Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003428
(1077 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001159956.1| mast/stem cell growth factor receptor [Bos t... 520 e-147
Alignment gi|NP_001068871.2| macrophage colony-stimulating factor 1 recep... 86 6e-17
Alignment gi|NP_001030378.1| platelet-derived growth factor receptor-like... 62 7e-10
Alignment gi|XP_002688539.1| PREDICTED: fms-related tyrosine kinase 4 [Bo... 57 3e-08
Alignment gi|NP_001069364.2| beta-type platelet-derived growth factor rec... 50 3e-06
Alignment gi|XP_002689337.1| PREDICTED: platelet-derived growth factor re... 50 3e-06
Alignment gi|XP_001790034.1| PREDICTED: platelet-derived growth factor re... 50 3e-06
>ref|NP_001159956.1| mast/stem cell growth factor receptor [Bos taurus].
Length = 977
Score = 520 bits (1338), Expect = e-147
Identities = 260/331 (78%), Positives = 274/331 (82%), Gaps = 1/331 (0%)
Frame = +1
Query: 88 WDXXXXXXXXXXXXTGXXXXXXXXXXXXXXXIHPAKSELIVSAGDEIRLFCTDPGSVKWT 267
WD TG IHPAKSELIVS GDEIRL CTDPG VKWT
Sbjct: 8 WDFLFVLLLLLLVQTGSSQPSVSPGELSLPSIHPAKSELIVSVGDEIRLLCTDPGFVKWT 67
Query: 268 FETLGQLSENTHAEWIVEKAEAMNTGNYTCTNEGGLSSSIYVFVRDPEKLFLVDPPLYGK 447
FE LGQLSE T+ EWI EKAEA NTGNYTCTN+GGLSSSIYVFVRDPEKLFL+D PLYGK
Sbjct: 68 FEILGQLSEKTNPEWITEKAEATNTGNYTCTNKGGLSSSIYVFVRDPEKLFLIDLPLYGK 127
Query: 448 EDNDALVRCPLTDPEVTNYSLTGCEGKPLPKDLTFVADPKAGITIRNVKREYHRLCLHCS 627
E+ND LVRCPLTDPEVTNYSLTGCEGKPLPKDLTFVADPKAGITIRNVKREYHRLCLHCS
Sbjct: 128 EENDTLVRCPLTDPEVTNYSLTGCEGKPLPKDLTFVADPKAGITIRNVKREYHRLCLHCS 187
Query: 628 ANQGGKSVLSKKFTLKXXXXXXXXXXXXXSKASYLLREGEEFAVMCLIKDVSSSVDSMWI 807
ANQ GKS+LSKKFTLK SK SYLLREGEEFAV CLIKDVSSSVDSMWI
Sbjct: 188 ANQRGKSMLSKKFTLKVRAAIKAVPVVSVSKTSYLLREGEEFAVTCLIKDVSSSVDSMWI 247
Query: 808 RENS-QTKAQVKRNSWHQGDFHFLRQERLTISSARVNDSGVFMCYADNTFGSANVPTTLE 984
+ENS QTKAQ+K+NSWHQGDF +LRQERLTISSARVNDSGVFMCYA+NTFGSANV TTLE
Sbjct: 248 KENSQQTKAQMKKNSWHQGDFSYLRQERLTISSARVNDSGVFMCYANNTFGSANVTTTLE 307
Query: 985 VVHKGFINIFPMMNTTVFVHDGDDVDLIVEY 1077
VV KGFINIFPMMNTTVFV+DG++VDL+VEY
Sbjct: 308 VVDKGFINIFPMMNTTVFVNDGENVDLVVEY 338
>ref|NP_001068871.2| macrophage colony-stimulating factor 1 receptor [Bos taurus].
Length = 964
Score = 85.9 bits (211), Expect = 6e-17
Identities = 80/315 (25%), Positives = 130/315 (41%), Gaps = 17/315 (5%)
Frame = +1
Query: 181 IHPAKSELIVSAGDEIRLFCTDPGSVKW-----TFETLGQLSENTHAEWIVEKAEAMNTG 345
I P+ EL+V G + L CT GSVKW + TL S+ + A ++TG
Sbjct: 23 IEPSGPELVVEPGTAVTLRCTSNGSVKWDGPVSPYWTLD--SDAPRSILTTNNATFLHTG 80
Query: 346 NYTCTNEG---GLSSSIYVFVRDPEKLF-LVDPPLYGKEDNDALVRCPLTDPEV-TNYSL 510
Y CT G +++I+++V+DP + + ++ + E DAL+ C LTDP + SL
Sbjct: 81 TYRCTEPGDPLAGTATIHLYVKDPARPWRVLAEEVTVLEGQDALLPCLLTDPALEAGVSL 140
Query: 511 TGCEGKPLPKDLTFVADPKAGITIRNVK----REYHRLCLHCSANQGGKSVLSKKFTLKX 678
G+ + + ++ P G TI K ++Y CS G+ V S LK
Sbjct: 141 VRVRGRSVLRQTSYSFSPWYGFTIHKAKFIESQDY-----ECSVRVAGRVVKSLSIRLKV 195
Query: 679 XXXXXXXXXXXXSKASYLLREGEEFAVMCLIKDVSSSVDSMWIRENSQTKAQVKRNSWHQ 858
+ +GE ++C DV + D + TK + + Q
Sbjct: 196 QKVIPGPPTLTLEPEELVRIQGETAKIVCSASDVDVNFDV--FLQRGDTKLAISQ----Q 249
Query: 859 GDFHFLRQER---LTISSARVNDSGVFMCYADNTFGSANVPTTLEVVHKGFINIFPMMNT 1029
DF R ++ L + D+G + C A N G VV ++N+ N
Sbjct: 250 SDFRDNRYQKVLTLELDHVGFQDAGNYTCVATNARGVHTTSMVFRVVDSAYLNLTSEQNL 309
Query: 1030 TVFVHDGDDVDLIVE 1074
V G+ ++L V+
Sbjct: 310 LQEVAVGEKLELRVK 324
>ref|NP_001030378.1| platelet-derived growth factor receptor-like protein precursor [Bos
taurus].
Length = 375
Score = 62.4 bits (150), Expect = 7e-10
Identities = 57/224 (25%), Positives = 94/224 (41%), Gaps = 12/224 (5%)
Frame = +1
Query: 349 YTCTNEGGLSSSIYVFVRDPEKLFLVDPP----LYGKEDNDALVRCPLTDPEVTNYSLTG 516
Y C + + S Y+F + +LF+ P +Y D A+V C +T
Sbjct: 151 YVCRRDEAKTGSTYIFFTEKGELFVPSPSHFDVVYLNPDRQAVVPCRVTVLSAKVTLHRE 210
Query: 517 CEGKPLPKDLT-FVADPKAGITIRNVKREYHRLCLHCSANQGGKSVLSKKFTLKXXXXXX 693
K +P + T V D K G H+ ++C A GGKS +S K+ L
Sbjct: 211 FPAKEIPANGTDIVYDLKRGFVYLQ-PHVGHQGVVYCKAEAGGKSQISVKYQLLYAEVPR 269
Query: 694 XXXXXXXSKASYLLREGEEFAVMC-LIKDVSSSVDSMWIRENSQTKAQVK-RNSW---HQ 858
+S ++ G++ +V+C ++ + V+ W + + V ++SW H+
Sbjct: 270 GPPSTTILASSNKVKGGDDVSVLCTVLGEPDVEVEFRWTYPGQKDERPVTIQDSWRLIHR 329
Query: 859 GDFHFLR--QERLTISSARVNDSGVFMCYADNTFGSANVPTTLE 984
G H R Q L+I D+G ++C A N G V TT+E
Sbjct: 330 GLGHTTRISQSVLSIEDFETIDAGYYICTAQNLQGQTTVATTVE 373
>ref|XP_002688539.1| PREDICTED: fms-related tyrosine kinase 4 [Bos taurus].
Length = 1369
Score = 57.0 bits (136), Expect = 3e-08
Identities = 64/261 (24%), Positives = 103/261 (39%), Gaps = 13/261 (4%)
Frame = +1
Query: 316 VEKAEAMNTGNYTCTN-------EGGLSSSIYVFVRDPEKLFLVDP-PLYGKEDNDALVR 471
+++A A NTG+Y C EG ++S YVFVRD E+ F+ P L + V
Sbjct: 158 LQEAHANNTGSYRCYYKYIKARIEGTTAASTYVFVRDWEQPFINKPDTLLVNRKDSTWVP 217
Query: 472 CPLTDPEVTNYSLTGCEGKPLPKDLTFVADPKAGITIRNVKREYHRLCLHCSANQGGKSV 651
C ++ P + N +L P V D + G+ + L L C GG++
Sbjct: 218 CLVSIPGL-NVTLRSQSSALQPDGQEVVWDDRRGMRVPTPLLR-DALYLQCETTWGGQAF 275
Query: 652 LSKKFTLKXXXXXXXXXXXXXSKASYLLREGEEFAVMCLI-KDVSSSVDSMWIRENSQTK 828
LS F + ++ LL GE+ + C + + +S V W +
Sbjct: 276 LSNPFVVHITGNELYDIQLFPKRSLELL-VGEKLVLNCTVWAEFNSGVTFDW----NYPG 330
Query: 829 AQVKRNSW----HQGDFHFLRQERLTISSARVNDSGVFMCYADNTFGSANVPTTLEVVHK 996
Q +R W H LTI + D G ++C A+N T + V K
Sbjct: 331 KQAERGKWVPERRSQQTHTELSSILTIHNVSQRDLGPYVCQANNGIQQFQESTEVIVHEK 390
Query: 997 GFINIFPMMNTTVFVHDGDDV 1059
FI++ + + GD++
Sbjct: 391 PFISVEWLKGPVLEATAGDEL 411
>ref|NP_001069364.2| beta-type platelet-derived growth factor receptor [Bos taurus].
Length = 1103
Score = 50.1 bits (118), Expect = 3e-06
Identities = 64/305 (20%), Positives = 115/305 (37%), Gaps = 19/305 (6%)
Frame = +1
Query: 181 IHPAKSELIVSAGDEIRLFCTDPGSVKWTFETLGQLSENTHAE-------WIVEKAEAMN 339
I P EL+++ L C+ P V W + E T + + ++
Sbjct: 35 IIPPGPELVLNLSSTFVLTCSGPAPVVWERMSQKPPQEMTETQDGTFSSVLTLVNVTGLD 94
Query: 340 TGNYTC--TNEGGLSSS----IYVFVRDPEKLFL-VDPP---LYGKEDNDALVRCPLTDP 489
TG Y C GL +S +Y+FV DP FL VDP ++ E + + C +TDP
Sbjct: 95 TGEYFCGYKRSHGLEASERKRLYIFVPDPSVGFLPVDPEELFIFLTEITETTIPCRVTDP 154
Query: 490 EVTNYSLTGCEGKPLPKDLTFVADPKAGITIRNVKREYHRLCLHCSANQGGKSVLSKKFT 669
+ + K + L DP+ G + + Y C G + V S +
Sbjct: 155 RL----VVMLHEKKVDVPLPIAYDPQRGFSGTFEDKTY-----ICKTTIGDREVDSDAYH 205
Query: 670 LKXXXXXXXXXXXXXSKASYLLREGEEFAVMCLIKDVSSSVDSMWIRENSQTKAQVKRNS 849
+ + ++R+GE +MC++ + V+ W ++ V+ +
Sbjct: 206 V--YSLQVSSINVSVNAVQTVVRQGENITIMCIVTG-NEVVNFEWTYPRMESGRLVEPVT 262
Query: 850 WHQGDFHFLRQERLTISSARVNDSGVFMCYADNTFGSANVPTTLE--VVHKGFINIFPMM 1023
+ +R L I SA + DSG ++C + + VV G++ + +
Sbjct: 263 DFLFEMPHIR-SILHIPSAELGDSGTYICNVSESVSDHRDEKAINVTVVENGYVRLLGEL 321
Query: 1024 NTTVF 1038
+ F
Sbjct: 322 DPVQF 326
>ref|XP_002689337.1| PREDICTED: platelet-derived growth factor receptor, beta polypeptide
[Bos taurus].
Length = 1103
Score = 50.1 bits (118), Expect = 3e-06
Identities = 64/305 (20%), Positives = 115/305 (37%), Gaps = 19/305 (6%)
Frame = +1
Query: 181 IHPAKSELIVSAGDEIRLFCTDPGSVKWTFETLGQLSENTHAE-------WIVEKAEAMN 339
I P EL+++ L C+ P V W + E T + + ++
Sbjct: 35 IIPPGPELVLNLSSTFVLTCSGPAPVVWERMSQKPPQEMTETQDGTFSSVLTLVNVTGLD 94
Query: 340 TGNYTC--TNEGGLSSS----IYVFVRDPEKLFL-VDPP---LYGKEDNDALVRCPLTDP 489
TG Y C GL +S +Y+FV DP FL VDP ++ E + + C +TDP
Sbjct: 95 TGEYFCGYKRSHGLEASERKRLYIFVPDPSVGFLPVDPEELFIFLTEITETTIPCRVTDP 154
Query: 490 EVTNYSLTGCEGKPLPKDLTFVADPKAGITIRNVKREYHRLCLHCSANQGGKSVLSKKFT 669
+ + K + L DP+ G + + Y C G + V S +
Sbjct: 155 RL----VVMLHEKKVDVPLPIAYDPQRGFSGTFEDKTY-----ICKTTIGDREVDSDAYH 205
Query: 670 LKXXXXXXXXXXXXXSKASYLLREGEEFAVMCLIKDVSSSVDSMWIRENSQTKAQVKRNS 849
+ + ++R+GE +MC++ + V+ W ++ V+ +
Sbjct: 206 V--YSLQVSSINVSVNAVQTVVRQGENITIMCIVTG-NEVVNFEWTYPRMESGRLVEPVT 262
Query: 850 WHQGDFHFLRQERLTISSARVNDSGVFMCYADNTFGSANVPTTLE--VVHKGFINIFPMM 1023
+ +R L I SA + DSG ++C + + VV G++ + +
Sbjct: 263 DFLFEMPHIR-SILHIPSAELGDSGTYICNVSESVSDHRDEKAINVTVVENGYVRLLGEL 321
Query: 1024 NTTVF 1038
+ F
Sbjct: 322 DPVQF 326
>ref|XP_001790034.1| PREDICTED: platelet-derived growth factor receptor beta [Bos taurus].
Length = 1103
Score = 50.1 bits (118), Expect = 3e-06
Identities = 64/305 (20%), Positives = 115/305 (37%), Gaps = 19/305 (6%)
Frame = +1
Query: 181 IHPAKSELIVSAGDEIRLFCTDPGSVKWTFETLGQLSENTHAE-------WIVEKAEAMN 339
I P EL+++ L C+ P V W + E T + + ++
Sbjct: 35 IIPPGPELVLNLSSTFVLTCSGPAPVVWERMSQKPPQEMTETQDGTFSSVLTLVNVTGLD 94
Query: 340 TGNYTC--TNEGGLSSS----IYVFVRDPEKLFL-VDPP---LYGKEDNDALVRCPLTDP 489
TG Y C GL +S +Y+FV DP FL VDP ++ E + + C +TDP
Sbjct: 95 TGEYFCGYKRSHGLEASERKRLYIFVPDPSVGFLPVDPEELFIFLTEITETTIPCRVTDP 154
Query: 490 EVTNYSLTGCEGKPLPKDLTFVADPKAGITIRNVKREYHRLCLHCSANQGGKSVLSKKFT 669
+ + K + L DP+ G + + Y C G + V S +
Sbjct: 155 RL----VVMLHEKKVDVPLPIAYDPQRGFSGTFEDKTY-----ICKTTIGDREVDSDAYH 205
Query: 670 LKXXXXXXXXXXXXXSKASYLLREGEEFAVMCLIKDVSSSVDSMWIRENSQTKAQVKRNS 849
+ + ++R+GE +MC++ + V+ W ++ V+ +
Sbjct: 206 V--YSLQVSSINVSVNAVQTVVRQGENITIMCIVTG-NEVVNFEWTYPRMESGRLVEPVT 262
Query: 850 WHQGDFHFLRQERLTISSARVNDSGVFMCYADNTFGSANVPTTLE--VVHKGFINIFPMM 1023
+ +R L I SA + DSG ++C + + VV G++ + +
Sbjct: 263 DFLFEMPHIR-SILHIPSAELGDSGTYICNVSESVSDHRDEKAINVTVVENGYVRLLGEL 321
Query: 1024 NTTVF 1038
+ F
Sbjct: 322 DPVQF 326
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.317 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,646,837
Number of extensions: 1111020
Number of successful extensions: 4414
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4389
Number of HSP's successfully gapped: 7
Length of query: 359
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 256
Effective length of database: 14,273,310
Effective search space: 3653967360
Effective search space used: 3653967360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003428
(1077 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003181.1| mast/stem cell growth factor receptor [Canis... 484 e-137
Alignment gi|XP_546306.2| PREDICTED: similar to colony stimulating factor... 94 2e-19
Alignment gi|XP_538585.2| PREDICTED: similar to fms-related tyrosine kina... 59 6e-09
Alignment gi|NP_001003382.1| beta-type platelet-derived growth factor rec... 52 1e-06
>ref|NP_001003181.1| mast/stem cell growth factor receptor [Canis lupus familiaris].
Length = 975
Score = 484 bits (1245), Expect = e-137
Identities = 240/300 (80%), Positives = 257/300 (85%), Gaps = 1/300 (0%)
Frame = +1
Query: 181 IHPAKSELIVSAGDEIRLFCTDPGSVKWTFETLGQLSENTHAEWIVEKAEAMNTGNYTCT 360
IHPAKSELIVS GDE+RL CTDPG VKWTFETLGQL+ENTH EWI EKAEA +TGNYTCT
Sbjct: 41 IHPAKSELIVSVGDELRLSCTDPGFVKWTFETLGQLNENTHNEWITEKAEAGHTGNYTCT 100
Query: 361 NEGGLSSSIYVFVRDPEKLFLVDPPLYGKEDNDALVRCPLTDPEVTNYSLTGCEGKPLPK 540
N GLS SIYVFVRDP KLFLVD PLYGKE ND LVRCPLTDPEVTNYSL GCEGKPLPK
Sbjct: 101 NRDGLSRSIYVFVRDPAKLFLVDLPLYGKEGNDTLVRCPLTDPEVTNYSLRGCEGKPLPK 160
Query: 541 DLTFVADPKAGITIRNVKREYHRLCLHCSANQGGKSVLSKKFTLKXXXXXXXXXXXXXSK 720
DLTFVADPKAGITIRNVKREYHRLCLHCSA+Q G++VLSKKFTLK SK
Sbjct: 161 DLTFVADPKAGITIRNVKREYHRLCLHCSADQKGRTVLSKKFTLKVRAAIRAVPVVSVSK 220
Query: 721 ASYLLREGEEFAVMCLIKDVSSSVDSMWIRENS-QTKAQVKRNSWHQGDFHFLRQERLTI 897
S LL+EGE F+VMC IKDVSS VDSMWI+ENS QT AQ + NSWH GDF+F RQE+L I
Sbjct: 221 TSSLLKEGEAFSVMCFIKDVSSFVDSMWIKENSQQTNAQTQSNSWHHGDFNFERQEKLII 280
Query: 898 SSARVNDSGVFMCYADNTFGSANVPTTLEVVHKGFINIFPMMNTTVFVHDGDDVDLIVEY 1077
SSARVNDSGVFMCYA+NTFGSANV TTLEVV KGFINIFPMM+TT+FV+DG +VDLIVEY
Sbjct: 281 SSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMMSTTIFVNDGQNVDLIVEY 340
>ref|XP_546306.2| PREDICTED: similar to colony stimulating factor 1 receptor precursor
[Canis familiaris].
Length = 967
Score = 94.0 bits (232), Expect = 2e-19
Identities = 86/312 (27%), Positives = 135/312 (43%), Gaps = 14/312 (4%)
Frame = +1
Query: 181 IHPAKSELIVSAGDEIRLFCTDPGSVKWTFETLGQLSENTHAE-------WIVEKAEAMN 339
I P EL+V G + L C GSV+W G +S + + + A +N
Sbjct: 23 IEPRGPELVVEPGTAVTLRCVGNGSVEWE----GPISPHWNLDPDSPSSILSTNNATFLN 78
Query: 340 TGNYTCTNEG---GLSSSIYVFVRDPEKLFLV-DPPLYGKEDNDALVRCPLTDPEV-TNY 504
TG Y CT G G S++I+++V+DP + + V + E DAL+ C LTDP +
Sbjct: 79 TGTYRCTEPGSPLGGSATIHIYVKDPVRPWKVLTQEVTVLEGQDALLPCLLTDPALEAGV 138
Query: 505 SLTGCEGKPLPKDLTFVADPKAGITIRNVKREYHRLCLHCSANQGGKSVLSKKFTLKXXX 684
SL G+P+ + + P G TI + + CSA GG++V S LK
Sbjct: 139 SLMRVRGRPVLRQTNYSFSPWYGFTIHKAQFTETQ-GYQCSARVGGRTVTSMGIWLKVQK 197
Query: 685 XXXXXXXXXXSKASYLLREGEEFAVMCLIKDVSSSVDSMWIRENSQTKAQVKRNSWHQGD 864
A + +GE + C +V + D E+ TK + + S QG+
Sbjct: 198 VIPGPPTLTLKPAELVRIQGEAANIECSASNVDVNFDVFLQHED--TKLTIPQQSDFQGN 255
Query: 865 FHFLRQERLTISSARVN--DSGVFMCYADNTFGSANVPTTLEVVHKGFINIFPMMNTTVF 1038
+ Q+ LT+ V D+G + C A N G ++ VV ++N+ +
Sbjct: 256 QY---QKVLTLELDHVGFQDAGNYTCVATNVRGISSTSMIFRVVESAYLNLTSEQSLLQE 312
Query: 1039 VHDGDDVDLIVE 1074
V G+ VDL V+
Sbjct: 313 VTVGEKVDLQVK 324
>ref|XP_538585.2| PREDICTED: similar to fms-related tyrosine kinase 4 isoform 1 [Canis
familiaris].
Length = 1362
Score = 59.3 bits (142), Expect = 6e-09
Identities = 76/319 (23%), Positives = 123/319 (38%), Gaps = 34/319 (10%)
Frame = +1
Query: 205 IVSAGDEIRLFCTDPGSVKWTF--------------ETLG--QLSENTHAE-----WIVE 321
I+ +GD + + C ++W++ E +G Q E T ++
Sbjct: 40 IIDSGDSLSISCRGQHPLEWSWPGAQEMPATREKDGEDMGVVQDCEGTDTRPYCKVLLLP 99
Query: 322 KAEAMNTGNYTCTN-------EGGLSSSIYVFVRDPEKLFLVDPPLYGKEDNDAL-VRCP 477
+A A NTG+Y C EG ++S YVFVRD E+ F+ P D++ V C
Sbjct: 100 EAHANNTGSYRCYYKYIKARIEGTTAASTYVFVRDLEQPFINKPDTLLVNRKDSMWVPCL 159
Query: 478 LTDPEVTNYSLTGCEGKPLPKDLTFVADPKAGITIRNVKREYHRLCLHCSANQGGKSVLS 657
++ P + N +L P V D + G+ + L L C GG++ LS
Sbjct: 160 VSFPGL-NITLRSQNLALQPDGQELVWDDRRGMRVPTPLLR-DALYLQCETTWGGQAFLS 217
Query: 658 KKFTLKXXXXXXXXXXXXXSKASYLLREGEEFAVMCLI-KDVSSSVDSMWIRENSQTKAQ 834
F + K+ LL GE+ + C + + +S V W Q
Sbjct: 218 NPFLVHITGNELYDIQLFPKKSLELL-VGEKLVLNCTVWAEFNSGVTFDW----DYPGKQ 272
Query: 835 VKRNSW----HQGDFHFLRQERLTISSARVNDSGVFMCYADNTFGSANVPTTLEVVHKGF 1002
+R W H LTI + ND G ++C A+N T + V K F
Sbjct: 273 AERGKWVPERRSQQTHTELSSILTIYNVSQNDLGPYVCEANNGIQRFRESTEVIVHEKPF 332
Query: 1003 INIFPMMNTTVFVHDGDDV 1059
I++ + + GD++
Sbjct: 333 ISVEWLKGPVLEATAGDEL 351
>ref|NP_001003382.1| beta-type platelet-derived growth factor receptor precursor [Canis
lupus familiaris].
Length = 1103
Score = 52.0 bits (123), Expect = 1e-06
Identities = 63/305 (20%), Positives = 119/305 (39%), Gaps = 19/305 (6%)
Frame = +1
Query: 181 IHPAKSELIVSAGDEIRLFCTDPGSVKW------TFETLGQLSENTHAEWI-VEKAEAMN 339
I P EL+++ L C+ P V W + + + + T + + + ++
Sbjct: 35 ITPPGPELVLNISSTFVLTCSGPAPVVWERLSQEPLQKMARTQDGTFSSTLTLTNVTGLD 94
Query: 340 TGNYTCTNEG--GLS----SSIYVFVRDPEKLFL-VDPP---LYGKEDNDALVRCPLTDP 489
TG Y CT +G GL +Y+FV DP FL VDP ++ E + + C +TDP
Sbjct: 95 TGEYFCTYKGSHGLEPDGRKRLYIFVPDPTMGFLPVDPEELFIFLTEITEITIPCRVTDP 154
Query: 490 EVTNYSLTGCEGKPLPKDLTFVADPKAGITIRNVKREYHRLCLHCSANQGGKSVLSKKFT 669
+ + K + L D + G + + Y C G K V S+ +
Sbjct: 155 RL----VVTLHEKKVDIPLPIPYDHQRGFSGTFEDKTY-----VCKTTIGDKEVDSEAYY 205
Query: 670 LKXXXXXXXXXXXXXSKASYLLREGEEFAVMCLIKDVSSSVDSMWIRENSQTKAQVKRNS 849
+ + ++R+GE +MC++ + V+ W ++ V+ +
Sbjct: 206 V--YSLQVSSINVSVNAVQTVVRQGENITIMCIVTG-NEVVNFEWTYPRMESGRLVEPVT 262
Query: 850 WHQGDFHFLRQERLTISSARVNDSGVFMCYADNTFGSANVPTTLE--VVHKGFINIFPMM 1023
+ + L I SA + DSG ++C + ++ VV G++ + +
Sbjct: 263 DFLFNVPSHIRSILHIPSAELGDSGTYICNVSESVNDHRDEKSINVTVVESGYVRLLGEL 322
Query: 1024 NTTVF 1038
+ F
Sbjct: 323 DAVQF 327
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.317 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,486,280
Number of extensions: 1149637
Number of successful extensions: 4197
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4179
Number of HSP's successfully gapped: 4
Length of query: 359
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 255
Effective length of database: 15,407,560
Effective search space: 3928927800
Effective search space used: 3928927800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003428
(1077 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001087241.1| mast/stem cell growth factor receptor isofor... 457 e-128
Alignment gi|NP_000213.1| mast/stem cell growth factor receptor isoform 1... 457 e-128
Alignment gi|NP_005202.2| macrophage colony-stimulating factor 1 receptor... 98 1e-20
Alignment gi|NP_006198.1| platelet-derived growth factor receptor-like pr... 65 8e-11
Alignment gi|NP_891555.2| vascular endothelial growth factor receptor 3 i... 51 2e-06
Alignment gi|NP_002011.2| vascular endothelial growth factor receptor 3 i... 51 2e-06
>ref|NP_001087241.1| mast/stem cell growth factor receptor isoform 2 precursor [Homo
sapiens].
Length = 972
Score = 457 bits (1175), Expect = e-128
Identities = 230/330 (69%), Positives = 248/330 (75%)
Frame = +1
Query: 88 WDXXXXXXXXXXXXTGXXXXXXXXXXXXXXXIHPAKSELIVSAGDEIRLFCTDPGSVKWT 267
WD TG IHP KS+LIV GDEIRL CTDPG VKWT
Sbjct: 8 WDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGFVKWT 67
Query: 268 FETLGQLSENTHAEWIVEKAEAMNTGNYTCTNEGGLSSSIYVFVRDPEKLFLVDPPLYGK 447
FE L + +EN EWI EKAEA NTG YTCTN+ GLS+SIYVFVRDP KLFLVD LYGK
Sbjct: 68 FEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGK 127
Query: 448 EDNDALVRCPLTDPEVTNYSLTGCEGKPLPKDLTFVADPKAGITIRNVKREYHRLCLHCS 627
EDND LVRCPLTDPEVTNYSL GC+GKPLPKDL F+ DPKAGI I++VKR YHRLCLHCS
Sbjct: 128 EDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCS 187
Query: 628 ANQGGKSVLSKKFTLKXXXXXXXXXXXXXSKASYLLREGEEFAVMCLIKDVSSSVDSMWI 807
+Q GKSVLS+KF LK SKASYLLREGEEF V C IKDVSSSV S W
Sbjct: 188 VDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWK 247
Query: 808 RENSQTKAQVKRNSWHQGDFHFLRQERLTISSARVNDSGVFMCYADNTFGSANVPTTLEV 987
RENSQTK Q K NSWH GDF++ RQ LTISSARVNDSGVFMCYA+NTFGSANV TTLEV
Sbjct: 248 RENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEV 307
Query: 988 VHKGFINIFPMMNTTVFVHDGDDVDLIVEY 1077
V KGFINIFPM+NTTVFV+DG++VDLIVEY
Sbjct: 308 VDKGFINIFPMINTTVFVNDGENVDLIVEY 337
>ref|NP_000213.1| mast/stem cell growth factor receptor isoform 1 precursor [Homo
sapiens].
Length = 976
Score = 457 bits (1175), Expect = e-128
Identities = 230/330 (69%), Positives = 248/330 (75%)
Frame = +1
Query: 88 WDXXXXXXXXXXXXTGXXXXXXXXXXXXXXXIHPAKSELIVSAGDEIRLFCTDPGSVKWT 267
WD TG IHP KS+LIV GDEIRL CTDPG VKWT
Sbjct: 8 WDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGFVKWT 67
Query: 268 FETLGQLSENTHAEWIVEKAEAMNTGNYTCTNEGGLSSSIYVFVRDPEKLFLVDPPLYGK 447
FE L + +EN EWI EKAEA NTG YTCTN+ GLS+SIYVFVRDP KLFLVD LYGK
Sbjct: 68 FEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGK 127
Query: 448 EDNDALVRCPLTDPEVTNYSLTGCEGKPLPKDLTFVADPKAGITIRNVKREYHRLCLHCS 627
EDND LVRCPLTDPEVTNYSL GC+GKPLPKDL F+ DPKAGI I++VKR YHRLCLHCS
Sbjct: 128 EDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCS 187
Query: 628 ANQGGKSVLSKKFTLKXXXXXXXXXXXXXSKASYLLREGEEFAVMCLIKDVSSSVDSMWI 807
+Q GKSVLS+KF LK SKASYLLREGEEF V C IKDVSSSV S W
Sbjct: 188 VDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWK 247
Query: 808 RENSQTKAQVKRNSWHQGDFHFLRQERLTISSARVNDSGVFMCYADNTFGSANVPTTLEV 987
RENSQTK Q K NSWH GDF++ RQ LTISSARVNDSGVFMCYA+NTFGSANV TTLEV
Sbjct: 248 RENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEV 307
Query: 988 VHKGFINIFPMMNTTVFVHDGDDVDLIVEY 1077
V KGFINIFPM+NTTVFV+DG++VDLIVEY
Sbjct: 308 VDKGFINIFPMINTTVFVNDGENVDLIVEY 337
>ref|NP_005202.2| macrophage colony-stimulating factor 1 receptor precursor [Homo
sapiens].
Length = 972
Score = 97.8 bits (242), Expect = 1e-20
Identities = 85/312 (27%), Positives = 135/312 (43%), Gaps = 15/312 (4%)
Frame = +1
Query: 181 IHPAKSELIVSAGDEIRLFCTDPGSVKWTFETLGQ---LSENTHAEWIVEKAEAMNTGNY 351
I P+ EL+V G + L C GSV+W S+ + + A NTG Y
Sbjct: 23 IEPSVPELVVKPGATVTLRCVGNGSVEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTY 82
Query: 352 TCTNEG---GLSSSIYVFVRDPEKLF-LVDPPLYGKEDNDALVRCPLTDPEV-TNYSLTG 516
CT G G S++I+++V+DP + + ++ + ED DAL+ C LTDP + SL
Sbjct: 83 RCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVR 142
Query: 517 CEGKPLPKDLTFVADPKAGITIRNVK----REYHRLCLHCSANQGGKSVLSKKFTLKXXX 684
G+PL + + P G TI K ++Y CSA GG+ V+S LK
Sbjct: 143 VRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDY-----QCSALMGGRKVMSISIRLKVQK 197
Query: 685 XXXXXXXXXXSKASYLLREGEEFAVMCLIKDVSSSVDSMWIRENSQTKAQVKRNSWHQGD 864
A + GE ++C V + D ++++ N+ TK + + Q D
Sbjct: 198 VIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFD-VFLQHNN-TKLAIPQ----QSD 251
Query: 865 FHFLRQER---LTISSARVNDSGVFMCYADNTFGSANVPTTLEVVHKGFINIFPMMNTTV 1035
FH R ++ L + +G + C A N G + VV ++N+ N
Sbjct: 252 FHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAYLNLSSEQNLIQ 311
Query: 1036 FVHDGDDVDLIV 1071
V G+ ++L V
Sbjct: 312 EVTVGEGLNLKV 323
>ref|NP_006198.1| platelet-derived growth factor receptor-like protein precursor
[Homo sapiens].
Length = 375
Score = 65.5 bits (158), Expect = 8e-11
Identities = 56/224 (25%), Positives = 96/224 (42%), Gaps = 12/224 (5%)
Frame = +1
Query: 349 YTCTNEGGLSSSIYVFVRDPEKLFLVDPP----LYGKEDNDALVRCPLTDPEVTNYSLTG 516
Y C + + S Y+F + +LF+ P +Y D A+V C +T
Sbjct: 151 YICRKDEAKTGSTYIFFTEKGELFVPSPSYFDVVYLNPDRQAVVPCRVTVLSAKVTLHRE 210
Query: 517 CEGKPLPKDLT-FVADPKAGITIRNVKREYHRLCLHCSANQGGKSVLSKKFTLKXXXXXX 693
K +P + T V D K G E H+ ++C A GG+S +S K+ L
Sbjct: 211 FPAKEIPANGTDIVYDMKRGFVYLQPHSE-HQGVVYCRAEAGGRSQISVKYQLLYVAVPS 269
Query: 694 XXXXXXXSKASYLLREGEEFAVMC-LIKDVSSSVDSMWIRENSQTKAQVK-RNSW---HQ 858
+S ++ G++ +V+C ++ + V+ WI + + V +++W H+
Sbjct: 270 GPPSTTILASSNKVKSGDDISVLCTVLGEPDVEVEFTWIFPGQKDERPVTIQDTWRLIHR 329
Query: 859 GDFHFLR--QERLTISSARVNDSGVFMCYADNTFGSANVPTTLE 984
G H R Q +T+ D+G ++C A N G V TT+E
Sbjct: 330 GLGHTTRISQSVITVEDFETIDAGYYICTAQNLQGQTTVATTVE 373
>ref|NP_891555.2| vascular endothelial growth factor receptor 3 isoform 1 precursor
[Homo sapiens].
Length = 1363
Score = 50.8 bits (120), Expect = 2e-06
Identities = 62/262 (23%), Positives = 102/262 (38%), Gaps = 13/262 (4%)
Frame = +1
Query: 313 IVEKAEAMNTGNYTCTN-------EGGLSSSIYVFVRDPEKLFLVDPPLYGKEDNDAL-V 468
++ + A +TG+Y C EG ++S YVFVRD E+ F+ P DA+ V
Sbjct: 97 LLHEVHANDTGSYVCYYKYIKARIEGTTAASSYVFVRDFEQPFINKPDTLLVNRKDAMWV 156
Query: 469 RCPLTDPEVTNYSLTGCEGKPLPKDLTFVADPKAGITIRNVKREYHRLCLHCSANQGGKS 648
C ++ P + N +L P V D + G+ + + + L L C G +
Sbjct: 157 PCLVSIPGL-NVTLRSQSSVLWPDGQEVVWDDRRGMLV-STPLLHDALYLQCETTWGDQD 214
Query: 649 VLSKKFTLKXXXXXXXXXXXXXSKASYLLREGEEFAVMCLI-KDVSSSVDSMWIRENSQT 825
LS F + K+ LL GE+ + C + + +S V W
Sbjct: 215 FLSNPFLVHITGNELYDIQLLPRKSLELL-VGEKLVLNCTVWAEFNSGVTFDW----DYP 269
Query: 826 KAQVKRNSW----HQGDFHFLRQERLTISSARVNDSGVFMCYADNTFGSANVPTTLEVVH 993
Q +R W H LTI + +D G ++C A+N T + V
Sbjct: 270 GKQAERGKWVPERRSQQTHTELSSILTIHNVSQHDLGSYVCKANNGIQRFRESTEVIVHE 329
Query: 994 KGFINIFPMMNTTVFVHDGDDV 1059
FI++ + + GD++
Sbjct: 330 NPFISVEWLKGPILEATAGDEL 351
>ref|NP_002011.2| vascular endothelial growth factor receptor 3 isoform 2 precursor
[Homo sapiens].
Length = 1298
Score = 50.8 bits (120), Expect = 2e-06
Identities = 62/262 (23%), Positives = 102/262 (38%), Gaps = 13/262 (4%)
Frame = +1
Query: 313 IVEKAEAMNTGNYTCTN-------EGGLSSSIYVFVRDPEKLFLVDPPLYGKEDNDAL-V 468
++ + A +TG+Y C EG ++S YVFVRD E+ F+ P DA+ V
Sbjct: 97 LLHEVHANDTGSYVCYYKYIKARIEGTTAASSYVFVRDFEQPFINKPDTLLVNRKDAMWV 156
Query: 469 RCPLTDPEVTNYSLTGCEGKPLPKDLTFVADPKAGITIRNVKREYHRLCLHCSANQGGKS 648
C ++ P + N +L P V D + G+ + + + L L C G +
Sbjct: 157 PCLVSIPGL-NVTLRSQSSVLWPDGQEVVWDDRRGMLV-STPLLHDALYLQCETTWGDQD 214
Query: 649 VLSKKFTLKXXXXXXXXXXXXXSKASYLLREGEEFAVMCLI-KDVSSSVDSMWIRENSQT 825
LS F + K+ LL GE+ + C + + +S V W
Sbjct: 215 FLSNPFLVHITGNELYDIQLLPRKSLELL-VGEKLVLNCTVWAEFNSGVTFDW----DYP 269
Query: 826 KAQVKRNSW----HQGDFHFLRQERLTISSARVNDSGVFMCYADNTFGSANVPTTLEVVH 993
Q +R W H LTI + +D G ++C A+N T + V
Sbjct: 270 GKQAERGKWVPERRSQQTHTELSSILTIHNVSQHDLGSYVCKANNGIQRFRESTEVIVHE 329
Query: 994 KGFINIFPMMNTTVFVHDGDDV 1059
FI++ + + GD++
Sbjct: 330 NPFISVEWLKGPILEATAGDEL 351
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.317 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,735,015
Number of extensions: 1134410
Number of successful extensions: 4345
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4328
Number of HSP's successfully gapped: 6
Length of query: 359
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 255
Effective length of database: 14,868,908
Effective search space: 3791571540
Effective search space used: 3791571540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003428
(1077 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116205.1| mast/stem cell growth factor receptor isofor... 392 e-109
Alignment gi|NP_066922.2| mast/stem cell growth factor receptor isoform 2... 392 e-109
Alignment gi|NP_001032948.2| macrophage colony-stimulating factor 1 recep... 79 6e-15
Alignment gi|NP_081116.3| platelet-derived growth factor receptor-like pr... 67 2e-11
Alignment gi|NP_032055.1| vascular endothelial growth factor receptor 3 p... 55 7e-08
Alignment gi|NP_034358.2| vascular endothelial growth factor receptor 1 p... 50 4e-06
>ref|NP_001116205.1| mast/stem cell growth factor receptor isoform 1 [Mus musculus].
Length = 979
Score = 392 bits (1007), Expect = e-109
Identities = 195/302 (64%), Positives = 235/302 (77%), Gaps = 3/302 (0%)
Frame = +1
Query: 181 IHPAKSELIVSAGDEIRLFCTDPGSVKWTFET-LGQLSENTHAEWIVEKAEAMNTGNYTC 357
IHPA+SELIV AGD + L C DP V+WTF+T ++ EN EWI EKAEA TG YTC
Sbjct: 39 IHPAQSELIVEAGDTLSLTCIDPDFVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTC 98
Query: 358 TNEGGLSSSIYVFVRDPEKLFLVDPPLYGKEDNDALVRCPLTDPEVTNYSLTGCEGKPLP 537
+N GL+SSIYVFVRDP KLFLV PL+GKED+DALVRCPLTDP+V+NYSL C+GK LP
Sbjct: 99 SNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSNYSLIECDGKSLP 158
Query: 538 KDLTFVADPKAGITIRNVKREYHRLCLHCSANQGGKSVLSKKFTLKXXXXXXXXXXXXXS 717
DLTFV +PKAGITI+NVKR YHRLC+ C+A + G + S KFTLK
Sbjct: 159 TDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVRAAIKAIPVVSVP 218
Query: 718 KASYLLREGEEFAVMCLIKDVSSSVDSMWIRENSQTK--AQVKRNSWHQGDFHFLRQERL 891
+ S+LL++G+ F V+C IKDVS+SV+SMW++ N Q + AQVK NSWH+GDF++ RQE L
Sbjct: 219 ETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETL 278
Query: 892 TISSARVNDSGVFMCYADNTFGSANVPTTLEVVHKGFINIFPMMNTTVFVHDGDDVDLIV 1071
TISSARV+DSGVFMCYA+NTFGSANV TTL+VV KGFINI P+ NTTVFV DG++VDL+V
Sbjct: 279 TISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKGFINISPVKNTTVFVTDGENVDLVV 338
Query: 1072 EY 1077
EY
Sbjct: 339 EY 340
>ref|NP_066922.2| mast/stem cell growth factor receptor isoform 2 [Mus musculus].
Length = 975
Score = 392 bits (1007), Expect = e-109
Identities = 195/302 (64%), Positives = 235/302 (77%), Gaps = 3/302 (0%)
Frame = +1
Query: 181 IHPAKSELIVSAGDEIRLFCTDPGSVKWTFET-LGQLSENTHAEWIVEKAEAMNTGNYTC 357
IHPA+SELIV AGD + L C DP V+WTF+T ++ EN EWI EKAEA TG YTC
Sbjct: 39 IHPAQSELIVEAGDTLSLTCIDPDFVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTC 98
Query: 358 TNEGGLSSSIYVFVRDPEKLFLVDPPLYGKEDNDALVRCPLTDPEVTNYSLTGCEGKPLP 537
+N GL+SSIYVFVRDP KLFLV PL+GKED+DALVRCPLTDP+V+NYSL C+GK LP
Sbjct: 99 SNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSNYSLIECDGKSLP 158
Query: 538 KDLTFVADPKAGITIRNVKREYHRLCLHCSANQGGKSVLSKKFTLKXXXXXXXXXXXXXS 717
DLTFV +PKAGITI+NVKR YHRLC+ C+A + G + S KFTLK
Sbjct: 159 TDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVRAAIKAIPVVSVP 218
Query: 718 KASYLLREGEEFAVMCLIKDVSSSVDSMWIRENSQTK--AQVKRNSWHQGDFHFLRQERL 891
+ S+LL++G+ F V+C IKDVS+SV+SMW++ N Q + AQVK NSWH+GDF++ RQE L
Sbjct: 219 ETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETL 278
Query: 892 TISSARVNDSGVFMCYADNTFGSANVPTTLEVVHKGFINIFPMMNTTVFVHDGDDVDLIV 1071
TISSARV+DSGVFMCYA+NTFGSANV TTL+VV KGFINI P+ NTTVFV DG++VDL+V
Sbjct: 279 TISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKGFINISPVKNTTVFVTDGENVDLVV 338
Query: 1072 EY 1077
EY
Sbjct: 339 EY 340
>ref|NP_001032948.2| macrophage colony-stimulating factor 1 receptor precursor [Mus
musculus].
Length = 977
Score = 79.0 bits (193), Expect = 6e-15
Identities = 74/309 (23%), Positives = 130/309 (42%), Gaps = 12/309 (3%)
Frame = +1
Query: 181 IHPAKSELIVSAGDEIRLFCTDPGSVKWTFETLGQLS-------ENTHAEWIVEKAEAMN 339
I P+ EL+V G+ + L C GSV+W G +S E+ + A N
Sbjct: 23 IEPSGPELVVEPGETVTLRCVSNGSVEWD----GPISPYWTLDPESPGSTLTTRNATFKN 78
Query: 340 TGNYTCTN-EGGL--SSSIYVFVRDPEKLF-LVDPPLYGKEDNDALVRCPLTDPEVTN-Y 504
TG Y CT E + S++I+++V+DP + L+ + E +A++ C +TDP + +
Sbjct: 79 TGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSV 138
Query: 505 SLTGCEGKPLPKDLTFVADPKAGITIRNVKREYHRLCLHCSANQGGKSVLSKKFTLKXXX 684
SL G+ + + + P G IR K + C G+ S LK
Sbjct: 139 SLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYV-CKTMVNGRESTSTGIWLKVNR 197
Query: 685 XXXXXXXXXXSKASYLLREGEEFAVMCLIKDVSSSVDSMWIRENSQTKAQVKRNSWHQGD 864
+ + GE ++C ++ V I + TK ++ NS Q D
Sbjct: 198 VHPEPPQIKLEPSKLVRIRGEAAQIVC--SATNAEVGFNVILKRGDTKLEIPLNSDFQ-D 254
Query: 865 FHFLRQERLTISSARVNDSGVFMCYADNTFGSANVPTTLEVVHKGFINIFPMMNTTVFVH 1044
++ + L++++ D+G++ C A N G+ +VV ++N+ + V
Sbjct: 255 NYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESAYLNLTSEQSLLQEVS 314
Query: 1045 DGDDVDLIV 1071
GD + L V
Sbjct: 315 VGDSLILTV 323
>ref|NP_081116.3| platelet-derived growth factor receptor-like protein precursor [Mus
musculus].
Length = 375
Score = 67.4 bits (163), Expect = 2e-11
Identities = 56/224 (25%), Positives = 96/224 (42%), Gaps = 12/224 (5%)
Frame = +1
Query: 349 YTCTNEGGLSSSIYVFVRDPEKLFLVDPP----LYGKEDNDALVRCPLTDPEVTNYSLTG 516
Y C + + S Y+F + +LF+ P +Y D A+V C +T P
Sbjct: 151 YICRRDEAKTGSTYIFFTEKGELFVPSPSYFDVVYLNPDRQAVVPCRVTAPSAKVTLHRE 210
Query: 517 CEGKPLPKDLT-FVADPKAGITIRNVKREYHRLCLHCSANQGGKSVLSKKFTLKXXXXXX 693
K +P + T V D K G + H+ ++C A GGKS +S K+ L
Sbjct: 211 FPAKEIPANGTDIVYDMKRGFVYLQPHSD-HQGVVYCKAEAGGKSQISVKYQLLYVEVPS 269
Query: 694 XXXXXXXSKASYLLREGEEFAVMC-LIKDVSSSVDSMWIRENSQTKAQVK-RNSW---HQ 858
+S +R G++ +V+C ++ + V+ W+ + + V +++W H+
Sbjct: 270 GPPSTTILASSNKVRGGDDISVLCTVLGEPDVEVEFRWLFPGQKDERPVTIQDTWRLIHR 329
Query: 859 GDFHFLR--QERLTISSARVNDSGVFMCYADNTFGSANVPTTLE 984
G H R Q + + D+G ++C A N G V TT+E
Sbjct: 330 GLGHTTRISQSVIIVEDFETIDAGYYICTAQNLRGQTTVATTVE 373
>ref|NP_032055.1| vascular endothelial growth factor receptor 3 precursor [Mus
musculus].
Length = 1363
Score = 55.5 bits (132), Expect = 7e-08
Identities = 73/316 (23%), Positives = 119/316 (37%), Gaps = 31/316 (9%)
Frame = +1
Query: 205 IVSAGDEIRLFCTDPGSVKWTFE-------TLGQLSENTHAEWIVEKAEAM--------- 336
++ GD + + C ++WT+ T G+ SE+T E EA
Sbjct: 40 VIDTGDSLSISCRGQHPLEWTWPGAQEVLTTGGKDSEDTRVVHDCEGTEARPYCKVLLLA 99
Query: 337 -----NTGNYTCTN-------EGGLSSSIYVFVRDPEKLFLVDPPLYGKEDNDAL-VRCP 477
NTG+Y C EG ++S YVFVRD + F+ P D++ V C
Sbjct: 100 QTHANNTGSYHCYYKYIKARIEGTTAASTYVFVRDFKHPFINKPDTLLVNRKDSMWVPCL 159
Query: 478 LTDPEVTNYSLTGCEGKPLPKDLTFVADPKAGITI-RNVKREYHRLCLHCSANQGGKSVL 654
++ P + N +L P + D + G+ + + R+ L L C G ++ L
Sbjct: 160 VSIPGL-NITLRSQSSALHPDGQEVLWDDRRGMRVPTQLLRD--ALYLQCETTWGDQNFL 216
Query: 655 SKKFTLKXXXXXXXXXXXXXSKASYLLREGEEFAVMCLI-KDVSSSVDSMWIRENSQTKA 831
S F + K+ LL GE+ + C + + S V W Q +
Sbjct: 217 SNLFVVHITGNELYDIQLYPKKSMELL-VGEKLVLNCTVWAEFDSGVTFDWDYPGKQAER 275
Query: 832 QVKRNSWHQGDFHFLRQERLTISSARVNDSGVFMCYADNTFGSANVPTTLEVVHKGFINI 1011
H LTI + ND G ++C A+N T + V K FI++
Sbjct: 276 AKWVPERRSQQTHTELSSILTIHNVSQNDLGPYVCEANNGIQRFRESTEVIVHEKPFISV 335
Query: 1012 FPMMNTTVFVHDGDDV 1059
+ + GD++
Sbjct: 336 EWLKGPVLEATAGDEL 351
>ref|NP_034358.2| vascular endothelial growth factor receptor 1 precursor [Mus
musculus].
Length = 1333
Score = 49.7 bits (117), Expect = 4e-06
Identities = 64/303 (21%), Positives = 110/303 (36%), Gaps = 34/303 (11%)
Frame = +1
Query: 205 IVSAGDEIRLFCTDPGSVKWTFETL----------------GQLSENTHAEWIVEKAEAM 336
++ AG + L C + W+ T G+ + + ++ A+A
Sbjct: 42 VMQAGQTLFLKCRGEAAHSWSLPTTVSQEDKRLSITPPSACGRDNRQFCSTLTLDTAQAN 101
Query: 337 NTGNYTC-------TNEGGLSSSIYVFVRDPEKLFL---VDPP--LYGKEDNDALVRCPL 480
+TG YTC + + SSIY+FV D F+ D P ++ E ++ C +
Sbjct: 102 HTGLYTCRYLPTSTSKKKKAESSIYIFVSDAGSPFIEMHTDIPKLVHMTEGRQLIIPCRV 161
Query: 481 TDPEVTNYSLTGCEGKPLPKDLTFVADPKAGITIRNVKREYHRLCLHCSANQGGKSVLSK 660
T P VT P D + G I N + L L+C A G +
Sbjct: 162 TSPNVTVTLKKFPFDTLTPDGQRITWDSRRGFIIANATYKEIGL-LNCEATVNGHLYQTN 220
Query: 661 KFTLKXXXXXXXXXXXXXSKASYLLREGEEFAVMCLIK-DVSSSVDSMWIRENSQTKA-- 831
T + S L G+ + C ++++ V W TK
Sbjct: 221 YLTHRQTNTILDVQIRPPSPVRLL--HGQTLVLNCTATTELNTRVQMSWNYPGKATKRAS 278
Query: 832 ---QVKRNSWHQGDFHFLRQERLTISSARVNDSGVFMCYADNTFGSANVPTTLEVVHKGF 1002
++ R+ H FH + L I++ D G++ C + + T++ V KGF
Sbjct: 279 IRQRIDRSHSHNNVFHSV----LKINNVESRDKGLYTCRVKSGSSFQSFNTSVHVYEKGF 334
Query: 1003 INI 1011
I++
Sbjct: 335 ISV 337
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.317 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,485,715
Number of extensions: 957094
Number of successful extensions: 3608
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3590
Number of HSP's successfully gapped: 6
Length of query: 359
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 256
Effective length of database: 12,523,851
Effective search space: 3206105856
Effective search space used: 3206105856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003428
(1077 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001037990.1| mast/stem cell growth factor receptor precur... 566 e-162
Alignment gi|XP_003124148.2| PREDICTED: macrophage colony-stimulating fac... 61 9e-10
Alignment gi|XP_003123684.1| PREDICTED: vascular endothelial growth facto... 61 9e-10
Alignment gi|XP_003354409.1| PREDICTED: tyrosine-protein kinase transform... 55 9e-08
>ref|NP_001037990.1| mast/stem cell growth factor receptor precursor [Sus scrofa].
Length = 972
Score = 566 bits (1458), Expect = e-162
Identities = 282/330 (85%), Positives = 288/330 (87%)
Frame = +1
Query: 88 WDXXXXXXXXXXXXTGXXXXXXXXXXXXXXXIHPAKSELIVSAGDEIRLFCTDPGSVKWT 267
WD TG IHPAKSELIVSAGDEIRLFCTDPGSVKWT
Sbjct: 8 WDFLFVLQLLLRVQTGSSQPSVSPEELSPPSIHPAKSELIVSAGDEIRLFCTDPGSVKWT 67
Query: 268 FETLGQLSENTHAEWIVEKAEAMNTGNYTCTNEGGLSSSIYVFVRDPEKLFLVDPPLYGK 447
FETLGQLSENTHAEWIVEKAEAMNTGNYTCTNEGGLSSSIYVFVRDPEKLFLVDPPLYGK
Sbjct: 68 FETLGQLSENTHAEWIVEKAEAMNTGNYTCTNEGGLSSSIYVFVRDPEKLFLVDPPLYGK 127
Query: 448 EDNDALVRCPLTDPEVTNYSLTGCEGKPLPKDLTFVADPKAGITIRNVKREYHRLCLHCS 627
EDNDALVRCPLTDPEVTNYSLTGCEGKPLPKDLTFVADPKAGITI+NVKREYHRLCLHCS
Sbjct: 128 EDNDALVRCPLTDPEVTNYSLTGCEGKPLPKDLTFVADPKAGITIKNVKREYHRLCLHCS 187
Query: 628 ANQGGKSVLSKKFTLKXXXXXXXXXXXXXSKASYLLREGEEFAVMCLIKDVSSSVDSMWI 807
ANQGGKSVLSKKFTLK SKASYLLREGEEFAVMCLIKDVSSSVDSMWI
Sbjct: 188 ANQGGKSVLSKKFTLKVRAAIRAVPVVAVSKASYLLREGEEFAVMCLIKDVSSSVDSMWI 247
Query: 808 RENSQTKAQVKRNSWHQGDFHFLRQERLTISSARVNDSGVFMCYADNTFGSANVPTTLEV 987
RENSQTKAQVKRNSWHQGDF+FLRQE+LTISSARVNDSGVFMCYA+NTFGSANV TTLEV
Sbjct: 248 RENSQTKAQVKRNSWHQGDFNFLRQEKLTISSARVNDSGVFMCYANNTFGSANVTTTLEV 307
Query: 988 VHKGFINIFPMMNTTVFVHDGDDVDLIVEY 1077
V KGFINIFPMMNTTVFV+DG+DVDLIVEY
Sbjct: 308 VDKGFINIFPMMNTTVFVNDGEDVDLIVEY 337
>ref|XP_003124148.2| PREDICTED: macrophage colony-stimulating factor 1 receptor, partial
[Sus scrofa].
Length = 941
Score = 61.2 bits (147), Expect = 9e-10
Identities = 75/323 (23%), Positives = 123/323 (38%), Gaps = 25/323 (7%)
Frame = +1
Query: 181 IHPAKSELIVSAGDEIRLFCTDPGSVKWTFETLGQLSEN-------THAEWIVEKAEAMN 339
I P+ EL+V G + L C SV+W G +S + + A N
Sbjct: 23 IEPSGPELVVEPGAAVTLRCVSNVSVEWD----GPISRSWTLDPDAPSSALTTNNATFQN 78
Query: 340 TGNYTCTNEG---GLSSSIYVFVRDPEKLF-LVDPPLYGKEDNDALVRCPLTDPEVTN-- 501
TG Y CT G G S++I+++V+D + + ++ P + E DA + C LTDP +
Sbjct: 79 TGTYRCTELGDPLGGSATIHLYVKDHRRPWRVLAPEVTVLEGQDARLPCLLTDPALAGGV 138
Query: 502 -----YSLTGCEGKPLPKDLTFVADPKAGITIRNVK----REYHRLCLHCSANQGGKSVL 654
L+ G+ + + + P G TI K ++Y C+ G+ V
Sbjct: 139 SLALLRRLSVLPGRAVLRQTNYSFSPWHGFTIHKAKFIEGQDY-----ACTVLVDGRVVW 193
Query: 655 SKKFTLKXXXXXXXXXXXXXSKASYLLREGEEFAVMCLIKDVSSSVDSMWIRENSQTKAQ 834
S L + GE ++C DV + R TK
Sbjct: 194 S-SVRLNVQKVIPGPPTLTLKPTELVRIRGEAAQIVCSATDVDVHFEVFLHR--GDTKLA 250
Query: 835 VKRNSWHQGDFHFLRQER---LTISSARVNDSGVFMCYADNTFGSANVPTTLEVVHKGFI 1005
+ + Q DFH R ++ L + D+G + C A N G+ VV ++
Sbjct: 251 ISQ----QSDFHDNRYQKVLTLDLDPVGFQDAGNYTCMATNARGTHATSMVFRVVEGAYL 306
Query: 1006 NIFPMMNTTVFVHDGDDVDLIVE 1074
+ + V G+ +DL V+
Sbjct: 307 TLTSEQSLRQEVAVGEKLDLKVK 329
>ref|XP_003123684.1| PREDICTED: vascular endothelial growth factor receptor 3-like [Sus
scrofa].
Length = 1389
Score = 61.2 bits (147), Expect = 9e-10
Identities = 65/262 (24%), Positives = 107/262 (40%), Gaps = 13/262 (4%)
Frame = +1
Query: 313 IVEKAEAMNTGNYTCTN-------EGGLSSSIYVFVRDPEKLFLVDPPLYGKEDNDAL-V 468
++++A A +TG+Y C EG ++S YVFVRDPE+ F+ P D++ V
Sbjct: 123 LLQEAHANDTGSYRCYYKYIKARIEGTTAASTYVFVRDPEQPFINKPDTLLVNRKDSMWV 182
Query: 469 RCPLTDPEVTNYSLTGCEGKPLPKDLTFVADPKAGITIRNVKREYHRLCLHCSANQGGKS 648
C ++ P + N +L P V D + G+ + L L C + GG++
Sbjct: 183 PCRVSIPGL-NITLRSQSSVLRPDGQEVVWDDRRGMRVPTPLLR-DALYLQCETSWGGQA 240
Query: 649 VLSKKFTLKXXXXXXXXXXXXXSKASYLLREGEEFAVMCLI-KDVSSSVDSMWIRENSQT 825
LS F + K+ LL GE+ + C + + +S V W
Sbjct: 241 FLSNPFLVHITGNELYDIQLFPKKSLELL-VGEKLVLNCTVWAEFNSGVTFDW----DYP 295
Query: 826 KAQVKRNSW----HQGDFHFLRQERLTISSARVNDSGVFMCYADNTFGSANVPTTLEVVH 993
Q +R W H LTI + +D G ++C A+N T + V
Sbjct: 296 GKQAERGRWVPERRSQQTHTELSSILTIHNVSQHDLGPYVCQANNGIQQFQESTEVIVHE 355
Query: 994 KGFINIFPMMNTTVFVHDGDDV 1059
K FI++ + + GD++
Sbjct: 356 KPFISVEWLKGPVLEATAGDEL 377
>ref|XP_003354409.1| PREDICTED: tyrosine-protein kinase transforming protein fms-like
[Sus scrofa].
Length = 410
Score = 54.7 bits (130), Expect = 9e-08
Identities = 67/285 (23%), Positives = 109/285 (38%), Gaps = 25/285 (8%)
Frame = +1
Query: 181 IHPAKSELIVSAGDEIRLFCTDPGSVKWTFETLGQLSEN-------THAEWIVEKAEAMN 339
I P+ EL+V G + L C SV+W G +S + + A N
Sbjct: 52 IEPSGPELVVEPGAAVTLRCVSNVSVEWD----GPISRSWTLDPDAPSSALTTNNATFQN 107
Query: 340 TGNYTCTNEG---GLSSSIYVFVRDPEKLF-LVDPPLYGKEDNDALVRCPLTDPEVTN-- 501
TG Y CT G G S++I+++V+D + + ++ P + E DA + C LTDP +
Sbjct: 108 TGTYRCTELGDPLGGSATIHLYVKDHRRPWRVLAPEVTVLEGQDARLPCLLTDPALAGGV 167
Query: 502 -----YSLTGCEGKPLPKDLTFVADPKAGITIRNVK----REYHRLCLHCSANQGGKSVL 654
L+ G+ + + + P G TI K ++Y C+ G+ V+
Sbjct: 168 SLALLRRLSVLPGRAVLRQTNYSFSPWHGFTIHKAKFIEGQDY-----ACTVLVDGR-VV 221
Query: 655 SKKFTLKXXXXXXXXXXXXXSKASYLLREGEEFAVMCLIKDVSSSVDSMWIRENSQTKAQ 834
L + GE ++C DV + R TK
Sbjct: 222 WNSVRLNVQKVIPGPPTLTLKPTELVRIRGEAAQIVCSATDVDVHFEVFLHR--GDTKLA 279
Query: 835 VKRNSWHQGDFHFLRQER---LTISSARVNDSGVFMCYADNTFGS 960
+ + Q DFH R ++ L + D+G + C A N G+
Sbjct: 280 ISQ----QSDFHDNRYQKVLTLDLDPVGFQDAGNYTCMATNARGT 320
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.317 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,144,760
Number of extensions: 711110
Number of successful extensions: 2647
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2632
Number of HSP's successfully gapped: 4
Length of query: 359
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 259
Effective length of database: 8,854,232
Effective search space: 2293246088
Effective search space used: 2293246088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003428
(1077 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 563 e-158
gb|GL895466.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 198 4e-48
>Sscrofa_Chr08
|| Length = 148491826
Score = 563 bits (284), Expect = e-158
Identities = 284/284 (100%)
Strand = Plus / Plus
Query: 402 agatcctgagaagcttttcctcgtcgaccctcccttgtatgggaaggaggacaatgacgc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43554345 agatcctgagaagcttttcctcgtcgaccctcccttgtatgggaaggaggacaatgacgc 43554404
Query: 462 gctggtccgatgtcctctgacggacccagaggtgaccaattactccctcacgggctgcga 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43554405 gctggtccgatgtcctctgacggacccagaggtgaccaattactccctcacgggctgcga 43554464
Query: 522 ggggaaaccccttcccaaggatttgaccttcgtcgcggaccccaaggccggcatcaccat 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43554465 ggggaaaccccttcccaaggatttgaccttcgtcgcggaccccaaggccggcatcaccat 43554524
Query: 582 cagaaacgtgaagcgcgagtatcatcggctctgtctccactgctccgccaaccagggggg 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43554525 cagaaacgtgaagcgcgagtatcatcggctctgtctccactgctccgccaaccagggggg 43554584
Query: 642 caagtccgtgctgtcgaagaaattcaccctgaaagtgagggcag 685
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43554585 caagtccgtgctgtcgaagaaattcaccctgaaagtgagggcag 43554628
Score = 541 bits (273), Expect = e-151
Identities = 273/273 (100%)
Strand = Plus / Plus
Query: 131 caggctcttctcagccatctgtgagtccagaggaactgtctccaccatccatccatccag 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43550242 caggctcttctcagccatctgtgagtccagaggaactgtctccaccatccatccatccag 43550301
Query: 191 caaaatcagagttaatcgtcagtgctggcgatgagattaggctgttctgcaccgatccag 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43550302 caaaatcagagttaatcgtcagtgctggcgatgagattaggctgttctgcaccgatccag 43550361
Query: 251 gatctgtcaaatggacttttgagaccctgggtcagctgagtgagaatacacacgcagagt 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43550362 gatctgtcaaatggacttttgagaccctgggtcagctgagtgagaatacacacgcagagt 43550421
Query: 311 ggatcgtggagaaagcagaggccatgaatacaggcaattatacatgcaccaatgaaggcg 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43550422 ggatcgtggagaaagcagaggccatgaatacaggcaattatacatgcaccaatgaaggcg 43550481
Query: 371 gtttaagcagttccatttatgtgtttgttagag 403
|||||||||||||||||||||||||||||||||
Sbjct: 43550482 gtttaagcagttccatttatgtgtttgttagag 43550514
Score = 307 bits (155), Expect = 7e-81
Identities = 167/171 (97%)
Strand = Plus / Plus
Query: 820 cagactaaagcacaggtgaagaggaatagctggcatcagggtgacttccattttctgcgg 879
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 43560263 cagactaaagcacaggtgaagaggaatagctggcatcagggtgacttcaattttctgcgg 43560322
Query: 880 caggaaaggctgacaatcagctcagcaagagttaatgattctggcgtgttcatgtgttac 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43560323 caggaaaggctgacaatcagctcagcaagagttaatgattctggcgtgttcatgtgttac 43560382
Query: 940 gccgataatacttttggatctgctaatgtcccaaccaccttagaagtagta 990
||| ||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 43560383 gccaataatacttttggatctgcaaatgtcacaaccaccttagaagtagta 43560433
Score = 278 bits (140), Expect = 6e-72
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 683 cagccatcagagctgtacctgttgtggctgtgtccaaagcaagctaccttctcagggaag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43555687 cagccatcagagctgtacctgttgtggctgtgtccaaagcaagctaccttctcagggaag 43555746
Query: 743 gggaggaatttgccgtgatgtgcttgatcaaagacgtgtctagttccgtggactccatgt 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43555747 gggaggaatttgccgtgatgtgcttgatcaaagacgtgtctagttccgtggactccatgt 43555806
Query: 803 ggatcagggagaacagccag 822
||||||||||||||||||||
Sbjct: 43555807 ggatcagggagaacagccag 43555826
Score = 155 bits (78), Expect = 6e-35
Identities = 84/86 (97%)
Strand = Plus / Plus
Query: 992 ataaaggattcattaatatcttccctatgatgaataccactgtgtttgtacatgatggcg 1051
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 43565837 ataaaggattcattaatatcttccctatgatgaataccactgtgtttgtaaatgatggcg 43565896
Query: 1052 atgatgtggatctaattgttgaatac 1077
| ||||||||||||||||||||||||
Sbjct: 43565897 aggatgtggatctaattgttgaatac 43565922
>gb|GL895466.1| Sus scrofa unplaced genomic scaffold chrU_scaffold4028
Length = 31180
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 35 aaaggagctccggtcccagagcagccaccgcgatgagaggcgctcgccgcgcctgggatt 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2773 aaaggagctccggtcccagagcagccaccgcgatgagaggcgctcgccgcgcctgggatt 2832
Query: 95 ttctcttcgtcctgcagctcttgcttcgcgtccagacagg 134
||||||||||||||||||||||||||||||||||||||||
Sbjct: 2833 ttctcttcgtcctgcagctcttgcttcgcgtccagacagg 2872
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,394,739
Number of extensions: 276
Number of successful extensions: 276
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 6
Length of query: 1077
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1056
Effective length of database: 2,808,413,156
Effective search space: 2965684292736
Effective search space used: 2965684292736
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)