Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003456
(1052 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002691500.1| PREDICTED: solute carrier family 4 (anion ex... 574 e-164
Alignment gi|XP_874234.2| PREDICTED: solute carrier family 4 (anion excha... 574 e-164
Alignment gi|NP_777007.1| nuclear inhibitor of protein phosphatase 1 [Bos... 66 6e-11
Alignment gi|NP_001192853.1| Smad nuclear interacting protein 1 [Bos taur... 65 8e-11
Alignment gi|XP_002686515.1| PREDICTED: Smad nuclear interacting protein-... 65 8e-11
Alignment gi|XP_002694036.1| PREDICTED: centrosomal protein 170kDa [Bos t... 62 8e-10
Alignment gi|NP_001030454.2| centrosomal protein 170kDa [Bos taurus]. 59 9e-09
Alignment gi|XP_002701580.1| PREDICTED: centrosomal protein 170kDa [Bos t... 59 9e-09
Alignment gi|XP_001788910.1| PREDICTED: centrosomal protein 170kDa isofor... 59 9e-09
Alignment gi|XP_600317.5| PREDICTED: Smad nuclear interacting protein-lik... 53 4e-07
>ref|XP_002691500.1| PREDICTED: solute carrier family 4 (anion exchanger), member 1,
adaptor protein [Bos taurus].
Length = 740
Score = 574 bits (1479), Expect = e-164
Identities = 279/325 (85%), Positives = 293/325 (90%)
Frame = +2
Query: 17 MADSTSQSDPLASQELNGDFKKPALPVAPSERSKVTATSTSNPEEVKKERPTALPDSDSA 196
MADS SQS+PLAS EL+ DFKKP+LP+ + RSK A + NPEEVK ER TALPDSDS
Sbjct: 1 MADSPSQSEPLASPELDDDFKKPSLPMPSAARSKAPANNPPNPEEVK-ERSTALPDSDSG 59
Query: 197 EPDALPAQPDSGETRGPAKEQPRPPTAAPSPGCPARAPPYREPPWGGPATAPYGLEALKG 376
EPD PA PDSGE RGPA+EQPRP TAAPSPGC ARAPPYREPPWGGP TAPY LE LKG
Sbjct: 60 EPDVPPALPDSGENRGPAEEQPRPHTAAPSPGCSARAPPYREPPWGGPTTAPYSLETLKG 119
Query: 377 GTILGSRSLKGMSCCLFGRLPSCDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLY 556
GTILG+R+LKG+SCCLFGRLPSCDVCLEHPSVSRYHAVLQHRVS DAE DGHGPGFYLY
Sbjct: 120 GTILGTRNLKGLSCCLFGRLPSCDVCLEHPSVSRYHAVLQHRVSGLDAEGDGHGPGFYLY 179
Query: 557 DLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTRLFLLQGPEEDREAESELTVTQLKE 736
DLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTRLFLLQGPEEDREAESELT+TQLKE
Sbjct: 180 DLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTRLFLLQGPEEDREAESELTITQLKE 239
Query: 737 LRKQQQMMLEKKMLGEDSDEEEEMDTAERKRNTSSQDDEMGCTWGMGEDAVKDEAEENPI 916
LRKQQQMMLEKKMLGEDSDEEEEMDTA+RKR+TSSQDDEMGCTWGMGEDAV+DEAEENPI
Sbjct: 240 LRKQQQMMLEKKMLGEDSDEEEEMDTADRKRSTSSQDDEMGCTWGMGEDAVEDEAEENPI 299
Query: 917 VLEFQQEREAFLYKGSKKGPQGFFD 991
VLEFQQEREAF K KK QGFFD
Sbjct: 300 VLEFQQEREAFYIKDPKKALQGFFD 324
Score = 58.5 bits (140), Expect = 9e-09
Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +3
Query: 903 KRTPLF*SFSRKGRPFYIKDPKKALKVFLTRX-RRIRYEFDETGHSTWLCR 1052
+ P+ F ++ FYIKDPKKAL+ F R + YEFDE GHSTWLCR
Sbjct: 295 EENPIVLEFQQEREAFYIKDPKKALQGFFDREGEELEYEFDEQGHSTWLCR 345
>ref|XP_874234.2| PREDICTED: solute carrier family 4 (anion exchanger), member 1,
adaptor protein [Bos taurus].
Length = 740
Score = 574 bits (1479), Expect = e-164
Identities = 279/325 (85%), Positives = 293/325 (90%)
Frame = +2
Query: 17 MADSTSQSDPLASQELNGDFKKPALPVAPSERSKVTATSTSNPEEVKKERPTALPDSDSA 196
MADS SQS+PLAS EL+ DFKKP+LP+ + RSK A + NPEEVK ER TALPDSDS
Sbjct: 1 MADSPSQSEPLASPELDDDFKKPSLPMPSAARSKAPANNPPNPEEVK-ERSTALPDSDSG 59
Query: 197 EPDALPAQPDSGETRGPAKEQPRPPTAAPSPGCPARAPPYREPPWGGPATAPYGLEALKG 376
EPD PA PDSGE RGPA+EQPRP TAAPSPGC ARAPPYREPPWGGP TAPY LE LKG
Sbjct: 60 EPDVPPALPDSGENRGPAEEQPRPHTAAPSPGCSARAPPYREPPWGGPTTAPYSLETLKG 119
Query: 377 GTILGSRSLKGMSCCLFGRLPSCDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLY 556
GTILG+R+LKG+SCCLFGRLPSCDVCLEHPSVSRYHAVLQHRVS DAE DGHGPGFYLY
Sbjct: 120 GTILGTRNLKGLSCCLFGRLPSCDVCLEHPSVSRYHAVLQHRVSGLDAEGDGHGPGFYLY 179
Query: 557 DLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTRLFLLQGPEEDREAESELTVTQLKE 736
DLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTRLFLLQGPEEDREAESELT+TQLKE
Sbjct: 180 DLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTRLFLLQGPEEDREAESELTITQLKE 239
Query: 737 LRKQQQMMLEKKMLGEDSDEEEEMDTAERKRNTSSQDDEMGCTWGMGEDAVKDEAEENPI 916
LRKQQQMMLEKKMLGEDSDEEEEMDTA+RKR+TSSQDDEMGCTWGMGEDAV+DEAEENPI
Sbjct: 240 LRKQQQMMLEKKMLGEDSDEEEEMDTADRKRSTSSQDDEMGCTWGMGEDAVEDEAEENPI 299
Query: 917 VLEFQQEREAFLYKGSKKGPQGFFD 991
VLEFQQEREAF K KK QGFFD
Sbjct: 300 VLEFQQEREAFYIKDPKKALQGFFD 324
Score = 58.5 bits (140), Expect = 9e-09
Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +3
Query: 903 KRTPLF*SFSRKGRPFYIKDPKKALKVFLTRX-RRIRYEFDETGHSTWLCR 1052
+ P+ F ++ FYIKDPKKAL+ F R + YEFDE GHSTWLCR
Sbjct: 295 EENPIVLEFQQEREAFYIKDPKKALQGFFDREGEELEYEFDEQGHSTWLCR 345
>ref|NP_777007.1| nuclear inhibitor of protein phosphatase 1 [Bos taurus].
Length = 351
Score = 65.9 bits (159), Expect = 6e-11
Identities = 53/180 (29%), Positives = 75/180 (41%), Gaps = 6/180 (3%)
Frame = +2
Query: 308 PPYREPPWGGPATAPYGLEALKGGTILGSRSLKGMSCCLFGRLPS-CDVCLEHPSVSRYH 484
P + P W G L+ +KG ++ + LFGR P CD ++H S SR H
Sbjct: 12 PLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVH 71
Query: 485 AVLQHRVSSPDAESDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTR 664
A L + H +L DL STHGTFL R+ P ++ + + FG STR
Sbjct: 72 AALVYHK---------HLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTR 122
Query: 665 LFLLQGPEEDREAESELTVTQLKELRKQQQMMLEKKMLGEDSDEEE-----EMDTAERKR 829
+ L RE L + + + K +LG +E E E +TA KR
Sbjct: 123 AYTL------REKPQTLPSAVKGDEKMGGEDDELKGLLGLPEEETELDNLTEFNTAHNKR 176
>ref|NP_001192853.1| Smad nuclear interacting protein 1 [Bos taurus].
Length = 399
Score = 65.5 bits (158), Expect = 8e-11
Identities = 60/197 (30%), Positives = 86/197 (43%), Gaps = 21/197 (10%)
Frame = +2
Query: 191 SAEPDALPAQPDSGETRG---PAKEQPRPPTAAP----SPGCPARAPPYREPPWGGPATA 349
+A DALP G + P KE+P + + Y EPP
Sbjct: 201 NASQDALPRPGPGGNNKDREVPVKEKPSFELSGALLEDTNTFRGVVIKYSEPPEARIPKK 260
Query: 350 PYGLEALKGGTILGSRSLKGMSCCLFGRLPS-CDVCLEHPSVSRYHAVLQHR-VSSPDAE 523
+ L K +L + S L GR D+ ++HPS S+ HAV Q+R V A+
Sbjct: 261 RWRLYPFKNDEVLPVMYIHRQSAYLLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRAD 320
Query: 524 SD-GHGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTRLFLL-------- 676
G Y+ DLGS +GTFLN RI P+ Y + VL+FG S+R ++L
Sbjct: 321 GTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVLKFGFSSREYVLLHESSDTS 380
Query: 677 ---QGPEEDREAESELT 718
+ +ED E E E++
Sbjct: 381 EVDRKEDEDDEEEEEVS 397
>ref|XP_002686515.1| PREDICTED: Smad nuclear interacting protein-like [Bos taurus].
Length = 399
Score = 65.5 bits (158), Expect = 8e-11
Identities = 60/197 (30%), Positives = 86/197 (43%), Gaps = 21/197 (10%)
Frame = +2
Query: 191 SAEPDALPAQPDSGETRG---PAKEQPRPPTAAP----SPGCPARAPPYREPPWGGPATA 349
+A DALP G + P KE+P + + Y EPP
Sbjct: 201 NASQDALPRPGPGGNNKDREVPVKEKPSFELSGALLEDTNTFRGVVIKYSEPPEARIPKK 260
Query: 350 PYGLEALKGGTILGSRSLKGMSCCLFGRLPS-CDVCLEHPSVSRYHAVLQHR-VSSPDAE 523
+ L K +L + S L GR D+ ++HPS S+ HAV Q+R V A+
Sbjct: 261 RWRLYPFKNDEVLPVMYIHRQSAYLLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRAD 320
Query: 524 SD-GHGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTRLFLL-------- 676
G Y+ DLGS +GTFLN RI P+ Y + VL+FG S+R ++L
Sbjct: 321 GTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVLKFGFSSREYVLLHESSDTS 380
Query: 677 ---QGPEEDREAESELT 718
+ +ED E E E++
Sbjct: 381 EVDRKEDEDDEEEEEVS 397
>ref|XP_002694036.1| PREDICTED: centrosomal protein 170kDa [Bos taurus].
Length = 1540
Score = 62.0 bits (149), Expect = 8e-10
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 7/176 (3%)
Frame = +2
Query: 443 CDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYCR 622
C++ L+ SV + HAV+ + DA +D H + DLGS +GTF+N RIP +TY
Sbjct: 30 CELMLQSRSVDKQHAVINY-----DASTDEH----LVKDLGSLNGTFVNDVRIPEQTYIT 80
Query: 623 VHVGHVLRFGGSTRLFL-----LQGPEEDREAESELTVTQLKELRKQQQMMLEKKMLGED 787
+ + LRFG T LF ++ PEE + E QL + + ++ D
Sbjct: 81 LKLEDKLRFGYDTNLFTVVRGEMRVPEEALKHEKFTIQLQLSQKSSESELSKSACAKSID 140
Query: 788 SDEEEEMDTAERKRNTSSQDDE--MGCTWGMGEDAVKDEAEENPIVLEFQQEREAF 949
S + + K + + +E +GC+ + + A ++ F +E F
Sbjct: 141 SKVADSATEVQHKPTEALKSEEKVVGCSIDAKQVEEQSAAASEEVLFPFCREPSYF 196
>ref|NP_001030454.2| centrosomal protein 170kDa [Bos taurus].
Length = 1585
Score = 58.5 bits (140), Expect = 9e-09
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Frame = +2
Query: 443 CDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYCR 622
C++ L+ SV + HAV+ + DA +D H + DLGS +GTF+N RIP +TY
Sbjct: 30 CELMLQSRSVDKQHAVINY-----DASTDEH----LVKDLGSLNGTFVNDVRIPEQTYIT 80
Query: 623 VHVGHVLRFGGSTRLFL-----LQGPEEDREAESELTVTQLKELRKQQQMMLEKKMLGED 787
+ + LRFG T LF ++ PEE + E QL + + ++ D
Sbjct: 81 LKLEDKLRFGYDTNLFTVVRGEMRVPEEALKHEKFTIQLQLSQKSSESELSKSACAKSID 140
Query: 788 SDEEEEMDTAERKRNTSSQDDE 853
S + + K + + +E
Sbjct: 141 SKVADSATEVQHKPTEALKSEE 162
>ref|XP_002701580.1| PREDICTED: centrosomal protein 170kDa [Bos taurus].
Length = 1487
Score = 58.5 bits (140), Expect = 9e-09
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Frame = +2
Query: 443 CDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYCR 622
C++ L+ SV + HAV+ + DA +D H + DLGS +GTF+N RIP +TY
Sbjct: 30 CELMLQSRSVDKQHAVINY-----DASTDEH----LVKDLGSLNGTFVNDVRIPEQTYIT 80
Query: 623 VHVGHVLRFGGSTRLFL-----LQGPEEDREAESELTVTQLKELRKQQQMMLEKKMLGED 787
+ + LRFG T LF ++ PEE + E QL + + ++ D
Sbjct: 81 LKLEDKLRFGYDTNLFTVVRGEMRVPEEALKHEKFTIQLQLSQKSSESELSKSACAKSID 140
Query: 788 SDEEEEMDTAERKRNTSSQDDE 853
S + + K + + +E
Sbjct: 141 SKVADSATEVQHKPTEALKSEE 162
>ref|XP_001788910.1| PREDICTED: centrosomal protein 170kDa isoform 1 [Bos taurus].
Length = 1585
Score = 58.5 bits (140), Expect = 9e-09
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Frame = +2
Query: 443 CDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYCR 622
C++ L+ SV + HAV+ + DA +D H + DLGS +GTF+N RIP +TY
Sbjct: 30 CELMLQSRSVDKQHAVINY-----DASTDEH----LVKDLGSLNGTFVNDVRIPEQTYIT 80
Query: 623 VHVGHVLRFGGSTRLFL-----LQGPEEDREAESELTVTQLKELRKQQQMMLEKKMLGED 787
+ + LRFG T LF ++ PEE + E QL + + ++ D
Sbjct: 81 LKLEDKLRFGYDTNLFTVVRGEMRVPEEALKHEKFTIQLQLSQKSSESELSKSACAKSID 140
Query: 788 SDEEEEMDTAERKRNTSSQDDE 853
S + + K + + +E
Sbjct: 141 SKVADSATEVQHKPTEALKSEE 162
>ref|XP_600317.5| PREDICTED: Smad nuclear interacting protein-like [Bos taurus].
Length = 1567
Score = 53.1 bits (126), Expect = 4e-07
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Frame = +2
Query: 443 CDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYCR 622
C++ L+ SV + HAV+ + D + D H ++ DLGS +GTF+N RIP + Y
Sbjct: 30 CELMLQSRSVDKQHAVINY-----DQDRDEH----WVKDLGSLNGTFVNDVRIPDQRYVT 80
Query: 623 VHVGHVLRFGGSTRLFLLQG-----PEEDREAE---SELTVTQLKELRKQQQMMLEKKML 778
+ + V+RFG +++L+ PEE E S+L V+ K+ + + E+
Sbjct: 81 LKLNDVIRFGYDPNMYVLERVQHRVPEEALRHEKYTSQLQVSVKTPAPKRAEAVPEQAPY 140
Query: 779 GEDSDEEEE 805
E S E
Sbjct: 141 CEASTPRPE 149
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,196,790
Number of extensions: 1104177
Number of successful extensions: 12426
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 10920
Number of HSP's successfully gapped: 12
Length of query: 350
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,273,310
Effective search space: 3525507570
Effective search space used: 3525507570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003456
(1052 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532916.2| PREDICTED: similar to solute carrier family 4 (... 547 e-156
Alignment gi|XP_548678.2| PREDICTED: similar to solute carrier family 4 (... 490 e-138
Alignment gi|XP_851174.1| PREDICTED: similar to solute carrier family 4 (... 488 e-138
Alignment gi|XP_850951.1| PREDICTED: similar to solute carrier family 4 (... 488 e-138
Alignment gi|XP_544466.2| PREDICTED: similar to protein phosphatase 1 reg... 66 6e-11
Alignment gi|XP_532557.2| PREDICTED: similar to Smad nuclear interacting ... 65 1e-10
Alignment gi|XP_863214.1| PREDICTED: similar to KARP-1-binding protein is... 58 2e-08
Alignment gi|XP_537218.2| PREDICTED: similar to KARP-1-binding protein is... 58 2e-08
Alignment gi|XP_863169.1| PREDICTED: similar to KARP-1-binding protein is... 58 2e-08
Alignment gi|XP_851112.1| PREDICTED: similar to KARP-1-binding protein is... 58 2e-08
>ref|XP_532916.2| PREDICTED: similar to solute carrier family 4 (anion exchanger),
member 1, adaptor protein [Canis familiaris].
Length = 736
Score = 547 bits (1409), Expect = e-156
Identities = 269/325 (82%), Positives = 281/325 (86%)
Frame = +2
Query: 17 MADSTSQSDPLASQELNGDFKKPALPVAPSERSKVTATSTSNPEEVKKERPTALPDSDSA 196
MAD S S+ LASQE + DFKKP LPV P R K ATS +NPEEVKKERPTALP+ D
Sbjct: 1 MADGPSPSESLASQERSDDFKKPTLPVPPVVRGKAPATSPANPEEVKKERPTALPEPDPG 60
Query: 197 EPDALPAQPDSGETRGPAKEQPRPPTAAPSPGCPARAPPYREPPWGGPATAPYGLEALKG 376
EPD P QPDSG+TR P EQPRPP+AAPS G PARAPPYREPPWGGPA+APY LE LKG
Sbjct: 61 EPDVPPVQPDSGDTRSPPTEQPRPPSAAPSAGGPARAPPYREPPWGGPASAPYSLETLKG 120
Query: 377 GTILGSRSLKGMSCCLFGRLPSCDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLY 556
GTILG+RSLKG SCCLFGRL SCDVCLEHPSVSRYHAVLQHR + + E DG GPGFYLY
Sbjct: 121 GTILGTRSLKGTSCCLFGRLSSCDVCLEHPSVSRYHAVLQHRAAGLEGECDGQGPGFYLY 180
Query: 557 DLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTRLFLLQGPEEDREAESELTVTQLKE 736
DLGSTHGTFLNKTRIPPRTY RVHVGHVLRFGGSTRLFLLQGPEEDREAESELTVTQLKE
Sbjct: 181 DLGSTHGTFLNKTRIPPRTYRRVHVGHVLRFGGSTRLFLLQGPEEDREAESELTVTQLKE 240
Query: 737 LRKQQQMMLEKKMLGEDSDEEEEMDTAERKRNTSSQDDEMGCTWGMGEDAVKDEAEENPI 916
LRKQQQMMLEKKMLGEDSD EEE+DT ERKRNTSSQDDEMGCTWGMGEDAV+DEAEENPI
Sbjct: 241 LRKQQQMMLEKKMLGEDSD-EEEVDTTERKRNTSSQDDEMGCTWGMGEDAVEDEAEENPI 299
Query: 917 VLEFQQEREAFLYKGSKKGPQGFFD 991
VLEFQQEREAF K KK QGFFD
Sbjct: 300 VLEFQQEREAFYIKDPKKALQGFFD 324
Score = 58.5 bits (140), Expect = 1e-08
Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +3
Query: 903 KRTPLF*SFSRKGRPFYIKDPKKALKVFLTRX-RRIRYEFDETGHSTWLCR 1052
+ P+ F ++ FYIKDPKKAL+ F R + YEFDE GHSTWLCR
Sbjct: 295 EENPIVLEFQQEREAFYIKDPKKALQGFFDREGEELEYEFDEQGHSTWLCR 345
>ref|XP_548678.2| PREDICTED: similar to solute carrier family 4 (anion exchanger),
member 1, adaptor protein [Canis familiaris].
Length = 533
Score = 490 bits (1261), Expect = e-138
Identities = 239/288 (82%), Positives = 251/288 (87%)
Frame = +2
Query: 17 MADSTSQSDPLASQELNGDFKKPALPVAPSERSKVTATSTSNPEEVKKERPTALPDSDSA 196
MADS S S+ LASQE + DFKKP LPV P R K ATS +NPEEVKKERPTALP+ D
Sbjct: 1 MADSPSPSESLASQERSDDFKKPTLPVPPVVRGKAPATSPANPEEVKKERPTALPEPDPG 60
Query: 197 EPDALPAQPDSGETRGPAKEQPRPPTAAPSPGCPARAPPYREPPWGGPATAPYGLEALKG 376
EPD P QPDSG+TR P EQPRPP+AAPS G PARAPPYREPPWGGPA+APY LE LKG
Sbjct: 61 EPDVPPVQPDSGDTRSPPTEQPRPPSAAPSAGGPARAPPYREPPWGGPASAPYSLETLKG 120
Query: 377 GTILGSRSLKGMSCCLFGRLPSCDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLY 556
GTILG+RSLKG SCCLFGRL SCDVCLEHPSVSRYHAVLQHR + + E DG GPGFYLY
Sbjct: 121 GTILGTRSLKGTSCCLFGRLSSCDVCLEHPSVSRYHAVLQHRAAGLEGECDGQGPGFYLY 180
Query: 557 DLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTRLFLLQGPEEDREAESELTVTQLKE 736
DLGSTHGTFLNKTRIPPRTY RVHVGHVLRFGGSTRLFLLQGPEEDREAESELTVTQLKE
Sbjct: 181 DLGSTHGTFLNKTRIPPRTYHRVHVGHVLRFGGSTRLFLLQGPEEDREAESELTVTQLKE 240
Query: 737 LRKQQQMMLEKKMLGEDSDEEEEMDTAERKRNTSSQDDEMGCTWGMGE 880
LRKQQQMMLEKKMLGEDSD EEE+DT ERKRNTSSQDDEMGCTWGMG+
Sbjct: 241 LRKQQQMMLEKKMLGEDSD-EEEVDTTERKRNTSSQDDEMGCTWGMGK 287
>ref|XP_851174.1| PREDICTED: similar to solute carrier family 4 (anion exchanger),
member 1, adaptor protein [Canis familiaris].
Length = 306
Score = 488 bits (1256), Expect = e-138
Identities = 238/288 (82%), Positives = 250/288 (86%)
Frame = +2
Query: 17 MADSTSQSDPLASQELNGDFKKPALPVAPSERSKVTATSTSNPEEVKKERPTALPDSDSA 196
MADS S+ LASQE + DFKKP LPV P R K ATS +NPEEVKKERPTALP+ D
Sbjct: 1 MADSPPPSESLASQERSDDFKKPTLPVPPVVRGKAPATSPANPEEVKKERPTALPEPDPG 60
Query: 197 EPDALPAQPDSGETRGPAKEQPRPPTAAPSPGCPARAPPYREPPWGGPATAPYGLEALKG 376
EPD P QPDSG+TR P EQPRPP+AAPS G PARAPPYREPPWGGPA+APY LE LKG
Sbjct: 61 EPDVPPVQPDSGDTRSPPTEQPRPPSAAPSAGGPARAPPYREPPWGGPASAPYSLETLKG 120
Query: 377 GTILGSRSLKGMSCCLFGRLPSCDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLY 556
GTILG+RSLKG SCCLFGRL SCDVCLEHPSVSRYHAVLQHR + + E DG GPGFYLY
Sbjct: 121 GTILGTRSLKGTSCCLFGRLSSCDVCLEHPSVSRYHAVLQHRAAGLEGECDGQGPGFYLY 180
Query: 557 DLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTRLFLLQGPEEDREAESELTVTQLKE 736
DLGSTHGTFLNKTRIPPRTY RVHVGHVLRFGGSTRLFLLQGPEEDREAESELTVTQLKE
Sbjct: 181 DLGSTHGTFLNKTRIPPRTYHRVHVGHVLRFGGSTRLFLLQGPEEDREAESELTVTQLKE 240
Query: 737 LRKQQQMMLEKKMLGEDSDEEEEMDTAERKRNTSSQDDEMGCTWGMGE 880
LRKQQQMMLEKKMLGEDSD EEE+DT ERKRNTSSQDDEMGCTWGMG+
Sbjct: 241 LRKQQQMMLEKKMLGEDSD-EEEVDTTERKRNTSSQDDEMGCTWGMGK 287
>ref|XP_850951.1| PREDICTED: similar to solute carrier family 4 (anion exchanger),
member 1, adaptor protein [Canis familiaris].
Length = 299
Score = 488 bits (1256), Expect = e-138
Identities = 238/289 (82%), Positives = 250/289 (86%)
Frame = +2
Query: 17 MADSTSQSDPLASQELNGDFKKPALPVAPSERSKVTATSTSNPEEVKKERPTALPDSDSA 196
MAD S S+ LASQE + DFKKP LPV P R K ATS +NPEEVKKERPTALP+ D
Sbjct: 1 MADGPSPSESLASQERSDDFKKPTLPVPPVVRGKAPATSPANPEEVKKERPTALPEPDPG 60
Query: 197 EPDALPAQPDSGETRGPAKEQPRPPTAAPSPGCPARAPPYREPPWGGPATAPYGLEALKG 376
EPD P QPDSG+TR P EQPRPP+AAPS G PARAPPYREPPWGGPA+APY LE LKG
Sbjct: 61 EPDVPPVQPDSGDTRSPPTEQPRPPSAAPSAGGPARAPPYREPPWGGPASAPYSLETLKG 120
Query: 377 GTILGSRSLKGMSCCLFGRLPSCDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLY 556
GTILG+RSLKG SCCLFGRL SCDVCLEHPSVSRYHAVLQHR + + E DG GPGFYLY
Sbjct: 121 GTILGTRSLKGTSCCLFGRLSSCDVCLEHPSVSRYHAVLQHRAAGLEGECDGQGPGFYLY 180
Query: 557 DLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTRLFLLQGPEEDREAESELTVTQLKE 736
DLGSTHGTFLNKTRIPPRTY RVHVGHVLRFGGSTRLFLLQGPEEDREAESELTVTQLKE
Sbjct: 181 DLGSTHGTFLNKTRIPPRTYRRVHVGHVLRFGGSTRLFLLQGPEEDREAESELTVTQLKE 240
Query: 737 LRKQQQMMLEKKMLGEDSDEEEEMDTAERKRNTSSQDDEMGCTWGMGED 883
LRKQQQMMLEKKMLGEDSD EEE+DT ERKRNTSSQDDEMGCTW MG+D
Sbjct: 241 LRKQQQMMLEKKMLGEDSD-EEEVDTTERKRNTSSQDDEMGCTWRMGDD 288
>ref|XP_544466.2| PREDICTED: similar to protein phosphatase 1 regulatory inhibitor
subunit 8 isoform alpha isoform 1 [Canis familiaris].
Length = 351
Score = 65.9 bits (159), Expect = 6e-11
Identities = 53/180 (29%), Positives = 75/180 (41%), Gaps = 6/180 (3%)
Frame = +2
Query: 308 PPYREPPWGGPATAPYGLEALKGGTILGSRSLKGMSCCLFGRLPS-CDVCLEHPSVSRYH 484
P + P W G L+ +KG ++ + LFGR P CD ++H S SR H
Sbjct: 12 PLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVH 71
Query: 485 AVLQHRVSSPDAESDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTR 664
A L + H +L DL STHGTFL R+ P ++ + + FG STR
Sbjct: 72 AALVYHK---------HLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTR 122
Query: 665 LFLLQGPEEDREAESELTVTQLKELRKQQQMMLEKKMLGEDSDEEE-----EMDTAERKR 829
+ L RE L + + + K +LG +E E E +TA KR
Sbjct: 123 AYTL------REKPQTLPSAVKGDEKMGGEDDELKGLLGLPEEETELDNLTEFNTAHNKR 176
>ref|XP_532557.2| PREDICTED: similar to Smad nuclear interacting protein [Canis
familiaris].
Length = 500
Score = 64.7 bits (156), Expect = 1e-10
Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
Frame = +2
Query: 314 YREPPWGGPATAPYGLEALKGGTILGSRSLKGMSCCLFGRLPS-CDVCLEHPSVSRYHAV 490
Y EPP + L K +L + S L GR D+ ++HPS S+ HAV
Sbjct: 350 YSEPPEARIPKKRWRLYPFKNDEVLPVMYIHRQSAYLLGRHRRIADIPIDHPSCSKQHAV 409
Query: 491 LQHR-VSSPDAESD-GHGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTR 664
Q+R V A+ G Y+ DLGS +GTFLN RI P+ Y + VL+FG S+R
Sbjct: 410 FQYRLVEYTRADGTVGRRVRPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVLKFGFSSR 469
Query: 665 LFLL-----------QGPEEDREAESELT 718
++L + +ED E E E++
Sbjct: 470 EYVLLHESSDTSEVDRKEDEDDEEEEEVS 498
>ref|XP_863214.1| PREDICTED: similar to KARP-1-binding protein isoform 4 [Canis
familiaris].
Length = 1486
Score = 57.8 bits (138), Expect = 2e-08
Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 25/177 (14%)
Frame = +2
Query: 443 CDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYCR 622
C++ L+ SV + HAV+ + DA D H + DLGS +GTF+N RIP +TY
Sbjct: 30 CELMLQSRSVDKQHAVINY-----DASMDEH----LVKDLGSLNGTFVNDVRIPEQTYIT 80
Query: 623 VHVGHVLRFGGSTRLFL-----LQGPEEDREAESELTVTQLKELRKQQQMMLEKKMLGED 787
+ + LRFG T LF ++ PEE + E QL+ +K + L K +
Sbjct: 81 LKLEDKLRFGYDTNLFTVVRGEMRVPEE--ALKHEKFTIQLQLSQKSSESELSKSACAKS 138
Query: 788 SD--------------------EEEEMDTAERKRNTSSQDDEMGCTWGMGEDAVKDE 898
D EE+ MD + R T +W G+D V+D+
Sbjct: 139 IDSKVADTSTEVQHKATEVLKSEEKAMDISAMPRGTPLYGQP---SW-WGDDEVEDQ 191
>ref|XP_537218.2| PREDICTED: similar to KARP-1-binding protein isoform 1 [Canis
familiaris].
Length = 1656
Score = 57.8 bits (138), Expect = 2e-08
Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 25/177 (14%)
Frame = +2
Query: 443 CDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYCR 622
C++ L+ SV + HAV+ + DA D H + DLGS +GTF+N RIP +TY
Sbjct: 30 CELMLQSRSVDKQHAVINY-----DASMDEH----LVKDLGSLNGTFVNDVRIPEQTYIT 80
Query: 623 VHVGHVLRFGGSTRLFL-----LQGPEEDREAESELTVTQLKELRKQQQMMLEKKMLGED 787
+ + LRFG T LF ++ PEE + E QL+ +K + L K +
Sbjct: 81 LKLEDKLRFGYDTNLFTVVRGEMRVPEE--ALKHEKFTIQLQLSQKSSESELSKSACAKS 138
Query: 788 SD--------------------EEEEMDTAERKRNTSSQDDEMGCTWGMGEDAVKDE 898
D EE+ MD + R T +W G+D V+D+
Sbjct: 139 IDSKVADTSTEVQHKATEVLKSEEKAMDISAMPRGTPLYGQP---SW-WGDDEVEDQ 191
>ref|XP_863169.1| PREDICTED: similar to KARP-1-binding protein isoform 3 [Canis
familiaris].
Length = 1460
Score = 57.8 bits (138), Expect = 2e-08
Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 25/177 (14%)
Frame = +2
Query: 443 CDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYCR 622
C++ L+ SV + HAV+ + DA D H + DLGS +GTF+N RIP +TY
Sbjct: 30 CELMLQSRSVDKQHAVINY-----DASMDEH----LVKDLGSLNGTFVNDVRIPEQTYIT 80
Query: 623 VHVGHVLRFGGSTRLFL-----LQGPEEDREAESELTVTQLKELRKQQQMMLEKKMLGED 787
+ + LRFG T LF ++ PEE + E QL+ +K + L K +
Sbjct: 81 LKLEDKLRFGYDTNLFTVVRGEMRVPEE--ALKHEKFTIQLQLSQKSSESELSKSACAKS 138
Query: 788 SD--------------------EEEEMDTAERKRNTSSQDDEMGCTWGMGEDAVKDE 898
D EE+ MD + R T +W G+D V+D+
Sbjct: 139 IDSKVADTSTEVQHKATEVLKSEEKAMDISAMPRGTPLYGQP---SW-WGDDEVEDQ 191
>ref|XP_851112.1| PREDICTED: similar to KARP-1-binding protein isoform 2 [Canis
familiaris].
Length = 1584
Score = 57.8 bits (138), Expect = 2e-08
Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 25/177 (14%)
Frame = +2
Query: 443 CDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYCR 622
C++ L+ SV + HAV+ + DA D H + DLGS +GTF+N RIP +TY
Sbjct: 30 CELMLQSRSVDKQHAVINY-----DASMDEH----LVKDLGSLNGTFVNDVRIPEQTYIT 80
Query: 623 VHVGHVLRFGGSTRLFL-----LQGPEEDREAESELTVTQLKELRKQQQMMLEKKMLGED 787
+ + LRFG T LF ++ PEE + E QL+ +K + L K +
Sbjct: 81 LKLEDKLRFGYDTNLFTVVRGEMRVPEE--ALKHEKFTIQLQLSQKSSESELSKSACAKS 138
Query: 788 SD--------------------EEEEMDTAERKRNTSSQDDEMGCTWGMGEDAVKDE 898
D EE+ MD + R T +W G+D V+D+
Sbjct: 139 IDSKVADTSTEVQHKATEVLKSEEKAMDISAMPRGTPLYGQP---SW-WGDDEVEDQ 191
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,932,228
Number of extensions: 1144915
Number of successful extensions: 12864
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 11504
Number of HSP's successfully gapped: 13
Length of query: 350
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 246
Effective length of database: 15,407,560
Effective search space: 3790259760
Effective search space used: 3790259760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003456
(1052 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060628.2| kanadaptin [Homo sapiens]. 545 e-155
Alignment gi|NP_054829.2| nuclear inhibitor of protein phosphatase 1 isof... 66 6e-11
Alignment gi|NP_078976.2| smad nuclear-interacting protein 1 [Homo sapien... 65 8e-11
Alignment gi|NP_001035864.1| centrosomal protein of 170 kDa isoform gamma... 61 2e-09
Alignment gi|NP_001035863.1| centrosomal protein of 170 kDa isoform beta ... 61 2e-09
Alignment gi|NP_055627.2| centrosomal protein of 170 kDa isoform alpha [H... 61 2e-09
Alignment gi|NP_001106197.1| hypothetical protein LOC283638 isoform 1 [Ho... 54 3e-07
>ref|NP_060628.2| kanadaptin [Homo sapiens].
Length = 796
Score = 545 bits (1404), Expect = e-155
Identities = 264/327 (80%), Positives = 286/327 (87%)
Frame = +2
Query: 11 MRMADSTSQSDPLASQELNGDFKKPALPVAPSERSKVTATSTSNPEEVKKERPTALPDSD 190
+RMAD SQS+ LASQ+L+GDFKKPALPV+P+ RSK A+S+SNPEEV+KE PTAL DS+
Sbjct: 53 LRMADILSQSETLASQDLSGDFKKPALPVSPAARSKAPASSSSNPEEVQKEGPTALQDSN 112
Query: 191 SAEPDALPAQPDSGETRGPAKEQPRPPTAAPSPGCPARAPPYREPPWGGPATAPYGLEAL 370
S EPD P QPD G+ R +EQ RPPTA SPG PARAPPY+EPPWGGPATAPY LE L
Sbjct: 113 SGEPDIPPPQPDCGDFRSLQEEQSRPPTAVSSPGGPARAPPYQEPPWGGPATAPYSLETL 172
Query: 371 KGGTILGSRSLKGMSCCLFGRLPSCDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFY 550
KGGTILG+RSLKG S CLFGRL CDVCLEHPSVSRYHAVLQHR S PD E D +GPGFY
Sbjct: 173 KGGTILGTRSLKGTSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFY 232
Query: 551 LYDLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTRLFLLQGPEEDREAESELTVTQL 730
LYDLGSTHGTFLNKTRIPPRTYCRVHVGHV+RFGGSTRLF+LQGPEEDREAESELTVTQL
Sbjct: 233 LYDLGSTHGTFLNKTRIPPRTYCRVHVGHVVRFGGSTRLFILQGPEEDREAESELTVTQL 292
Query: 731 KELRKQQQMMLEKKMLGEDSDEEEEMDTAERKRNTSSQDDEMGCTWGMGEDAVKDEAEEN 910
KELRKQQQ++LEKKMLGEDSDEEEEMDT+ERK N SQDDEMGCTWGMGEDAV+D+AEEN
Sbjct: 293 KELRKQQQILLEKKMLGEDSDEEEEMDTSERKINAGSQDDEMGCTWGMGEDAVEDDAEEN 352
Query: 911 PIVLEFQQEREAFLYKGSKKGPQGFFD 991
PIVLEFQQEREAF K KK QGFFD
Sbjct: 353 PIVLEFQQEREAFYIKDPKKALQGFFD 379
Score = 58.5 bits (140), Expect = 1e-08
Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +3
Query: 903 KRTPLF*SFSRKGRPFYIKDPKKALKVFLTRX-RRIRYEFDETGHSTWLCR 1052
+ P+ F ++ FYIKDPKKAL+ F R + YEFDE GHSTWLCR
Sbjct: 350 EENPIVLEFQQEREAFYIKDPKKALQGFFDREGEELEYEFDEQGHSTWLCR 400
>ref|NP_054829.2| nuclear inhibitor of protein phosphatase 1 isoform alpha [Homo
sapiens].
Length = 351
Score = 65.9 bits (159), Expect = 6e-11
Identities = 53/180 (29%), Positives = 75/180 (41%), Gaps = 6/180 (3%)
Frame = +2
Query: 308 PPYREPPWGGPATAPYGLEALKGGTILGSRSLKGMSCCLFGRLPS-CDVCLEHPSVSRYH 484
P + P W G L+ +KG ++ + LFGR P CD ++H S SR H
Sbjct: 12 PLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVH 71
Query: 485 AVLQHRVSSPDAESDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTR 664
A L + H +L DL STHGTFL R+ P ++ + + FG STR
Sbjct: 72 AALVYHK---------HLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTR 122
Query: 665 LFLLQGPEEDREAESELTVTQLKELRKQQQMMLEKKMLGEDSDEEE-----EMDTAERKR 829
+ L RE L + + + K +LG +E E E +TA KR
Sbjct: 123 AYTL------REKPQTLPSAVKGDEKMGGEDDELKGLLGLPEEETELDNLTEFNTAHNKR 176
>ref|NP_078976.2| smad nuclear-interacting protein 1 [Homo sapiens].
Length = 396
Score = 65.5 bits (158), Expect = 8e-11
Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
Frame = +2
Query: 314 YREPPWGGPATAPYGLEALKGGTILGSRSLKGMSCCLFGRLPS-CDVCLEHPSVSRYHAV 490
Y EPP + L K +L + S L GR D+ ++HPS S+ HAV
Sbjct: 246 YSEPPEARIPKKRWRLYPFKNDEVLPVMYIHRQSAYLLGRHRRIADIPIDHPSCSKQHAV 305
Query: 491 LQHR-VSSPDAESD-GHGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTR 664
Q+R V A+ G Y+ DLGS +GTFLN RI P+ Y + VL+FG S+R
Sbjct: 306 FQYRLVEYTRADGTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVLKFGFSSR 365
Query: 665 LFLL-----------QGPEEDREAESELT 718
++L + +ED E E E++
Sbjct: 366 EYVLLHESSDTSEIDRKDDEDEEEEEEVS 394
>ref|NP_001035864.1| centrosomal protein of 170 kDa isoform gamma [Homo sapiens].
Length = 1460
Score = 60.8 bits (146), Expect = 2e-09
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Frame = +2
Query: 443 CDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYCR 622
C++ L+ SV + HAV+ + DA +D H + DLGS +GTF+N RIP +TY
Sbjct: 30 CELMLQSRSVDKQHAVINY-----DASTDEH----LVKDLGSLNGTFVNDVRIPEQTYIT 80
Query: 623 VHVGHVLRFGGSTRLF-LLQG----PEEDREAESELTVTQLKELRKQQQMMLEKKMLGED 787
+ + LRFG T LF ++QG PEE + E QL + + ++ D
Sbjct: 81 LKLEDKLRFGYDTNLFTVVQGEMRVPEEALKHEKFTIQLQLSQKSSESELSKSASAKSID 140
Query: 788 SDEEEEMDTAERKRNTSSQDDE 853
S + + K + + +E
Sbjct: 141 SKVADAATEVQHKTTEALKSEE 162
>ref|NP_001035863.1| centrosomal protein of 170 kDa isoform beta [Homo sapiens].
Length = 1486
Score = 60.8 bits (146), Expect = 2e-09
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Frame = +2
Query: 443 CDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYCR 622
C++ L+ SV + HAV+ + DA +D H + DLGS +GTF+N RIP +TY
Sbjct: 30 CELMLQSRSVDKQHAVINY-----DASTDEH----LVKDLGSLNGTFVNDVRIPEQTYIT 80
Query: 623 VHVGHVLRFGGSTRLF-LLQG----PEEDREAESELTVTQLKELRKQQQMMLEKKMLGED 787
+ + LRFG T LF ++QG PEE + E QL + + ++ D
Sbjct: 81 LKLEDKLRFGYDTNLFTVVQGEMRVPEEALKHEKFTIQLQLSQKSSESELSKSASAKSID 140
Query: 788 SDEEEEMDTAERKRNTSSQDDE 853
S + + K + + +E
Sbjct: 141 SKVADAATEVQHKTTEALKSEE 162
>ref|NP_055627.2| centrosomal protein of 170 kDa isoform alpha [Homo sapiens].
Length = 1584
Score = 60.8 bits (146), Expect = 2e-09
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Frame = +2
Query: 443 CDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYCR 622
C++ L+ SV + HAV+ + DA +D H + DLGS +GTF+N RIP +TY
Sbjct: 30 CELMLQSRSVDKQHAVINY-----DASTDEH----LVKDLGSLNGTFVNDVRIPEQTYIT 80
Query: 623 VHVGHVLRFGGSTRLF-LLQG----PEEDREAESELTVTQLKELRKQQQMMLEKKMLGED 787
+ + LRFG T LF ++QG PEE + E QL + + ++ D
Sbjct: 81 LKLEDKLRFGYDTNLFTVVQGEMRVPEEALKHEKFTIQLQLSQKSSESELSKSASAKSID 140
Query: 788 SDEEEEMDTAERKRNTSSQDDE 853
S + + K + + +E
Sbjct: 141 SKVADAATEVQHKTTEALKSEE 162
>ref|NP_001106197.1| hypothetical protein LOC283638 isoform 1 [Homo sapiens].
Length = 1554
Score = 53.5 bits (127), Expect = 3e-07
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Frame = +2
Query: 443 CDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYCR 622
C++ L+ SV + HAV+ + D + D H ++ DLGS +GTF+N RIP + Y
Sbjct: 30 CELMLQSRSVDKQHAVINY-----DQDRDEH----WVKDLGSLNGTFVNDMRIPDQKYVT 80
Query: 623 VHVGHVLRFGGSTRLFLLQG-----PEEDREAE---SELTVTQLKELRKQQQMMLEKKML 778
+ + V+RFG + +++L+ PEE + E S+L V+ K+ + + E
Sbjct: 81 LKLNDVIRFGYDSNMYVLERVQHRVPEEALKHEKYTSQLQVSVKGLAPKRSEALPEHTPY 140
Query: 779 GEDSDEEEE 805
E S+ E
Sbjct: 141 CEASNPRPE 149
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,982,970
Number of extensions: 1108064
Number of successful extensions: 12351
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 10975
Number of HSP's successfully gapped: 8
Length of query: 350
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,901,872
Effective search space: 3680762384
Effective search space used: 3680762384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003456
(1052 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033232.2| solute carrier family 4 (anion exchanger), memb... 479 e-135
Alignment gi|NP_666266.1| nuclear inhibitor of protein phosphatase 1 [Mus... 66 5e-11
Alignment gi|NP_780455.2| smad nuclear-interacting protein 1 [Mus musculu... 65 7e-11
Alignment gi|NP_001093107.2| centrosomal protein of 170 kDa [Mus musculus]. 61 1e-09
Alignment gi|NP_001019773.2| hypothetical protein LOC217882 [Mus musculus]. 54 3e-07
>ref|NP_033232.2| solute carrier family 4 (anion exchanger), member 1, adaptor
protein [Mus musculus].
Length = 715
Score = 479 bits (1234), Expect = e-135
Identities = 235/325 (72%), Positives = 259/325 (79%)
Frame = +2
Query: 17 MADSTSQSDPLASQELNGDFKKPALPVAPSERSKVTATSTSNPEEVKKERPTALPDSDSA 196
MAD T Q D A QE++ +FKKP LPV + R K A+S S E+VKKE A DS
Sbjct: 1 MADPTPQLDAPAPQEVSSEFKKPVLPVPSAVRGKAPASSPSVSEDVKKECLAAQLDSGCE 60
Query: 197 EPDALPAQPDSGETRGPAKEQPRPPTAAPSPGCPARAPPYREPPWGGPATAPYGLEALKG 376
EP+ P QPDS ET GP EQ R P AP+ G P RAPPYREP WG PATAPY LE LKG
Sbjct: 61 EPEVPPPQPDSQETGGPPVEQLRSPRVAPASGGPTRAPPYREPSWGSPATAPYSLETLKG 120
Query: 377 GTILGSRSLKGMSCCLFGRLPSCDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLY 556
GTILG+R+LK SCC FGRL SCD+CLEHPSVSRYHAVLQHR + P +S+GH GFYLY
Sbjct: 121 GTILGTRTLKDTSCCFFGRLASCDICLEHPSVSRYHAVLQHRGADPSGDSEGHEQGFYLY 180
Query: 557 DLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTRLFLLQGPEEDREAESELTVTQLKE 736
DLGSTHGTFLNKTRIPPRTYCRVHVGHV+RFGGSTRLF+LQGPEEDREAESELTVTQLKE
Sbjct: 181 DLGSTHGTFLNKTRIPPRTYCRVHVGHVMRFGGSTRLFILQGPEEDREAESELTVTQLKE 240
Query: 737 LRKQQQMMLEKKMLGEDSDEEEEMDTAERKRNTSSQDDEMGCTWGMGEDAVKDEAEENPI 916
LRKQQQ++LEKKMLGEDSDEEEE +T E K + S QDDE+GCTWGMGEDAV+DEAEENPI
Sbjct: 241 LRKQQQILLEKKMLGEDSDEEEEANTTEGKSSRSGQDDELGCTWGMGEDAVEDEAEENPI 300
Query: 917 VLEFQQEREAFLYKGSKKGPQGFFD 991
L+FQQ+REAF K KK QGFFD
Sbjct: 301 ALDFQQDREAFYIKDPKKALQGFFD 325
Score = 57.4 bits (137), Expect = 2e-08
Identities = 27/51 (52%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +3
Query: 903 KRTPLF*SFSRKGRPFYIKDPKKALKVFLTRX-RRIRYEFDETGHSTWLCR 1052
+ P+ F + FYIKDPKKAL+ F R + YEFDE GHSTWLCR
Sbjct: 296 EENPIALDFQQDREAFYIKDPKKALQGFFDREGEELEYEFDEQGHSTWLCR 346
>ref|NP_666266.1| nuclear inhibitor of protein phosphatase 1 [Mus musculus].
Length = 351
Score = 65.9 bits (159), Expect = 5e-11
Identities = 53/180 (29%), Positives = 75/180 (41%), Gaps = 6/180 (3%)
Frame = +2
Query: 308 PPYREPPWGGPATAPYGLEALKGGTILGSRSLKGMSCCLFGRLPS-CDVCLEHPSVSRYH 484
P + P W G L+ +KG ++ + LFGR P CD ++H S SR H
Sbjct: 12 PLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVH 71
Query: 485 AVLQHRVSSPDAESDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTR 664
A L + H +L DL STHGTFL R+ P ++ + + FG STR
Sbjct: 72 AALVYHK---------HLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTR 122
Query: 665 LFLLQGPEEDREAESELTVTQLKELRKQQQMMLEKKMLGEDSDEEE-----EMDTAERKR 829
+ L RE L + + + K +LG +E E E +TA KR
Sbjct: 123 AYTL------REKPQTLPSAVKGDEKMGGEDDELKGLLGLPEEETELDNLTEFNTAHNKR 176
>ref|NP_780455.2| smad nuclear-interacting protein 1 [Mus musculus].
Length = 383
Score = 65.5 bits (158), Expect = 7e-11
Identities = 57/168 (33%), Positives = 77/168 (45%), Gaps = 3/168 (1%)
Frame = +2
Query: 314 YREPPWGGPATAPYGLEALKGGTILGSRSLKGMSCCLFGRLPS-CDVCLEHPSVSRYHAV 490
Y EPP + L K +L + S L GR D+ ++HPS S+ HAV
Sbjct: 233 YSEPPEARIPKKRWRLYPFKNDEVLPVMYIHRQSAYLLGRHRRIADIPIDHPSCSKQHAV 292
Query: 491 LQHR-VSSPDAESD-GHGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTR 664
Q+R V A+ G Y+ DLGS +GTFLN RI P+ Y + VL+FG S+R
Sbjct: 293 FQYRLVEYTRADGTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVLKFGFSSR 352
Query: 665 LFLLQGPEEDREAESELTVTQLKELRKQQQMMLEKKMLGEDSDEEEEM 808
++L D SEL RK+ ++ DEEEEM
Sbjct: 353 EYVLLHESSD---TSELD-------RKE-----------DEDDEEEEM 379
>ref|NP_001093107.2| centrosomal protein of 170 kDa [Mus musculus].
Length = 1578
Score = 61.2 bits (147), Expect = 1e-09
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Frame = +2
Query: 443 CDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYCR 622
C++ L+ SV + HAV+ + DA D H + DLGS +GTF+N RIP +TY
Sbjct: 30 CELMLQSRSVDKQHAVINY-----DASMDEH----LVKDLGSLNGTFVNDVRIPEQTYIT 80
Query: 623 VHVGHVLRFGGSTRLFL-----LQGPEEDREAESELTVTQLKELRKQQQMMLEKKMLGED 787
+ + LRFG T LF ++ PEE + E QL + + ++ G D
Sbjct: 81 LKLEDKLRFGYDTNLFTVVRGEMRVPEEALKHEKFTIQLQLSQKSSESELPKSASAKGTD 140
Query: 788 SDEEEEMDTAERKRNTSSQDDE 853
S E + R +++
Sbjct: 141 SKVEAAAEVQPRATEALKSEEK 162
>ref|NP_001019773.2| hypothetical protein LOC217882 [Mus musculus].
Length = 1574
Score = 53.5 bits (127), Expect = 3e-07
Identities = 27/79 (34%), Positives = 47/79 (59%)
Frame = +2
Query: 443 CDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYCR 622
C++ L+ SV + HAV+ + D + D H ++ DLGS +GTF+N RIP + Y
Sbjct: 30 CELMLQSRSVDKQHAVINY-----DQDRDEH----WVKDLGSLNGTFVNDVRIPDQKYIT 80
Query: 623 VHVGHVLRFGGSTRLFLLQ 679
+ + V+RFG + +++L+
Sbjct: 81 LKLNDVIRFGYDSNMYVLE 99
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,812,613
Number of extensions: 913844
Number of successful extensions: 9798
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8340
Number of HSP's successfully gapped: 6
Length of query: 350
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 248
Effective length of database: 12,553,887
Effective search space: 3113363976
Effective search space used: 3113363976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003456
(1052 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230343.1| protein phosphatase 1, regulatory (inhibitor... 66 4e-11
Alignment gi|XP_003361962.1| PREDICTED: smad nuclear-interacting protein ... 65 8e-11
Alignment gi|XP_003125340.2| PREDICTED: kanadaptin, partial [Sus scrofa]. 64 2e-10
Alignment gi|XP_003128793.1| PREDICTED: protein KIAA0284-like [Sus scrofa]. 54 2e-07
>ref|NP_001230343.1| protein phosphatase 1, regulatory (inhibitor) subunit 8 [Sus
scrofa].
Length = 351
Score = 65.9 bits (159), Expect = 4e-11
Identities = 53/180 (29%), Positives = 75/180 (41%), Gaps = 6/180 (3%)
Frame = +2
Query: 308 PPYREPPWGGPATAPYGLEALKGGTILGSRSLKGMSCCLFGRLPS-CDVCLEHPSVSRYH 484
P + P W G L+ +KG ++ + LFGR P CD ++H S SR H
Sbjct: 12 PLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVH 71
Query: 485 AVLQHRVSSPDAESDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTR 664
A L + H +L DL STHGTFL R+ P ++ + + FG STR
Sbjct: 72 AALVYHK---------HLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTR 122
Query: 665 LFLLQGPEEDREAESELTVTQLKELRKQQQMMLEKKMLGEDSDEEE-----EMDTAERKR 829
+ L RE L + + + K +LG +E E E +TA KR
Sbjct: 123 AYTL------REKPQTLPSAVKGDEKMGGEDDELKGLLGLPEEETELDNLTEFNTAHNKR 176
>ref|XP_003361962.1| PREDICTED: smad nuclear-interacting protein 1-like [Sus scrofa].
Length = 326
Score = 64.7 bits (156), Expect = 8e-11
Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
Frame = +2
Query: 314 YREPPWGGPATAPYGLEALKGGTILGSRSLKGMSCCLFGRLPS-CDVCLEHPSVSRYHAV 490
Y EPP + L K +L + S L GR D+ ++HPS S+ HAV
Sbjct: 176 YSEPPEARIPKKRWRLYPFKNDEVLPVMYIHRQSAYLLGRHRRIADIPIDHPSCSKQHAV 235
Query: 491 LQHR-VSSPDAESD-GHGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVLRFGGSTR 664
Q+R V A+ G Y+ DLGS +GTFLN RI P+ Y + VL+FG S+R
Sbjct: 236 FQYRLVEYTRADGTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVLKFGFSSR 295
Query: 665 LFLL-----------QGPEEDREAESELT 718
++L + +ED E E E++
Sbjct: 296 EYVLLHESSDTSEVDRKEDEDDEEEEEVS 324
>ref|XP_003125340.2| PREDICTED: kanadaptin, partial [Sus scrofa].
Length = 452
Score = 63.5 bits (153), Expect = 2e-10
Identities = 31/38 (81%), Positives = 32/38 (84%)
Frame = +2
Query: 878 EDAVKDEAEENPIVLEFQQEREAFLYKGSKKGPQGFFD 991
EDAV+DEAEENPIVLEFQQEREAF K KK QGFFD
Sbjct: 1 EDAVEDEAEENPIVLEFQQEREAFYIKDPKKALQGFFD 38
Score = 58.5 bits (140), Expect = 6e-09
Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +3
Query: 903 KRTPLF*SFSRKGRPFYIKDPKKALKVFLTRX-RRIRYEFDETGHSTWLCR 1052
+ P+ F ++ FYIKDPKKAL+ F R + YEFDE GHSTWLCR
Sbjct: 9 EENPIVLEFQQEREAFYIKDPKKALQGFFDREGEELEYEFDEQGHSTWLCR 59
>ref|XP_003128793.1| PREDICTED: protein KIAA0284-like [Sus scrofa].
Length = 1542
Score = 53.5 bits (127), Expect = 2e-07
Identities = 27/79 (34%), Positives = 47/79 (59%)
Frame = +2
Query: 443 CDVCLEHPSVSRYHAVLQHRVSSPDAESDGHGPGFYLYDLGSTHGTFLNKTRIPPRTYCR 622
C++ L+ SV + HAV+ + D + D H ++ DLGS +GTF+N RIP + Y
Sbjct: 30 CELMLQSRSVDKQHAVINY-----DQDRDEH----WVKDLGSLNGTFVNDVRIPDQKYVT 80
Query: 623 VHVGHVLRFGGSTRLFLLQ 679
+ + V+RFG + +++L+
Sbjct: 81 LKLNDVIRFGYDSNMYVLE 99
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,681,417
Number of extensions: 713744
Number of successful extensions: 8207
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7049
Number of HSP's successfully gapped: 5
Length of query: 350
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 250
Effective length of database: 8,854,232
Effective search space: 2213558000
Effective search space used: 2213558000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003456
(1052 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 720 0.0
>Sscrofa_Chr03
|| Length = 144787322
Score = 720 bits (363), Expect = 0.0
Identities = 366/367 (99%)
Strand = Plus / Minus
Query: 314 taccgagagccgccatggggcggccccgctactgccccgtacggcctagaggctctgaaa 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118497253 taccgagagccgccatggggcggccccgctactgccccgtacggcctagaggctctgaaa 118497194
Query: 374 ggaggcaccatccttggcagccggagcttgaaaggcatgagttgctgccttttcgggagg 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118497193 ggaggcaccatccttggcagccggagcttgaaaggcatgagttgctgccttttcgggagg 118497134
Query: 434 ctccctagctgcgacgtgtgcctggagcacccttcggtgtctcgctaccacgccgtgttg 493
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118497133 ctccctagctgcgatgtgtgcctggagcacccttcggtgtctcgctaccacgccgtgttg 118497074
Query: 494 cagcacagggtgtccagccccgatgcagaatccgacggccacgggcccggcttctatctc 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118497073 cagcacagggtgtccagccccgatgcagaatccgacggccacgggcccggcttctatctc 118497014
Query: 554 tacgatttgggaagcacccacggcactttccttaacaaaacgcgcattccaccccgcacc 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118497013 tacgatttgggaagcacccacggcactttccttaacaaaacgcgcattccaccccgcacc 118496954
Query: 614 tattgtcgggtccacgtcgggcatgttcttcgctttggaggcagcacccggctctttctt 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118496953 tattgtcgggtccacgtcgggcatgttcttcgctttggaggcagcacccggctctttctt 118496894
Query: 674 cttcagg 680
|||||||
Sbjct: 118496893 cttcagg 118496887
Score = 507 bits (256), Expect = e-141
Identities = 256/256 (100%)
Strand = Plus / Minus
Query: 7 cccgatgaggatggctgatagtacttctcagtctgatcctctggcttcccaagaactcaa 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118497560 cccgatgaggatggctgatagtacttctcagtctgatcctctggcttcccaagaactcaa 118497501
Query: 67 tggcgacttcaagaagccagccctgccagtggccccatcggaacggagcaaggtcacggc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118497500 tggcgacttcaagaagccagccctgccagtggccccatcggaacggagcaaggtcacggc 118497441
Query: 127 aaccagtacttcaaaccccgaagaggtgaagaaggaaaggcccacggcgctgccggactc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118497440 aaccagtacttcaaaccccgaagaggtgaagaaggaaaggcccacggcgctgccggactc 118497381
Query: 187 cgattccgcggagcctgatgccctgccggcccagccggacagcggggagactaggggtcc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118497380 cgattccgcggagcctgatgccctgccggcccagccggacagcggggagactaggggtcc 118497321
Query: 247 agcgaaggagcagccg 262
||||||||||||||||
Sbjct: 118497320 agcgaaggagcagccg 118497305
Score = 391 bits (197), Expect = e-106
Identities = 200/201 (99%)
Strand = Plus / Minus
Query: 676 tcagggaccagaagaagaccgagaggcagaatccgagttgacagtaacgcagctgaagga 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118496665 tcagggaccagaagaagaccgagaggcagaatccgagttgacagtaacgcagctgaagga 118496606
Query: 736 attgcgtaagcagcagcaaatgatgttggagaagaagatgttgggagaagactcagacga 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118496605 attgcgtaagcagcagcaaatgatgttggagaagaagatgttgggagaagactcagacga 118496546
Query: 796 agaagaggaaatggataccgctgaaagaaagagaaatactagtagtcaagatgatgaaat 855
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 118496545 agaagaggaaatggataccgctgaaagaaagagaaatattagtagtcaagatgatgaaat 118496486
Query: 856 gggctgcacctggggaatggg 876
|||||||||||||||||||||
Sbjct: 118496485 gggctgcacctggggaatggg 118496465
Score = 180 bits (91), Expect = 1e-42
Identities = 101/103 (98%), Gaps = 1/103 (0%)
Strand = Plus / Minus
Query: 875 ggagaagatgctgtaaaggatgaggctgaagagaaccccattgttttagagtttcagcag 934
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118493394 ggagaagatgctgtagaggatgaggctgaagagaaccccattgttttagagtttcagcag 118493335
Query: 935 gaaagggaggcctttttatataaaggatccaaaaaaggccctc 977
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 118493334 gaaagggaggcc-ttttatataaaggatccaaaaaaggccctc 118493293
Score = 79.8 bits (40), Expect = 3e-12
Identities = 53/56 (94%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 998 gagaagaattaga-tatgaatttgatgaaacaggtcatagtacctggctctgcagg 1052
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 118492554 gagaagaattagaatatgaatttgatgaacaaggtcatagtacctggctctgcagg 118492499
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,195,962
Number of extensions: 173
Number of successful extensions: 173
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 5
Length of query: 1052
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1031
Effective length of database: 2,808,413,156
Effective search space: 2895473963836
Effective search space used: 2895473963836
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)