Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003439
(1225 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030211.2| FAD synthase [Bos taurus]. 675 0.0
Alignment gi|XP_002686034.1| PREDICTED: FAD1 flavin adenine dinucleotide ... 675 0.0
Alignment gi|XP_001789812.1| PREDICTED: FAD-synthetase [Bos taurus]. 675 0.0
Alignment gi|XP_002686035.1| PREDICTED: hypothetical protein [Bos taurus]. 89 8e-18
Alignment gi|XP_002703887.1| PREDICTED: hypothetical protein [Bos taurus]. 89 8e-18
>ref|NP_001030211.2| FAD synthase [Bos taurus].
Length = 490
Score = 675 bits (1742), Expect = 0.0
Identities = 336/352 (95%), Positives = 344/352 (97%)
Frame = +2
Query: 170 MASRASEPPPGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEVA 349
MASRASEPPPGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEVA
Sbjct: 1 MASRASEPPPGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEVA 60
Query: 350 TIAAEVTSFSSRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAIRGLGGEGW 529
TIAAE+T+FSSRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAI+ LGG GW
Sbjct: 61 TIAAEITAFSSRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAIKALGGAGW 120
Query: 530 EKLSRVPSSARLHYGTDPRTGRPFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAV 709
EKLSRVP+SARLHYGTDP TG PFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAV
Sbjct: 121 EKLSRVPTSARLHYGTDPHTGHPFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAV 180
Query: 710 QFHLRELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE 889
QFHLRE+YVAA+EASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE
Sbjct: 181 QFHLREMYVAANEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE 240
Query: 890 CLAYLTARLPQGSLVPYVPNAVEQASEAVYKLTESGSSLGRKVAGALQIIETALARYSLT 1069
CLAYLTARLPQGS+VPYVPNAVEQA EAVYKLTESGSSLG KVAGALQ IETALARYSLT
Sbjct: 241 CLAYLTARLPQGSVVPYVPNAVEQAGEAVYKLTESGSSLGEKVAGALQTIETALARYSLT 300
Query: 1070 QLCVGFNGGKDCTALLHLFHAAVQRKHPDAREPLQILYIRSISPFPELEQFL 1225
QLCVGFNGGKDCTALLHLFHAAVQRK PDA+EPLQILYIRSISPFPELEQFL
Sbjct: 301 QLCVGFNGGKDCTALLHLFHAAVQRKCPDAQEPLQILYIRSISPFPELEQFL 352
>ref|XP_002686034.1| PREDICTED: FAD1 flavin adenine dinucleotide synthetase homolog (S.
cerevisiae) [Bos taurus].
Length = 490
Score = 675 bits (1742), Expect = 0.0
Identities = 336/352 (95%), Positives = 344/352 (97%)
Frame = +2
Query: 170 MASRASEPPPGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEVA 349
MASRASEPPPGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEVA
Sbjct: 1 MASRASEPPPGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEVA 60
Query: 350 TIAAEVTSFSSRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAIRGLGGEGW 529
TIAAE+T+FSSRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAI+ LGG GW
Sbjct: 61 TIAAEITAFSSRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAIKALGGAGW 120
Query: 530 EKLSRVPSSARLHYGTDPRTGRPFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAV 709
EKLSRVP+SARLHYGTDP TG PFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAV
Sbjct: 121 EKLSRVPTSARLHYGTDPHTGHPFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAV 180
Query: 710 QFHLRELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE 889
QFHLRE+YVAA+EASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE
Sbjct: 181 QFHLREMYVAANEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE 240
Query: 890 CLAYLTARLPQGSLVPYVPNAVEQASEAVYKLTESGSSLGRKVAGALQIIETALARYSLT 1069
CLAYLTARLPQGS+VPYVPNAVEQA EAVYKLTESGSSLG KVAGALQ IETALARYSLT
Sbjct: 241 CLAYLTARLPQGSVVPYVPNAVEQAGEAVYKLTESGSSLGEKVAGALQTIETALARYSLT 300
Query: 1070 QLCVGFNGGKDCTALLHLFHAAVQRKHPDAREPLQILYIRSISPFPELEQFL 1225
QLCVGFNGGKDCTALLHLFHAAVQRK PDA+EPLQILYIRSISPFPELEQFL
Sbjct: 301 QLCVGFNGGKDCTALLHLFHAAVQRKCPDAQEPLQILYIRSISPFPELEQFL 352
>ref|XP_001789812.1| PREDICTED: FAD-synthetase [Bos taurus].
Length = 490
Score = 675 bits (1742), Expect = 0.0
Identities = 336/352 (95%), Positives = 344/352 (97%)
Frame = +2
Query: 170 MASRASEPPPGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEVA 349
MASRASEPPPGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEVA
Sbjct: 1 MASRASEPPPGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEVA 60
Query: 350 TIAAEVTSFSSRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAIRGLGGEGW 529
TIAAE+T+FSSRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAI+ LGG GW
Sbjct: 61 TIAAEITAFSSRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAIKALGGAGW 120
Query: 530 EKLSRVPSSARLHYGTDPRTGRPFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAV 709
EKLSRVP+SARLHYGTDP TG PFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAV
Sbjct: 121 EKLSRVPTSARLHYGTDPHTGHPFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAV 180
Query: 710 QFHLRELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE 889
QFHLRE+YVAA+EASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE
Sbjct: 181 QFHLREMYVAANEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE 240
Query: 890 CLAYLTARLPQGSLVPYVPNAVEQASEAVYKLTESGSSLGRKVAGALQIIETALARYSLT 1069
CLAYLTARLPQGS+VPYVPNAVEQA EAVYKLTESGSSLG KVAGALQ IETALARYSLT
Sbjct: 241 CLAYLTARLPQGSVVPYVPNAVEQAGEAVYKLTESGSSLGEKVAGALQTIETALARYSLT 300
Query: 1070 QLCVGFNGGKDCTALLHLFHAAVQRKHPDAREPLQILYIRSISPFPELEQFL 1225
QLCVGFNGGKDCTALLHLFHAAVQRK PDA+EPLQILYIRSISPFPELEQFL
Sbjct: 301 QLCVGFNGGKDCTALLHLFHAAVQRKCPDAQEPLQILYIRSISPFPELEQFL 352
>ref|XP_002686035.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 76
Score = 89.0 bits (219), Expect = 8e-18
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = -1
Query: 427 MGGADAPCCEDVGEAAGERRDLSCNGGYLVGHNGDSAHLDPQGAQRPAQKV 275
M GAD PCCEDVGEAAGE DLSC+GGYLVG++ DSAHLDPQG Q PAQKV
Sbjct: 1 MCGADTPCCEDVGEAAGESCDLSCDGGYLVGYHRDSAHLDPQGTQCPAQKV 51
>ref|XP_002703887.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 76
Score = 89.0 bits (219), Expect = 8e-18
Identities = 41/51 (80%), Positives = 44/51 (86%)
Frame = -1
Query: 427 MGGADAPCCEDVGEAAGERRDLSCNGGYLVGHNGDSAHLDPQGAQRPAQKV 275
M GAD PCCEDVGEAAGE DLSC+GGYLVG++ DSAHLDPQG Q PAQKV
Sbjct: 1 MCGADTPCCEDVGEAAGESCDLSCDGGYLVGYHRDSAHLDPQGTQCPAQKV 51
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,311,566
Number of extensions: 1843749
Number of successful extensions: 10586
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 10280
Number of HSP's successfully gapped: 5
Length of query: 408
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 303
Effective length of database: 14,207,134
Effective search space: 4304761602
Effective search space used: 4304761602
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003439
(1225 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855063.1| PREDICTED: similar to FAD synthetase isoform 1 ... 652 0.0
>ref|XP_855063.1| PREDICTED: similar to FAD synthetase isoform 1 [Canis familiaris].
Length = 490
Score = 652 bits (1681), Expect = 0.0
Identities = 325/352 (92%), Positives = 337/352 (95%)
Frame = +2
Query: 170 MASRASEPPPGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEVA 349
MASRA PPPGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEV
Sbjct: 1 MASRAFAPPPGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEVT 60
Query: 350 TIAAEVTSFSSRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAIRGLGGEGW 529
TIAAE+TSFSSRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAI+ LGG+GW
Sbjct: 61 TIAAEITSFSSRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAIKALGGKGW 120
Query: 530 EKLSRVPSSARLHYGTDPRTGRPFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAV 709
EKLS VPSSARLHYGTDP+TG+PF+FPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAV
Sbjct: 121 EKLSLVPSSARLHYGTDPQTGQPFKFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAV 180
Query: 710 QFHLRELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE 889
QFHLRELYVAADEASIAPILAEAQAHFGR+LGLGSYPDWGSNYYQVKLTLDSEEEGPLEE
Sbjct: 181 QFHLRELYVAADEASIAPILAEAQAHFGRKLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE 240
Query: 890 CLAYLTARLPQGSLVPYVPNAVEQASEAVYKLTESGSSLGRKVAGALQIIETALARYSLT 1069
CLAYLTA LP GSLVPYVP+AV+QASEAVYKL ES SSLG+KVAGALQ IE ALA+Y LT
Sbjct: 241 CLAYLTAHLPPGSLVPYVPDAVQQASEAVYKLAESESSLGKKVAGALQTIEGALAQYGLT 300
Query: 1070 QLCVGFNGGKDCTALLHLFHAAVQRKHPDAREPLQILYIRSISPFPELEQFL 1225
LCVGFNGGKDCTALLHL HAAVQRK PDA+EPLQILYIRSISPFPELEQFL
Sbjct: 301 HLCVGFNGGKDCTALLHLLHAAVQRKCPDAQEPLQILYIRSISPFPELEQFL 352
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,722,543
Number of extensions: 1903778
Number of successful extensions: 10802
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10401
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 303
Effective length of database: 15,374,224
Effective search space: 4658389872
Effective search space used: 4658389872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003439
(1225 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079483.3| FAD synthase isoform 1 [Homo sapiens]. 745 0.0
Alignment gi|NP_958800.1| FAD synthase isoform 2 [Homo sapiens]. 651 0.0
Alignment gi|NP_001171820.1| FAD synthase isoform 3 [Homo sapiens]. 651 0.0
Alignment gi|NP_001171821.1| FAD synthase isoform 4 [Homo sapiens]. 479 e-135
>ref|NP_079483.3| FAD synthase isoform 1 [Homo sapiens].
Length = 587
Score = 745 bits (1924), Expect = 0.0
Identities = 369/401 (92%), Positives = 382/401 (95%)
Frame = +2
Query: 23 QVPSTPEPLFPGYDPQCPVDLAGPQCLRPLFWGLGGYWRALRRGREGRTMASRASEPPPG 202
QVPST +PLFPGY PQCPVDLAGP CLRPLF GLGGYWRAL+RGREGRTM SRASE PG
Sbjct: 49 QVPSTQDPLFPGYGPQCPVDLAGPPCLRPLFGGLGGYWRALQRGREGRTMTSRASELSPG 108
Query: 203 RSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEVATIAAEVTSFSS 382
RSVTAGIIIVGDEILKGHTQDTNT+FLCRTLRSLGVQVCRVSVVPDEVATIAAEVTSFS+
Sbjct: 109 RSVTAGIIIVGDEILKGHTQDTNTFFLCRTLRSLGVQVCRVSVVPDEVATIAAEVTSFSN 168
Query: 383 RFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAIRGLGGEGWEKLSRVPSSAR 562
RFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHP+LEAA + LGGEGWEKLS VPSSAR
Sbjct: 169 RFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPKLEAATKALGGEGWEKLSLVPSSAR 228
Query: 563 LHYGTDPRTGRPFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAVQFHLRELYVAA 742
LHYGTDP TG+PFRFPLVSVRNVYLFPGIPELLRRVLEG+KGLFQN AVQFH +ELYVAA
Sbjct: 229 LHYGTDPCTGQPFRFPLVSVRNVYLFPGIPELLRRVLEGMKGLFQNPAVQFHSKELYVAA 288
Query: 743 DEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEECLAYLTARLPQ 922
DEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEECLAYLTARLPQ
Sbjct: 289 DEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEECLAYLTARLPQ 348
Query: 923 GSLVPYVPNAVEQASEAVYKLTESGSSLGRKVAGALQIIETALARYSLTQLCVGFNGGKD 1102
GSLVPY+PNAVEQASEAVYKL ESGSSLG+KVAGALQ IET+LA+YSLTQLCVGFNGGKD
Sbjct: 349 GSLVPYMPNAVEQASEAVYKLAESGSSLGKKVAGALQTIETSLAQYSLTQLCVGFNGGKD 408
Query: 1103 CTALLHLFHAAVQRKHPDAREPLQILYIRSISPFPELEQFL 1225
CTALLHLFHAAVQRK PD PLQILYIRSISPFPELEQFL
Sbjct: 409 CTALLHLFHAAVQRKLPDVPNPLQILYIRSISPFPELEQFL 449
>ref|NP_958800.1| FAD synthase isoform 2 [Homo sapiens].
Length = 490
Score = 651 bits (1680), Expect = 0.0
Identities = 326/352 (92%), Positives = 337/352 (95%)
Frame = +2
Query: 170 MASRASEPPPGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEVA 349
M SRASE PGRSVTAGIIIVGDEILKGHTQDTNT+FLCRTLRSLGVQVCRVSVVPDEVA
Sbjct: 1 MTSRASELSPGRSVTAGIIIVGDEILKGHTQDTNTFFLCRTLRSLGVQVCRVSVVPDEVA 60
Query: 350 TIAAEVTSFSSRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAIRGLGGEGW 529
TIAAEVTSFS+RFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHP+LEAA + LGGEGW
Sbjct: 61 TIAAEVTSFSNRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPKLEAATKALGGEGW 120
Query: 530 EKLSRVPSSARLHYGTDPRTGRPFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAV 709
EKLS VPSSARLHYGTDP TG+PFRFPLVSVRNVYLFPGIPELLRRVLEG+KGLFQN AV
Sbjct: 121 EKLSLVPSSARLHYGTDPCTGQPFRFPLVSVRNVYLFPGIPELLRRVLEGMKGLFQNPAV 180
Query: 710 QFHLRELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE 889
QFH +ELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE
Sbjct: 181 QFHSKELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE 240
Query: 890 CLAYLTARLPQGSLVPYVPNAVEQASEAVYKLTESGSSLGRKVAGALQIIETALARYSLT 1069
CLAYLTARLPQGSLVPY+PNAVEQASEAVYKL ESGSSLG+KVAGALQ IET+LA+YSLT
Sbjct: 241 CLAYLTARLPQGSLVPYMPNAVEQASEAVYKLAESGSSLGKKVAGALQTIETSLAQYSLT 300
Query: 1070 QLCVGFNGGKDCTALLHLFHAAVQRKHPDAREPLQILYIRSISPFPELEQFL 1225
QLCVGFNGGKDCTALLHLFHAAVQRK PD PLQILYIRSISPFPELEQFL
Sbjct: 301 QLCVGFNGGKDCTALLHLFHAAVQRKLPDVPNPLQILYIRSISPFPELEQFL 352
>ref|NP_001171820.1| FAD synthase isoform 3 [Homo sapiens].
Length = 446
Score = 651 bits (1680), Expect = 0.0
Identities = 326/352 (92%), Positives = 337/352 (95%)
Frame = +2
Query: 170 MASRASEPPPGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEVA 349
M SRASE PGRSVTAGIIIVGDEILKGHTQDTNT+FLCRTLRSLGVQVCRVSVVPDEVA
Sbjct: 1 MTSRASELSPGRSVTAGIIIVGDEILKGHTQDTNTFFLCRTLRSLGVQVCRVSVVPDEVA 60
Query: 350 TIAAEVTSFSSRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAIRGLGGEGW 529
TIAAEVTSFS+RFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHP+LEAA + LGGEGW
Sbjct: 61 TIAAEVTSFSNRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPKLEAATKALGGEGW 120
Query: 530 EKLSRVPSSARLHYGTDPRTGRPFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAV 709
EKLS VPSSARLHYGTDP TG+PFRFPLVSVRNVYLFPGIPELLRRVLEG+KGLFQN AV
Sbjct: 121 EKLSLVPSSARLHYGTDPCTGQPFRFPLVSVRNVYLFPGIPELLRRVLEGMKGLFQNPAV 180
Query: 710 QFHLRELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE 889
QFH +ELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE
Sbjct: 181 QFHSKELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE 240
Query: 890 CLAYLTARLPQGSLVPYVPNAVEQASEAVYKLTESGSSLGRKVAGALQIIETALARYSLT 1069
CLAYLTARLPQGSLVPY+PNAVEQASEAVYKL ESGSSLG+KVAGALQ IET+LA+YSLT
Sbjct: 241 CLAYLTARLPQGSLVPYMPNAVEQASEAVYKLAESGSSLGKKVAGALQTIETSLAQYSLT 300
Query: 1070 QLCVGFNGGKDCTALLHLFHAAVQRKHPDAREPLQILYIRSISPFPELEQFL 1225
QLCVGFNGGKDCTALLHLFHAAVQRK PD PLQILYIRSISPFPELEQFL
Sbjct: 301 QLCVGFNGGKDCTALLHLFHAAVQRKLPDVPNPLQILYIRSISPFPELEQFL 352
>ref|NP_001171821.1| FAD synthase isoform 4 [Homo sapiens].
Length = 294
Score = 479 bits (1234), Expect = e-135
Identities = 242/279 (86%), Positives = 254/279 (91%)
Frame = +2
Query: 170 MASRASEPPPGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEVA 349
M +S PP T G+I + +GHTQDTNT+FLCRTLRSLGVQVCRVSVVPDEVA
Sbjct: 1 MQPSSSTPPLHPYSTDGLIFPFNP--QGHTQDTNTFFLCRTLRSLGVQVCRVSVVPDEVA 58
Query: 350 TIAAEVTSFSSRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAIRGLGGEGW 529
TIAAEVTSFS+RFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHP+LEAA + LGGEGW
Sbjct: 59 TIAAEVTSFSNRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPKLEAATKALGGEGW 118
Query: 530 EKLSRVPSSARLHYGTDPRTGRPFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAV 709
EKLS VPSSARLHYGTDP TG+PFRFPLVSVRNVYLFPGIPELLRRVLEG+KGLFQN AV
Sbjct: 119 EKLSLVPSSARLHYGTDPCTGQPFRFPLVSVRNVYLFPGIPELLRRVLEGMKGLFQNPAV 178
Query: 710 QFHLRELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE 889
QFH +ELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE
Sbjct: 179 QFHSKELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE 238
Query: 890 CLAYLTARLPQGSLVPYVPNAVEQASEAVYKLTESGSSL 1006
CLAYLTARLPQGSLVPY+PNAVEQASEAVYKL ESG L
Sbjct: 239 CLAYLTARLPQGSLVPYMPNAVEQASEAVYKLAESGRDL 277
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,371,194
Number of extensions: 1839601
Number of successful extensions: 9824
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9570
Number of HSP's successfully gapped: 4
Length of query: 408
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 303
Effective length of database: 14,835,944
Effective search space: 4495291032
Effective search space used: 4495291032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003439
(1225 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_796015.2| FAD synthase [Mus musculus]. 630 0.0
>ref|NP_796015.2| FAD synthase [Mus musculus].
Length = 492
Score = 630 bits (1624), Expect = 0.0
Identities = 317/354 (89%), Positives = 331/354 (93%), Gaps = 2/354 (0%)
Frame = +2
Query: 170 MASRASEPPPG--RSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDE 343
MASRASE PPG RSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDE
Sbjct: 1 MASRASELPPGSGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDE 60
Query: 344 VATIAAEVTSFSSRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAIRGLGGE 523
VATIA+EV SFS RFTHVLTAGGIGPTHDDVTFEAVAQAFG+ELKPHPEL+AAI+ LGGE
Sbjct: 61 VATIASEVNSFSRRFTHVLTAGGIGPTHDDVTFEAVAQAFGEELKPHPELQAAIKTLGGE 120
Query: 524 GWEKLSRVPSSARLHYGTDPRTGRPFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNT 703
GWEKLS VPSSARLHYGTDPRTG PFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNT
Sbjct: 121 GWEKLSMVPSSARLHYGTDPRTGHPFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNT 180
Query: 704 AVQFHLRELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPL 883
AVQFHL+ELYVAA E SIAPIL+EAQAHFGRRL LGSYPDW SNY+QVKL LDSEE+ PL
Sbjct: 181 AVQFHLKELYVAASEGSIAPILSEAQAHFGRRLSLGSYPDWSSNYFQVKLILDSEEKEPL 240
Query: 884 EECLAYLTARLPQGSLVPYVPNAVEQASEAVYKLTESGSSLGRKVAGALQIIETALARYS 1063
EECLAYLTARLPQGSLVPY P+AVE+A EAVYKL ESGS LG+KVAGALQ IETALA+Y
Sbjct: 241 EECLAYLTARLPQGSLVPYQPDAVEKAGEAVYKLAESGSCLGKKVAGALQTIETALAQYH 300
Query: 1064 LTQLCVGFNGGKDCTALLHLFHAAVQRKHPDAREPLQILYIRSISPFPELEQFL 1225
L+QLCVGFNGGKDCTALLHLFHAAVQRK PD +PLQILYIRSISPFPELEQFL
Sbjct: 301 LSQLCVGFNGGKDCTALLHLFHAAVQRKFPDVPKPLQILYIRSISPFPELEQFL 354
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,305,301
Number of extensions: 1509349
Number of successful extensions: 8071
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7867
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 304
Effective length of database: 12,493,815
Effective search space: 3798119760
Effective search space used: 3798119760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003439
(1225 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355186.1| PREDICTED: FAD synthase [Sus scrofa]. 702 0.0
Alignment gi|XP_001929410.3| PREDICTED: FAD synthase isoform 1 [Sus scrof... 702 0.0
>ref|XP_003355186.1| PREDICTED: FAD synthase [Sus scrofa].
Length = 490
Score = 702 bits (1813), Expect = 0.0
Identities = 352/352 (100%), Positives = 352/352 (100%)
Frame = +2
Query: 170 MASRASEPPPGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEVA 349
MASRASEPPPGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEVA
Sbjct: 1 MASRASEPPPGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEVA 60
Query: 350 TIAAEVTSFSSRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAIRGLGGEGW 529
TIAAEVTSFSSRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAIRGLGGEGW
Sbjct: 61 TIAAEVTSFSSRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAIRGLGGEGW 120
Query: 530 EKLSRVPSSARLHYGTDPRTGRPFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAV 709
EKLSRVPSSARLHYGTDPRTGRPFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAV
Sbjct: 121 EKLSRVPSSARLHYGTDPRTGRPFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAV 180
Query: 710 QFHLRELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE 889
QFHLRELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE
Sbjct: 181 QFHLRELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE 240
Query: 890 CLAYLTARLPQGSLVPYVPNAVEQASEAVYKLTESGSSLGRKVAGALQIIETALARYSLT 1069
CLAYLTARLPQGSLVPYVPNAVEQASEAVYKLTESGSSLGRKVAGALQIIETALARYSLT
Sbjct: 241 CLAYLTARLPQGSLVPYVPNAVEQASEAVYKLTESGSSLGRKVAGALQIIETALARYSLT 300
Query: 1070 QLCVGFNGGKDCTALLHLFHAAVQRKHPDAREPLQILYIRSISPFPELEQFL 1225
QLCVGFNGGKDCTALLHLFHAAVQRKHPDAREPLQILYIRSISPFPELEQFL
Sbjct: 301 QLCVGFNGGKDCTALLHLFHAAVQRKHPDAREPLQILYIRSISPFPELEQFL 352
>ref|XP_001929410.3| PREDICTED: FAD synthase isoform 1 [Sus scrofa].
Length = 490
Score = 702 bits (1813), Expect = 0.0
Identities = 352/352 (100%), Positives = 352/352 (100%)
Frame = +2
Query: 170 MASRASEPPPGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEVA 349
MASRASEPPPGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEVA
Sbjct: 1 MASRASEPPPGRSVTAGIIIVGDEILKGHTQDTNTYFLCRTLRSLGVQVCRVSVVPDEVA 60
Query: 350 TIAAEVTSFSSRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAIRGLGGEGW 529
TIAAEVTSFSSRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAIRGLGGEGW
Sbjct: 61 TIAAEVTSFSSRFTHVLTAGGIGPTHDDVTFEAVAQAFGDELKPHPELEAAIRGLGGEGW 120
Query: 530 EKLSRVPSSARLHYGTDPRTGRPFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAV 709
EKLSRVPSSARLHYGTDPRTGRPFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAV
Sbjct: 121 EKLSRVPSSARLHYGTDPRTGRPFRFPLVSVRNVYLFPGIPELLRRVLEGLKGLFQNTAV 180
Query: 710 QFHLRELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE 889
QFHLRELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE
Sbjct: 181 QFHLRELYVAADEASIAPILAEAQAHFGRRLGLGSYPDWGSNYYQVKLTLDSEEEGPLEE 240
Query: 890 CLAYLTARLPQGSLVPYVPNAVEQASEAVYKLTESGSSLGRKVAGALQIIETALARYSLT 1069
CLAYLTARLPQGSLVPYVPNAVEQASEAVYKLTESGSSLGRKVAGALQIIETALARYSLT
Sbjct: 241 CLAYLTARLPQGSLVPYVPNAVEQASEAVYKLTESGSSLGRKVAGALQIIETALARYSLT 300
Query: 1070 QLCVGFNGGKDCTALLHLFHAAVQRKHPDAREPLQILYIRSISPFPELEQFL 1225
QLCVGFNGGKDCTALLHLFHAAVQRKHPDAREPLQILYIRSISPFPELEQFL
Sbjct: 301 QLCVGFNGGKDCTALLHLFHAAVQRKHPDAREPLQILYIRSISPFPELEQFL 352
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,834,069
Number of extensions: 1200843
Number of successful extensions: 6930
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6808
Number of HSP's successfully gapped: 2
Length of query: 408
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 307
Effective length of database: 8,829,335
Effective search space: 2710605845
Effective search space used: 2710605845
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003439
(1225 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 1483 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 1483 bits (748), Expect = 0.0
Identities = 748/748 (100%)
Strand = Plus / Minus
Query: 249 agggacacactcaggacaccaacacctactttctgtgccggacgctgcgctccctggggg 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103567453 agggacacactcaggacaccaacacctactttctgtgccggacgctgcgctccctggggg 103567394
Query: 309 tccaggtgtgccgagtctccgttgtgcccgacgaggtagccaccattgcagctgaggtca 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103567393 tccaggtgtgccgagtctccgttgtgcccgacgaggtagccaccattgcagctgaggtca 103567334
Query: 369 cgtctttctccagccgcttcacccacgtcctcacagcagggggcatcggccccacccatg 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103567333 cgtctttctccagccgcttcacccacgtcctcacagcagggggcatcggccccacccatg 103567274
Query: 429 atgatgtgacctttgaggcagtagcacaggcctttggggacgagctcaagccccaccctg 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103567273 atgatgtgacctttgaggcagtagcacaggcctttggggacgagctcaagccccaccctg 103567214
Query: 489 agctggaagcggccatccgaggcctaggaggggaaggctgggagaagctgtcgcgggtgc 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103567213 agctggaagcggccatccgaggcctaggaggggaaggctgggagaagctgtcgcgggtgc 103567154
Query: 549 cctcctctgcccgcctgcattatggcacagaccctcgcacaggccgtcccttcaggttcc 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103567153 cctcctctgcccgcctgcattatggcacagaccctcgcacaggccgtcccttcaggttcc 103567094
Query: 609 cactggtctctgtccgaaacgtctacctcttccccggaattccggagctgctgcggcggg 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103567093 cactggtctctgtccgaaacgtctacctcttccccggaattccggagctgctgcggcggg 103567034
Query: 669 tgctggaggggctcaagggactgttccaaaacacggctgttcagttccacttgcgggagc 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103567033 tgctggaggggctcaagggactgttccaaaacacggctgttcagttccacttgcgggagc 103566974
Query: 729 tgtatgtggcagctgacgaggcctcgattgcccccatcctggctgaggcccaggcccact 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103566973 tgtatgtggcagctgacgaggcctcgattgcccccatcctggctgaggcccaggcccact 103566914
Query: 789 ttgggcgcaggcttggcctgggttcctaccctgactggggcagcaactactatcaggtga 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103566913 ttgggcgcaggcttggcctgggttcctaccctgactggggcagcaactactatcaggtga 103566854
Query: 849 agctgacactggactcggaggaagaagggcccctggaggaatgcctggcctacctaactg 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103566853 agctgacactggactcggaggaagaagggcccctggaggaatgcctggcctacctaactg 103566794
Query: 909 cccgcctgcctcagggatcgctggtcccctatgtccccaacgccgtggagcaggccagtg 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103566793 cccgcctgcctcagggatcgctggtcccctatgtccccaacgccgtggagcaggccagtg 103566734
Query: 969 aggctgtgtacaaactcactgagtcagg 996
||||||||||||||||||||||||||||
Sbjct: 103566733 aggctgtgtacaaactcactgagtcagg 103566706
Score = 454 bits (229), Expect = e-125
Identities = 229/229 (100%)
Strand = Plus / Minus
Query: 23 caggttccctcgaccccggaacccctgttcccaggctatgacccccagtgccctgtagat 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103569281 caggttccctcgaccccggaacccctgttcccaggctatgacccccagtgccctgtagat 103569222
Query: 83 ctggcgggcccccagtgcttgcgacccctattttggggtctgggtggctactggagggcc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103569221 ctggcgggcccccagtgcttgcgacccctattttggggtctgggtggctactggagggcc 103569162
Query: 143 ttgcggaggggcagagaaggcaggaccatggcatctagggcctctgaacctcccccaggg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103569161 ttgcggaggggcagagaaggcaggaccatggcatctagggcctctgaacctcccccaggg 103569102
Query: 203 cgcagcgtgacggcgggcatcatcattgttggagatgagatcctcaagg 251
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103569101 cgcagcgtgacggcgggcatcatcattgttggagatgagatcctcaagg 103569053
Score = 301 bits (152), Expect = 5e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 993 cagggtcttctctggggcgaaaggtggcgggcgccctacagatcattgagactgccctgg 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103565796 cagggtcttctctggggcgaaaggtggcgggcgccctacagatcattgagactgccctgg 103565737
Query: 1053 ctcggtacagcctcacccagctctgtgtgggcttcaacggaggcaaggactgcaccgccc 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103565736 ctcggtacagcctcacccagctctgtgtgggcttcaacggaggcaaggactgcaccgccc 103565677
Query: 1113 tcctgcacctcttccacgccgctgtgcagagg 1144
||||||||||||||||||||||||||||||||
Sbjct: 103565676 tcctgcacctcttccacgccgctgtgcagagg 103565645
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 1142 aggaaacaccctgacgctcgagagcccctccagattctctatatccgcagcatctcccct 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103565197 aggaaacaccctgacgctcgagagcccctccagattctctatatccgcagcatctcccct 103565138
Query: 1202 ttccccgagctggagcagtttcta 1225
||||||||||||||||||||||||
Sbjct: 103565137 ttccccgagctggagcagtttcta 103565114
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,901,903
Number of extensions: 148
Number of successful extensions: 148
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 4
Length of query: 1225
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1204
Effective length of database: 2,808,413,156
Effective search space: 3381329439824
Effective search space used: 3381329439824
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)