Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003453
(1032 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002694524.1| PREDICTED: 2-oxoglutarate and iron-dependent... 547 e-156
Alignment gi|XP_586925.2| PREDICTED: 2-oxoglutarate and iron-dependent ox... 547 e-156
Alignment gi|NP_001180184.1| procollagen-lysine,2-oxoglutarate 5-dioxygen... 51 2e-06
Alignment gi|XP_002698247.1| PREDICTED: procollagen-lysine, 2-oxoglutarat... 51 2e-06
Alignment gi|NP_001094619.1| procollagen-lysine,2-oxoglutarate 5-dioxygen... 50 3e-06
>ref|XP_002694524.1| PREDICTED: 2-oxoglutarate and iron-dependent oxygenase domain
containing 2 [Bos taurus].
Length = 350
Score = 547 bits (1409), Expect = e-156
Identities = 268/324 (82%), Positives = 278/324 (85%)
Frame = +3
Query: 57 MGTAAAPVRFCRCACFCSENLYVARYALHVRFRNEQQLRQDYGPILRSRGCVSAKDFXXX 236
MGTAAAP RFCRCACFCSENLYVARY LHVRFR+EQQLRQDY PILRSRGCVS KDF
Sbjct: 1 MGTAAAPRRFCRCACFCSENLYVARYGLHVRFRSEQQLRQDYEPILRSRGCVSPKDFQQL 60
Query: 237 XXXXXXXXXXXXXXXXXSAARKALIASSYHPVRPDIYSLLQDXXXXXXXXXXXXYSTSPG 416
SAARKALIASSY P RP++Y+LLQ+ YS S G
Sbjct: 61 LGELEQEVERRRRLGPESAARKALIASSYRPARPEVYNLLQEAALAPEFLAAAEYSASSG 120
Query: 417 ADLKGLLQRLETVSEEKRIYRLPVFTAPFCQALLQELEHFEQSDLPKGRPNTMNNYGVLL 596
ADLKGLLQRLETVSEEKRIYRLPVFTAPFCQALL+ELEHFEQSD+PKGRPNTMNNYGVLL
Sbjct: 121 ADLKGLLQRLETVSEEKRIYRLPVFTAPFCQALLEELEHFEQSDMPKGRPNTMNNYGVLL 180
Query: 597 YELGLDEPLVTPLRERFLQPLMALLYPDCGGGWLDSHRAFVVKYAPGQDRELGCHYDNAE 776
+ELGLDEPLVTPLRERFLQPLMALLYPDCGGGWLDSHRAFVVKYAPGQDRELGCHYDNAE
Sbjct: 181 HELGLDEPLVTPLRERFLQPLMALLYPDCGGGWLDSHRAFVVKYAPGQDRELGCHYDNAE 240
Query: 777 LTLNVSLGKAFTGGALYFGDLFQVPSALAHPLEVEHVVGQGILHRGGQLHGARPLGTGER 956
LTLNVSLGKAFTGGALYFGDLFQVPS LA PLEVEHVVGQG+LHRGGQLHGARPLGTGER
Sbjct: 241 LTLNVSLGKAFTGGALYFGDLFQVPSTLAKPLEVEHVVGQGLLHRGGQLHGARPLGTGER 300
Query: 957 WNLXVWLRASAVRNRPLPMCCPQP 1028
WNL VWLRASAVRNR PMCC +P
Sbjct: 301 WNLVVWLRASAVRNRLCPMCCRKP 324
>ref|XP_586925.2| PREDICTED: 2-oxoglutarate and iron-dependent oxygenase domain
containing 2 isoform 2 [Bos taurus].
Length = 350
Score = 547 bits (1409), Expect = e-156
Identities = 268/324 (82%), Positives = 278/324 (85%)
Frame = +3
Query: 57 MGTAAAPVRFCRCACFCSENLYVARYALHVRFRNEQQLRQDYGPILRSRGCVSAKDFXXX 236
MGTAAAP RFCRCACFCSENLYVARY LHVRFR+EQQLRQDY PILRSRGCVS KDF
Sbjct: 1 MGTAAAPRRFCRCACFCSENLYVARYGLHVRFRSEQQLRQDYEPILRSRGCVSPKDFQQL 60
Query: 237 XXXXXXXXXXXXXXXXXSAARKALIASSYHPVRPDIYSLLQDXXXXXXXXXXXXYSTSPG 416
SAARKALIASSY P RP++Y+LLQ+ YS S G
Sbjct: 61 LGELEQEVERRRRLGPESAARKALIASSYRPARPEVYNLLQEAALAPEFLAAAEYSASSG 120
Query: 417 ADLKGLLQRLETVSEEKRIYRLPVFTAPFCQALLQELEHFEQSDLPKGRPNTMNNYGVLL 596
ADLKGLLQRLETVSEEKRIYRLPVFTAPFCQALL+ELEHFEQSD+PKGRPNTMNNYGVLL
Sbjct: 121 ADLKGLLQRLETVSEEKRIYRLPVFTAPFCQALLEELEHFEQSDMPKGRPNTMNNYGVLL 180
Query: 597 YELGLDEPLVTPLRERFLQPLMALLYPDCGGGWLDSHRAFVVKYAPGQDRELGCHYDNAE 776
+ELGLDEPLVTPLRERFLQPLMALLYPDCGGGWLDSHRAFVVKYAPGQDRELGCHYDNAE
Sbjct: 181 HELGLDEPLVTPLRERFLQPLMALLYPDCGGGWLDSHRAFVVKYAPGQDRELGCHYDNAE 240
Query: 777 LTLNVSLGKAFTGGALYFGDLFQVPSALAHPLEVEHVVGQGILHRGGQLHGARPLGTGER 956
LTLNVSLGKAFTGGALYFGDLFQVPS LA PLEVEHVVGQG+LHRGGQLHGARPLGTGER
Sbjct: 241 LTLNVSLGKAFTGGALYFGDLFQVPSTLAKPLEVEHVVGQGLLHRGGQLHGARPLGTGER 300
Query: 957 WNLXVWLRASAVRNRPLPMCCPQP 1028
WNL VWLRASAVRNR PMCC +P
Sbjct: 301 WNLVVWLRASAVRNRLCPMCCRKP 324
>ref|NP_001180184.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 [Bos taurus].
Length = 751
Score = 50.8 bits (120), Expect = 2e-06
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Frame = +3
Query: 471 IYRLPVFTAPFCQALLQELEHF--------EQSDLPKGRPNTMNNYGVLLYELGLDEPLV 626
+Y P+ + C L++E+EH+ E S L G N + + + ++G ++ +
Sbjct: 579 VYWFPLLSEQMCDELVEEMEHYGQWSGGRHEDSRLAGGYEN-VPTVDIHMKQVGYEDQWL 637
Query: 627 TPLRERFLQPLMALLYPDCGGGWLDSHRA---FVVKYAPGQDRELGCHYDNAELTLNVSL 797
LR ++ P+ L+P G+ RA FVV+Y P + L H+D++ TLNV+L
Sbjct: 638 QLLRT-YVGPMTESLFP----GYHTKTRAVMNFVVRYRPDEQPSLRPHHDSSTFTLNVAL 692
Query: 798 ---GKAFTGGALYFGDLFQVPSALAHPLEVEHVVGQGILHRGGQLH 926
G + GG F + ++ P + G G+LH G H
Sbjct: 693 NHKGLDYEGGGCRF---LRYDCVISSPRK-----GWGLLHPGRLTH 730
>ref|XP_002698247.1| PREDICTED: procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 [Bos
taurus].
Length = 751
Score = 50.8 bits (120), Expect = 2e-06
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Frame = +3
Query: 471 IYRLPVFTAPFCQALLQELEHF--------EQSDLPKGRPNTMNNYGVLLYELGLDEPLV 626
+Y P+ + C L++E+EH+ E S L G N + + + ++G ++ +
Sbjct: 579 VYWFPLLSEQMCDELVEEMEHYGQWSGGRHEDSRLAGGYEN-VPTVDIHMKQVGYEDQWL 637
Query: 627 TPLRERFLQPLMALLYPDCGGGWLDSHRA---FVVKYAPGQDRELGCHYDNAELTLNVSL 797
LR ++ P+ L+P G+ RA FVV+Y P + L H+D++ TLNV+L
Sbjct: 638 QLLRT-YVGPMTESLFP----GYHTKTRAVMNFVVRYRPDEQPSLRPHHDSSTFTLNVAL 692
Query: 798 ---GKAFTGGALYFGDLFQVPSALAHPLEVEHVVGQGILHRGGQLH 926
G + GG F + ++ P + G G+LH G H
Sbjct: 693 NHKGLDYEGGGCRF---LRYDCVISSPRK-----GWGLLHPGRLTH 730
>ref|NP_001094619.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 [Bos taurus].
Length = 762
Score = 50.1 bits (118), Expect = 3e-06
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 16/179 (8%)
Frame = +3
Query: 471 IYRLPVFTAPFCQALLQELEHFEQ--------SDLPKGRPNTMNNYGVLLYELGLDEPLV 626
++ P+F+ C L++E+EH+ Q S + G N + + + ++GL+ +
Sbjct: 590 VFWFPIFSEKACDELVEEMEHYGQWSGGKHHDSRISGGYENVPTD-DIHMKQIGLENVWL 648
Query: 627 TPLRERFLQPLMALLYPDCGGGWLDSHRA---FVVKYAPGQDRELGCHYDNAELTLNVSL 797
+RE F+ P+ ++ G+ A FVVKY+P + R L H+D + T+N++L
Sbjct: 649 HFIRE-FIAPVTLKVF----AGYYTKGFALLNFVVKYSPERQRSLRPHHDASTFTINIAL 703
Query: 798 ---GKAFTGGALYFGDLFQVPSALAHPLEVEHVVGQGILHRG--GQLHGARPLGTGERW 959
G+ F GG F + ++ P + G +H G LH P+ G R+
Sbjct: 704 NNVGEDFQGGGCKF---LRYNCSIESPRK-----GWSFMHPGRLTHLHEGLPVKNGTRY 754
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,887,281
Number of extensions: 1083547
Number of successful extensions: 4195
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4183
Number of HSP's successfully gapped: 5
Length of query: 344
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,273,310
Effective search space: 3439867710
Effective search space used: 3439867710
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003453
(1032 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534653.2| PREDICTED: hypothetical protein XP_534653 [Cani... 531 e-151
Alignment gi|XP_536856.2| PREDICTED: similar to procollagen-lysine, 2-oxo... 50 5e-06
Alignment gi|XP_858413.1| PREDICTED: similar to procollagen-lysine, 2-oxo... 50 5e-06
Alignment gi|XP_865470.1| PREDICTED: similar to Procollagen-lysine,2-oxog... 49 6e-06
>ref|XP_534653.2| PREDICTED: hypothetical protein XP_534653 [Canis familiaris].
Length = 548
Score = 531 bits (1367), Expect = e-151
Identities = 260/331 (78%), Positives = 275/331 (83%)
Frame = +3
Query: 36 GCSRLFTMGTAAAPVRFCRCACFCSENLYVARYALHVRFRNEQQLRQDYGPILRSRGCVS 215
G +RL TM TA AP RFCRCACFC+ENLYVARY LHVRF+ EQQL +DYG ILRSRGCVS
Sbjct: 191 GGTRLLTMATARAPRRFCRCACFCTENLYVARYRLHVRFQGEQQLLRDYGRILRSRGCVS 250
Query: 216 AKDFXXXXXXXXXXXXXXXXXXXXSAARKALIASSYHPVRPDIYSLLQDXXXXXXXXXXX 395
KDF SAARKALI+SSYHP RPD+Y+ LQD
Sbjct: 251 PKDFQELLGELEQEVERRQRLGQESAARKALISSSYHPARPDLYNTLQDEALAPEFLAAA 310
Query: 396 XYSTSPGADLKGLLQRLETVSEEKRIYRLPVFTAPFCQALLQELEHFEQSDLPKGRPNTM 575
YS SPGADL+GLLQRLE VS EKRIYRLPVFTAPFC+ALL+ELEHFEQSD+PKGRPNTM
Sbjct: 311 EYSASPGADLEGLLQRLEMVSGEKRIYRLPVFTAPFCRALLEELEHFEQSDMPKGRPNTM 370
Query: 576 NNYGVLLYELGLDEPLVTPLRERFLQPLMALLYPDCGGGWLDSHRAFVVKYAPGQDRELG 755
NNYGVLL+ELGLDEPLVTPLRERFLQPLMALLYPDCGGGWLDSHRAFVVKYA GQDRELG
Sbjct: 371 NNYGVLLHELGLDEPLVTPLRERFLQPLMALLYPDCGGGWLDSHRAFVVKYALGQDRELG 430
Query: 756 CHYDNAELTLNVSLGKAFTGGALYFGDLFQVPSALAHPLEVEHVVGQGILHRGGQLHGAR 935
CHYDNAELTLNV+LGK FTGGALYFG LFQ PSALA PLEVEHVVGQGILHRGGQLHGAR
Sbjct: 431 CHYDNAELTLNVALGKTFTGGALYFGGLFQAPSALARPLEVEHVVGQGILHRGGQLHGAR 490
Query: 936 PLGTGERWNLXVWLRASAVRNRPLPMCCPQP 1028
PLGTGERWNL +WLRASAVRNR PMCC +P
Sbjct: 491 PLGTGERWNLVIWLRASAVRNRLCPMCCRKP 521
>ref|XP_536856.2| PREDICTED: similar to procollagen-lysine, 2-oxoglutarate
5-dioxygenase 3 precursor isoform 1 [Canis familiaris].
Length = 740
Score = 49.7 bits (117), Expect = 5e-06
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Frame = +3
Query: 471 IYRLPVFTAPFCQALLQELEHF--------EQSDLPKGRPNTMNNYGVLLYELGLDEPLV 626
+Y P+ + C L++E+EH+ E S L G N + + + ++G ++ +
Sbjct: 568 VYWFPLLSDQMCDELVEEMEHYGQWSGGRHEDSRLAGGYEN-VPTVDIHMKQVGYEDQWL 626
Query: 627 TPLRERFLQPLMALLYPDCGGGWLDSHRA---FVVKYAPGQDRELGCHYDNAELTLNVSL 797
LR ++ P+ L+P G+ RA FVV+Y P + L H+D++ TLNV+L
Sbjct: 627 QLLRT-YVGPMTESLFP----GYHTKTRAVMNFVVRYRPDEQPSLRPHHDSSTFTLNVAL 681
Query: 798 ---GKAFTGGALYFGDLFQVPSALAHPLEVEHVVGQGILHRGGQLH 926
G + GG F + ++ P + G G+LH G H
Sbjct: 682 NHKGLDYEGGGCRF---LRYDCIVSSPRK-----GWGLLHPGRLTH 719
>ref|XP_858413.1| PREDICTED: similar to procollagen-lysine, 2-oxoglutarate
5-dioxygenase 3 precursor isoform 2 [Canis familiaris].
Length = 754
Score = 49.7 bits (117), Expect = 5e-06
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Frame = +3
Query: 471 IYRLPVFTAPFCQALLQELEHF--------EQSDLPKGRPNTMNNYGVLLYELGLDEPLV 626
+Y P+ + C L++E+EH+ E S L G N + + + ++G ++ +
Sbjct: 582 VYWFPLLSDQMCDELVEEMEHYGQWSGGRHEDSRLAGGYEN-VPTVDIHMKQVGYEDQWL 640
Query: 627 TPLRERFLQPLMALLYPDCGGGWLDSHRA---FVVKYAPGQDRELGCHYDNAELTLNVSL 797
LR ++ P+ L+P G+ RA FVV+Y P + L H+D++ TLNV+L
Sbjct: 641 QLLRT-YVGPMTESLFP----GYHTKTRAVMNFVVRYRPDEQPSLRPHHDSSTFTLNVAL 695
Query: 798 ---GKAFTGGALYFGDLFQVPSALAHPLEVEHVVGQGILHRGGQLH 926
G + GG F + ++ P + G G+LH G H
Sbjct: 696 NHKGLDYEGGGCRF---LRYDCIVSSPRK-----GWGLLHPGRLTH 733
>ref|XP_865470.1| PREDICTED: similar to Procollagen-lysine,2-oxoglutarate
5-dioxygenase 1 precursor (Lysyl hydroxylase 1) (LH1)
isoform 3 [Canis familiaris].
Length = 728
Score = 49.3 bits (116), Expect = 6e-06
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Frame = +3
Query: 471 IYRLPVFTAPFCQALLQELEHFEQSDLPKGRPNTMNNYGVLLYELGLDEPLVTPLRE--- 641
+Y P+FT C L++E+EH+ Q L + N + + + + ++ RE
Sbjct: 555 VYWFPIFTETACDELVEEMEHYGQWSLGDNKDNRIQGGYENVPTIDIHMNQISFEREWHK 614
Query: 642 ---RFLQPLMALLYPDCGGGWLDSHRAFVVKYAPGQDRELGCHYDNAELTLNVSL---GK 803
++ P+ LYP AFVV+Y P + L H+D + T+N++L G
Sbjct: 615 FLVEYIAPMTEKLYPGYYTRPPKFDLAFVVRYKPDEQPSLMPHHDASTFTINIALNRVGV 674
Query: 804 AFTGGALYF 830
+ GG F
Sbjct: 675 DYEGGGCRF 683
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,415,463
Number of extensions: 1109532
Number of successful extensions: 4396
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4375
Number of HSP's successfully gapped: 4
Length of query: 344
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 240
Effective length of database: 15,407,560
Effective search space: 3697814400
Effective search space used: 3697814400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003453
(1032 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_078899.1| 2-oxoglutarate and iron-dependent oxygenase dom... 429 e-120
Alignment gi|NP_000293.2| procollagen-lysine,2-oxoglutarate 5-dioxygenase... 51 2e-06
>ref|NP_078899.1| 2-oxoglutarate and iron-dependent oxygenase domain-containing protein
2 [Homo sapiens].
Length = 290
Score = 429 bits (1103), Expect = e-120
Identities = 207/247 (83%), Positives = 218/247 (88%)
Frame = +3
Query: 288 SAARKALIASSYHPVRPDIYSLLQDXXXXXXXXXXXXYSTSPGADLKGLLQRLETVSEEK 467
SAARKALIASSYHP RP++Y LQD YS SP ADLKGLLQRLETVSEEK
Sbjct: 18 SAARKALIASSYHPARPEVYDSLQDAALAPEFLAVTEYSVSPDADLKGLLQRLETVSEEK 77
Query: 468 RIYRLPVFTAPFCQALLQELEHFEQSDLPKGRPNTMNNYGVLLYELGLDEPLVTPLRERF 647
RIYR+PVFTAPFCQALL+ELEHFEQSD+PKGRPNTMNNYGVLL+ELGLDEPL+TPLRERF
Sbjct: 78 RIYRVPVFTAPFCQALLEELEHFEQSDMPKGRPNTMNNYGVLLHELGLDEPLMTPLRERF 137
Query: 648 LQPLMALLYPDCGGGWLDSHRAFVVKYAPGQDRELGCHYDNAELTLNVSLGKAFTGGALY 827
LQPLMALLYPDCGGG LDSHRAFVVKYAPGQD ELGCHYDNAELTLNV+LGK FTGGALY
Sbjct: 138 LQPLMALLYPDCGGGRLDSHRAFVVKYAPGQDLELGCHYDNAELTLNVALGKVFTGGALY 197
Query: 828 FGDLFQVPSALAHPLEVEHVVGQGILHRGGQLHGARPLGTGERWNLXVWLRASAVRNRPL 1007
FG LFQ P+AL PLEVEHVVGQG+LHRGGQLHGARPLGTGERWNL VWLRASAVRN
Sbjct: 198 FGGLFQAPTALTEPLEVEHVVGQGVLHRGGQLHGARPLGTGERWNLVVWLRASAVRNSLC 257
Query: 1008 PMCCPQP 1028
PMCC +P
Sbjct: 258 PMCCREP 264
>ref|NP_000293.2| procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 precursor [Homo
sapiens].
Length = 727
Score = 51.2 bits (121), Expect = 2e-06
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 13/133 (9%)
Frame = +3
Query: 471 IYRLPVFTAPFCQALLQELEHFEQSDLPKGRPNTMN-------NYGVLLYELGLDEPLVT 629
+Y P+FT C L++E+EHF Q L + N + + + ++G +
Sbjct: 555 VYWFPIFTEVACDELVEEMEHFGQWSLGNNKDNRIQGGYENVPTIDIHMNQIGFEREWHK 614
Query: 630 PLRERFLQPLMALLYPDCGGGWLDSHR---AFVVKYAPGQDRELGCHYDNAELTLNVSL- 797
L E ++ P+ LYP G+ + AFVV+Y P + L H+D + T+N++L
Sbjct: 615 FLLE-YIAPMTEKLYP----GYYTRAQFDLAFVVRYKPDEQPSLMPHHDASTFTINIALN 669
Query: 798 --GKAFTGGALYF 830
G + GG F
Sbjct: 670 RVGVDYEGGGCRF 682
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,523,471
Number of extensions: 1076396
Number of successful extensions: 3930
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3924
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,901,872
Effective search space: 3591351152
Effective search space used: 3591351152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003453
(1032 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079947.1| 2-oxoglutarate and iron-dependent oxygenase dom... 489 e-138
Alignment gi|NP_035252.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase... 51 1e-06
Alignment gi|NP_036092.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase... 50 3e-06
Alignment gi|NP_001136388.1| procollagen-lysine,2-oxoglutarate 5-dioxygen... 49 8e-06
Alignment gi|NP_036091.2| procollagen-lysine,2-oxoglutarate 5-dioxygenase... 49 8e-06
>ref|NP_079947.1| 2-oxoglutarate and iron-dependent oxygenase domain-containing protein
2 [Mus musculus].
Length = 349
Score = 489 bits (1260), Expect = e-138
Identities = 239/321 (74%), Positives = 262/321 (81%)
Frame = +3
Query: 69 AAPVRFCRCACFCSENLYVARYALHVRFRNEQQLRQDYGPILRSRGCVSAKDFXXXXXXX 248
AA RFCRCACFCS+NLYVARY LH+RFR+E QLR+DYG +LRSRGCV++KDF
Sbjct: 4 AAQRRFCRCACFCSQNLYVARYGLHLRFRDEHQLRRDYGQLLRSRGCVTSKDFQQLLEEL 63
Query: 249 XXXXXXXXXXXXXSAARKALIASSYHPVRPDIYSLLQDXXXXXXXXXXXXYSTSPGADLK 428
SA RKALIASSYHP RP++YS LQD YSTSPGADL+
Sbjct: 64 EQEVGRRRRLGQESAVRKALIASSYHPARPEVYSSLQDAALAPEFMAAAEYSTSPGADLE 123
Query: 429 GLLQRLETVSEEKRIYRLPVFTAPFCQALLQELEHFEQSDLPKGRPNTMNNYGVLLYELG 608
GLLQRLETVSEEKRIYR+PVF+A FCQ LL+ELEHFEQSD+PKGRPNTMNN+GVL+YELG
Sbjct: 124 GLLQRLETVSEEKRIYRVPVFSAKFCQTLLEELEHFEQSDMPKGRPNTMNNHGVLMYELG 183
Query: 609 LDEPLVTPLRERFLQPLMALLYPDCGGGWLDSHRAFVVKYAPGQDRELGCHYDNAELTLN 788
LD+PLVTPLRERFL PLMALLYPD GGG+LDSHRAFVVKYA GQD +LGCHYDNAELTLN
Sbjct: 184 LDDPLVTPLRERFLLPLMALLYPDYGGGYLDSHRAFVVKYALGQDLDLGCHYDNAELTLN 243
Query: 789 VSLGKAFTGGALYFGDLFQVPSALAHPLEVEHVVGQGILHRGGQLHGARPLGTGERWNLX 968
V+LGK FTGGALYFG LFQ P+AL LEVEHVVG GILHRGGQLHGARPL GERWNL
Sbjct: 244 VALGKDFTGGALYFGGLFQAPAALKETLEVEHVVGSGILHRGGQLHGARPLCKGERWNLV 303
Query: 969 VWLRASAVRNRPLPMCCPQPQ 1031
VWLRASAVRNR PMCC +P+
Sbjct: 304 VWLRASAVRNRLCPMCCQKPE 324
>ref|NP_035252.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 precursor [Mus
musculus].
Length = 728
Score = 51.2 bits (121), Expect = 1e-06
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 18/156 (11%)
Frame = +3
Query: 471 IYRLPVFTAPFCQALLQELEHFEQSDLPKGRPNTMNNYGVLLYELGLDEPLVTPLRE--- 641
+Y P+FT C L++E+EH+ Q L + N + + + + +T RE
Sbjct: 556 VYWFPIFTEAACDELVEEMEHYGQWSLGDNKDNRIQGGYENVPTIDIHMNQITFEREWHK 615
Query: 642 ---RFLQPLMALLYPDCGGGWLDSHR---AFVVKYAPGQDRELGCHYDNAELTLNVSL-- 797
++ P+ LYP G+ + AFVV+Y P + L H+D + T+N++L
Sbjct: 616 FLVEYIAPMTEKLYP----GYYTRAQFDLAFVVRYKPDEQPSLMPHHDASTFTVNIALNR 671
Query: 798 -GKAFTGGA---LYFGDLFQVPS---ALAHPLEVEH 884
G+ + GG L + + P AL HP + H
Sbjct: 672 VGEDYEGGGCRFLRYNCSVRAPRKGWALLHPGRLTH 707
>ref|NP_036092.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 precursor [Mus
musculus].
Length = 741
Score = 50.1 bits (118), Expect = 3e-06
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 14/134 (10%)
Frame = +3
Query: 471 IYRLPVFTAPFCQALLQELEHF--------EQSDLPKGRPNTMNNYGVLLYELGLDEPLV 626
+Y P+ T C L++E+EH+ E S L G N + + + ++G ++ +
Sbjct: 569 VYWFPLLTEQMCDELVEEMEHYGQWSGGRHEDSRLAGGYEN-VPTVDIHMKQVGYEDQWL 627
Query: 627 TPLRERFLQPLMALLYPDCGGGWLDSHRA---FVVKYAPGQDRELGCHYDNAELTLNVSL 797
LR ++ P+ L+P G+ RA FVV+Y P + L H+D++ TLNV+L
Sbjct: 628 QLLRT-YVGPMTEYLFP----GYHTKTRAVMNFVVRYRPDEQPSLRPHHDSSTFTLNVAL 682
Query: 798 ---GKAFTGGALYF 830
G + GG F
Sbjct: 683 NHKGVDYEGGGCRF 696
>ref|NP_001136388.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform 1 [Mus
musculus].
Length = 758
Score = 48.5 bits (114), Expect = 8e-06
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 16/179 (8%)
Frame = +3
Query: 471 IYRLPVFTAPFCQALLQELEHF--------EQSDLPKGRPNTMNNYGVLLYELGLDEPLV 626
++ P+F+ C L++E+EH+ S + G N + + + ++GL+ +
Sbjct: 586 VFWFPIFSERACDELVEEMEHYGKWSGGKHHDSRISGGYENVPTD-DIHMKQIGLENVWL 644
Query: 627 TPLRERFLQPLMALLYPDCGGGWLDSHRA---FVVKYAPGQDRELGCHYDNAELTLNVSL 797
+RE F+ P+ ++ G+ A FVVKY+P + R L H+D + T+N++L
Sbjct: 645 HFIRE-FIAPVTLKVF----AGYYTKGFALLNFVVKYSPERQRSLRPHHDASTFTINIAL 699
Query: 798 ---GKAFTGGALYFGDLFQVPSALAHPLEVEHVVGQGILHRG--GQLHGARPLGTGERW 959
G+ F GG F + ++ P + G +H G LH P+ G R+
Sbjct: 700 NNVGEDFQGGGCKF---LRYNCSIESPRK-----GWSFMHPGRLTHLHEGLPVKNGTRY 750
>ref|NP_036091.2| procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform 2 [Mus
musculus].
Length = 737
Score = 48.5 bits (114), Expect = 8e-06
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 16/179 (8%)
Frame = +3
Query: 471 IYRLPVFTAPFCQALLQELEHF--------EQSDLPKGRPNTMNNYGVLLYELGLDEPLV 626
++ P+F+ C L++E+EH+ S + G N + + + ++GL+ +
Sbjct: 565 VFWFPIFSERACDELVEEMEHYGKWSGGKHHDSRISGGYENVPTD-DIHMKQIGLENVWL 623
Query: 627 TPLRERFLQPLMALLYPDCGGGWLDSHRA---FVVKYAPGQDRELGCHYDNAELTLNVSL 797
+RE F+ P+ ++ G+ A FVVKY+P + R L H+D + T+N++L
Sbjct: 624 HFIRE-FIAPVTLKVF----AGYYTKGFALLNFVVKYSPERQRSLRPHHDASTFTINIAL 678
Query: 798 ---GKAFTGGALYFGDLFQVPSALAHPLEVEHVVGQGILHRG--GQLHGARPLGTGERW 959
G+ F GG F + ++ P + G +H G LH P+ G R+
Sbjct: 679 NNVGEDFQGGGCKF---LRYNCSIESPRK-----GWSFMHPGRLTHLHEGLPVKNGTRY 729
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,180,531
Number of extensions: 881758
Number of successful extensions: 3090
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3083
Number of HSP's successfully gapped: 5
Length of query: 344
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 242
Effective length of database: 12,553,887
Effective search space: 3038040654
Effective search space used: 3038040654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003453
(1032 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928599.1| PREDICTED: 2-oxoglutarate and iron-dependent... 584 e-167
Alignment gi|XP_003127625.1| PREDICTED: procollagen-lysine,2-oxoglutarate... 49 6e-06
>ref|XP_001928599.1| PREDICTED: 2-oxoglutarate and iron-dependent oxygenase
domain-containing protein 2 [Sus scrofa].
Length = 350
Score = 584 bits (1505), Expect = e-167
Identities = 288/325 (88%), Positives = 289/325 (88%)
Frame = +3
Query: 57 MGTAAAPVRFCRCACFCSENLYVARYALHVRFRNEQQLRQDYGPILRSRGCVSAKDFXXX 236
MGTAAAPVRFCRCACFCSENLYVARYALHVRFRNEQQLRQDYGPILRSRGCVSAKDF
Sbjct: 1 MGTAAAPVRFCRCACFCSENLYVARYALHVRFRNEQQLRQDYGPILRSRGCVSAKDFQQL 60
Query: 237 XXXXXXXXXXXXXXXXXSAARKALIASSYHPVRPDIYSLLQDXXXXXXXXXXXXYSTSPG 416
SAARKALIASSYHPVRPDIYSLLQD YSTSPG
Sbjct: 61 LGELEQEVERRQRLGQESAARKALIASSYHPVRPDIYSLLQDEALAPEFLAAAEYSTSPG 120
Query: 417 ADLKGLLQRLETVSEEKRIYRLPVFTAPFCQALLQELEHFEQSDLPKGRPNTMNNYGVLL 596
ADLKGLLQRLETVSEEKRIYRLPVFTAPFCQALLQELEHFEQSDLPKGRPNTMNNYGVLL
Sbjct: 121 ADLKGLLQRLETVSEEKRIYRLPVFTAPFCQALLQELEHFEQSDLPKGRPNTMNNYGVLL 180
Query: 597 YELGLDEPLVTPLRERFLQPLMALLYPDCGGGWLDSHRAFVVKYAPGQDRELGCHYDNAE 776
YELGLDEPLVTPLRERFLQPLMALLYPDCGGGWLDSHRAFVVKYAPGQDRELGCHYDNAE
Sbjct: 181 YELGLDEPLVTPLRERFLQPLMALLYPDCGGGWLDSHRAFVVKYAPGQDRELGCHYDNAE 240
Query: 777 LTLNVSLGKAFTGGALYFGDLFQVPSALAHPLEVEHVVGQGILHRGGQLHGARPLGTGER 956
LTLNVSLGKAFTGGALYFGDLFQVPSALAHPLEVEHVVGQGILHRGGQLHGARPLGTGER
Sbjct: 241 LTLNVSLGKAFTGGALYFGDLFQVPSALAHPLEVEHVVGQGILHRGGQLHGARPLGTGER 300
Query: 957 WNLXVWLRASAVRNRPLPMCCPQPQ 1031
WNL VWLRASAVRNR PMCC +PQ
Sbjct: 301 WNLVVWLRASAVRNRLCPMCCRKPQ 325
>ref|XP_003127625.1| PREDICTED: procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like
[Sus scrofa].
Length = 725
Score = 48.5 bits (114), Expect = 6e-06
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 12/132 (9%)
Frame = +3
Query: 471 IYRLPVFTAPFCQALLQELEHFEQSDLPKGRPNTMNNYGVLLYELGLDEPLVTPLRE--- 641
+Y P+FT C L++E+EH+ Q L + N + + + + ++ RE
Sbjct: 553 VYWFPIFTETACDELVEEMEHYGQWSLGDNKDNRIQGGYENVPTIDIHMNQISFEREWHK 612
Query: 642 ---RFLQPLMALLYPDCGGGWLDSHR---AFVVKYAPGQDRELGCHYDNAELTLNVSL-- 797
++ P+ LYP G+ + AFVV+Y P + L H+D + T+N++L
Sbjct: 613 FLVEYIAPMTEKLYP----GYYTRAQFDLAFVVRYKPDEQPSLMPHHDASTFTINIALNR 668
Query: 798 -GKAFTGGALYF 830
G + GG F
Sbjct: 669 VGVDYEGGGCRF 680
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,152,360
Number of extensions: 701069
Number of successful extensions: 2828
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2822
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 244
Effective length of database: 8,854,232
Effective search space: 2160432608
Effective search space used: 2160432608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003453
(1032 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 517 e-144
>Sscrofa_Chr14
|| Length = 153851969
Score = 517 bits (261), Expect = e-144
Identities = 261/261 (100%)
Strand = Plus / Minus
Query: 587 ggtattgctctacgagctgggcctggatgaaccactggtgacaccactgcgggagcgctt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31579206 ggtattgctctacgagctgggcctggatgaaccactggtgacaccactgcgggagcgctt 31579147
Query: 647 cctgcagccactgatggccctgctgtacccagactgtggtgggggctggctggacagcca 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31579146 cctgcagccactgatggccctgctgtacccagactgtggtgggggctggctggacagcca 31579087
Query: 707 ccgtgccttcgtggtcaaatatgcaccaggccaggaccgagagctgggttgccactatga 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31579086 ccgtgccttcgtggtcaaatatgcaccaggccaggaccgagagctgggttgccactatga 31579027
Query: 767 taatgccgagctcaccctcaacgtgtccctgggcaaggccttcacagggggcgccttata 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31579026 taatgccgagctcaccctcaacgtgtccctgggcaaggccttcacagggggcgccttata 31578967
Query: 827 ctttggagacctcttccaggt 847
|||||||||||||||||||||
Sbjct: 31578966 ctttggagacctcttccaggt 31578946
Score = 345 bits (174), Expect = 3e-92
Identities = 188/190 (98%), Gaps = 2/190 (1%)
Strand = Plus / Minus
Query: 1 ggggcgtacccggaa-tgcccctacg-aaaccggtggggctgctcgcggctcttcaccat 58
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 31583401 ggggcgtacccggaagtgcccctacggaaaccggtggggctgctcgcggctcttcaccat 31583342
Query: 59 ggggaccgcggcggctcctgtgcgcttctgccgctgcgcttgcttctgctctgagaacct 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31583341 ggggaccgcggcggctcctgtgcgcttctgccgctgcgcttgcttctgctctgagaacct 31583282
Query: 119 gtacgtggcgcgctatgcgctgcacgtgcgctttcggaacgagcaacagctgcgccagga 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31583281 gtacgtggcgcgctatgcgctgcacgtgcgctttcggaacgagcaacagctgcgccagga 31583222
Query: 179 ctacggcccg 188
||||||||||
Sbjct: 31583221 ctacggcccg 31583212
Score = 276 bits (139), Expect = 2e-71
Identities = 169/179 (94%), Gaps = 2/179 (1%)
Strand = Plus / Minus
Query: 843 caggtgccttcagccctggcccatccgctggaggtggagcacgtggtgggccagggcatc 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31578876 caggtgccttcagccctggcccatccgctggaggtggagcacgtggtgggccagggcatc 31578817
Query: 903 ctgcatcnnnnnnnccagctgcacggggccaggcccctgggcaccggtgagcgctggaac 962
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31578816 ctgcatcgggggggccagctgcacggggccaggcccctgggcaccggtgagcgctggaac 31578757
Query: 963 ctggntgtctggctccgggcctctgctgtgcgcaaccgccctctg-cccatgtgctgcc 1020
|||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 31578756 ctggttgtctggctccgggcctctgctgtgcgcaaccg-cctctgccccatgtgctgcc 31578699
Score = 264 bits (133), Expect = 9e-68
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 457 cagaggagaagcgtatctaccggctgccagtgttcacagcgccgttctgccaggcgctgc 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31579589 cagaggagaagcgtatctaccggctgccagtgttcacagcgccgttctgccaggcgctgc 31579530
Query: 517 tgcaggagctggagcacttcgagcagtcagacttgcccaaaggaagacccaacaccatga 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31579529 tgcaggagctggagcacttcgagcagtcagacttgcccaaaggaagacccaacaccatga 31579470
Query: 577 acaactatggggt 589
|||||||||||||
Sbjct: 31579469 acaactatggggt 31579457
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 244 agcttgagcaggaagtggagcggcggcagcggctggggcaggagtcagctgccaggaaag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31581704 agcttgagcaggaagtggagcggcggcagcggctggggcaggagtcagctgccaggaaag 31581645
Query: 304 ccctcattgcaagttcctaccaccccgttcggcctgatatctacagcttgctgcagg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31581644 ccctcattgcaagttcctaccaccccgttcggcctgatatctacagcttgctgcagg 31581588
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 358 aggatgaggctctggcccccgagtttctggctgcagctgagtacagcacgtcaccaggcg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31581501 aggatgaggctctggcccccgagtttctggctgcagctgagtacagcacgtcaccaggcg 31581442
Query: 418 cagacctcaagggccttctccagcggctggagacagtgtcag 459
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31581441 cagacctcaagggccttctccagcggctggagacagtgtcag 31581400
Score = 115 bits (58), Expect = 5e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 188 gatcttgcgcagtcgaggctgtgtcagcgccaaggacttccagcagctgttaggagag 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31582768 gatcttgcgcagtcgaggctgtgtcagcgccaaggacttccagcagctgttaggagag 31582711
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,403,608
Number of extensions: 140
Number of successful extensions: 140
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 7
Length of query: 1032
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1011
Effective length of database: 2,808,413,156
Effective search space: 2839305700716
Effective search space used: 2839305700716
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)