Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003409
(1014 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029891.1| ubiquitin thioesterase OTUB1 [Bos taurus]. 516 e-147
Alignment gi|NP_001015517.1| ubiquitin thioesterase OTUB2 [Bos taurus]. 221 8e-58
>ref|NP_001029891.1| ubiquitin thioesterase OTUB1 [Bos taurus].
Length = 271
Score = 516 bits (1330), Expect = e-147
Identities = 258/271 (95%), Positives = 260/271 (95%)
Frame = +3
Query: 21 MAAXXXXXXXXXXLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKE 200
MAA LGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKE
Sbjct: 1 MAAEEPQQQKQEPLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKE 60
Query: 201 YAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAK 380
YAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAK
Sbjct: 61 YAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAK 120
Query: 381 SKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTS 560
SKEDLVSQGFTEFTIEDFHNTFMDLIEQVEK+T VADLLASFNDQSTSDYLVVYLRLLTS
Sbjct: 121 SKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKRTPVADLLASFNDQSTSDYLVVYLRLLTS 180
Query: 561 GYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGE 740
GYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGE
Sbjct: 181 GYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGE 240
Query: 741 GGTTNPHIFPEGSEPKVYLLYRPGHYDILYK 833
GGTTNPH+FPEGSEPKVYLLYRPGHYDILYK
Sbjct: 241 GGTTNPHVFPEGSEPKVYLLYRPGHYDILYK 271
>ref|NP_001015517.1| ubiquitin thioesterase OTUB2 [Bos taurus].
Length = 234
Score = 221 bits (563), Expect = 8e-58
Identities = 108/224 (48%), Positives = 156/224 (69%)
Frame = +3
Query: 159 LVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLD 338
L+SE+ ++ + +++ E+ IYQ+KI++L K+++ IRKT+ DGNCFYRA G+S+LE+LL
Sbjct: 8 LISEKCDILSILRDHPEN-RIYQRKIQELSKRFTAIRKTKGDGNCFYRALGYSYLESLLG 66
Query: 339 DSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQS 518
S+E+ +FK ++ DL+ GF E T +F N F ++E VEK SV+ LL FNDQS
Sbjct: 67 KSREILKFKERVLQTPNDLLVAGFEEHTFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQS 126
Query: 519 TSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQA 698
SD +V +LRLLTS ++ + FF HFI+ +K+FC EVEPM E DHI I AL+QA
Sbjct: 127 FSDRIVQFLRLLTSAFIMNRADFFRHFIDEEMDIKDFCAHEVEPMAMECDHIQITALSQA 186
Query: 699 LSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILY 830
L++++QVEY+D + N H+FPE + P VYLLY+ HY+ILY
Sbjct: 187 LNIALQVEYVDEMD-TALNHHVFPEAATPSVYLLYKTSHYNILY 229
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,869,655
Number of extensions: 869511
Number of successful extensions: 3914
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3903
Number of HSP's successfully gapped: 2
Length of query: 338
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,273,310
Effective search space: 3354227850
Effective search space used: 3354227850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003409
(1014 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533248.2| PREDICTED: similar to Ubiquitin thiolesterase p... 528 e-150
Alignment gi|XP_853366.1| PREDICTED: similar to OTU domain, ubiquitin ald... 485 e-137
Alignment gi|XP_867231.1| PREDICTED: similar to OTU domain, ubiquitin ald... 263 2e-70
Alignment gi|XP_537541.2| PREDICTED: similar to OTU domain, ubiquitin ald... 221 9e-58
>ref|XP_533248.2| PREDICTED: similar to Ubiquitin thiolesterase protein OTUB1
(Otubain 1) (OTU domain-containing ubiquitin
aldehyde-binding protein 1) (Ubiquitin-specific
processing protease OTUB1) (Deubiquitinating enzyme
OTUB1) [Canis familiaris].
Length = 279
Score = 528 bits (1361), Expect = e-150
Identities = 265/276 (96%), Positives = 265/276 (96%)
Frame = +3
Query: 6 RRCLKMAAXXXXXXXXXXLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELS 185
R CLKMAA LGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELS
Sbjct: 4 RGCLKMAAEEPQQQKQEPLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELS 63
Query: 186 VLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFK 365
VLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFK
Sbjct: 64 VLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFK 123
Query: 366 AVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYL 545
AVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYL
Sbjct: 124 AVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYL 183
Query: 546 RLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEY 725
RLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEY
Sbjct: 184 RLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEY 243
Query: 726 MDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILYK 833
MDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILYK
Sbjct: 244 MDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILYK 279
>ref|XP_853366.1| PREDICTED: similar to OTU domain, ubiquitin aldehyde binding 1
isoform 1 [Canis familiaris].
Length = 241
Score = 485 bits (1249), Expect = e-137
Identities = 241/241 (100%), Positives = 241/241 (100%)
Frame = +3
Query: 111 MAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGN 290
MAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGN
Sbjct: 1 MAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGN 60
Query: 291 CFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVE 470
CFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVE
Sbjct: 61 CFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVE 120
Query: 471 KQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEP 650
KQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEP
Sbjct: 121 KQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEP 180
Query: 651 MCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILY 830
MCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILY
Sbjct: 181 MCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILY 240
Query: 831 K 833
K
Sbjct: 241 K 241
>ref|XP_867231.1| PREDICTED: similar to OTU domain, ubiquitin aldehyde binding 1
isoform 2 [Canis familiaris].
Length = 129
Score = 263 bits (672), Expect = 2e-70
Identities = 129/129 (100%), Positives = 129/129 (100%)
Frame = +3
Query: 447 MDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKE 626
MDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKE
Sbjct: 1 MDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKE 60
Query: 627 FCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYR 806
FCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYR
Sbjct: 61 FCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYR 120
Query: 807 PGHYDILYK 833
PGHYDILYK
Sbjct: 121 PGHYDILYK 129
>ref|XP_537541.2| PREDICTED: similar to OTU domain, ubiquitin aldehyde binding 2
[Canis familiaris].
Length = 349
Score = 221 bits (563), Expect = 9e-58
Identities = 107/224 (47%), Positives = 158/224 (70%)
Frame = +3
Query: 159 LVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLD 338
L+SE+ ++ + +++ E+ IYQ+KI++L K+++ IRKT+ DGNCFYRA G+S+LE+LL
Sbjct: 123 LISEKCDILSILRDHPEN-RIYQRKIQELSKRFTGIRKTKGDGNCFYRALGYSYLESLLG 181
Query: 339 DSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQS 518
S+E+ +FK ++ DL++ GF E +F N F ++E VEK SV+ LL FNDQS
Sbjct: 182 KSREVLKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQS 241
Query: 519 TSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQA 698
+SD +V +LRLLTS +++ + FF HFI+ +K+FC EVEPM E DHI I AL+QA
Sbjct: 242 SSDQIVQFLRLLTSAFIKNRADFFRHFIDEEMDIKDFCTHEVEPMAMECDHIQITALSQA 301
Query: 699 LSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILY 830
L++++QVEY+D + N H+FPE + P VYLLY+ HY+ILY
Sbjct: 302 LNIALQVEYVDEMD-TALNHHVFPEAATPSVYLLYKTSHYNILY 344
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,321,468
Number of extensions: 898207
Number of successful extensions: 4195
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4182
Number of HSP's successfully gapped: 4
Length of query: 338
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 235
Effective length of database: 15,440,896
Effective search space: 3628610560
Effective search space used: 3628610560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003409
(1014 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060140.2| ubiquitin thioesterase OTUB1 [Homo sapiens]. 520 e-148
Alignment gi|NP_075601.1| ubiquitin thioesterase OTUB2 [Homo sapiens]. 222 5e-58
>ref|NP_060140.2| ubiquitin thioesterase OTUB1 [Homo sapiens].
Length = 271
Score = 520 bits (1340), Expect = e-148
Identities = 261/271 (96%), Positives = 261/271 (96%)
Frame = +3
Query: 21 MAAXXXXXXXXXXLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKE 200
MAA LGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKE
Sbjct: 1 MAAEEPQQQKQEPLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKE 60
Query: 201 YAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAK 380
YAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAK
Sbjct: 61 YAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAK 120
Query: 381 SKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTS 560
SKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTS
Sbjct: 121 SKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTS 180
Query: 561 GYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGE 740
GYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGE
Sbjct: 181 GYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGE 240
Query: 741 GGTTNPHIFPEGSEPKVYLLYRPGHYDILYK 833
GGTTNPHIFPEGSEPKVYLLYRPGHYDILYK
Sbjct: 241 GGTTNPHIFPEGSEPKVYLLYRPGHYDILYK 271
>ref|NP_075601.1| ubiquitin thioesterase OTUB2 [Homo sapiens].
Length = 234
Score = 222 bits (565), Expect = 5e-58
Identities = 107/224 (47%), Positives = 158/224 (70%)
Frame = +3
Query: 159 LVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLD 338
L+SE+ ++ + +++ E+ IY++KI++L K+++ IRKT+ DGNCFYRA G+S+LE+LL
Sbjct: 8 LISEKCDILSILRDHPEN-RIYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSYLESLLG 66
Query: 339 DSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQS 518
S+E+ +FK ++ DL++ GF E +F N F ++E VEK SV+ LL FNDQS
Sbjct: 67 KSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQS 126
Query: 519 TSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQA 698
SD++V +LRLLTS +++ + FF HFI+ +K+FC EVEPM E DHI I AL+QA
Sbjct: 127 ASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQA 186
Query: 699 LSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILY 830
LS+++QVEY+D + N H+FPE + P VYLLY+ HY+ILY
Sbjct: 187 LSIALQVEYVDEMD-TALNHHVFPEAATPSVYLLYKTSHYNILY 229
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,570,481
Number of extensions: 873430
Number of successful extensions: 3833
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3822
Number of HSP's successfully gapped: 2
Length of query: 338
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,901,872
Effective search space: 3501939920
Effective search space used: 3501939920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003409
(1014 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598911.1| ubiquitin thioesterase OTUB1 [Mus musculus]. 520 e-148
Alignment gi|NP_001171312.1| ubiquitin thioesterase OTUB2 isoform 1 [Mus ... 221 5e-58
Alignment gi|NP_080856.1| ubiquitin thioesterase OTUB2 isoform 2 [Mus mus... 221 5e-58
>ref|NP_598911.1| ubiquitin thioesterase OTUB1 [Mus musculus].
Length = 271
Score = 520 bits (1339), Expect = e-148
Identities = 260/271 (95%), Positives = 261/271 (96%)
Frame = +3
Query: 21 MAAXXXXXXXXXXLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKE 200
MAA LGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKE
Sbjct: 1 MAAEEPQQQKQEPLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKE 60
Query: 201 YAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAK 380
YAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAK
Sbjct: 61 YAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAK 120
Query: 381 SKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTS 560
SKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTS
Sbjct: 121 SKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTS 180
Query: 561 GYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGE 740
GYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGE
Sbjct: 181 GYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGE 240
Query: 741 GGTTNPHIFPEGSEPKVYLLYRPGHYDILYK 833
GGTTNPH+FPEGSEPKVYLLYRPGHYDILYK
Sbjct: 241 GGTTNPHVFPEGSEPKVYLLYRPGHYDILYK 271
>ref|NP_001171312.1| ubiquitin thioesterase OTUB2 isoform 1 [Mus musculus].
Length = 323
Score = 221 bits (564), Expect = 5e-58
Identities = 106/224 (47%), Positives = 159/224 (70%)
Frame = +3
Query: 159 LVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLD 338
L+SE+ ++ + +++ E+ IYQ+KI++L K+++ IRKT+ DGNCFYRA G+S+LE+LL
Sbjct: 97 LISEKCDILSILRDHPEN-RIYQRKIQELSKRFTSIRKTKGDGNCFYRALGYSYLESLLG 155
Query: 339 DSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQS 518
S+E+ +FK ++ DL++ GF E +F N F ++E VEK +SV+ LL FNDQS
Sbjct: 156 KSREILKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDSSVSSLLKVFNDQS 215
Query: 519 TSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQA 698
+SD +V +LRLLTS +++ + FF HFI+ +K+FC EVEPM E DH+ I AL+QA
Sbjct: 216 SSDRIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMAMECDHVQITALSQA 275
Query: 699 LSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILY 830
L++++QVEY+D + N H+FPE + P VYLLY+ HY+ILY
Sbjct: 276 LNIALQVEYVDEMD-TALNHHVFPEAAIPSVYLLYKTSHYNILY 318
>ref|NP_080856.1| ubiquitin thioesterase OTUB2 isoform 2 [Mus musculus].
Length = 234
Score = 221 bits (564), Expect = 5e-58
Identities = 106/224 (47%), Positives = 159/224 (70%)
Frame = +3
Query: 159 LVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLD 338
L+SE+ ++ + +++ E+ IYQ+KI++L K+++ IRKT+ DGNCFYRA G+S+LE+LL
Sbjct: 8 LISEKCDILSILRDHPEN-RIYQRKIQELSKRFTSIRKTKGDGNCFYRALGYSYLESLLG 66
Query: 339 DSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQS 518
S+E+ +FK ++ DL++ GF E +F N F ++E VEK +SV+ LL FNDQS
Sbjct: 67 KSREILKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDSSVSSLLKVFNDQS 126
Query: 519 TSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQA 698
+SD +V +LRLLTS +++ + FF HFI+ +K+FC EVEPM E DH+ I AL+QA
Sbjct: 127 SSDRIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMAMECDHVQITALSQA 186
Query: 699 LSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILY 830
L++++QVEY+D + N H+FPE + P VYLLY+ HY+ILY
Sbjct: 187 LNIALQVEYVDEMD-TALNHHVFPEAAIPSVYLLYKTSHYNILY 229
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,110,299
Number of extensions: 723824
Number of successful extensions: 3071
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3064
Number of HSP's successfully gapped: 3
Length of query: 338
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 236
Effective length of database: 12,553,887
Effective search space: 2962717332
Effective search space used: 2962717332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003409
(1014 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001155875.1| ubiquitin thioesterase OTUB1 [Sus scrofa]. 520 e-148
Alignment gi|XP_001925403.1| PREDICTED: ubiquitin thioesterase OTUB2-like... 220 8e-58
>ref|NP_001155875.1| ubiquitin thioesterase OTUB1 [Sus scrofa].
Length = 271
Score = 520 bits (1340), Expect = e-148
Identities = 261/271 (96%), Positives = 261/271 (96%)
Frame = +3
Query: 21 MAAXXXXXXXXXXLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKE 200
MAA LGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKE
Sbjct: 1 MAAEEPQQQKQEPLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKE 60
Query: 201 YAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAK 380
YAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAK
Sbjct: 61 YAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAK 120
Query: 381 SKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTS 560
SKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTS
Sbjct: 121 SKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTS 180
Query: 561 GYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGE 740
GYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGE
Sbjct: 181 GYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGE 240
Query: 741 GGTTNPHIFPEGSEPKVYLLYRPGHYDILYK 833
GGTTNPHIFPEGSEPKVYLLYRPGHYDILYK
Sbjct: 241 GGTTNPHIFPEGSEPKVYLLYRPGHYDILYK 271
>ref|XP_001925403.1| PREDICTED: ubiquitin thioesterase OTUB2-like [Sus scrofa].
Length = 234
Score = 220 bits (561), Expect = 8e-58
Identities = 106/224 (47%), Positives = 159/224 (70%)
Frame = +3
Query: 159 LVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLD 338
L+SE+ ++ + +++ E+ IYQ+KI++L K+++ IRKT+ DGNCFYRA G+S+LE+LL
Sbjct: 8 LISEKCDILSILRDHPEN-RIYQRKIQELSKRFTAIRKTKGDGNCFYRALGYSYLESLLG 66
Query: 339 DSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQS 518
S+E+ +FK ++ DL++ GF E ++F N F ++E VEK SV+ LL FNDQS
Sbjct: 67 KSREILKFKERVLQTPNDLLAAGFEEHKFQNFFNAFYSVVELVEKDGSVSSLLKVFNDQS 126
Query: 519 TSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQA 698
+SD +V +LRLLTS +++ + FF HFI+ +++FC EVEPM E DHI I AL+QA
Sbjct: 127 SSDRIVQFLRLLTSAFIRNRADFFRHFIDEEMDIRDFCTHEVEPMAMECDHIQITALSQA 186
Query: 699 LSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILY 830
L++++QVEY+D + N H+FPE + P VYLLY+ HY+ILY
Sbjct: 187 LNIALQVEYVDEMD-TALNHHVFPEAAIPSVYLLYKTSHYNILY 229
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,879,444
Number of extensions: 562620
Number of successful extensions: 2495
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2487
Number of HSP's successfully gapped: 2
Length of query: 338
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 238
Effective length of database: 8,854,232
Effective search space: 2107307216
Effective search space used: 2107307216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003409
(1014 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 549 e-153
Sscrofa_Chr03 145 5e-32
>Sscrofa_Chr02
|| Length = 162569375
Score = 549 bits (277), Expect = e-153
Identities = 346/365 (94%), Gaps = 5/365 (1%)
Strand = Plus / Minus
Query: 635 gcaggaggtggagcccatgtgcaaggagagcgaccacatccacatcatcgcgctggccca 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7205773 gcaggaggtggagcccatgtgcaaggagagcgaccacatccacatcatcgcgctggccca 7205714
Query: 695 ggcgctcagcgtctccatccaggtggagtacatggaccgcggcgagggcggcaccaccaa 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7205713 ggcgctcagcgtctccatccaggtggagtacatggaccgcggcgagggcggcaccaccaa 7205654
Query: 755 cccccacatcttccccgagggctccgagcccaaggtctaccttctctaccggcctggaca 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7205653 cccccacatcttccccgagggctccgagcccaaggtctaccttctctaccggcctggaca 7205594
Query: 815 ctacgacatcctctacaaatagggctggccccgggcttgcgccgccctgcctgccctccc 874
|||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct: 7205593 ctacgacatcctctacaaatagggctgg-cccggcctgccgccgccctgcctgccctccc 7205535
Query: 875 ctctgccaggcactagacatgtacagaggnnnnnnnnngtggttgtaaatggtcgtactt 934
||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7205534 ctctgccaggcactagacatgtacagagg-ttttttttgtggttgtaaatggtcgtactt 7205476
Query: 935 caccccccacgcccttccctgtaaaacgacc-tccatggttttatt-aaggggacgctgt 992
|||||||||||||||||||||| | |||||| ||||| |||||||| ||||||||||||
Sbjct: 7205475 caccccccacgcccttccctgtcacacgaccttccat-gttttattaaaggggacgctgg 7205417
Query: 993 tggtg 997
|||||
Sbjct: 7205416 tggtg 7205412
Score = 391 bits (197), Expect = e-106
Identities = 197/197 (100%)
Strand = Plus / Minus
Query: 443 gttcatggacctaatcgagcaggtggagaagcagacctcagtggccgacctgctggcctc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7206096 gttcatggacctaatcgagcaggtggagaagcagacctcagtggccgacctgctggcctc 7206037
Query: 503 cttcaacgaccagagcacctcggactacctggtggtctacctgcggctgctcacctcggg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7206036 cttcaacgaccagagcacctcggactacctggtggtctacctgcggctgctcacctcggg 7205977
Query: 563 ctacctgcagcgcgagagcaagttcttcgagcacttcatcgagggtgggcggaccgtcaa 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7205976 ctacctgcagcgcgagagcaagttcttcgagcacttcatcgagggtgggcggaccgtcaa 7205917
Query: 623 ggagttctgccagcagg 639
|||||||||||||||||
Sbjct: 7205916 ggagttctgccagcagg 7205900
Score = 244 bits (123), Expect = 8e-62
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 238 aggacctccacaaaaagtactcgtacatccgcaagaccaggcctgatggaaactgcttct 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7206586 aggacctccacaaaaagtactcgtacatccgcaagaccaggcctgatggaaactgcttct 7206527
Query: 298 atcgtgctttcggtttctcccacttggaggcgttgctggatgacagcaaggagctgcagc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7206526 atcgtgctttcggtttctcccacttggaggcgttgctggatgacagcaaggagctgcagc 7206467
Query: 358 ggt 360
|||
Sbjct: 7206466 ggt 7206464
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 139 agattgctgtgcagaaccctctggtctcggagcgactggagctctccgtcctgtacaaag 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7210225 agattgctgtgcagaaccctctggtctcggagcgactggagctctccgtcctgtacaaag 7210166
Query: 199 agtatgccgaggacgacaacatctatcaacagaagatcaagg 240
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7210165 agtatgccgaggacgacaacatctatcaacagaagatcaagg 7210124
Score = 170 bits (86), Expect = 9e-40
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 358 ggttcaaggctgtgtctgccaagagcaaagaggacctggtgtcccagggcttcaccgaat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7206277 ggttcaaggctgtgtctgccaagagcaaagaggacctggtgtcccagggcttcaccgaat 7206218
Query: 418 tcacaattgaggatttccacaacacg 443
||||||||||||||||||||||||||
Sbjct: 7206217 tcacaattgaggatttccacaacacg 7206192
Score = 157 bits (79), Expect = 1e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 2 agtgcggcgctgtttaaagatggcggcggaggaacctcagcagcagaagcaggagccgct 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7212450 agtgcggcgctgtttaaagatggcggcggaggaacctcagcagcagaagcaggagccgct 7212391
Query: 62 gggcagcgactctgaaggt 80
|||||||||||||||||||
Sbjct: 7212390 gggcagcgactctgaaggt 7212372
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 77 aggtgttaactgtcttgcctatgatgaagccatcatggctcagcaggaccgaattcagca 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7210530 aggtgttaactgtcttgcctatgatgaagccatcatggctcagcaggaccgaattcagca 7210471
Query: 137 agag 140
||||
Sbjct: 7210470 agag 7210467
>Sscrofa_Chr03
|| Length = 144787322
Score = 145 bits (73), Expect = 5e-32
Identities = 155/181 (85%), Gaps = 1/181 (0%)
Strand = Plus / Plus
Query: 79 gtgttaactgtcttgcctatgatgaagccatcatggctcagcaggaccgaattcagcaag 138
||||||| |||||| || |||||||| |||||||||||||||||| ||||||||||
Sbjct: 86155455 gtgttaattgtcttatctgtgatgaagttatcatggctcagcaggactagattcagcaag 86155514
Query: 139 agattgctgtgcagaaccctctggtctcggagcgactggagctctccgtcctgtacaaag 198
| |||||||||||| ||||||||||| |||| ||||||||||| ||||||||||||
Sbjct: 86155515 caactgctgtgcagaatcctctggtctctgagcagctggagctctcattcctgtacaaag 86155574
Query: 199 agtatgccgaggacgacaacatctatcaacagaagatcaaggacctccacaaaaagtact 258
|||||| ||||| |||||||||||||| || |||| |||||||||| | ||||||||||
Sbjct: 86155575 tgtatgctgaggatgacaacatctatcagcataaga-caaggacctctataaaaagtact 86155633
Query: 259 c 259
|
Sbjct: 86155634 c 86155634
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,777,148
Number of extensions: 597
Number of successful extensions: 597
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 596
Number of HSP's successfully gapped: 9
Length of query: 1014
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 993
Effective length of database: 2,808,413,156
Effective search space: 2788754263908
Effective search space used: 2788754263908
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)