Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003411
(991 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032533.1| structure-specific endonuclease subunit SLX1... 275 4e-74
>ref|NP_001032533.1| structure-specific endonuclease subunit SLX1 [Bos taurus].
Length = 267
Score = 275 bits (703), Expect = 4e-74
Identities = 139/206 (67%), Positives = 147/206 (71%)
Frame = +2
Query: 368 YLLYCLNPRHRGRVYVGFTVNPARREQQHNAGRKKGGAWRTSGRGPWEMVLIVHGFPSAV 547
YLLYCLNPRHRGRVYVGFTVNPARR QQHN GRKKGGAWRTSGRGPWEMVLIVHGFPSAV
Sbjct: 10 YLLYCLNPRHRGRVYVGFTVNPARRVQQHNGGRKKGGAWRTSGRGPWEMVLIVHGFPSAV 69
Query: 548 AALRFEWAWQHPKASRRLAHLGPRLRGEAAFAFHLRVLAHMLRVPPWARLPLTLRWLRTD 727
AALRFEWAWQHP+ASRRL H+G RLRGEA FAFHLRVLAHMLR PPW RLPLTLRWLR D
Sbjct: 70 AALRFEWAWQHPQASRRLTHVGRRLRGEATFAFHLRVLAHMLRAPPWVRLPLTLRWLRAD 129
Query: 728 FRQDLCXXXXXXXXXXXXXXXXRALARKCGAVPLASMESESQPQHAAEALCTVCACALQD 907
FRQDLC RA + A P M E PQ + CT+CA ALQD
Sbjct: 130 FRQDLCPPPPPHMPLAFGPPPPRAPPPRSQAGPSDDMGFE--PQQDVDVRCTLCARALQD 187
Query: 908 EEGXXXXXXXXXXXSSRNVICLGKRF 985
EE + +VICL + F
Sbjct: 188 EESPLCCPHPGCSLRA-HVICLAEEF 212
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,771,581
Number of extensions: 1279584
Number of successful extensions: 6670
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6614
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,273,310
Effective search space: 3240041370
Effective search space used: 3240041370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003411
(991 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849594.1| PREDICTED: similar to GIY-YIG domain containing... 276 2e-74
Alignment gi|XP_859133.1| PREDICTED: similar to GIY-YIG domain containing... 137 1e-32
>ref|XP_849594.1| PREDICTED: similar to GIY-YIG domain containing 2 isoform 1 isoform
1 [Canis familiaris].
Length = 272
Score = 276 bits (707), Expect = 2e-74
Identities = 136/206 (66%), Positives = 151/206 (73%)
Frame = +2
Query: 368 YLLYCLNPRHRGRVYVGFTVNPARREQQHNAGRKKGGAWRTSGRGPWEMVLIVHGFPSAV 547
YLLYCLNPRHRGRVYVGFTVNPARR QQHN GRKKGGAWRTSGRGPWEMVLIVHGFPSAV
Sbjct: 17 YLLYCLNPRHRGRVYVGFTVNPARRVQQHNGGRKKGGAWRTSGRGPWEMVLIVHGFPSAV 76
Query: 548 AALRFEWAWQHPKASRRLAHLGPRLRGEAAFAFHLRVLAHMLRVPPWARLPLTLRWLRTD 727
AALRFEWAWQHP+ASRRLAH+GPRLR EAAFAFHLRVLAHMLR PPWARLPLT+RWLR D
Sbjct: 77 AALRFEWAWQHPRASRRLAHVGPRLRSEAAFAFHLRVLAHMLRAPPWARLPLTVRWLRAD 136
Query: 728 FRQDLCXXXXXXXXXXXXXXXXRALARKCGAVPLASMESESQPQHAAEALCTVCACALQD 907
FR++LC RA R+ G S + E + A+A C +CA + QD
Sbjct: 137 FRRELCPPPPPHMPLAFGPPPPRARERRAG----PSADPEPERDRDADASCALCARSFQD 192
Query: 908 EEGXXXXXXXXXXXSSRNVICLGKRF 985
EEG + ++ICL + F
Sbjct: 193 EEGPLCCPHSGCRLRA-HMICLAEEF 217
>ref|XP_859133.1| PREDICTED: similar to GIY-YIG domain containing 2 isoform 2 isoform
2 [Canis familiaris].
Length = 161
Score = 137 bits (346), Expect = 1e-32
Identities = 76/113 (67%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Frame = +2
Query: 368 YLLYCLNPRHRGRVYVGFTVNPARREQQHNAGRKKGGAWRTSGRGPWEMVLIVHGFPSAV 547
YLLYCLNPRHRGRVYVGFTVNPARR QQHN GRKKGGAWRTSGRGPWEMVLIVHGFPSAV
Sbjct: 17 YLLYCLNPRHRGRVYVGFTVNPARRVQQHNGGRKKGGAWRTSGRGPWEMVLIVHGFPSAV 76
Query: 548 AALRFEWAWQHPKASRRLAHLGPRLRGEAAFAFHLRVLA-HMLRVPPWARLPL 703
AALR E + H G RLR H+ LA L+ P LPL
Sbjct: 77 AALRDE------EGPLCCPHSGCRLRA------HMICLAEEFLQEEPGQLLPL 117
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,329,772
Number of extensions: 1313373
Number of successful extensions: 7146
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7028
Number of HSP's successfully gapped: 2
Length of query: 330
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 227
Effective length of database: 15,440,896
Effective search space: 3505083392
Effective search space used: 3505083392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003411
(991 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014999.1| structure-specific endonuclease subunit SLX1... 266 2e-71
Alignment gi|NP_076949.1| structure-specific endonuclease subunit SLX1 is... 266 2e-71
Alignment gi|NP_001015000.1| structure-specific endonuclease subunit SLX1... 129 3e-30
Alignment gi|NP_835145.1| structure-specific endonuclease subunit SLX1 is... 129 3e-30
>ref|NP_001014999.1| structure-specific endonuclease subunit SLX1 isoform 1 [Homo
sapiens].
Length = 275
Score = 266 bits (680), Expect = 2e-71
Identities = 134/206 (65%), Positives = 147/206 (71%)
Frame = +2
Query: 368 YLLYCLNPRHRGRVYVGFTVNPARREQQHNAGRKKGGAWRTSGRGPWEMVLIVHGFPSAV 547
YLLYCLNPR+RGRVYVGFTVN ARR QQHN GRKKGGAWRTSGRGPWEMVL+VHGFPS+V
Sbjct: 17 YLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGRGPWEMVLVVHGFPSSV 76
Query: 548 AALRFEWAWQHPKASRRLAHLGPRLRGEAAFAFHLRVLAHMLRVPPWARLPLTLRWLRTD 727
AALRFEWAWQHP ASRRLAH+GPRLRGE AFAFHLRVLAHMLR PPWARLPLTLRW+R D
Sbjct: 77 AALRFEWAWQHPHASRRLAHVGPRLRGETAFAFHLRVLAHMLRAPPWARLPLTLRWVRPD 136
Query: 728 FRQDLCXXXXXXXXXXXXXXXXRALARKCGAVPLASMESESQPQHAAEALCTVCACALQD 907
RQDLC +A A + A P E E Q A C++CA +QD
Sbjct: 137 LRQDLCLPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPD-QGDPGACCSLCAQTIQD 195
Query: 908 EEGXXXXXXXXXXXSSRNVICLGKRF 985
EEG + +VICL + F
Sbjct: 196 EEGPLCCPHPGCLLRA-HVICLAEEF 220
>ref|NP_076949.1| structure-specific endonuclease subunit SLX1 isoform 1 [Homo
sapiens].
Length = 275
Score = 266 bits (680), Expect = 2e-71
Identities = 134/206 (65%), Positives = 147/206 (71%)
Frame = +2
Query: 368 YLLYCLNPRHRGRVYVGFTVNPARREQQHNAGRKKGGAWRTSGRGPWEMVLIVHGFPSAV 547
YLLYCLNPR+RGRVYVGFTVN ARR QQHN GRKKGGAWRTSGRGPWEMVL+VHGFPS+V
Sbjct: 17 YLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGRGPWEMVLVVHGFPSSV 76
Query: 548 AALRFEWAWQHPKASRRLAHLGPRLRGEAAFAFHLRVLAHMLRVPPWARLPLTLRWLRTD 727
AALRFEWAWQHP ASRRLAH+GPRLRGE AFAFHLRVLAHMLR PPWARLPLTLRW+R D
Sbjct: 77 AALRFEWAWQHPHASRRLAHVGPRLRGETAFAFHLRVLAHMLRAPPWARLPLTLRWVRPD 136
Query: 728 FRQDLCXXXXXXXXXXXXXXXXRALARKCGAVPLASMESESQPQHAAEALCTVCACALQD 907
RQDLC +A A + A P E E Q A C++CA +QD
Sbjct: 137 LRQDLCLPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPD-QGDPGACCSLCAQTIQD 195
Query: 908 EEGXXXXXXXXXXXSSRNVICLGKRF 985
EEG + +VICL + F
Sbjct: 196 EEGPLCCPHPGCLLRA-HVICLAEEF 220
>ref|NP_001015000.1| structure-specific endonuclease subunit SLX1 isoform 2 [Homo
sapiens].
Length = 161
Score = 129 bits (325), Expect = 3e-30
Identities = 59/66 (89%), Positives = 62/66 (93%)
Frame = +2
Query: 368 YLLYCLNPRHRGRVYVGFTVNPARREQQHNAGRKKGGAWRTSGRGPWEMVLIVHGFPSAV 547
YLLYCLNPR+RGRVYVGFTVN ARR QQHN GRKKGGAWRTSGRGPWEMVL+VHGFPS+V
Sbjct: 17 YLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGRGPWEMVLVVHGFPSSV 76
Query: 548 AALRFE 565
AALR E
Sbjct: 77 AALRDE 82
>ref|NP_835145.1| structure-specific endonuclease subunit SLX1 isoform 2 [Homo
sapiens].
Length = 161
Score = 129 bits (325), Expect = 3e-30
Identities = 59/66 (89%), Positives = 62/66 (93%)
Frame = +2
Query: 368 YLLYCLNPRHRGRVYVGFTVNPARREQQHNAGRKKGGAWRTSGRGPWEMVLIVHGFPSAV 547
YLLYCLNPR+RGRVYVGFTVN ARR QQHN GRKKGGAWRTSGRGPWEMVL+VHGFPS+V
Sbjct: 17 YLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGRGPWEMVLVVHGFPSSV 76
Query: 548 AALRFE 565
AALR E
Sbjct: 77 AALRDE 82
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,301,410
Number of extensions: 1265348
Number of successful extensions: 6175
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6128
Number of HSP's successfully gapped: 4
Length of query: 330
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,901,872
Effective search space: 3382724944
Effective search space used: 3382724944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003411
(991 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083696.2| structure-specific endonuclease subunit SLX1 [M... 270 1e-72
>ref|NP_083696.2| structure-specific endonuclease subunit SLX1 [Mus musculus].
Length = 270
Score = 270 bits (690), Expect = 1e-72
Identities = 134/206 (65%), Positives = 150/206 (72%)
Frame = +2
Query: 368 YLLYCLNPRHRGRVYVGFTVNPARREQQHNAGRKKGGAWRTSGRGPWEMVLIVHGFPSAV 547
YLLYC NPRHRGRVYVGFTVNPARR +QHNAGRKKGGAWRTSGRGPW+MVLI+HGFPSAV
Sbjct: 14 YLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLIIHGFPSAV 73
Query: 548 AALRFEWAWQHPKASRRLAHLGPRLRGEAAFAFHLRVLAHMLRVPPWARLPLTLRWLRTD 727
AALRFEWAWQHP+ASRRL H+GPRLR EAAFAFHLRVLAHMLRVPPW RLPLTLRWLR D
Sbjct: 74 AALRFEWAWQHPQASRRLTHVGPRLRSEAAFAFHLRVLAHMLRVPPWVRLPLTLRWLRPD 133
Query: 728 FRQDLCXXXXXXXXXXXXXXXXRALARKCGAVPLASMESESQPQHAAEALCTVCACALQD 907
FR +LC + L K AV + +SE Q +A C++CA LQD
Sbjct: 134 FRHELCPAPPAHMPIAFGPPPPQPLVPKRPAV--SEADSERQLDLGTKARCSLCARLLQD 191
Query: 908 EEGXXXXXXXXXXXSSRNVICLGKRF 985
EEG + ++ICL + F
Sbjct: 192 EEGPLCCPHPGCPLRA-HIICLAEEF 216
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,694,108
Number of extensions: 1036096
Number of successful extensions: 4683
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4655
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 228
Effective length of database: 12,553,887
Effective search space: 2862286236
Effective search space used: 2862286236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003411
(991 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360882.1| PREDICTED: LOW QUALITY PROTEIN: structure-sp... 126 2e-29
>ref|XP_003360882.1| PREDICTED: LOW QUALITY PROTEIN: structure-specific endonuclease
subunit SLX1-like, partial [Sus scrofa].
Length = 141
Score = 126 bits (317), Expect = 2e-29
Identities = 65/84 (77%), Positives = 66/84 (78%), Gaps = 3/84 (3%)
Frame = +2
Query: 368 YLLYCLNPRHRGRVYVGFTVNPARREQQHNAGRKKGGAWRTSGRGPWEMVLIVHGFPSAV 547
YLLYCLNPRHRGRVYVGFTVNPARREQQHNA AWRTSGRGPWEMVLIVHGFPSAV
Sbjct: 7 YLLYCLNPRHRGRVYVGFTVNPARREQQHNAXXXXXXAWRTSGRGPWEMVLIVHGFPSAV 66
Query: 548 AALRFE---WAWQHPKASRRLAHL 610
AALR E HP S R AH+
Sbjct: 67 AALRDEEGPLCCPHPGCSLR-AHV 89
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,400,393
Number of extensions: 829508
Number of successful extensions: 4443
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4416
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,879,129
Effective search space: 2051078799
Effective search space used: 2051078799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003411
(991 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892962.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 222 3e-55
>gb|GL892962.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1775
Length = 17377
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 349 cgggcgcttcttcggcgtctacctgctctactgcctgaaccctcgacaccgaggtcgcgt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9591 cgggcgcttcttcggcgtctacctgctctactgcctgaaccctcgacaccgaggtcgcgt 9650
Query: 409 ctacgtggggttcacagtcaaccctgctcgtcgggagcagcagcacaacgcg 460
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9651 ctacgtggggttcacagtcaaccctgctcgtcgggagcagcagcacaacgcg 9702
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 645 tccacctgcgcgtgctggcacacatgctgcgcgtgcccccgtgggcgcgcctcccgctca 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10812 tccacctgcgcgtgctggcacacatgctgcgcgtgcccccgtgggcgcgcctcccgctca 10871
Score = 105 bits (53), Expect = 5e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 507 gggagatggtgctcatagtacacggcttcccctccgcggtggccgcccttcgg 559
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10526 gggagatggtgctcatagtacacggcttcccctccgcggtggccgcccttcgg 10578
Score = 83.8 bits (42), Expect = 2e-13
Identities = 82/90 (91%), Gaps = 4/90 (4%)
Strand = Plus / Plus
Query: 902 caggatgaagagggtcccctgtgttgccccccaccctggctgctcccttcaagccgcaat 961
|||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||| ||
Sbjct: 11922 caggatgaagagggtcccctgtgttg-cccccaccctggctgctccc-tcagggcgc-at 11978
Query: 962 gtgatctgccttggcaaaagatttcctgca 991
|||||||||| ||||| |||| ||||||||
Sbjct: 11979 gtgatctgcc-tggcagaagagttcctgca 12007
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 477 gggcctggcggaccagtggccgcgggccttgg 508
||||||||||||||||||||||||||||||||
Sbjct: 9803 gggcctggcggaccagtggccgcgggccttgg 9834
Score = 60.0 bits (30), Expect = 2e-06
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 559 gttcgaatgggcctggcagcacccgaaggc 588
||||||||||||||||||||||||||||||
Sbjct: 10682 gttcgaatgggcctggcagcacccgaaggc 10711
Score = 58.0 bits (29), Expect = 1e-05
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 877 gtgcaccgtgtgcgcttgcgcactccagg 905
|||||||||||||||||||||||||||||
Sbjct: 11035 gtgcaccgtgtgcgcttgcgcactccagg 11063
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,573,482
Number of extensions: 154
Number of successful extensions: 154
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 7
Length of query: 991
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 970
Effective length of database: 2,808,413,156
Effective search space: 2724160761320
Effective search space used: 2724160761320
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)