Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003432
(1009 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029740.1| protein EVI2A [Bos taurus]. 367 e-102
>ref|NP_001029740.1| protein EVI2A [Bos taurus].
Length = 232
Score = 367 bits (943), Expect = e-102
Identities = 188/232 (81%), Positives = 199/232 (85%), Gaps = 2/232 (0%)
Frame = +1
Query: 259 MDHTGHYLHLAFLMTTVLPLSPGTKVNYTHLWANNTTVWDPDTENKTGRSQDENINTNPT 438
M H HYLHLAFLMTT LSPGTK NYTHLW NN+TV DPD NKT RSQ+EN N NP
Sbjct: 1 MGHMRHYLHLAFLMTTAFSLSPGTKANYTHLWDNNSTVLDPDIHNKTDRSQNENFNANPK 60
Query: 439 VPEVDKEGNSTNIPEIATSSPIVSVTPKSEQELY-TSVVRKSSPTVQSIENTSKSHSDIF 615
PE DK+ NSTN+PE TSS I +TPKSE ELY +SVVR S PTVQ+IENTSKSHS+IF
Sbjct: 61 TPEADKKDNSTNMPETETSSHITFLTPKSELELYVSSVVRNSPPTVQNIENTSKSHSEIF 120
Query: 616 KKDICEENNNKMAMLVCLIIIAVLFLICTILFLSTVVLANKVSSLRRSKQVGKRQPRSNG 795
KK +CEE+NNKMAMLVCLIIIAVLFLICTILFLSTVVLANKVSSLRRSKQ GKRQPRSNG
Sbjct: 121 KKGVCEEDNNKMAMLVCLIIIAVLFLICTILFLSTVVLANKVSSLRRSKQAGKRQPRSNG 180
Query: 796 DFLASSGLWPAESDTWKRAKQVTGPNLMMQSTGVLTVTRERKD-EGTEKLTN 948
DFLASSGLWPAESDTWKRAKQ+T PNLMMQSTGVLT T ERKD EGTEKLTN
Sbjct: 181 DFLASSGLWPAESDTWKRAKQLTVPNLMMQSTGVLTATMERKDEEGTEKLTN 232
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,229,468
Number of extensions: 808155
Number of successful extensions: 2311
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2305
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,273,310
Effective search space: 3325681230
Effective search space used: 3325681230
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003432
(1009 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,494,243
Number of extensions: 820941
Number of successful extensions: 2259
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2255
Number of HSP's successfully gapped: 0
Length of query: 336
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 233
Effective length of database: 15,440,896
Effective search space: 3597728768
Effective search space used: 3597728768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003432
(1009 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003927.1| protein EVI2A isoform 1 [Homo sapiens]. 368 e-102
Alignment gi|NP_055025.2| protein EVI2A isoform 2 [Homo sapiens]. 367 e-101
>ref|NP_001003927.1| protein EVI2A isoform 1 [Homo sapiens].
Length = 259
Score = 368 bits (944), Expect = e-102
Identities = 190/243 (78%), Positives = 209/243 (86%), Gaps = 2/243 (0%)
Frame = +1
Query: 235 KITSTLTDMDHTGHYLHLAFLMTTVLPLSPGTKVNYTHLWANNTTVWDPDTENKTGRSQD 414
++ S TDM+HTGHYLHLAFLMTTV LSPGTK NYT LWAN+T+ WD +NKTGR+Q+
Sbjct: 20 RLPSMPTDMEHTGHYLHLAFLMTTVFSLSPGTKANYTRLWANSTSSWDSVIQNKTGRNQN 79
Query: 415 ENINTNPTVPEVDKEGNSTNIPEIATSSPIVSVTPKSEQELYT-SVVRKSSPTVQSIENT 591
ENINTNP PEVD +GNSTN+PE +S IV++T KSEQELY SVV S TVQSIENT
Sbjct: 80 ENINTNPITPEVDYKGNSTNMPE---TSHIVALTSKSEQELYIPSVVSNSPSTVQSIENT 136
Query: 592 SKSHSDIFKKDICEENNNKMAMLVCLIIIAVLFLICTILFLSTVVLANKVSSLRRSKQVG 771
SKSH +IFKKD+C ENNN MAML+CLIIIAVLFLICT LFLSTVVLANKVSSLRRSKQVG
Sbjct: 137 SKSHGEIFKKDVCAENNNNMAMLICLIIIAVLFLICTFLFLSTVVLANKVSSLRRSKQVG 196
Query: 772 KRQPRSNGDFLASSGLWPAESDTWKRAKQVTGPNLMMQSTGVLTVTRERKD-EGTEKLTN 948
KRQPRSNGDFLA SGLWPAESDTWKR KQ+TGPNL+MQSTGVLT TRERKD EGTEKLTN
Sbjct: 197 KRQPRSNGDFLA-SGLWPAESDTWKRTKQLTGPNLVMQSTGVLTATRERKDEEGTEKLTN 255
Query: 949 LQM 957
Q+
Sbjct: 256 KQI 258
>ref|NP_055025.2| protein EVI2A isoform 2 [Homo sapiens].
Length = 236
Score = 367 bits (941), Expect = e-101
Identities = 189/237 (79%), Positives = 206/237 (86%), Gaps = 2/237 (0%)
Frame = +1
Query: 253 TDMDHTGHYLHLAFLMTTVLPLSPGTKVNYTHLWANNTTVWDPDTENKTGRSQDENINTN 432
TDM+HTGHYLHLAFLMTTV LSPGTK NYT LWAN+T+ WD +NKTGR+Q+ENINTN
Sbjct: 3 TDMEHTGHYLHLAFLMTTVFSLSPGTKANYTRLWANSTSSWDSVIQNKTGRNQNENINTN 62
Query: 433 PTVPEVDKEGNSTNIPEIATSSPIVSVTPKSEQELYT-SVVRKSSPTVQSIENTSKSHSD 609
P PEVD +GNSTN+PE +S IV++T KSEQELY SVV S TVQSIENTSKSH +
Sbjct: 63 PITPEVDYKGNSTNMPE---TSHIVALTSKSEQELYIPSVVSNSPSTVQSIENTSKSHGE 119
Query: 610 IFKKDICEENNNKMAMLVCLIIIAVLFLICTILFLSTVVLANKVSSLRRSKQVGKRQPRS 789
IFKKD+C ENNN MAML+CLIIIAVLFLICT LFLSTVVLANKVSSLRRSKQVGKRQPRS
Sbjct: 120 IFKKDVCAENNNNMAMLICLIIIAVLFLICTFLFLSTVVLANKVSSLRRSKQVGKRQPRS 179
Query: 790 NGDFLASSGLWPAESDTWKRAKQVTGPNLMMQSTGVLTVTRERKD-EGTEKLTNLQM 957
NGDFLA SGLWPAESDTWKR KQ+TGPNL+MQSTGVLT TRERKD EGTEKLTN Q+
Sbjct: 180 NGDFLA-SGLWPAESDTWKRTKQLTGPNLVMQSTGVLTATRERKDEEGTEKLTNKQI 235
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,181,006
Number of extensions: 827929
Number of successful extensions: 2423
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2400
Number of HSP's successfully gapped: 2
Length of query: 336
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,901,872
Effective search space: 3472136176
Effective search space used: 3472136176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003432
(1009 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028883.1| protein EVI2A precursor [Mus musculus]. 246 2e-65
Alignment gi|NP_034291.1| protein EVI2A precursor [Mus musculus]. 246 2e-65
>ref|NP_001028883.1| protein EVI2A precursor [Mus musculus].
Length = 223
Score = 246 bits (629), Expect = 2e-65
Identities = 134/230 (58%), Positives = 163/230 (70%), Gaps = 2/230 (0%)
Frame = +1
Query: 259 MDHTGHYLHLAFLMTTV-LPLSPGTKVNYTHLWANNTTVWDPDTENKTGRSQDENINTNP 435
M+H G YLHL FLMTTV S GT+ NYTHLWA++ T +N + R +N NTN
Sbjct: 1 MEHKGQYLHLVFLMTTVWASSSSGTRPNYTHLWASSVTASGSSNQNGSSRHPSDN-NTNL 59
Query: 436 TVPEVDKEGNSTNIPEIATSSPIVSVTPKSEQELYTSVVRKSSPTVQSIENTSKSHSDIF 615
P V + ++T+ P A+S P+ + + + R SSPT + KS + F
Sbjct: 60 VTPAVGHKVSATDKP--ASSPPVPLASTSTLKSSTPHAFRNSSPTAEI-----KSQGETF 112
Query: 616 KKDICEENNNKMAMLVCLIIIAVLFLICTILFLSTVVLANKVSSLRRSKQVGKRQPRSNG 795
KK++CEEN + AML+CLI+IAVLFLICT LFLSTVVLANKVSSL+RSKQVGKRQPRSNG
Sbjct: 113 KKEVCEENTSNTAMLICLIVIAVLFLICTFLFLSTVVLANKVSSLKRSKQVGKRQPRSNG 172
Query: 796 DFLASSGLWPAESDTWKRAKQVTGPNLMMQSTGVLTVTRERK-DEGTEKL 942
DFLASSGLW AESDTWKRAK++TG NL++QS GVLT RERK +EGTEKL
Sbjct: 173 DFLASSGLWTAESDTWKRAKELTGSNLLLQSPGVLTAARERKHEEGTEKL 222
>ref|NP_034291.1| protein EVI2A precursor [Mus musculus].
Length = 223
Score = 246 bits (629), Expect = 2e-65
Identities = 134/230 (58%), Positives = 163/230 (70%), Gaps = 2/230 (0%)
Frame = +1
Query: 259 MDHTGHYLHLAFLMTTV-LPLSPGTKVNYTHLWANNTTVWDPDTENKTGRSQDENINTNP 435
M+H G YLHL FLMTTV S GT+ NYTHLWA++ T +N + R +N NTN
Sbjct: 1 MEHKGQYLHLVFLMTTVWASSSSGTRPNYTHLWASSVTASGSSNQNGSSRHPSDN-NTNL 59
Query: 436 TVPEVDKEGNSTNIPEIATSSPIVSVTPKSEQELYTSVVRKSSPTVQSIENTSKSHSDIF 615
P V + ++T+ P A+S P+ + + + R SSPT + KS + F
Sbjct: 60 VTPAVGHKVSATDKP--ASSPPVPLASTSTLKSSTPHAFRNSSPTAEI-----KSQGETF 112
Query: 616 KKDICEENNNKMAMLVCLIIIAVLFLICTILFLSTVVLANKVSSLRRSKQVGKRQPRSNG 795
KK++CEEN + AML+CLI+IAVLFLICT LFLSTVVLANKVSSL+RSKQVGKRQPRSNG
Sbjct: 113 KKEVCEENTSNTAMLICLIVIAVLFLICTFLFLSTVVLANKVSSLKRSKQVGKRQPRSNG 172
Query: 796 DFLASSGLWPAESDTWKRAKQVTGPNLMMQSTGVLTVTRERK-DEGTEKL 942
DFLASSGLW AESDTWKRAK++TG NL++QS GVLT RERK +EGTEKL
Sbjct: 173 DFLASSGLWTAESDTWKRAKELTGSNLLLQSPGVLTAARERKHEEGTEKL 222
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,350,550
Number of extensions: 718383
Number of successful extensions: 2138
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2123
Number of HSP's successfully gapped: 2
Length of query: 336
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 234
Effective length of database: 12,553,887
Effective search space: 2937609558
Effective search space used: 2937609558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003432
(1009 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131800.2| PREDICTED: LOW QUALITY PROTEIN: protein EVI2... 465 e-131
>ref|XP_003131800.2| PREDICTED: LOW QUALITY PROTEIN: protein EVI2A-like [Sus scrofa].
Length = 234
Score = 465 bits (1196), Expect = e-131
Identities = 232/234 (99%), Positives = 232/234 (99%)
Frame = +1
Query: 259 MDHTGHYLHLAFLMTTVLPLSPGTKVNYTHLWANNTTVWDPDTENKTGRSQDENINTNPT 438
MDHTGHYLHLAFLMTTVLPLSPGTK NYTHLWANNTTVWDPDTENKTGRSQDENINTNPT
Sbjct: 1 MDHTGHYLHLAFLMTTVLPLSPGTKGNYTHLWANNTTVWDPDTENKTGRSQDENINTNPT 60
Query: 439 VPEVDKEGNSTNIPEIATSSPIVSVTPKSEQELYTSVVRKSSPTVQSIENTSKSHSDIFK 618
VPEVDKEGNSTNIPEIATSSPIVSVTPKSEQELYTSVVRKSSPTVQSIENTSKSHSDIFK
Sbjct: 61 VPEVDKEGNSTNIPEIATSSPIVSVTPKSEQELYTSVVRKSSPTVQSIENTSKSHSDIFK 120
Query: 619 KDICEENNNKMAMLVCLIIIAVLFLICTILFLSTVVLANKVSSLRRSKQVGKRQPRSNGD 798
KDICEENNNKMAMLVCLIIIAVLFLICTILFLSTVVLANKVSSLRRSKQVGKRQPRSNGD
Sbjct: 121 KDICEENNNKMAMLVCLIIIAVLFLICTILFLSTVVLANKVSSLRRSKQVGKRQPRSNGD 180
Query: 799 FLASSGLWPAESDTWKRAKQVTGPNLMMQSTGVLTVTRERKDEGTEKLTNLQML 960
FLASSGLWPAESDTWKRAKQVTGPNLMMQSTGVLTVTRERKDEGTEKLTN QML
Sbjct: 181 FLASSGLWPAESDTWKRAKQVTGPNLMMQSTGVLTVTRERKDEGTEKLTNXQML 234
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,883,671
Number of extensions: 511302
Number of successful extensions: 1402
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1400
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,879,129
Effective search space: 2104353573
Effective search space used: 2104353573
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003432
(1009 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1451 0.0
>Sscrofa_Chr12
|| Length = 63588571
Score = 1451 bits (732), Expect = 0.0
Identities = 767/776 (98%), Gaps = 2/776 (0%)
Strand = Plus / Plus
Query: 236 agattaccagcacactcacggacatggaccacacggggcactacctgcatcttgcctttc 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45374533 agattaccagcacactcacggacatggaccacacggggcactacctgcatcttgcctttc 45374592
Query: 296 tgatgacaacagttcttcctttgtctcctggaacaaaagtaaactacacccatctgtggg 355
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 45374593 tgatgacaacagttcttcctttgtctcctggaacaaaaggaaactacacccatctgtggg 45374652
Query: 356 ctaataatactactgtctgggatccagatactgagaataagacgggcagaagccaagatg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45374653 ctaataatactactgtctgggatccagatactgagaataagacgggcagaagccaagatg 45374712
Query: 416 aaaacattaacacaaaccctacagttcctgaagtagataaagaaggtaattctacaaaca 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45374713 aaaacattaacacaaaccctacagttcctgaagtagataaagaaggtaattctacaaaca 45374772
Query: 476 ttcctgaaatagcaacatcatctcccatcgtgtctgtaactcctaaatctgaacaggagc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45374773 ttcctgaaatagcaacatcatctcccatcgtgtctgtaactcctaaatctgaacaggagc 45374832
Query: 536 tttatacttccgttgtcaggaagagttctccaacagtacagagcattgaaaacacaagca 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45374833 tttatacttccgttgtcaggaagagttctccaacagtacagagcattgaaaacacaagca 45374892
Query: 596 aaagtcacagtgatattttcaaaaaagatatctgtgaggaaaacaacaacaaaatggcta 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45374893 aaagtcacagtgatattttcaaaaaagatatctgtgaggaaaacaacaacaaaatggcta 45374952
Query: 656 tgctagtttgcttaattataattgcagtgctcttccttatctgtaccattttatttctat 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45374953 tgctagtttgcttaattataattgcagtgctcttccttatctgtaccattttatttctat 45375012
Query: 716 caactgtggttctggcaaacaaagtctcatctctcagacgatcaaaacaagtaggcaagc 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45375013 caactgtggttctggcaaacaaagtctcatctctcagacgatcaaaacaagtaggcaagc 45375072
Query: 776 gtcagcctagaagcaatggtgattttctggcaagcagtggtctatggcctgctgaatcag 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45375073 gtcagcctagaagcaatggtgattttctggcaagcagtggtctatggcctgctgaatcag 45375132
Query: 836 acacttggaaaagagcaaaacaggtcacagggcccaacctaatgatgcaatccactggag 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45375133 acacttggaaaagagcaaaacaggtcacagggcccaacctaatgatgcaatccactggag 45375192
Query: 896 tgctcacagttaccagggaaaggaaagacgaaggaactgaaaaactcactaacttacaga 955
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 45375193 tgctcacagttaccagggaaagaaaagacgaaggaactgaaaaactcactaactaacaga 45375252
Query: 956 tgctttagtgaggccagatgc-aaacagtactgaaaaggttc-tggaaaaaatgaa 1009
||||||||||| || |||||| |||||||||||| || |||| |||||||||||||
Sbjct: 45375253 tgctttagtgaagcaagatgcaaaacagtactgagaaagttcttggaaaaaatgaa 45375308
Score = 442 bits (223), Expect = e-121
Identities = 223/223 (100%)
Strand = Plus / Plus
Query: 15 cccctgtgacatgggctttagttgcagtggaaaggaaatgtgtcatctgtggttagtgga 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45370516 cccctgtgacatgggctttagttgcagtggaaaggaaatgtgtcatctgtggttagtgga 45370575
Query: 75 aagctagttgtacatatccttttttactgaagatttacttttaggttcatattctacaag 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45370576 aagctagttgtacatatccttttttactgaagatttacttttaggttcatattctacaag 45370635
Query: 135 tctattctgctttgaattacttggaaactgtgcttcaagacaagaaaagaagtggcttat 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45370636 tctattctgctttgaattacttggaaactgtgcttcaagacaagaaaagaagtggcttat 45370695
Query: 195 taaaatcagttaataataagattgtgaccaagcattttgtaag 237
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45370696 taaaatcagttaataataagattgtgaccaagcattttgtaag 45370738
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,938,665
Number of extensions: 263
Number of successful extensions: 263
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 2
Length of query: 1009
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 988
Effective length of database: 2,808,413,156
Effective search space: 2774712198128
Effective search space used: 2774712198128
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)