Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003415
(1032 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002696046.1| PREDICTED: proteasome activator subunit 3-li... 493 e-140
Alignment gi|XP_002702256.1| PREDICTED: proteasome activator subunit 3-li... 493 e-140
Alignment gi|XP_002685892.1| PREDICTED: proteasome activator subunit 3-li... 275 6e-74
Alignment gi|XP_598451.2| PREDICTED: proteasome activator subunit 3-like ... 275 6e-74
Alignment gi|NP_001019680.2| proteasome activator complex subunit 1 [Bos ... 201 9e-52
Alignment gi|NP_001014889.1| proteasome activator complex subunit 2 [Bos ... 158 6e-39
>ref|XP_002696046.1| PREDICTED: proteasome activator subunit 3-like [Bos taurus].
Length = 254
Score = 493 bits (1270), Expect = e-140
Identities = 251/254 (98%), Positives = 252/254 (99%)
Frame = +2
Query: 230 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 409
MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS
Sbjct: 1 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 60
Query: 410 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 589
DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE
Sbjct: 61 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 120
Query: 590 KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS 769
KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS
Sbjct: 121 KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS 180
Query: 770 RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE 949
RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE
Sbjct: 181 RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE 240
Query: 950 KINRPRSKHAETLY 991
KI RPRS +AETLY
Sbjct: 241 KIKRPRSSNAETLY 254
>ref|XP_002702256.1| PREDICTED: proteasome activator subunit 3-like [Bos taurus].
Length = 254
Score = 493 bits (1270), Expect = e-140
Identities = 251/254 (98%), Positives = 252/254 (99%)
Frame = +2
Query: 230 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 409
MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS
Sbjct: 1 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 60
Query: 410 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 589
DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE
Sbjct: 61 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 120
Query: 590 KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS 769
KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS
Sbjct: 121 KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS 180
Query: 770 RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE 949
RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE
Sbjct: 181 RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE 240
Query: 950 KINRPRSKHAETLY 991
KI RPRS +AETLY
Sbjct: 241 KIKRPRSSNAETLY 254
>ref|XP_002685892.1| PREDICTED: proteasome activator subunit 3-like [Bos taurus].
Length = 252
Score = 275 bits (702), Expect = 6e-74
Identities = 151/257 (58%), Positives = 186/257 (72%), Gaps = 3/257 (1%)
Frame = +2
Query: 230 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 409
MAS LK++Q+V KVDSFR RI EAEDLV+ FFP+KL ELDS ++E L + DL++I S
Sbjct: 1 MASPLKLEQDVLGKVDSFRARIAQEAEDLVSTFFPQKLSELDSRVQE--LRLQDLSRIRS 58
Query: 410 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNG---MLKSNQQLVD 580
+P P+ ++ S D +R + KV +P G +L+SNQ LV+
Sbjct: 59 ---VPAPESLIAPESLITPDTAGDGPKRDPPPLQTQSSIKVLALPGGEGQLLRSNQHLVE 115
Query: 581 IIEKVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLD 760
+IE+VKPEI LL EKCNTV+MWVQLLIP++EDGNNFGVSIQE+TV +L TVES AASYL
Sbjct: 116 LIERVKPEIELLREKCNTVRMWVQLLIPKVEDGNNFGVSIQEDTVDQLWTVESTAASYLR 175
Query: 761 QISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILK 940
+ S YY TRAKLVSKI KYP VEDYRRTV E+DE EY+S+R I+ LRNQY TLHD+ILK
Sbjct: 176 RFSTYYNTRAKLVSKIVKYPQVEDYRRTVAEVDENEYLSVRQILLHLRNQYATLHDVILK 235
Query: 941 NIEKINRPRSKHAETLY 991
NIEKI PRS + + LY
Sbjct: 236 NIEKIKTPRSTNTDNLY 252
>ref|XP_598451.2| PREDICTED: proteasome activator subunit 3-like [Bos taurus].
Length = 252
Score = 275 bits (702), Expect = 6e-74
Identities = 151/257 (58%), Positives = 186/257 (72%), Gaps = 3/257 (1%)
Frame = +2
Query: 230 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 409
MAS LK++Q+V KVDSFR RI EAEDLV+ FFP+KL ELDS ++E L + DL++I S
Sbjct: 1 MASPLKLEQDVLGKVDSFRARIAQEAEDLVSTFFPQKLSELDSRVQE--LRLQDLSRIRS 58
Query: 410 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNG---MLKSNQQLVD 580
+P P+ ++ S D +R + KV +P G +L+SNQ LV+
Sbjct: 59 ---VPAPESLIAPESLITPDTAGDGPKRDPPPLQTQSSIKVLALPGGEGQLLRSNQHLVE 115
Query: 581 IIEKVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLD 760
+IE+VKPEI LL EKCNTV+MWVQLLIP++EDGNNFGVSIQE+TV +L TVES AASYL
Sbjct: 116 LIERVKPEIELLREKCNTVRMWVQLLIPKVEDGNNFGVSIQEDTVDQLWTVESTAASYLR 175
Query: 761 QISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILK 940
+ S YY TRAKLVSKI KYP VEDYRRTV E+DE EY+S+R I+ LRNQY TLHD+ILK
Sbjct: 176 RFSTYYNTRAKLVSKIVKYPQVEDYRRTVAEVDENEYLSVRQILLHLRNQYATLHDVILK 235
Query: 941 NIEKINRPRSKHAETLY 991
NIEKI PRS + + LY
Sbjct: 236 NIEKIKTPRSTNTDNLY 252
>ref|NP_001019680.2| proteasome activator complex subunit 1 [Bos taurus].
Length = 249
Score = 201 bits (511), Expect = 9e-52
Identities = 103/251 (41%), Positives = 163/251 (64%), Gaps = 1/251 (0%)
Frame = +2
Query: 242 LKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNL 421
L+V E + KVD FRE + ++ E+L+ ++FPKK+ ELD+FLKEP LN +L+ + + +++
Sbjct: 4 LRVLPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPDLNEANLSNLKAPLDI 63
Query: 422 PVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPN-GMLKSNQQLVDIIEKVK 598
PVPDP+ + K++ ++ +E +G P G + N+++V ++++VK
Sbjct: 64 PVPDPVKEKEKEE-----RRKQQEKEDKDEKKKGEDEDKGPPCGPVSCNEKIVVLLQRVK 118
Query: 599 PEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYY 778
PEI+ +IEK N V W+QL IPRIEDGNNFGV++QE+ + + ++ + QIS+Y+
Sbjct: 119 PEIKDVIEKLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTALHTKLEGFHTQISKYF 178
Query: 779 ITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIEKIN 958
R V+K AK PHV DYR+ V E+DE EY +RL++ E+RN Y L+D+ILKN EK+
Sbjct: 179 SERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNFEKLK 238
Query: 959 RPRSKHAETLY 991
+PR + +Y
Sbjct: 239 KPRGETKGMIY 249
>ref|NP_001014889.1| proteasome activator complex subunit 2 [Bos taurus].
Length = 239
Score = 158 bits (400), Expect = 6e-39
Identities = 83/250 (33%), Positives = 142/250 (56%)
Frame = +2
Query: 242 LKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNL 421
+++ E +VD FR+ + EAE+ + F P+K++ L+ L+E N+ DL + + +++
Sbjct: 7 VRLSGEALKQVDVFRQNLFQEAEEFLYRFLPQKIIYLNQLLQEDSFNVTDLNSLRAPLDI 66
Query: 422 PVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKP 601
P+PDP D ++ +K+ + +C G L N++++ ++ VKP
Sbjct: 67 PIPDP---PPKDDEMETDKQEKKEVPKC--------------GFLPGNEKVLALLALVKP 109
Query: 602 EIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYI 781
E+ L EKC V W+Q LIP+IEDGN+FGV+IQE+ + + V+++ ++ IS+Y+
Sbjct: 110 EVWTLKEKCILVITWIQHLIPKIEDGNDFGVAIQEKVLERVNAVKTKVEAFQTTISKYFS 169
Query: 782 TRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIEKINR 961
R V+K +K HV DYR V E DE Y LR ++ +LR Y L+ +I N+EKI
Sbjct: 170 ERGDAVAKASKETHVMDYRALVHERDEAVYGDLRAMVLDLRAFYAELYHIISSNLEKIVN 229
Query: 962 PRSKHAETLY 991
P+ + ++Y
Sbjct: 230 PKGEEKPSMY 239
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,890,267
Number of extensions: 1058411
Number of successful extensions: 4648
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4611
Number of HSP's successfully gapped: 6
Length of query: 344
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,273,310
Effective search space: 3439867710
Effective search space used: 3439867710
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003415
(1032 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_857850.1| PREDICTED: similar to proteaseome (prosome, mac... 493 e-140
Alignment gi|XP_857689.1| PREDICTED: similar to proteaseome (prosome, mac... 493 e-140
Alignment gi|XP_537633.2| PREDICTED: similar to proteasome activator subu... 484 e-137
Alignment gi|XP_857773.1| PREDICTED: similar to proteaseome (prosome, mac... 434 e-122
Alignment gi|XP_857730.1| PREDICTED: similar to proteaseome (prosome, mac... 229 1e-68
Alignment gi|XP_537380.1| PREDICTED: similar to Proteasome activator comp... 202 5e-52
Alignment gi|XP_537382.2| PREDICTED: similar to Proteasome activator comp... 166 4e-41
Alignment gi|XP_860199.1| PREDICTED: similar to Proteasome activator comp... 152 5e-37
Alignment gi|XP_860123.1| PREDICTED: similar to Proteasome activator comp... 147 1e-35
Alignment gi|XP_860164.1| PREDICTED: similar to Proteasome activator comp... 118 8e-27
>ref|XP_857850.1| PREDICTED: similar to proteaseome (prosome, macropain) 28 subunit,
3 (predicted) isoform 6 [Canis familiaris].
Length = 254
Score = 493 bits (1270), Expect = e-140
Identities = 251/254 (98%), Positives = 252/254 (99%)
Frame = +2
Query: 230 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 409
MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS
Sbjct: 1 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 60
Query: 410 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 589
DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE
Sbjct: 61 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 120
Query: 590 KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS 769
KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS
Sbjct: 121 KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS 180
Query: 770 RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE 949
RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE
Sbjct: 181 RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE 240
Query: 950 KINRPRSKHAETLY 991
KI RPRS +AETLY
Sbjct: 241 KIKRPRSSNAETLY 254
>ref|XP_857689.1| PREDICTED: similar to proteaseome (prosome, macropain) 28 subunit,
3 (predicted) isoform 3 [Canis familiaris].
Length = 254
Score = 493 bits (1270), Expect = e-140
Identities = 251/254 (98%), Positives = 252/254 (99%)
Frame = +2
Query: 230 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 409
MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS
Sbjct: 1 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 60
Query: 410 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 589
DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE
Sbjct: 61 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 120
Query: 590 KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS 769
KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS
Sbjct: 121 KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS 180
Query: 770 RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE 949
RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE
Sbjct: 181 RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE 240
Query: 950 KINRPRSKHAETLY 991
KI RPRS +AETLY
Sbjct: 241 KIKRPRSSNAETLY 254
>ref|XP_537633.2| PREDICTED: similar to proteasome activator subunit 3 isoform 2
isoform 2 [Canis familiaris].
Length = 268
Score = 484 bits (1245), Expect = e-137
Identities = 251/268 (93%), Positives = 252/268 (94%), Gaps = 14/268 (5%)
Frame = +2
Query: 230 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 409
MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS
Sbjct: 1 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 60
Query: 410 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 589
DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE
Sbjct: 61 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 120
Query: 590 KVKPEIRLLIEKCNT--------------VKMWVQLLIPRIEDGNNFGVSIQEETVAELR 727
KVKPEIRLLIEKCNT VKMWVQLLIPRIEDGNNFGVSIQEETVAELR
Sbjct: 121 KVKPEIRLLIEKCNTVRQGLGLHICVCVCVKMWVQLLIPRIEDGNNFGVSIQEETVAELR 180
Query: 728 TVESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRN 907
TVESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRN
Sbjct: 181 TVESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRN 240
Query: 908 QYVTLHDMILKNIEKINRPRSKHAETLY 991
QYVTLHDMILKNIEKI RPRS +AETLY
Sbjct: 241 QYVTLHDMILKNIEKIKRPRSSNAETLY 268
>ref|XP_857773.1| PREDICTED: similar to proteaseome (prosome, macropain) 28 subunit,
3 (predicted) isoform 5 [Canis familiaris].
Length = 231
Score = 434 bits (1116), Expect = e-122
Identities = 228/254 (89%), Positives = 229/254 (90%)
Frame = +2
Query: 230 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 409
MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS
Sbjct: 1 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 60
Query: 410 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 589
DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE
Sbjct: 61 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 120
Query: 590 KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS 769
KVKPEIRLLIEKCNT EETVAELRTVESEAASYLDQIS
Sbjct: 121 KVKPEIRLLIEKCNT-----------------------EETVAELRTVESEAASYLDQIS 157
Query: 770 RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE 949
RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE
Sbjct: 158 RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE 217
Query: 950 KINRPRSKHAETLY 991
KI RPRS +AETLY
Sbjct: 218 KIKRPRSSNAETLY 231
>ref|XP_857730.1| PREDICTED: similar to proteaseome (prosome, macropain) 28 subunit,
3 (predicted) isoform 4 [Canis familiaris].
Length = 140
Score = 229 bits (583), Expect(2) = 1e-68
Identities = 116/125 (92%), Positives = 121/125 (96%)
Frame = +2
Query: 617 IEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKL 796
+++ + VKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKL
Sbjct: 16 VKRPSKVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKL 75
Query: 797 VSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIEKINRPRSKH 976
VSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIEKI RPRS +
Sbjct: 76 VSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIEKIKRPRSSN 135
Query: 977 AETLY 991
AETLY
Sbjct: 136 AETLY 140
Score = 50.4 bits (119), Expect(2) = 1e-68
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +3
Query: 459 MDWTVPLTRSEGWMNVKRPSK 521
MDWTVPLTRSEGWMNVKRPSK
Sbjct: 1 MDWTVPLTRSEGWMNVKRPSK 21
>ref|XP_537380.1| PREDICTED: similar to Proteasome activator complex subunit 1
(Proteasome activator 28-alpha subunit) (PA28alpha)
(PA28a) (Activator of multicatalytic protease subunit 1)
(11S regulator complex alpha subunit) (REG-alpha)
(Interferon gamma up-regulated I-5111 p... [Canis
familiaris].
Length = 249
Score = 202 bits (513), Expect = 5e-52
Identities = 102/251 (40%), Positives = 163/251 (64%), Gaps = 1/251 (0%)
Frame = +2
Query: 242 LKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNL 421
L+V E + KVD FRE + ++ E+L+ ++FPKK+ ELD+FLKEP LN +L+ + + +++
Sbjct: 4 LRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI 63
Query: 422 PVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPN-GMLKSNQQLVDIIEKVK 598
PVPDP+ + K++ +E +E +G P G + N+++V +++++K
Sbjct: 64 PVPDPVKEKEKEE-----RKKQQEKEEKDEKKKGEDEDKGPPCGPVNCNEKIVVLLQRLK 118
Query: 599 PEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYY 778
PEI+ +IE+ N V W+QL IPRIEDGNNFGV++QE+ + + ++ + QIS+Y+
Sbjct: 119 PEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTALHTKLEGFHTQISKYF 178
Query: 779 ITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIEKIN 958
R V+K AK PHV DYR+ V E+DE EY +RL++ E+RN Y L+D+ILKN EK+
Sbjct: 179 SERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNFEKLK 238
Query: 959 RPRSKHAETLY 991
+PR + +Y
Sbjct: 239 KPRGETKGMIY 249
>ref|XP_537382.2| PREDICTED: similar to Proteasome activator complex subunit 2
(Proteasome activator 28-beta subunit) (PA28beta)
(PA28b) (Activator of multicatalytic protease subunit 2)
(11S regulator complex beta subunit) (REG-beta) isoform
1 [Canis familiaris].
Length = 239
Score = 166 bits (419), Expect = 4e-41
Identities = 86/250 (34%), Positives = 145/250 (58%)
Frame = +2
Query: 242 LKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNL 421
L++ E + +VD FR+ + EAE+ + F P+K++ L+ L+E LN+ DLT + + +++
Sbjct: 7 LRLSGEARKQVDVFRQNLFQEAEEFLYRFLPQKIIHLNQLLQEDSLNVADLTSLRAPLDI 66
Query: 422 PVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKP 601
P+PDP D ++ +K+ + +C G L N++++ ++ VKP
Sbjct: 67 PIPDP---PPKDDEMETDKQEKKEVPKC--------------GFLPGNEKVLALLALVKP 109
Query: 602 EIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYI 781
E+ L EKC V W+Q LIP+IEDGN+FGV+IQE+ + + V+++ ++ IS+Y+
Sbjct: 110 EVWTLKEKCILVITWIQHLIPKIEDGNDFGVAIQEKVLERVNAVKTKVEAFQTTISKYFS 169
Query: 782 TRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIEKINR 961
R V+K +K HV DYR V E DE Y LR ++ +LR Y L+ +I N+EKI
Sbjct: 170 ERGDAVAKASKETHVMDYRALVHERDEAAYGELRAMVLDLRAFYAELYHIISSNLEKIIN 229
Query: 962 PRSKHAETLY 991
P+ + ++Y
Sbjct: 230 PKGEEKPSMY 239
>ref|XP_860199.1| PREDICTED: similar to Proteasome activator complex subunit 2
(Proteasome activator 28-beta subunit) (PA28beta)
(PA28b) (Activator of multicatalytic protease subunit 2)
(11S regulator complex beta subunit) (REG-beta) isoform
5 [Canis familiaris].
Length = 228
Score = 152 bits (384), Expect = 5e-37
Identities = 79/230 (34%), Positives = 133/230 (57%)
Frame = +2
Query: 302 EAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNLPVPDPILLTNSHDGLDGPTY 481
+AE+ + F P+K++ L+ L+E LN+ DLT + + +++P+PDP D ++
Sbjct: 16 QAEEFLYRFLPQKIIHLNQLLQEDSLNVADLTSLRAPLDIPIPDP---PPKDDEMETDKQ 72
Query: 482 KKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIRLLIEKCNTVKMWVQLLI 661
+K+ + +C G L N++++ ++ VKPE+ L EKC V W+Q LI
Sbjct: 73 EKKEVPKC--------------GFLPGNEKVLALLALVKPEVWTLKEKCILVITWIQHLI 118
Query: 662 PRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRR 841
P+IEDGN+FGV+IQE+ + + V+++ ++ IS+Y+ R V+K +K HV DYR
Sbjct: 119 PKIEDGNDFGVAIQEKVLERVNAVKTKVEAFQTTISKYFSERGDAVAKASKETHVMDYRA 178
Query: 842 TVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIEKINRPRSKHAETLY 991
V E DE Y LR ++ +LR Y L+ +I N+EKI P+ + ++Y
Sbjct: 179 LVHERDEAAYGELRAMVLDLRAFYAELYHIISSNLEKIINPKGEEKPSMY 228
>ref|XP_860123.1| PREDICTED: similar to Proteasome activator complex subunit 2
(Proteasome activator 28-beta subunit) (PA28beta)
(PA28b) (Activator of multicatalytic protease subunit 2)
(11S regulator complex beta subunit) (REG-beta) isoform
3 [Canis familiaris].
Length = 215
Score = 147 bits (372), Expect = 1e-35
Identities = 77/222 (34%), Positives = 128/222 (57%)
Frame = +2
Query: 326 FFPKKLLELDSFLKEPILNIHDLTQIHSDMNLPVPDPILLTNSHDGLDGPTYKKRRLDEC 505
F P+K++ L+ L+E LN+ DLT + + +++P+PDP D ++ +K+ + +C
Sbjct: 11 FLPQKIIHLNQLLQEDSLNVADLTSLRAPLDIPIPDP---PPKDDEMETDKQEKKEVPKC 67
Query: 506 EEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNN 685
G L N++++ ++ VKPE+ L EKC V W+Q LIP+IEDGN+
Sbjct: 68 --------------GFLPGNEKVLALLALVKPEVWTLKEKCILVITWIQHLIPKIEDGND 113
Query: 686 FGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEK 865
FGV+IQE+ + + V+++ ++ IS+Y+ R V+K +K HV DYR V E DE
Sbjct: 114 FGVAIQEKVLERVNAVKTKVEAFQTTISKYFSERGDAVAKASKETHVMDYRALVHERDEA 173
Query: 866 EYISLRLIISELRNQYVTLHDMILKNIEKINRPRSKHAETLY 991
Y LR ++ +LR Y L+ +I N+EKI P+ + ++Y
Sbjct: 174 AYGELRAMVLDLRAFYAELYHIISSNLEKIINPKGEEKPSMY 215
>ref|XP_860164.1| PREDICTED: similar to Proteasome activator complex subunit 2
(Proteasome activator 28-beta subunit) (PA28beta)
(PA28b) (Activator of multicatalytic protease subunit 2)
(11S regulator complex beta subunit) (REG-beta) isoform
4 [Canis familiaris].
Length = 162
Score = 118 bits (296), Expect = 8e-27
Identities = 59/148 (39%), Positives = 92/148 (62%)
Frame = +2
Query: 548 GMLKSNQQLVDIIEKVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELR 727
G L N++++ ++ VKPE+ L EKC V W+Q LIP+IEDGN+FGV+IQE+ + +
Sbjct: 15 GFLPGNEKVLALLALVKPEVWTLKEKCILVITWIQHLIPKIEDGNDFGVAIQEKVLERVN 74
Query: 728 TVESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRN 907
V+++ ++ IS+Y+ R V+K +K HV DYR V E DE Y LR ++ +LR
Sbjct: 75 AVKTKVEAFQTTISKYFSERGDAVAKASKETHVMDYRALVHERDEAAYGELRAMVLDLRA 134
Query: 908 QYVTLHDMILKNIEKINRPRSKHAETLY 991
Y L+ +I N+EKI P+ + ++Y
Sbjct: 135 FYAELYHIISSNLEKIINPKGEEKPSMY 162
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,317,594
Number of extensions: 1046557
Number of successful extensions: 4828
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4774
Number of HSP's successfully gapped: 13
Length of query: 344
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 240
Effective length of database: 15,407,560
Effective search space: 3697814400
Effective search space used: 3697814400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003415
(1032 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005780.2| proteasome activator complex subunit 3 isoform ... 493 e-140
Alignment gi|NP_789839.1| proteasome activator complex subunit 3 isoform ... 484 e-137
Alignment gi|NP_006254.1| proteasome activator complex subunit 1 isoform ... 202 4e-52
Alignment gi|NP_788955.1| proteasome activator complex subunit 1 isoform ... 180 2e-45
Alignment gi|NP_002809.2| proteasome activator complex subunit 2 [Homo sa... 163 3e-40
>ref|NP_005780.2| proteasome activator complex subunit 3 isoform 1 [Homo sapiens].
Length = 254
Score = 493 bits (1270), Expect = e-140
Identities = 251/254 (98%), Positives = 252/254 (99%)
Frame = +2
Query: 230 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 409
MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS
Sbjct: 1 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 60
Query: 410 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 589
DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE
Sbjct: 61 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 120
Query: 590 KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS 769
KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS
Sbjct: 121 KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS 180
Query: 770 RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE 949
RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE
Sbjct: 181 RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE 240
Query: 950 KINRPRSKHAETLY 991
KI RPRS +AETLY
Sbjct: 241 KIKRPRSSNAETLY 254
>ref|NP_789839.1| proteasome activator complex subunit 3 isoform 2 [Homo sapiens].
Length = 267
Score = 484 bits (1246), Expect = e-137
Identities = 251/267 (94%), Positives = 252/267 (94%), Gaps = 13/267 (4%)
Frame = +2
Query: 230 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 409
MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS
Sbjct: 1 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 60
Query: 410 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 589
DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE
Sbjct: 61 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 120
Query: 590 KVKPEIRLLIEKCNT-------------VKMWVQLLIPRIEDGNNFGVSIQEETVAELRT 730
KVKPEIRLLIEKCNT VKMWVQLLIPRIEDGNNFGVSIQEETVAELRT
Sbjct: 121 KVKPEIRLLIEKCNTPSGKGPHICFDLQVKMWVQLLIPRIEDGNNFGVSIQEETVAELRT 180
Query: 731 VESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQ 910
VESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQ
Sbjct: 181 VESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQ 240
Query: 911 YVTLHDMILKNIEKINRPRSKHAETLY 991
YVTLHDMILKNIEKI RPRS +AETLY
Sbjct: 241 YVTLHDMILKNIEKIKRPRSSNAETLY 267
>ref|NP_006254.1| proteasome activator complex subunit 1 isoform 1 [Homo sapiens].
Length = 249
Score = 202 bits (514), Expect = 4e-52
Identities = 101/253 (39%), Positives = 166/253 (65%), Gaps = 1/253 (0%)
Frame = +2
Query: 236 SLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDM 415
++L+V E + KVD FRE + ++ E+L+ ++FPKK+ ELD+FLKEP LN +L+ + + +
Sbjct: 2 AMLRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPL 61
Query: 416 NLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPN-GMLKSNQQLVDIIEK 592
++PVPDP+ + K++ ++ +E +G P G + N+++V ++++
Sbjct: 62 DIPVPDPVKEKEKEE-----RKKQQEKEDKDEKKKGEDEDKGPPCGPVNCNEKIVVLLQR 116
Query: 593 VKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISR 772
+KPEI+ +IE+ N V W+QL IPRIEDGNNFGV++QE+ + ++ ++ + QIS+
Sbjct: 117 LKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISK 176
Query: 773 YYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIEK 952
Y+ R V+K AK PHV DYR+ V E+DE EY +RL++ E+RN Y L+D+ILKN EK
Sbjct: 177 YFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNFEK 236
Query: 953 INRPRSKHAETLY 991
+ +PR + +Y
Sbjct: 237 LKKPRGETKGMIY 249
>ref|NP_788955.1| proteasome activator complex subunit 1 isoform 2 [Homo sapiens].
Length = 250
Score = 180 bits (456), Expect = 2e-45
Identities = 91/228 (39%), Positives = 150/228 (65%), Gaps = 1/228 (0%)
Frame = +2
Query: 236 SLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDM 415
++L+V E + KVD FRE + ++ E+L+ ++FPKK+ ELD+FLKEP LN +L+ + + +
Sbjct: 2 AMLRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPL 61
Query: 416 NLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPN-GMLKSNQQLVDIIEK 592
++PVPDP+ + K++ ++ +E +G P G + N+++V ++++
Sbjct: 62 DIPVPDPVKEKEKEE-----RKKQQEKEDKDEKKKGEDEDKGPPCGPVNCNEKIVVLLQR 116
Query: 593 VKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISR 772
+KPEI+ +IE+ N V W+QL IPRIEDGNNFGV++QE+ + ++ ++ + QIS+
Sbjct: 117 LKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISK 176
Query: 773 YYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYV 916
Y+ R V+K AK PHV DYR+ V E+DE EY +RL++ E+RN YV
Sbjct: 177 YFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYV 224
>ref|NP_002809.2| proteasome activator complex subunit 2 [Homo sapiens].
Length = 239
Score = 163 bits (412), Expect = 3e-40
Identities = 84/250 (33%), Positives = 145/250 (58%)
Frame = +2
Query: 242 LKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNL 421
+++ E + +V+ FR+ + EAE+ + F P+K++ L+ L+E LN+ DLT + + +++
Sbjct: 7 VRLSGEARKQVEVFRQNLFQEAEEFLYRFLPQKIIYLNQLLQEDSLNVADLTSLRAPLDI 66
Query: 422 PVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKP 601
P+PDP D ++ +K+ + +C G L N++++ ++ VKP
Sbjct: 67 PIPDP---PPKDDEMETDKQEKKEVHKC--------------GFLPGNEKVLSLLALVKP 109
Query: 602 EIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYI 781
E+ L EKC V W+Q LIP+IEDGN+FGV+IQE+ + + V+++ ++ IS+Y+
Sbjct: 110 EVWTLKEKCILVITWIQHLIPKIEDGNDFGVAIQEKVLERVNAVKTKVEAFQTTISKYFS 169
Query: 782 TRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIEKINR 961
R V+K +K HV DYR V E DE Y LR ++ +LR Y L+ +I N+EKI
Sbjct: 170 ERGDAVAKASKETHVMDYRALVHERDEAAYGELRAMVLDLRAFYAELYHIISSNLEKIVN 229
Query: 962 PRSKHAETLY 991
P+ + ++Y
Sbjct: 230 PKGEEKPSMY 239
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,495,619
Number of extensions: 1017440
Number of successful extensions: 4646
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4601
Number of HSP's successfully gapped: 5
Length of query: 344
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,901,872
Effective search space: 3591351152
Effective search space used: 3591351152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003415
(1032 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035322.1| proteasome activator complex subunit 3 [Mus mus... 493 e-140
Alignment gi|NP_035319.1| proteasome activator complex subunit 1 [Mus mus... 202 3e-52
Alignment gi|NP_035320.1| proteasome activator complex subunit 2 isoform ... 165 6e-41
Alignment gi|NP_001025026.1| proteasome activator complex subunit 2 isofo... 164 1e-40
>ref|NP_035322.1| proteasome activator complex subunit 3 [Mus musculus].
Length = 254
Score = 493 bits (1270), Expect = e-140
Identities = 251/254 (98%), Positives = 252/254 (99%)
Frame = +2
Query: 230 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 409
MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS
Sbjct: 1 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 60
Query: 410 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 589
DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE
Sbjct: 61 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 120
Query: 590 KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS 769
KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS
Sbjct: 121 KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS 180
Query: 770 RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE 949
RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE
Sbjct: 181 RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE 240
Query: 950 KINRPRSKHAETLY 991
KI RPRS +AETLY
Sbjct: 241 KIKRPRSSNAETLY 254
>ref|NP_035319.1| proteasome activator complex subunit 1 [Mus musculus].
Length = 249
Score = 202 bits (514), Expect = 3e-52
Identities = 103/251 (41%), Positives = 163/251 (64%), Gaps = 1/251 (0%)
Frame = +2
Query: 242 LKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNL 421
L+V E + KVD FRE + S+ E+L+ ++FPKK+ ELD+FLKEP LN +L+ + + +++
Sbjct: 4 LRVHPEAQAKVDVFREDLCSKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI 63
Query: 422 PVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPN-GMLKSNQQLVDIIEKVK 598
PVPDP+ + K++ +E EE +G + P G + N+++V +++++K
Sbjct: 64 PVPDPVKEKEKEE-----RKKQQEKEEKEEKKKGDEDDKGPPCGPVNCNEKIVVLLQRLK 118
Query: 599 PEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYY 778
PEI+ + E+ N V W+QL IPRIEDGNNFGV++QE+ + + ++ + QIS+Y+
Sbjct: 119 PEIKDVTEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTNLHTKLEGFHTQISKYF 178
Query: 779 ITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIEKIN 958
R V+K AK PHV DYR+ V E+DE EY +RL++ E+RN Y L+D+ILKN EK+
Sbjct: 179 SERGDAVAKAAKQPHVGDYRQLVHELDEAEYQEIRLMVMEIRNAYAVLYDIILKNFEKLK 238
Query: 959 RPRSKHAETLY 991
+PR + +Y
Sbjct: 239 KPRGETKGMIY 249
>ref|NP_035320.1| proteasome activator complex subunit 2 isoform 1 [Mus musculus].
Length = 239
Score = 165 bits (417), Expect = 6e-41
Identities = 85/250 (34%), Positives = 145/250 (58%)
Frame = +2
Query: 242 LKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNL 421
+++ E + +VD FR+ + EA+D + F P+K++ L L+E LN+ DL+ + + +++
Sbjct: 7 VRLSGEARKQVDVFRQNLFQEADDFLCTFLPRKIISLSQLLQEDSLNVADLSSLRAPLDI 66
Query: 422 PVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKP 601
P+PDP D ++ +K+ + +C G L N++L+ ++ VKP
Sbjct: 67 PIPDP---PPKDDEMETDKQEKKEVPKC--------------GYLPGNEKLLALLALVKP 109
Query: 602 EIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYI 781
E+ L EKC V W+Q LIP+IEDGN+FGV+IQE+ + + V+++ ++ IS+Y+
Sbjct: 110 EVWTLKEKCILVITWIQHLIPKIEDGNDFGVAIQEKVLERVNAVKTKVEAFQTTISKYFS 169
Query: 782 TRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIEKINR 961
R V+K +K HV DYR V E DE Y +LR ++ +LR Y L+ +I N+EKI
Sbjct: 170 ERGDAVAKASKDTHVMDYRALVHERDEAAYGALRAMVLDLRAFYAELYHIISSNLEKIVN 229
Query: 962 PRSKHAETLY 991
P+ + ++Y
Sbjct: 230 PKGEEKPSMY 239
>ref|NP_001025026.1| proteasome activator complex subunit 2 isoform 2 [Mus musculus].
Length = 231
Score = 164 bits (414), Expect = 1e-40
Identities = 86/244 (35%), Positives = 141/244 (57%)
Frame = +2
Query: 260 VKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNLPVPDPI 439
V L VD FR+ + EA+D + F P+K++ L L+E LN+ DL+ + + +++P+PDP
Sbjct: 5 VLLTVDVFRQNLFQEADDFLCTFLPRKIISLSQLLQEDSLNVADLSSLRAPLDIPIPDP- 63
Query: 440 LLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIRLLI 619
D ++ +K+ + +C G L N++L+ ++ VKPE+ L
Sbjct: 64 --PPKDDEMETDKQEKKEVPKC--------------GYLPGNEKLLALLALVKPEVWTLK 107
Query: 620 EKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLV 799
EKC V W+Q LIP+IEDGN+FGV+IQE+ + + V+++ ++ IS+Y+ R V
Sbjct: 108 EKCILVITWIQHLIPKIEDGNDFGVAIQEKVLERVNAVKTKVEAFQTTISKYFSERGDAV 167
Query: 800 SKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIEKINRPRSKHA 979
+K +K HV DYR V E DE Y +LR ++ +LR Y L+ +I N+EKI P+ +
Sbjct: 168 AKASKDTHVMDYRALVHERDEAAYGALRAMVLDLRAFYAELYHIISSNLEKIVNPKGEEK 227
Query: 980 ETLY 991
++Y
Sbjct: 228 PSMY 231
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,602,019
Number of extensions: 860426
Number of successful extensions: 3792
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3749
Number of HSP's successfully gapped: 4
Length of query: 344
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 242
Effective length of database: 12,553,887
Effective search space: 3038040654
Effective search space used: 3038040654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003415
(1032 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999513.1| proteasome activator complex subunit 3 [Sus scr... 493 e-140
Alignment gi|XP_001925551.1| PREDICTED: proteasome activator complex subu... 273 1e-73
Alignment gi|NP_999469.1| proteasome activator complex subunit 1 [Sus scr... 192 3e-49
Alignment gi|NP_999444.1| proteasome activator complex subunit 2 [Sus scr... 160 1e-39
>ref|NP_999513.1| proteasome activator complex subunit 3 [Sus scrofa].
Length = 254
Score = 493 bits (1270), Expect = e-140
Identities = 251/254 (98%), Positives = 252/254 (99%)
Frame = +2
Query: 230 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 409
MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS
Sbjct: 1 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 60
Query: 410 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 589
DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE
Sbjct: 61 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIE 120
Query: 590 KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS 769
KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS
Sbjct: 121 KVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQIS 180
Query: 770 RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE 949
RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE
Sbjct: 181 RYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIE 240
Query: 950 KINRPRSKHAETLY 991
KI RPRS +AETLY
Sbjct: 241 KIKRPRSSNAETLY 254
>ref|XP_001925551.1| PREDICTED: proteasome activator complex subunit 3-like [Sus
scrofa].
Length = 246
Score = 273 bits (698), Expect = 1e-73
Identities = 151/257 (58%), Positives = 186/257 (72%), Gaps = 3/257 (1%)
Frame = +2
Query: 230 MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHS 409
MAS LK++Q+V+ KVDSFR RI EAEDLV+ FFP+KL ELDS ++E L + DL++I S
Sbjct: 1 MASSLKLEQDVQGKVDSFRARIAQEAEDLVSTFFPQKLSELDSQVQE--LRLQDLSRIRS 58
Query: 410 DMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNG---MLKSNQQLVD 580
VP P + DGP + L + +V +P G +L+SNQ LV+
Sbjct: 59 -----VPAPETTVSPDTVGDGPNRSPQPL----QTQPSIRVPALPGGEGQLLRSNQHLVE 109
Query: 581 IIEKVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLD 760
+IE+VKPEI LL EKCNTV+MWVQLLIP++EDGNNFGVSIQE+TV +L TVES AASYL
Sbjct: 110 LIERVKPEIELLREKCNTVRMWVQLLIPKVEDGNNFGVSIQEDTVDQLWTVESTAASYLR 169
Query: 761 QISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILK 940
+ S YY TRAKLVSKI KYP VEDYRRTV E+DE EY+S+R I+ +RNQY TLHD+ILK
Sbjct: 170 RFSTYYNTRAKLVSKIVKYPQVEDYRRTVAEVDENEYLSVRQILLHVRNQYATLHDVILK 229
Query: 941 NIEKINRPRSKHAETLY 991
NIEKI PRS + + LY
Sbjct: 230 NIEKIKTPRSTNTDNLY 246
>ref|NP_999469.1| proteasome activator complex subunit 1 [Sus scrofa].
Length = 249
Score = 192 bits (487), Expect = 3e-49
Identities = 98/251 (39%), Positives = 160/251 (63%), Gaps = 1/251 (0%)
Frame = +2
Query: 242 LKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNL 421
L+V E + KVD FRE + ++ E+L+ ++FPKK+ ELD+FLKEP LN +L+ + + +++
Sbjct: 4 LRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI 63
Query: 422 PVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPN-GMLKSNQQLVDIIEKVK 598
PVPDP+ + K++ ++ +E +G P G + N+++V +++++K
Sbjct: 64 PVPDPVKEKEKEE-----RKKQQEKEDKDEKKKGEDEDKGPPCGPVNCNEKIVVLLQRLK 118
Query: 599 PEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYY 778
PEI+ +IE+ N V W+QL IPRIEDG NFGV++QE+ + + ++ + QIS+Y+
Sbjct: 119 PEIKDVIEQLNLVTTWLQLQIPRIEDGINFGVAVQEKVFELMTALHTKLEGFHTQISKYF 178
Query: 779 ITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIEKIN 958
R V+K AK PHV DYR+ V E+DE EY +RL++ E+ N Y L+ +ILKN EK+
Sbjct: 179 SERGDAVAKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEILNAYAVLYGIILKNFEKLK 238
Query: 959 RPRSKHAETLY 991
+PR + +Y
Sbjct: 239 KPRGETKGMIY 249
>ref|NP_999444.1| proteasome activator complex subunit 2 [Sus scrofa].
Length = 239
Score = 160 bits (405), Expect = 1e-39
Identities = 83/250 (33%), Positives = 144/250 (57%)
Frame = +2
Query: 242 LKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNL 421
+++ E + +VD FR+ + EAE+ + F P+K++ L L+E LN+ DLT + + +++
Sbjct: 7 VRLSGEARKQVDVFRQNLFQEAEEFLYRFLPQKIIYLSQLLQEDSLNVTDLTSLRAPLDI 66
Query: 422 PVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKP 601
P+PDP D ++ +K+ + +C G L N++++ ++ VKP
Sbjct: 67 PIPDP---PPKDDEMETDKQEKKEVPKC--------------GFLPGNEKILALLGLVKP 109
Query: 602 EIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYI 781
E+ L EKC V W+Q LIP+IEDGN+FGV++QE+ + + V+++ ++ IS+Y+
Sbjct: 110 EVWTLKEKCILVITWIQHLIPKIEDGNDFGVAVQEKVLERVNAVKTKVEAFQTTISKYFS 169
Query: 782 TRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIEKINR 961
R V+K +K HV DYR V E DE + LR ++ +LR Y L+ +I N+EKI
Sbjct: 170 ERGDAVAKASKETHVMDYRALVHERDEAAHGELRAMVLDLRAFYAELYHIISSNLEKIVD 229
Query: 962 PRSKHAETLY 991
P+ + ++Y
Sbjct: 230 PKGEEKPSMY 239
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,876,072
Number of extensions: 752804
Number of successful extensions: 3110
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3072
Number of HSP's successfully gapped: 4
Length of query: 344
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 244
Effective length of database: 8,854,232
Effective search space: 2160432608
Effective search space used: 2160432608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003415
(1032 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 387 e-105
>Sscrofa_Chr12
|| Length = 63588571
Score = 387 bits (195), Expect = e-105
Identities = 195/195 (100%)
Strand = Plus / Minus
Query: 79 cacgaagggagggagcaagtgagcagtgagtgggccagcgagagcggccgcgtcccgaga 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20250256 cacgaagggagggagcaagtgagcagtgagtgggccagcgagagcggccgcgtcccgaga 20250197
Query: 139 gcagccgagattcctcccgtccctctgaccctctccccggagcccacagcgcctccggtc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20250196 gcagccgagattcctcccgtccctctgaccctctccccggagcccacagcgcctccggtc 20250137
Query: 199 tccagcggagcggacacggcccggcccggccatggcctcgttgctgaaggtggatcagga 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20250136 tccagcggagcggacacggcccggcccggccatggcctcgttgctgaaggtggatcagga 20250077
Query: 259 agtaaagctcaaggt 273
|||||||||||||||
Sbjct: 20250076 agtaaagctcaaggt 20250062
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 520 aggaaccaaggtgtttgtgatgcccaatgggatgctaaaaagcaaccagcagctggtgga 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20246831 aggaaccaaggtgtttgtgatgcccaatgggatgctaaaaagcaaccagcagctggtgga 20246772
Query: 580 cattattgagaaagtgaagcctgagattcggctgctgatcgagaaatgcaacacggt 636
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20246771 cattattgagaaagtgaagcctgagattcggctgctgatcgagaaatgcaacacggt 20246715
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 366 aggagccaatcctaaacatccatgacctaactcagatccactcagacatgaatctcccag 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20248965 aggagccaatcctaaacatccatgacctaactcagatccactcagacatgaatctcccag 20248906
Query: 426 tccctgaccccattcttctcaccaatagccatgatggactggacggt 472
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20248905 tccctgaccccattcttctcaccaatagccatgatggactggacggt 20248859
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 826 ggaggactatcggcgcaccgtgacagagattgatgagaaagaatatatcagccttcggct 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20245929 ggaggactatcggcgcaccgtgacagagattgatgagaaagaatatatcagccttcggct 20245870
Query: 886 catcatatcagagctaaggaatcagtatgt 915
||||||||||||||||||||||||||||||
Sbjct: 20245869 catcatatcagagctaaggaatcagtatgt 20245840
Score = 176 bits (89), Expect = 2e-41
Identities = 110/117 (94%)
Strand = Plus / Minus
Query: 914 gtcactctacatgacatgatcctgaaaaacatcgagaagatcaaccggccccggagcaag 973
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 20244960 gtcactctacatgacatgatcctgaaaaacatcgagaagatcaaacggccccggagcagc 20244901
Query: 974 catgcagagacactgtactgaggcccagggcagggccaggggactctgtgagtctgg 1030
|||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 20244900 aatgcagagacactgtactgaggccagggccagggccaggggactctgtgagtctgg 20244844
Score = 141 bits (71), Expect = 9e-31
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 634 ggtcaaaatgtgggtacaactcctgattcctaggatagaagatgggaacaactttggggt 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20246485 ggtcaaaatgtgggtacaactcctgattcctaggatagaagatgggaacaactttggggt 20246426
Query: 694 gtccattcagg 704
|||||||||||
Sbjct: 20246425 gtccattcagg 20246415
Score = 137 bits (69), Expect = 1e-29
Identities = 72/73 (98%)
Strand = Plus / Minus
Query: 699 ttcaggaagagacagttgcagaattaagaactgttgagagtgaagcagcttcttatctgg 758
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 20246274 ttcaggaagagacagttgcagaattaagaactgttgagagtgaagcagcctcttatctgg 20246215
Query: 759 accagatttctag 771
|||||||||||||
Sbjct: 20246214 accagatttctag 20246202
Score = 131 bits (66), Expect = 8e-28
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 303 aggcagaagacttggtggcaaattttttcccaaagaaattgttagaacttgatagttttt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20249224 aggcagaagacttggtggcaaattttttcccaaagaaattgttagaacttgatagttttt 20249165
Query: 363 tgaagg 368
||||||
Sbjct: 20249164 tgaagg 20249159
Score = 115 bits (58), Expect = 5e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 770 agatattatattacaagagccaaattggtttctaaaatagctaaatacccccatgtgg 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20246104 agatattatattacaagagccaaattggtttctaaaatagctaaatacccccatgtgg 20246047
Score = 91.7 bits (46), Expect = 7e-16
Identities = 49/50 (98%)
Strand = Plus / Minus
Query: 473 cccacttacaagaagcgaaggttggatgaatgtgaagaggccttccaagg 522
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 20247665 cccacttataagaagcgaaggttggatgaatgtgaagaggccttccaagg 20247616
Score = 71.9 bits (36), Expect = 7e-10
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 270 aggttgattctttcagggagcggattacaagtgagg 305
||||||||||||||||||||||||||||||||||||
Sbjct: 20249380 aggttgattctttcagggagcggattacaagtgagg 20249345
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,323,152
Number of extensions: 204
Number of successful extensions: 204
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 11
Length of query: 1032
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1011
Effective length of database: 2,808,413,156
Effective search space: 2839305700716
Effective search space used: 2839305700716
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)