Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003427
(837 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029969.1| cytochrome b-c1 complex subunit 7 [Bos tauru... 193 2e-49
Alignment gi|XP_002707882.1| PREDICTED: cytochrome b-c1 complex subunit 7... 148 5e-36
Alignment gi|XP_002705011.1| PREDICTED: ubiquinol-cytochrome c reductase ... 146 2e-35
>ref|NP_001029969.1| cytochrome b-c1 complex subunit 7 [Bos taurus].
Length = 111
Score = 193 bits (490), Expect = 2e-49
Identities = 92/99 (92%), Positives = 97/99 (97%)
Frame = +1
Query: 34 MASRPAVAASSKWLEGIRKWYYNAAGFNKLGLMRDDTIYEDDDVKEAIRRLPENLYNDRV 213
MA RPAV+ASS+WLEGIRKWYYNAAGFNKLGLMRDDTI+E+DDVKEAIRRLPENLYNDRV
Sbjct: 1 MAGRPAVSASSRWLEGIRKWYYNAAGFNKLGLMRDDTIHENDDVKEAIRRLPENLYNDRV 60
Query: 214 FRIKRALDLTMRQQILPKEQWTKYEEDKFYLEPYLKEVI 330
FRIKRALDL+MRQQILPKEQWTKYEEDK YLEPYLKEVI
Sbjct: 61 FRIKRALDLSMRQQILPKEQWTKYEEDKSYLEPYLKEVI 99
>ref|XP_002707882.1| PREDICTED: cytochrome b-c1 complex subunit 7-like [Bos taurus].
Length = 228
Score = 148 bits (374), Expect = 5e-36
Identities = 75/108 (69%), Positives = 87/108 (80%)
Frame = +1
Query: 7 QATLRSRVKMASRPAVAASSKWLEGIRKWYYNAAGFNKLGLMRDDTIYEDDDVKEAIRRL 186
Q L R + A++ASS+W EGI K YYNAAGFNKLGLM+DDTIYE+DD KEA+RRL
Sbjct: 110 QGELDLRSTWQAACAISASSRWPEGIYKGYYNAAGFNKLGLMQDDTIYENDDAKEAVRRL 169
Query: 187 PENLYNDRVFRIKRALDLTMRQQILPKEQWTKYEEDKFYLEPYLKEVI 330
PENLY+DR FRIK ALD+ +RQQILPK QWT+Y EDK YLEP LKEV+
Sbjct: 170 PENLYDDREFRIKTALDMHVRQQILPKPQWTEY-EDKAYLEPSLKEVL 216
>ref|XP_002705011.1| PREDICTED: ubiquinol-cytochrome c reductase binding protein-like
[Bos taurus].
Length = 102
Score = 146 bits (369), Expect = 2e-35
Identities = 72/94 (76%), Positives = 81/94 (86%)
Frame = +1
Query: 49 AVAASSKWLEGIRKWYYNAAGFNKLGLMRDDTIYEDDDVKEAIRRLPENLYNDRVFRIKR 228
A A SS+W EGI K YYNAAGFNKLGLM+DDTIYE+DD KEA+RRLPENLY+DR FRIK
Sbjct: 2 ATATSSRWPEGIYKGYYNAAGFNKLGLMQDDTIYENDDAKEAVRRLPENLYDDREFRIKT 61
Query: 229 ALDLTMRQQILPKEQWTKYEEDKFYLEPYLKEVI 330
ALD+ +RQQILPK QWT+Y EDK YLEP LKEV+
Sbjct: 62 ALDMHVRQQILPKPQWTEY-EDKAYLEPSLKEVL 94
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 27,747,219
Number of extensions: 717066
Number of successful extensions: 1314
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1310
Number of HSP's successfully gapped: 3
Length of query: 279
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 178
Effective length of database: 14,339,486
Effective search space: 2552428508
Effective search space used: 2552428508
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003427
(837 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535132.2| PREDICTED: similar to ubiquinol-cytochrome c re... 191 9e-49
>ref|XP_535132.2| PREDICTED: similar to ubiquinol-cytochrome c reductase binding
protein [Canis familiaris].
Length = 144
Score = 191 bits (484), Expect = 9e-49
Identities = 90/95 (94%), Positives = 94/95 (98%)
Frame = +1
Query: 46 PAVAASSKWLEGIRKWYYNAAGFNKLGLMRDDTIYEDDDVKEAIRRLPENLYNDRVFRIK 225
PAVAASS+WLEGIRKWYYNAAGFNKLGLMRDDTIYE++DVKEAIRRLPENLYNDR+FRIK
Sbjct: 38 PAVAASSRWLEGIRKWYYNAAGFNKLGLMRDDTIYENEDVKEAIRRLPENLYNDRMFRIK 97
Query: 226 RALDLTMRQQILPKEQWTKYEEDKFYLEPYLKEVI 330
RALDLTMR QILPKEQWTKYEEDKFYLEPYLKEVI
Sbjct: 98 RALDLTMRHQILPKEQWTKYEEDKFYLEPYLKEVI 132
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 28,669,110
Number of extensions: 658517
Number of successful extensions: 1400
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1400
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 178
Effective length of database: 15,507,568
Effective search space: 2760347104
Effective search space used: 2760347104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003427
(837 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006285.1| cytochrome b-c1 complex subunit 7 isoform 1 [Ho... 183 1e-46
Alignment gi|NP_001186904.1| cytochrome b-c1 complex subunit 7 isoform 2 ... 127 1e-29
>ref|NP_006285.1| cytochrome b-c1 complex subunit 7 isoform 1 [Homo sapiens].
Length = 111
Score = 183 bits (465), Expect = 1e-46
Identities = 85/99 (85%), Positives = 93/99 (93%)
Frame = +1
Query: 34 MASRPAVAASSKWLEGIRKWYYNAAGFNKLGLMRDDTIYEDDDVKEAIRRLPENLYNDRV 213
MA + AV+AS KWL+GIRKWYYNAAGFNKLGLMRDDTIYED+DVKEAIRRLPENLYNDR+
Sbjct: 1 MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM 60
Query: 214 FRIKRALDLTMRQQILPKEQWTKYEEDKFYLEPYLKEVI 330
FRIKRALDL ++ QILPKEQWTKYEE+ FYLEPYLKEVI
Sbjct: 61 FRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVI 99
>ref|NP_001186904.1| cytochrome b-c1 complex subunit 7 isoform 2 [Homo sapiens].
Length = 79
Score = 127 bits (320), Expect = 1e-29
Identities = 59/67 (88%), Positives = 64/67 (95%)
Frame = +1
Query: 130 MRDDTIYEDDDVKEAIRRLPENLYNDRVFRIKRALDLTMRQQILPKEQWTKYEEDKFYLE 309
MRDDTIYED+DVKEAIRRLPENLYNDR+FRIKRALDL ++ QILPKEQWTKYEE+ FYLE
Sbjct: 1 MRDDTIYEDEDVKEAIRRLPENLYNDRMFRIKRALDLNLKHQILPKEQWTKYEEENFYLE 60
Query: 310 PYLKEVI 330
PYLKEVI
Sbjct: 61 PYLKEVI 67
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 27,898,621
Number of extensions: 635013
Number of successful extensions: 1324
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1321
Number of HSP's successfully gapped: 2
Length of query: 279
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 178
Effective length of database: 14,967,800
Effective search space: 2664268400
Effective search space used: 2664268400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003427
(837 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080495.1| cytochrome b-c1 complex subunit 7 [Mus musculus]. 184 9e-47
Alignment gi|XP_003084509.1| PREDICTED: cytochrome b-c1 complex subunit 7... 179 3e-45
Alignment gi|XP_003086216.1| PREDICTED: cytochrome b-c1 complex subunit 7... 178 5e-45
>ref|NP_080495.1| cytochrome b-c1 complex subunit 7 [Mus musculus].
Length = 111
Score = 184 bits (466), Expect = 9e-47
Identities = 86/99 (86%), Positives = 94/99 (94%)
Frame = +1
Query: 34 MASRPAVAASSKWLEGIRKWYYNAAGFNKLGLMRDDTIYEDDDVKEAIRRLPENLYNDRV 213
MA R AV+ASSKWL+G RKWYYNAAGFNKLGLMRDDT++E +DVKEAIRRLPE+LYNDR+
Sbjct: 1 MAGRSAVSASSKWLDGFRKWYYNAAGFNKLGLMRDDTLHETEDVKEAIRRLPEDLYNDRM 60
Query: 214 FRIKRALDLTMRQQILPKEQWTKYEEDKFYLEPYLKEVI 330
FRIKRALDLTMR QILPK+QWTKYEEDKFYLEPYLKEVI
Sbjct: 61 FRIKRALDLTMRHQILPKDQWTKYEEDKFYLEPYLKEVI 99
>ref|XP_003084509.1| PREDICTED: cytochrome b-c1 complex subunit 7-like [Mus musculus].
Length = 111
Score = 179 bits (453), Expect = 3e-45
Identities = 84/99 (84%), Positives = 91/99 (91%)
Frame = +1
Query: 34 MASRPAVAASSKWLEGIRKWYYNAAGFNKLGLMRDDTIYEDDDVKEAIRRLPENLYNDRV 213
MA R AV+ASSKWL+G RKWYYNAAGFNKLGLMRDDT+ E +DVKEAIRRLPE+LYNDR+
Sbjct: 1 MAGRSAVSASSKWLDGFRKWYYNAAGFNKLGLMRDDTLQETEDVKEAIRRLPEDLYNDRI 60
Query: 214 FRIKRALDLTMRQQILPKEQWTKYEEDKFYLEPYLKEVI 330
FRIKRALDLTM QILPK+ WTKYEEDKFYLEPYLKEVI
Sbjct: 61 FRIKRALDLTMMHQILPKDPWTKYEEDKFYLEPYLKEVI 99
>ref|XP_003086216.1| PREDICTED: cytochrome b-c1 complex subunit 7-like [Mus musculus].
Length = 111
Score = 178 bits (451), Expect = 5e-45
Identities = 84/99 (84%), Positives = 91/99 (91%)
Frame = +1
Query: 34 MASRPAVAASSKWLEGIRKWYYNAAGFNKLGLMRDDTIYEDDDVKEAIRRLPENLYNDRV 213
MA R AV+ASSKWL+G RKWYYNAAGFNKLGLMRDDT+ E +DVKEAIRRLPE+LYNDR+
Sbjct: 1 MAGRSAVSASSKWLDGFRKWYYNAAGFNKLGLMRDDTLQETEDVKEAIRRLPEDLYNDRM 60
Query: 214 FRIKRALDLTMRQQILPKEQWTKYEEDKFYLEPYLKEVI 330
FRIKRALDLTM QILPK+ WTKYEEDKFYLEPYLKEVI
Sbjct: 61 FRIKRALDLTMMHQILPKDPWTKYEEDKFYLEPYLKEVI 99
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 23,758,419
Number of extensions: 542145
Number of successful extensions: 1104
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1104
Number of HSP's successfully gapped: 3
Length of query: 279
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 179
Effective length of database: 12,613,959
Effective search space: 2257898661
Effective search space used: 2257898661
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003427
(837 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001172101.1| ubiquinol-cytochrome c reductase binding pro... 205 2e-53
>ref|NP_001172101.1| ubiquinol-cytochrome c reductase binding protein [Sus scrofa].
Length = 111
Score = 205 bits (522), Expect = 2e-53
Identities = 99/99 (100%), Positives = 99/99 (100%)
Frame = +1
Query: 34 MASRPAVAASSKWLEGIRKWYYNAAGFNKLGLMRDDTIYEDDDVKEAIRRLPENLYNDRV 213
MASRPAVAASSKWLEGIRKWYYNAAGFNKLGLMRDDTIYEDDDVKEAIRRLPENLYNDRV
Sbjct: 1 MASRPAVAASSKWLEGIRKWYYNAAGFNKLGLMRDDTIYEDDDVKEAIRRLPENLYNDRV 60
Query: 214 FRIKRALDLTMRQQILPKEQWTKYEEDKFYLEPYLKEVI 330
FRIKRALDLTMRQQILPKEQWTKYEEDKFYLEPYLKEVI
Sbjct: 61 FRIKRALDLTMRQQILPKEQWTKYEEDKFYLEPYLKEVI 99
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,683,101
Number of extensions: 588699
Number of successful extensions: 843
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 843
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 181
Effective length of database: 8,904,026
Effective search space: 1611628706
Effective search space used: 1611628706
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003427
(837 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 482 e-133
Sscrofa_Chr04 420 e-115
Sscrofa_Chr06 331 4e-88
Sscrofa_Chr03 309 1e-81
>Sscrofa_Chr13
|| Length = 218635234
Score = 482 bits (243), Expect = e-133
Identities = 327/355 (92%), Gaps = 5/355 (1%)
Strand = Plus / Plus
Query: 129 aatgcgagatgatacaatatatgaggatgacgatgtaaaagaagccataagaaggcttcc 188
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 38448882 aatgtgagatgatacaatatatgaggatgacgatgtaaaagaagccataaaaaggcttcc 38448941
Query: 189 tgagaacctttataacgacagggtgtttcgcattaagagagcactggacctgactatgag 248
||||||| |||||| |||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 38448942 tgagaacttttatattgacagggtgttttgcattaagagagcattggacctgactatgag 38449001
Query: 249 acagcagatcttgcctaaagagcagtggacaaaatatgaggaggataaattctaccttga 308
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 38449002 acagcagatcttgcctaaagagtagtggacaaaatgtgaggaggataaattctaccttga 38449061
Query: 309 accatatctgaaagaggttatccgggaaagaaaagaaagagaagaatgggcaaagaaata 368
||||||||||||||||||||| |||||||||||||| || ||| |||||||||| |
Sbjct: 38449062 accatatctgaaagaggttattcgggaaagaaaagagagcgaaaaatgggcaaa-----a 38449116
Query: 369 atcgtatagtctaaatctgtggatgcagcagtcgtcaaactatttttatgaacttggtta 428
||| | |||||||||||||||| || || | | |||||| ||||||||||||||||||||
Sbjct: 38449117 atcatgtagtctaaatctgtgggtgtagaaattgtcaaagtatttttatgaacttggtta 38449176
Query: 429 aacccgaaatgtacaatgtagacctatctgagctgtaaatgtattactttaaata 483
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38449177 aacctgaaatgtgcaatgtagacctatctgagctgtaaatgtattactttaaata 38449231
Score = 129 bits (65), Expect = 3e-27
Identities = 77/81 (95%)
Strand = Plus / Plus
Query: 20 ggtctcgggtcaaaatggcgagcaggcctgctgttgcagcatcaagcaagtggctggagg 79
||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 38448502 ggtcttgggtcaaaatggcgagcaggcctactgttgcaacatcaagcaagtggctggagg 38448561
Query: 80 gtatacgaaaatggtattata 100
|||||| ||||||||||||||
Sbjct: 38448562 gtatacaaaaatggtattata 38448582
Score = 65.9 bits (33), Expect = 3e-08
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 400 tcgtcaaactatttttatgaacttggttaaacccgaaatgtacaatgta 448
|||||||| |||||||||||| ||||||||||| ||||||||||||||
Sbjct: 93097638 tcgtcaaagtatttttatgaagttggttaaaccttaaatgtacaatgta 93097686
>Sscrofa_Chr04
|| Length = 143465943
Score = 420 bits (212), Expect = e-115
Identities = 212/212 (100%)
Strand = Plus / Minus
Query: 290 aggataaattctaccttgaaccatatctgaaagaggttatccgggaaagaaaagaaagag 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43631921 aggataaattctaccttgaaccatatctgaaagaggttatccgggaaagaaaagaaagag 43631862
Query: 350 aagaatgggcaaagaaataatcgtatagtctaaatctgtggatgcagcagtcgtcaaact 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43631861 aagaatgggcaaagaaataatcgtatagtctaaatctgtggatgcagcagtcgtcaaact 43631802
Query: 410 atttttatgaacttggttaaacccgaaatgtacaatgtagacctatctgagctgtaaatg 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43631801 atttttatgaacttggttaaacccgaaatgtacaatgtagacctatctgagctgtaaatg 43631742
Query: 470 tattactttaaataaatatctattataaatat 501
||||||||||||||||||||||||||||||||
Sbjct: 43631741 tattactttaaataaatatctattataaatat 43631710
Score = 95.6 bits (48), Expect = 4e-17
Identities = 51/52 (98%)
Strand = Plus / Plus
Query: 1 acccatcaggcaacgcttcggtctcgggtcaaaatggcgagcaggcctgctg 52
||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 43582200 acccatcaggcaacgcttctgtctcgggtcaaaatggcgagcaggcctgctg 43582251
>Sscrofa_Chr06
|| Length = 157765593
Score = 331 bits (167), Expect = 4e-88
Identities = 278/314 (88%), Gaps = 2/314 (0%)
Strand = Plus / Minus
Query: 36 ggcgagcaggcctgctgttgcagcatcaagcaagtggctggagggtatacgaaaatggta 95
|||||||||| ||||||||| || |||||| ||||||||||||||||||||||||| ||
Sbjct: 50906397 ggcgagcaggactgctgttgaagtgtcaagccagtggctggagggtatacgaaaatgcta 50906338
Query: 96 ttataatgccgccgggtttaataaactgggcttaatgcgagatgatacaatatatgagga 155
||| |||| ||| || | ||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 50906337 ttacgatgcggccaggctcaataaactgggctgaatgcgagatggtacaatat--gagga 50906280
Query: 156 tgacgatgtaaaagaagccataagaaggcttcctgagaacctttataacgacagggtgtt 215
|||| | || | |||||||| |||| ||||||||||||| ||||||||||||||||||||
Sbjct: 50906279 tgacaacgtgagagaagccagaagacggcttcctgagaagctttataacgacagggtgtt 50906220
Query: 216 tcgcattaagagagcactggacctgactatgagacagcagatcttgcctaaagagcagtg 275
||||||||||||||| |||| |||||| | |||||||||||||||||||||| |||||||
Sbjct: 50906219 tcgcattaagagagcgctggtcctgacaaagagacagcagatcttgcctaaaaagcagtg 50906160
Query: 276 gacaaaatatgaggaggataaattctaccttgaaccatatctgaaagaggttatccggga 335
|||||| || |||||||| |||| | ||||||||||||||||||||| |||||| |||||
Sbjct: 50906159 gacaaactacgaggaggacaaatcccaccttgaaccatatctgaaaggggttattcggga 50906100
Query: 336 aagaaaagaaagag 349
||||||||| ||||
Sbjct: 50906099 aagaaaagagagag 50906086
Score = 143 bits (72), Expect = 2e-31
Identities = 84/88 (95%)
Strand = Plus / Minus
Query: 409 tatttttatgaacttggttaaacccgaaatgtacaatgtagacctatctgagctgtaaat 468
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||
Sbjct: 50905738 tatttttatgaacttggttaaacccaaaatgtacagtgtagacctatctgagctgcaaat 50905679
Query: 469 gtattactttaaataaatatctattata 496
||||||||||||||||| ||||||||||
Sbjct: 50905678 gtattactttaaataaacatctattata 50905651
>Sscrofa_Chr03
|| Length = 144787322
Score = 309 bits (156), Expect = 1e-81
Identities = 300/346 (86%), Gaps = 4/346 (1%)
Strand = Plus / Plus
Query: 148 tatgaggatgacgatgtaaaagaagccataagaaggcttcctgagaacctttataacgac 207
||||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||| ||
Sbjct: 15810740 tatgaggatgatgatataaaagaagccataagaagactttctgagaacctttataatcac 15810799
Query: 208 agggtgtttcgcattaagagagcactggacctgactatgagacagcagatcttgcctaaa 267
||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct: 15810800 agggtgttttgcattaagagagcatcggacctgactatgagactgcggatcttgcctaaa 15810859
Query: 268 gagcagtggacaaaatatgaggaggataaattctaccttgaaccatatctgaaagaggtt 327
|||||| ||||||| || |||||||| |||||| ||||| ||||| ||| | |||||||
Sbjct: 15810860 gagcagcggacaaactacgaggaggagaaattccaccttaaaccacatccaagagaggtt 15810919
Query: 328 atccgggaaagaaaagaaagagaagaatgggcaaagaaataatcgtatagtctaaatctg 387
|| |||||||||||| |||| || |||||||||||||||||||||| |||||||||||
Sbjct: 15810920 atttgggaaagaaaagggagagcagcatgggcaaagaaataatcgtattgtctaaatctg 15810979
Query: 388 tggatgcagcagtcgtcaaactatttttatgaacttggttaaacccgaaatgtacaatg- 446
|||| |||| || |||||| |||||| | |||||||||||||||| ||||||||| ||
Sbjct: 15810980 cggatacagccgtggtcaaagtattttcacgaacttggttaaacccaaaatgtacactgc 15811039
Query: 447 --tagacctatctgagctgtaaatgtattactttaaataaatatct 490
||||| ||||| ||| |||| |||||||||||||||||||||
Sbjct: 15811040 aacagaccgatctg-gctacaaatatattactttaaataaatatct 15811084
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,357,753
Number of extensions: 428
Number of successful extensions: 428
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 9
Length of query: 837
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 816
Effective length of database: 2,808,413,156
Effective search space: 2291665135296
Effective search space used: 2291665135296
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)