [Homo sapi... 291 2e-88
>ref|NP_003809.1| phosphatidate cytidylyltransferase 2 [Homo sapiens].
Length = 445
Score = 409 bits (1051), Expect(2) = e-126
Identities = 196/209 (93%), Positives = 200/209 (95%)
Frame = +2
Query: 254 MTELRQRMVHDPDAPPEDKELESEAKVDGETASDSESRVEAVTQPTSADDTPEVLNRALS 433
MTELRQR+ H+P APPEDKE ESEAKVDGETASDSESR E+ P SADDTPEVLNRALS
Sbjct: 1 MTELRQRVAHEPVAPPEDKESESEAKVDGETASDSESRAESAPLPVSADDTPEVLNRALS 60
Query: 434 NLSSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLMMIVMCVQIKCFHEIITIGYNVYHSY 613
NLSSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLM+IVMCVQIKCFHEIITIGYNVYHSY
Sbjct: 61 NLSSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLMIIVMCVQIKCFHEIITIGYNVYHSY 120
Query: 614 DLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLTGFCM 793
DLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYL GFCM
Sbjct: 121 DLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLIGFCM 180
Query: 794 FVLSLVKKHYRLQFYMFGWTHVTLLIVVT 880
FVLSLVKKHYRLQFYMFGWTHVTLLIVVT
Sbjct: 181 FVLSLVKKHYRLQFYMFGWTHVTLLIVVT 209
Score = 61.6 bits (148), Expect(2) = e-126
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = +1
Query: 880 QSHLVIHNLVEGMIWFIVPISCVICNDI 963
QSHLVIHNL EGMIWFIVPISCVICNDI
Sbjct: 210 QSHLVIHNLFEGMIWFIVPISCVICNDI 237
>ref|NP_001254.2| phosphatidate cytidylyltransferase 1 [Homo sapiens].
Length = 461
Score = 291 bits (746), Expect(2) = 2e-88
Identities = 136/192 (70%), Positives = 159/192 (82%)
Frame = +2
Query: 305 DKELESEAKVDGETASDSESRVEAVTQPTSADDTPEVLNRALSNLSSRWKNWWVRGILTL 484
DKE + + + G+ S ++S + + P S+D TPE+L +ALS LSSRWKNWW+RGILTL
Sbjct: 38 DKETDIDDRY-GDLDSRTDSDIPEI--PPSSDRTPEILKKALSGLSSRWKNWWIRGILTL 94
Query: 485 AMIAFFFIIIYLGPMVLMMIVMCVQIKCFHEIITIGYNVYHSYDLPWFRTLSWYFLLCVN 664
MI+ FF+IIY+G +LM++V+ +Q+KCFHEIITIGY VYHSYDLPWFRTLSWYFLLCVN
Sbjct: 95 TMISLFFLIIYMGSFMLMLLVLGIQVKCFHEIITIGYRVYHSYDLPWFRTLSWYFLLCVN 154
Query: 665 YFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLTGFCMFVLSLVKKHYRLQFYMF 844
YFFYGETV DYF T VQREE L+ L +YHRFISF LYL GFCMFVLSLVKKHYRLQFYMF
Sbjct: 155 YFFYGETVADYFATFVQREEQLQFLIRYHRFISFALYLAGFCMFVLSLVKKHYRLQFYMF 214
Query: 845 GWTHVTLLIVVT 880
WTHVTLLI VT
Sbjct: 215 AWTHVTLLITVT 226
Score = 53.9 bits (128), Expect(2) = 2e-88
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = +1
Query: 880 QSHLVIHNLVEGMIWFIVPISCVICNDI 963
QSHLVI NL EGMIWF+VPIS VICNDI
Sbjct: 227 QSHLVIQNLFEGMIWFLVPISSVICNDI 254
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,248,984
Number of extensions: 1116270
Number of successful extensions: 5263
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5228
Number of HSP's successfully gapped: 4
Length of query: 329
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 226
Effective length of database: 14,901,872
Effective search space: 3367823072
Effective search space used: 3367823072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003401
(988 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_619592.1| phosphatidate cytidylyltransferase 2 [Mus muscu... 404 e-125
Alignment gi|NP_775546.2| phosphatidate cytidylyltransferase 1 [Mus muscu... 291 1e-88
>ref|NP_619592.1| phosphatidate cytidylyltransferase 2 [Mus musculus].
Length = 444
Score = 404 bits (1039), Expect(2) = e-125
Identities = 196/209 (93%), Positives = 199/209 (95%)
Frame = +2
Query: 254 MTELRQRMVHDPDAPPEDKELESEAKVDGETASDSESRVEAVTQPTSADDTPEVLNRALS 433
MTELRQR+V + DAPPEDKE ESEAK+DGETASDSESR E PTS DDTPEVLNRALS
Sbjct: 1 MTELRQRVVRE-DAPPEDKESESEAKLDGETASDSESRAETAPLPTSVDDTPEVLNRALS 59
Query: 434 NLSSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLMMIVMCVQIKCFHEIITIGYNVYHSY 613
NLSSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLMMIVMCVQIKCFHEIITIGYNVYHSY
Sbjct: 60 NLSSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLMMIVMCVQIKCFHEIITIGYNVYHSY 119
Query: 614 DLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLTGFCM 793
DLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISF LYLTGFCM
Sbjct: 120 DLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFALYLTGFCM 179
Query: 794 FVLSLVKKHYRLQFYMFGWTHVTLLIVVT 880
FVLSLVKKHYRLQFYMFGWTHVTLLIVVT
Sbjct: 180 FVLSLVKKHYRLQFYMFGWTHVTLLIVVT 208
Score = 61.6 bits (148), Expect(2) = e-125
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = +1
Query: 880 QSHLVIHNLVEGMIWFIVPISCVICNDI 963
QSHLVIHNL EGMIWFIVPISCVICNDI
Sbjct: 209 QSHLVIHNLFEGMIWFIVPISCVICNDI 236
>ref|NP_775546.2| phosphatidate cytidylyltransferase 1 [Mus musculus].
Length = 461
Score = 291 bits (746), Expect(2) = 1e-88
Identities = 140/227 (61%), Positives = 165/227 (72%)
Frame = +2
Query: 200 GPSGCGTRSRRPSTGVSSMTELRQRMVHDPDAPPEDKELESEAKVDGETASDSESRVEAV 379
GP G G P G ++ + D + +D+ + +A+ D +
Sbjct: 12 GPGGAGAPP--PREGEAAGGDHETESTSDKETDIDDRYGDLDARGDSDVPE--------- 60
Query: 380 TQPTSADDTPEVLNRALSNLSSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLMMIVMCVQ 559
P S+D TPE+L +ALS LSSRWKNWW+RGILTL MI+ FF+IIY+G +LM++V+ +Q
Sbjct: 61 -VPPSSDRTPEILKKALSGLSSRWKNWWIRGILTLTMISLFFLIIYMGSFMLMLLVLGIQ 119
Query: 560 IKCFHEIITIGYNVYHSYDLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRIL 739
+KCFHEIITIGY VYHSYDLPWFRTLSWYFLLCVNYFFYGETV DYF T VQREE L+ L
Sbjct: 120 VKCFHEIITIGYRVYHSYDLPWFRTLSWYFLLCVNYFFYGETVADYFATFVQREEQLQFL 179
Query: 740 SKYHRFISFTLYLTGFCMFVLSLVKKHYRLQFYMFGWTHVTLLIVVT 880
+YHRFISF LYL GFCMFVLSLVKKHYRLQFYMF WTHVTLLI VT
Sbjct: 180 IRYHRFISFALYLAGFCMFVLSLVKKHYRLQFYMFAWTHVTLLITVT 226
Score = 53.9 bits (128), Expect(2) = 1e-88
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = +1
Query: 880 QSHLVIHNLVEGMIWFIVPISCVICNDI 963
QSHLVI NL EGMIWF+VPIS VICNDI
Sbjct: 227 QSHLVIQNLFEGMIWFLVPISSVICNDI 254
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,153,276
Number of extensions: 925956
Number of successful extensions: 4097
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4049
Number of HSP's successfully gapped: 4
Length of query: 329
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 227
Effective length of database: 12,553,887
Effective search space: 2849732349
Effective search space used: 2849732349
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003401
(988 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001160145.1| phosphatidate cytidylyltransferase 2 [Sus sc... 434 e-134
Alignment gi|NP_001037999.1| phosphatidate cytidylyltransferase 1 [Sus sc... 287 2e-87
>ref|NP_001160145.1| phosphatidate cytidylyltransferase 2 [Sus scrofa].
Length = 445
Score = 434 bits (1117), Expect(2) = e-134
Identities = 209/209 (100%), Positives = 209/209 (100%)
Frame = +2
Query: 254 MTELRQRMVHDPDAPPEDKELESEAKVDGETASDSESRVEAVTQPTSADDTPEVLNRALS 433
MTELRQRMVHDPDAPPEDKELESEAKVDGETASDSESRVEAVTQPTSADDTPEVLNRALS
Sbjct: 1 MTELRQRMVHDPDAPPEDKELESEAKVDGETASDSESRVEAVTQPTSADDTPEVLNRALS 60
Query: 434 NLSSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLMMIVMCVQIKCFHEIITIGYNVYHSY 613
NLSSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLMMIVMCVQIKCFHEIITIGYNVYHSY
Sbjct: 61 NLSSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLMMIVMCVQIKCFHEIITIGYNVYHSY 120
Query: 614 DLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLTGFCM 793
DLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLTGFCM
Sbjct: 121 DLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLTGFCM 180
Query: 794 FVLSLVKKHYRLQFYMFGWTHVTLLIVVT 880
FVLSLVKKHYRLQFYMFGWTHVTLLIVVT
Sbjct: 181 FVLSLVKKHYRLQFYMFGWTHVTLLIVVT 209
Score = 61.6 bits (148), Expect(2) = e-134
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = +1
Query: 880 QSHLVIHNLVEGMIWFIVPISCVICNDI 963
QSHLVIHNL EGMIWFIVPISCVICNDI
Sbjct: 210 QSHLVIHNLFEGMIWFIVPISCVICNDI 237
>ref|NP_001037999.1| phosphatidate cytidylyltransferase 1 [Sus scrofa].
Length = 461
Score = 287 bits (735), Expect(2) = 2e-87
Identities = 139/207 (67%), Positives = 160/207 (77%), Gaps = 12/207 (5%)
Frame = +2
Query: 296 PPEDKEL-----ESEAKVDGETASDS-----ESRVEAVTQ--PTSADDTPEVLNRALSNL 439
PP + E E+E+ D ET D + R ++ P S+D TPE+L RALS L
Sbjct: 20 PPREGEAAGGDHETESTSDKETDIDDRYGDLDPRTDSDIPDIPPSSDRTPEILKRALSGL 79
Query: 440 SSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLMMIVMCVQIKCFHEIITIGYNVYHSYDL 619
SSRWKNWW+RGILTL MI+ FF++IY+G +LM++V+ +Q+KCFHEIITIGY VY SYDL
Sbjct: 80 SSRWKNWWIRGILTLTMISLFFLVIYMGSFMLMLLVLGIQVKCFHEIITIGYRVYRSYDL 139
Query: 620 PWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLTGFCMFV 799
PWFRTLSWYFLLCVNYFFYGETV DYF T VQREE L+ L +YHRFISF LYL GFCMFV
Sbjct: 140 PWFRTLSWYFLLCVNYFFYGETVADYFATFVQREEQLQFLIRYHRFISFALYLAGFCMFV 199
Query: 800 LSLVKKHYRLQFYMFGWTHVTLLIVVT 880
LSLVKKHYRLQFYMF WTHVTLLI VT
Sbjct: 200 LSLVKKHYRLQFYMFAWTHVTLLITVT 226
Score = 53.9 bits (128), Expect(2) = 2e-87
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = +1
Query: 880 QSHLVIHNLVEGMIWFIVPISCVICNDI 963
QSHLVI NL EGMIWF+VPIS VICNDI
Sbjct: 227 QSHLVIQNLFEGMIWFLVPISSVICNDI 254
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,802,195
Number of extensions: 717062
Number of successful extensions: 3679
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3627
Number of HSP's successfully gapped: 4
Length of query: 329
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 230
Effective length of database: 8,879,129
Effective search space: 2042199670
Effective search space used: 2042199670
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003401
(988 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 609 e-171
>Sscrofa_Chr17
|| Length = 69701581
Score = 609 bits (307), Expect = e-171
Identities = 310/311 (99%)
Strand = Plus / Plus
Query: 1 ggttccggggccctcccgagagaaggagctagcgggccagggctgaggaggctgattgcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15141784 ggttccggggccctcccgagagaaggagctagcgggccagggctgaggaggctgattgcg 15141843
Query: 61 ctcagcccgggtgaaagggcggctgcagcaccgggcggggccgagttccaggactgcagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15141844 ctcagcccgggtgaaagggcggctgcagcaccgggcggggccgagttccaggactgcagg 15141903
Query: 121 ccgggctgccgtggggcctgggagccgctgcggagccgcgcgctgctcagccgaggcggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15141904 ccgggctgccgtggggcctgggagccgctgcggagccgcgcgctgctcagccgaggcggg 15141963
Query: 181 gctggagcgctgagctgccggccccagcggctgcggtactcgctcgcggcgacctagcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15141964 gctggagcgctgagctgccggccccagcggctgcggtactcgctcgcggcgacctagcac 15142023
Query: 241 cggtgtctccagcatgacggaactaaggcagaggatggtccacgacccggacgcaccgcc 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 15142024 cggtgtctccagcatgacggaactaaggcagagggtggtccacgacccggacgcaccgcc 15142083
Query: 301 cgaggacaagg 311
|||||||||||
Sbjct: 15142084 cgaggacaagg 15142094
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 642 ggtactttctactgtgtgtaaattatttcttctatggtgaaacagtgacagattacttct 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15191245 ggtactttctactgtgtgtaaattatttcttctatggtgaaacagtgacagattacttct 15191304
Query: 702 tcaccctagtccagagagaggagcctttgcggattctcagtaaataccaccgattcatct 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15191305 tcaccctagtccagagagaggagcctttgcggattctcagtaaataccaccgattcatct 15191364
Query: 762 cctttaccctttatctaacagg 783
||||||||||||||||||||||
Sbjct: 15191365 cctttaccctttatctaacagg 15191386
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 309 aggagttggagtcagaagcaaaggtcgatggagagactgcatccgacagtgagagccgag 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15185051 aggagttggagtcagaagcaaaggtcgatggagagactgcatccgacagtgagagccgag 15185110
Query: 369 tggaagctgtcacccaaccaacttctgcagacgacaccccagaggtcctcaaccgggccc 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15185111 tggaagctgtcacccaaccaacttctgcagacgacaccccagaggtcctcaaccgggccc 15185170
Query: 429 tttccaacttgtcttcaag 447
|||||||||||||||||||
Sbjct: 15185171 tttccaacttgtcttcaag 15185189
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 446 agatggaagaactggtgggtgagaggcatcctgactttggccatgattgcatttttcttc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15187170 agatggaagaactggtgggtgagaggcatcctgactttggccatgattgcatttttcttc 15187229
Query: 506 atcatcatttacctgggaccaatggttttaatgatgattgt 546
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 15187230 atcatcatttacctgggaccaatggttttaatgatgattgt 15187270
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 545 gtgatgtgtgttcagattaagtgtttccatgagattatcaccatcggctacaatgtctac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15188026 gtgatgtgtgttcagattaagtgtttccatgagattatcaccatcggctacaatgtctac 15188085
Query: 605 cactcctatgacctgccctggttcagaacgctcagctggta 645
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 15188086 cactcctatgacctgccctggttcagaacgctcagctggta 15188126
Score = 139 bits (70), Expect = 3e-30
Identities = 83/86 (96%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 841 gtttggctggacccatgtaacattactgattgttgtaa-ccagtcccatctcgttatcca 899
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 15193866 gtttggctggacccatgtaacattactgattgttgtaacccagtcgcatctcgttatcca 15193925
Query: 900 caacctggttgaaggcatgatctggt 925
||||||| ||||||||||||||||||
Sbjct: 15193926 caacctgtttgaaggcatgatctggt 15193951
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 781 aggattctgcatgtttgtgctgagtctggtcaagaagcattatcgactgcaattttacat 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15192704 aggattctgcatgtttgtgctgagtctggtcaagaagcattatcgactgcaattttacat 15192763
Query: 841 g 841
|
Sbjct: 15192764 g 15192764
Score = 111 bits (56), Expect = 7e-22
Identities = 65/67 (97%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 923 ggttcatcgtccccatctcttgtgtgatctgtaatgacatca-ggnctatatgtttggct 981
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 15197429 ggttcatcgtccccatctcttgtgtgatctgtaatgacatcatggcctatatgtttggct 15197488
Query: 982 tcttttt 988
|||||||
Sbjct: 15197489 tcttttt 15197495
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,847,115
Number of extensions: 176
Number of successful extensions: 176
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 8
Length of query: 988
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 967
Effective length of database: 2,808,413,156
Effective search space: 2715735521852
Effective search space used: 2715735521852
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)