Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003461
(709 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777092.1| NADH dehydrogenase [ubiquinone] 1 beta subcompl... 381 e-106
Alignment gi|XP_002700215.1| PREDICTED: NADH dehydrogenase-like [Bos taur... 374 e-104
>ref|NP_777092.1| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8,
mitochondrial precursor [Bos taurus].
Length = 186
Score = 381 bits (978), Expect = e-106
Identities = 169/180 (93%), Positives = 174/180 (96%)
Frame = +3
Query: 51 GVLGVRWLQRAARKVVPLGARTASHITKDMFPGPYPKTPEERAAAAKKYNMRVEDYEPYP 230
GVLGVRWLQ+AAR VVPLGARTASHITKDM PGPYPKTPEERAAAAKKYNMRVEDYEPYP
Sbjct: 7 GVLGVRWLQKAARNVVPLGARTASHITKDMLPGPYPKTPEERAAAAKKYNMRVEDYEPYP 66
Query: 231 DDGMGYGDYPKLPDRSQQERDPWYDWDHPDLRLNWGEPIHWDLDMYIRNRVDTSPTPVSW 410
DDG GYGDYPKLPDRSQQERDPWYDWDHPDLRLNWGEP+HWDLDMYIRNRVDTSPTPV+W
Sbjct: 67 DDGTGYGDYPKLPDRSQQERDPWYDWDHPDLRLNWGEPMHWDLDMYIRNRVDTSPTPVNW 126
Query: 411 NTMCKHLFGFVAFMLFMFWVGEIYPSYQPVGPKQYPYNDLYLERGGDPTKEPEPVVHYEI 590
N MCKHLFGFVAFMLFMFWVGE YP+YQPVGPKQYPYN+LYLERGGDP KEPEPVVHYEI
Sbjct: 127 NLMCKHLFGFVAFMLFMFWVGETYPAYQPVGPKQYPYNNLYLERGGDPNKEPEPVVHYEI 186
>ref|XP_002700215.1| PREDICTED: NADH dehydrogenase-like [Bos taurus].
Length = 186
Score = 374 bits (960), Expect = e-104
Identities = 166/180 (92%), Positives = 173/180 (96%)
Frame = +3
Query: 51 GVLGVRWLQRAARKVVPLGARTASHITKDMFPGPYPKTPEERAAAAKKYNMRVEDYEPYP 230
GVLGVRWLQ+AA+ VVPLGARTASHITKDM PGPYPKTPEERAAAAKKYNMRVEDYEPYP
Sbjct: 7 GVLGVRWLQKAAQNVVPLGARTASHITKDMLPGPYPKTPEERAAAAKKYNMRVEDYEPYP 66
Query: 231 DDGMGYGDYPKLPDRSQQERDPWYDWDHPDLRLNWGEPIHWDLDMYIRNRVDTSPTPVSW 410
DDGMGYGDYPKLPDRSQQERDPWYDWDHPDL+LNWGE +HWDLDMYIRNRVD SPTPV+W
Sbjct: 67 DDGMGYGDYPKLPDRSQQERDPWYDWDHPDLQLNWGELMHWDLDMYIRNRVDMSPTPVNW 126
Query: 411 NTMCKHLFGFVAFMLFMFWVGEIYPSYQPVGPKQYPYNDLYLERGGDPTKEPEPVVHYEI 590
N MCKHLFGFVAFMLFMFWVGE YP+YQPVGPKQYPYN+LYLERGGDP KEPEPVVHYEI
Sbjct: 127 NLMCKHLFGFVAFMLFMFWVGETYPAYQPVGPKQYPYNNLYLERGGDPNKEPEPVVHYEI 186
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 28,505,573
Number of extensions: 838870
Number of successful extensions: 3025
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3023
Number of HSP's successfully gapped: 2
Length of query: 236
Length of database: 17,681,374
Length adjustment: 99
Effective length of query: 137
Effective length of database: 14,405,662
Effective search space: 1973575694
Effective search space used: 1973575694
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003461
(709 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534992.1| PREDICTED: similar to NADH dehydrogenase (ubiqu... 367 e-102
Alignment gi|XP_861704.1| PREDICTED: similar to NADH dehydrogenase (ubiqu... 322 3e-88
Alignment gi|XP_861674.1| PREDICTED: similar to NADH dehydrogenase (ubiqu... 322 3e-88
>ref|XP_534992.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta
subcomplex 8 isoform 1 [Canis familiaris].
Length = 186
Score = 367 bits (941), Expect = e-102
Identities = 166/179 (92%), Positives = 171/179 (95%)
Frame = +3
Query: 54 VLGVRWLQRAARKVVPLGARTASHITKDMFPGPYPKTPEERAAAAKKYNMRVEDYEPYPD 233
VLGVR LQRA R VVPLGARTASHITKDM PGPYPKTPEERAAAAKKYNMRVEDYEPYPD
Sbjct: 8 VLGVRRLQRATRTVVPLGARTASHITKDMLPGPYPKTPEERAAAAKKYNMRVEDYEPYPD 67
Query: 234 DGMGYGDYPKLPDRSQQERDPWYDWDHPDLRLNWGEPIHWDLDMYIRNRVDTSPTPVSWN 413
DGMGYGDYPKLPDRSQQERDPWY+WDH DLRLNWGEP+HWDLDMYIRNRVDTSPTPVSW+
Sbjct: 68 DGMGYGDYPKLPDRSQQERDPWYNWDHSDLRLNWGEPMHWDLDMYIRNRVDTSPTPVSWS 127
Query: 414 TMCKHLFGFVAFMLFMFWVGEIYPSYQPVGPKQYPYNDLYLERGGDPTKEPEPVVHYEI 590
MCKHLFGFVAFMLFMFWVGE Y +YQPVGPKQYPYN+LYLERGGDPTKEPEPVVHYEI
Sbjct: 128 LMCKHLFGFVAFMLFMFWVGENYRTYQPVGPKQYPYNNLYLERGGDPTKEPEPVVHYEI 186
>ref|XP_861704.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta
subcomplex 8 isoform 3 [Canis familiaris].
Length = 151
Score = 322 bits (824), Expect = 3e-88
Identities = 141/151 (93%), Positives = 146/151 (96%)
Frame = +3
Query: 138 MFPGPYPKTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQQERDPWYDWDHP 317
M PGPYPKTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQQERDPWY+WDH
Sbjct: 1 MLPGPYPKTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQQERDPWYNWDHS 60
Query: 318 DLRLNWGEPIHWDLDMYIRNRVDTSPTPVSWNTMCKHLFGFVAFMLFMFWVGEIYPSYQP 497
DLRLNWGEP+HWDLDMYIRNRVDTSPTPVSW+ MCKHLFGFVAFMLFMFWVGE Y +YQP
Sbjct: 61 DLRLNWGEPMHWDLDMYIRNRVDTSPTPVSWSLMCKHLFGFVAFMLFMFWVGENYRTYQP 120
Query: 498 VGPKQYPYNDLYLERGGDPTKEPEPVVHYEI 590
VGPKQYPYN+LYLERGGDPTKEPEPVVHYEI
Sbjct: 121 VGPKQYPYNNLYLERGGDPTKEPEPVVHYEI 151
>ref|XP_861674.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta
subcomplex 8 isoform 2 [Canis familiaris].
Length = 151
Score = 322 bits (824), Expect = 3e-88
Identities = 141/151 (93%), Positives = 146/151 (96%)
Frame = +3
Query: 138 MFPGPYPKTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQQERDPWYDWDHP 317
M PGPYPKTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQQERDPWY+WDH
Sbjct: 1 MLPGPYPKTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQQERDPWYNWDHS 60
Query: 318 DLRLNWGEPIHWDLDMYIRNRVDTSPTPVSWNTMCKHLFGFVAFMLFMFWVGEIYPSYQP 497
DLRLNWGEP+HWDLDMYIRNRVDTSPTPVSW+ MCKHLFGFVAFMLFMFWVGE Y +YQP
Sbjct: 61 DLRLNWGEPMHWDLDMYIRNRVDTSPTPVSWSLMCKHLFGFVAFMLFMFWVGENYRTYQP 120
Query: 498 VGPKQYPYNDLYLERGGDPTKEPEPVVHYEI 590
VGPKQYPYN+LYLERGGDPTKEPEPVVHYEI
Sbjct: 121 VGPKQYPYNNLYLERGGDPTKEPEPVVHYEI 151
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 29,688,204
Number of extensions: 856386
Number of successful extensions: 3201
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3196
Number of HSP's successfully gapped: 3
Length of query: 236
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 136
Effective length of database: 15,540,904
Effective search space: 2113562944
Effective search space used: 2113562944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003461
(709 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004995.1| NADH dehydrogenase [ubiquinone] 1 beta subcompl... 350 5e-97
>ref|NP_004995.1| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8,
mitochondrial precursor [Homo sapiens].
Length = 186
Score = 350 bits (899), Expect = 5e-97
Identities = 154/180 (85%), Positives = 167/180 (92%)
Frame = +3
Query: 51 GVLGVRWLQRAARKVVPLGARTASHITKDMFPGPYPKTPEERAAAAKKYNMRVEDYEPYP 230
GVLGV+WLQRA+R V+PLGARTASH+TKDMFPGPYP+TPEERAAAAKKYNMRVEDYEPYP
Sbjct: 7 GVLGVQWLQRASRNVMPLGARTASHMTKDMFPGPYPRTPEERAAAAKKYNMRVEDYEPYP 66
Query: 231 DDGMGYGDYPKLPDRSQQERDPWYDWDHPDLRLNWGEPIHWDLDMYIRNRVDTSPTPVSW 410
DDGMGYGDYPKLPDRSQ ERDPWY WD P LRLNWGEP+HW LDMY RNRVDTSPTPVSW
Sbjct: 67 DDGMGYGDYPKLPDRSQHERDPWYSWDQPGLRLNWGEPMHWHLDMYNRNRVDTSPTPVSW 126
Query: 411 NTMCKHLFGFVAFMLFMFWVGEIYPSYQPVGPKQYPYNDLYLERGGDPTKEPEPVVHYEI 590
+ MC LFGF+AFM+FM WVG++YP YQPVGPKQYPYN+LYLERGGDP+KEPE VVHYEI
Sbjct: 127 HVMCMQLFGFLAFMIFMCWVGDVYPVYQPVGPKQYPYNNLYLERGGDPSKEPERVVHYEI 186
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 29,070,970
Number of extensions: 836397
Number of successful extensions: 2950
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2935
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 18,297,164
Length adjustment: 99
Effective length of query: 137
Effective length of database: 15,033,728
Effective search space: 2059620736
Effective search space used: 2059620736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003461
(709 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080337.1| NADH dehydrogenase [ubiquinone] 1 beta subcompl... 349 1e-96
>ref|NP_080337.1| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8,
mitochondrial precursor [Mus musculus].
Length = 186
Score = 349 bits (896), Expect = 1e-96
Identities = 153/178 (85%), Positives = 164/178 (92%)
Frame = +3
Query: 57 LGVRWLQRAARKVVPLGARTASHITKDMFPGPYPKTPEERAAAAKKYNMRVEDYEPYPDD 236
LGVRWLQR R VVPL AR A H+TKDM PG YP+TPEERAAAAKKYNMRVEDYEPYPDD
Sbjct: 9 LGVRWLQRTTRGVVPLEARRAFHMTKDMLPGSYPRTPEERAAAAKKYNMRVEDYEPYPDD 68
Query: 237 GMGYGDYPKLPDRSQQERDPWYDWDHPDLRLNWGEPIHWDLDMYIRNRVDTSPTPVSWNT 416
GMGYGDYP LP+RSQ ERDPWY WDH +LR+NWGEPIHWDLDMYIRNRVDTSPTPVSW+
Sbjct: 69 GMGYGDYPMLPNRSQHERDPWYQWDHSELRMNWGEPIHWDLDMYIRNRVDTSPTPVSWDV 128
Query: 417 MCKHLFGFVAFMLFMFWVGEIYPSYQPVGPKQYPYNDLYLERGGDPTKEPEPVVHYEI 590
MCKHLFGFVAFM+FMFWVG ++PSYQPVGPKQYPYN+LYLERGGDPTKEPEPVVHY+I
Sbjct: 129 MCKHLFGFVAFMVFMFWVGHVFPSYQPVGPKQYPYNNLYLERGGDPTKEPEPVVHYDI 186
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,608,915
Number of extensions: 697322
Number of successful extensions: 2409
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2403
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 15,617,559
Length adjustment: 98
Effective length of query: 138
Effective length of database: 12,674,031
Effective search space: 1749016278
Effective search space used: 1749016278
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003461
(709 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001138314.1| NADH dehydrogenase [ubiquinone] 1 beta subco... 397 e-111
Alignment gi|XP_001924237.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1... 139 2e-33
>ref|NP_001138314.1| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8,
mitochondrial [Sus scrofa].
Length = 186
Score = 397 bits (1019), Expect = e-111
Identities = 178/180 (98%), Positives = 179/180 (99%)
Frame = +3
Query: 51 GVLGVRWLQRAARKVVPLGARTASHITKDMFPGPYPKTPEERAAAAKKYNMRVEDYEPYP 230
GVLGVRWLQRAARKVVPLGARTASH+TKDMFPGPYPKTPEERAAAAKKYNMRVEDYEPYP
Sbjct: 7 GVLGVRWLQRAARKVVPLGARTASHVTKDMFPGPYPKTPEERAAAAKKYNMRVEDYEPYP 66
Query: 231 DDGMGYGDYPKLPDRSQQERDPWYDWDHPDLRLNWGEPIHWDLDMYIRNRVDTSPTPVSW 410
DDGMGYGDYPKLPDRSQQERDPWYDWDHPDLRLNWGEPIHWDLDMYIRNRVDTSPTPVSW
Sbjct: 67 DDGMGYGDYPKLPDRSQQERDPWYDWDHPDLRLNWGEPIHWDLDMYIRNRVDTSPTPVSW 126
Query: 411 NTMCKHLFGFVAFMLFMFWVGEIYPSYQPVGPKQYPYNDLYLERGGDPTKEPEPVVHYEI 590
NTMCKHL GFVAFMLFMFWVGEIYPSYQPVGPKQYPYNDLYLERGGDPTKEPEPVVHYEI
Sbjct: 127 NTMCKHLSGFVAFMLFMFWVGEIYPSYQPVGPKQYPYNDLYLERGGDPTKEPEPVVHYEI 186
>ref|XP_001924237.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex
subunit 8, mitochondrial-like, partial [Sus scrofa].
Length = 71
Score = 139 bits (349), Expect = 2e-33
Identities = 64/65 (98%), Positives = 65/65 (100%)
Frame = +3
Query: 51 GVLGVRWLQRAARKVVPLGARTASHITKDMFPGPYPKTPEERAAAAKKYNMRVEDYEPYP 230
GVLGVRWLQRAARKVVPLGARTASH+TKDMFPGPYPKTPEERAAAAKKYNMRVEDYEPYP
Sbjct: 7 GVLGVRWLQRAARKVVPLGARTASHVTKDMFPGPYPKTPEERAAAAKKYNMRVEDYEPYP 66
Query: 231 DDGMG 245
DDGMG
Sbjct: 67 DDGMG 71
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,533,503
Number of extensions: 561342
Number of successful extensions: 1970
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1967
Number of HSP's successfully gapped: 2
Length of query: 236
Length of database: 11,343,932
Length adjustment: 96
Effective length of query: 140
Effective length of database: 8,953,820
Effective search space: 1253534800
Effective search space used: 1253534800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003461
(709 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 644 0.0
gb|GL893404.2| Sus scrofa unplaced genomic scaffold ChrUScaf1289 595 e-167
Sscrofa_Chr04 371 e-100
Sscrofa_Chr01 60 2e-06
>Sscrofa_Chr14
|| Length = 153851969
Score = 644 bits (325), Expect = 0.0
Identities = 559/638 (87%), Gaps = 13/638 (2%)
Strand = Plus / Minus
Query: 47 ggcgggggtactgggagtacgatggctgcaaagggcagcccggaaagtggtgccgttggg 106
||||||||| |||||||| | |||||||||||||||||||||||| |||||| ||||
Sbjct: 97480734 ggcgggggtcctgggagtccaatggctgcaaagggcagcccggaacacggtgccattgga 97480675
Query: 107 tgcacgtacagcctcccatattaccaaggacatgttcccaggaccctatcccaagacccc 166
||||| |||||||||||||||||||| ||||||| ||||||||||| || ||||||||||
Sbjct: 97480674 tgcacatacagcctcccatattaccagggacatgctcccaggacccaattccaagacccc 97480615
Query: 167 ggaagaacgggctgccgccgccaagaagtataatatgcgggtagaagactacgagcctta 226
|||||| ||| ||| || || |||||| ||||||||| |||||||||||| | ||| ||
Sbjct: 97480614 agaagaatgggttgctgctgctaagaagcataatatgcaggtagaagactatgggcccta 97480555
Query: 227 cccagatgatggcatggggtatggtgactacccgaagctccctgaccgctcacagcaaga 286
||||||||||||| |||||||||||||||||| |||| ||| |||| |||||||||| ||
Sbjct: 97480554 cccagatgatggcctggggtatggtgactacctgaagatccttgactgctcacagcagga 97480495
Query: 287 gagggatccatggtatgactgggaccacccagacctgcggttgaactggggtgaaccgat 346
|||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 97480494 gaggcatcc-tggtatgactgggaccacccagacctgtggttgaactggggtgaaccaat 97480436
Query: 347 acactgggacctagacatgtatatcaggaaccgtgtggatacatccccgactcctgtttc 406
| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 97480435 gctctgggacctagacatgtatatcaggaaccgtgtgtatacatccccggctcctgtttc 97480376
Query: 407 ttggaatactatgtgtaagcacctcttcggtttcgtggccttcatgctgttcatgttttg 466
||||||| |||||||||||| |||| || |||||| | ||||||||||||||||||||
Sbjct: 97480375 ttggaatttcatgtgtaagcacttctttggcttcgtgccgttcatgctgttcatgttttg 97480316
Query: 467 ggtaggagagatttaccccagctaccagcctgtggggccaaagcaatatccttacaatga 526
||||| |||| |||||||| ||| ||||||||| ||||||||| ||||
Sbjct: 97480315 agtaggggagacttacccca------------tggagccaaagcagtatccttacgatga 97480268
Query: 527 tctgtacctggaacgaggcggcgatcctaccaaagaacctgagccagtggttcactatga 586
||||||||| |||| |||| | |||| ||||||||||||| || |||||||||||||||
Sbjct: 97480267 tctgtacctagaacaaggcttccatcccaccaaagaacctgggctagtggttcactatga 97480208
Query: 587 gatctgaggaggctttgtgggctttgtgcccctggactgactccctcaatcctagagatt 646
||||| ||||||||||||||||||||| || | |||||||||||| ||||||||||||
Sbjct: 97480207 gatctaaggaggctttgtgggctttgtacctcctaactgactccctccatcctagagatt 97480148
Query: 647 taaccttagtgaaatccctaataaaacatagtgctgtg 684
||||||||||||||||||||||||||||||||||||||
Sbjct: 97480147 taaccttagtgaaatccctaataaaacatagtgctgtg 97480110
Score = 252 bits (127), Expect = 2e-64
Identities = 130/131 (99%)
Strand = Plus / Minus
Query: 116 agcctcccatattaccaaggacatgttcccaggaccctatcccaagaccccggaagaacg 175
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121292614 agcctcccatgttaccaaggacatgttcccaggaccctatcccaagaccccggaagaacg 121292555
Query: 176 ggctgccgccgccaagaagtataatatgcgggtagaagactacgagccttacccagatga 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121292554 ggctgccgccgccaagaagtataatatgcgggtagaagactacgagccttacccagatga 121292495
Query: 236 tggcatggggt 246
|||||||||||
Sbjct: 121292494 tggcatggggt 121292484
Score = 230 bits (116), Expect = 8e-58
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 2 atgtgcggggtgaaactggaagaaggtgaagatggcggcggccaaggcgggggtactggg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121292993 atgtgcggggtgaaactggaagaaggtgaagatggcggcggccaaggcgggggtactggg 121292934
Query: 62 agtacgatggctgcaaagggcagcccggaaagtggtgccgttgggtgcacgtacag 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121292933 agtacgatggctgcaaagggcagcccggaaagtggtgccgttgggtgcacgtacag 121292878
>gb|GL893404.2| Sus scrofa unplaced genomic scaffold ChrUScaf1289
Length = 72069
Score = 595 bits (300), Expect = e-167
Identities = 534/613 (87%), Gaps = 13/613 (2%)
Strand = Plus / Minus
Query: 47 ggcgggggtactgggagtacgatggctgcaaagggcagcccggaaagtggtgccgttggg 106
||||||||| |||||||| | |||||||||||||||||||||||| |||||| ||||
Sbjct: 55651 ggcgggggtcctgggagtccaatggctgcaaagggcagcccggaacacggtgccattgga 55592
Query: 107 tgcacgtacagcctcccatattaccaaggacatgttcccaggaccctatcccaagacccc 166
||||| |||||||||||||||||||| ||||||| ||||||||||| || ||||||||||
Sbjct: 55591 tgcacatacagcctcccatattaccagggacatgctcccaggacccaattccaagacccc 55532
Query: 167 ggaagaacgggctgccgccgccaagaagtataatatgcgggtagaagactacgagcctta 226
|||||| ||| ||| || || |||||| ||||||||| |||||||||||| | ||| ||
Sbjct: 55531 agaagaatgggttgctgctgctaagaagcataatatgcaggtagaagactatgggcccta 55472
Query: 227 cccagatgatggcatggggtatggtgactacccgaagctccctgaccgctcacagcaaga 286
||||||||||||| |||||||||||||||||| |||| ||| |||| |||||||||| ||
Sbjct: 55471 cccagatgatggcctggggtatggtgactacctgaagatccttgactgctcacagcagga 55412
Query: 287 gagggatccatggtatgactgggaccacccagacctgcggttgaactggggtgaaccgat 346
|||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 55411 gaggcatcc-tggtatgactgggaccacccagacctgtggttgaactggggtgaaccaat 55353
Query: 347 acactgggacctagacatgtatatcaggaaccgtgtggatacatccccgactcctgtttc 406
| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 55352 gctctgggacctagacatgtatatcaggaaccgtgtgtatacatccccggctcctgtttc 55293
Query: 407 ttggaatactatgtgtaagcacctcttcggtttcgtggccttcatgctgttcatgttttg 466
||||||| |||||||||||| |||| || |||||| | ||||||||||||||||||||
Sbjct: 55292 ttggaatttcatgtgtaagcacttctttggcttcgtgccgttcatgctgttcatgttttg 55233
Query: 467 ggtaggagagatttaccccagctaccagcctgtggggccaaagcaatatccttacaatga 526
||||| |||| |||||||| ||| ||||||||| ||||||||| ||||
Sbjct: 55232 agtaggggagacttacccca------------tggagccaaagcagtatccttacgatga 55185
Query: 527 tctgtacctggaacgaggcggcgatcctaccaaagaacctgagccagtggttcactatga 586
||||||||| |||| |||| | |||| ||||||||||||| || |||||||||||||||
Sbjct: 55184 tctgtacctagaacaaggcttccatcccaccaaagaacctgggctagtggttcactatga 55125
Query: 587 gatctgaggaggctttgtgggctttgtgcccctggactgactccctcaatcctagagatt 646
||||| ||||||||||||||||||||| || | |||||||||||| ||||||||||||
Sbjct: 55124 gatctaaggaggctttgtgggctttgtacctcctaactgactccctccatcctagagatt 55065
Query: 647 taaccttagtgaa 659
|||||||||||||
Sbjct: 55064 taaccttagtgaa 55052
>Sscrofa_Chr04
|| Length = 143465943
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Plus
Query: 500 ggggccaaagcaatatccttacaatgatctgtacctggaacgaggcggcgatcctaccaa 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63916241 ggggccaaagcaatatccttacaatgatctgtacctggaacgaggcggcgatcctaccaa 63916300
Query: 560 agaacctgagccagtggttcactatgagatctgaggaggctttgtgggctttgtgcccct 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63916301 agaacctgagccagtggttcactatgagatctgaggaggctttgtgggctttgtgcccct 63916360
Query: 620 ggactgactccctcaatcctagagatttaaccttagtgaaatccctaataaaacatagtg 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63916361 ggactgactccctcaatcctagagatttaaccttagtgaaatccctaataaaacatagtg 63916420
Query: 680 ctgtgct 686
|||||||
Sbjct: 63916421 ctgtgct 63916427
Score = 313 bits (158), Expect = 7e-83
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 344 gatacactgggacctagacatgtatatcaggaaccgtgtggatacatccccgactcctgt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63913828 gatacactgggacctagacatgtatatcaggaaccgtgtggatacatccccgactcctgt 63913887
Query: 404 ttcttggaatactatgtgtaagcacctcttcggtttcgtggccttcatgctgttcatgtt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63913888 ttcttggaatactatgtgtaagcacctcttcggtttcgtggccttcatgctgttcatgtt 63913947
Query: 464 ttgggtaggagagatttaccccagctaccagcctgtgg 501
||||||||||||||||||||||||||||||||||||||
Sbjct: 63913948 ttgggtaggagagatttaccccagctaccagcctgtgg 63913985
Score = 252 bits (127), Expect = 2e-64
Identities = 130/131 (99%)
Strand = Plus / Plus
Query: 116 agcctcccatattaccaaggacatgttcccaggaccctatcccaagaccccggaagaacg 175
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63910245 agcctcccatgttaccaaggacatgttcccaggaccctatcccaagaccccggaagaacg 63910304
Query: 176 ggctgccgccgccaagaagtataatatgcgggtagaagactacgagccttacccagatga 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63910305 ggctgccgccgccaagaagtataatatgcgggtagaagactacgagccttacccagatga 63910364
Query: 236 tggcatggggt 246
|||||||||||
Sbjct: 63910365 tggcatggggt 63910375
Score = 230 bits (116), Expect = 8e-58
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 2 atgtgcggggtgaaactggaagaaggtgaagatggcggcggccaaggcgggggtactggg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63909866 atgtgcggggtgaaactggaagaaggtgaagatggcggcggccaaggcgggggtactggg 63909925
Query: 62 agtacgatggctgcaaagggcagcccggaaagtggtgccgttgggtgcacgtacag 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63909926 agtacgatggctgcaaagggcagcccggaaagtggtgccgttgggtgcacgtacag 63909981
Score = 200 bits (101), Expect = 7e-49
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 244 ggtatggtgactacccgaagctccctgaccgctcacagcaagagagggatccatggtatg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63913253 ggtatggtgactacccgaagctccctgaccgctcacagcaagagagggatccatggtatg 63913312
Query: 304 actgggaccacccagacctgcggttgaactggggtgaaccg 344
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 63913313 actgggaccacccagacctgcggttgaactggggtgaaccg 63913353
>Sscrofa_Chr01
|| Length = 315321322
Score = 60.0 bits (30), Expect = 2e-06
Identities = 88/107 (82%), Gaps = 4/107 (3%)
Strand = Plus / Minus
Query: 556 ccaaagaacctgagccagtggttcactatgagatctgaggaggctttgtgggctttgtgc 615
||||||| ||| ||| |||| ||||| ||||||| | |||||||| |||| ||||||||
Sbjct: 202192988 ccaaagagcctaagctggtggctcactgtgagatccggggaggcttggtggactttgtgc 202192929
Query: 616 ccctggactgactccctcaatcctagagatttaaccttagtgaaatc 662
||| ||||||| |||| ||||||||||| |||| || |||||||
Sbjct: 202192928 ccc----ctgactctctcattcctagagattgaaccataatgaaatc 202192886
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 16,703,175
Number of extensions: 307
Number of successful extensions: 307
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 12
Length of query: 709
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 688
Effective length of database: 2,808,413,156
Effective search space: 1932188251328
Effective search space used: 1932188251328
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)