Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003465
(971 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073786.1| 39S ribosomal protein L3, mitochondrial [Bos... 511 e-145
>ref|NP_001073786.1| 39S ribosomal protein L3, mitochondrial [Bos taurus].
Length = 348
Score = 511 bits (1316), Expect = e-145
Identities = 239/256 (93%), Positives = 249/256 (97%)
Frame = +1
Query: 202 GLGASRGLGNRTDICLLVRSLHGKSVTWWDEHLSEENVPFVKQLVSDENKAQLASKLCPL 381
GLG + G GNRTDIC+LVRSLHGKS TWWDEHLSEENV FVKQLVSDENKAQLASKLCPL
Sbjct: 21 GLGTALGSGNRTDICVLVRSLHGKSGTWWDEHLSEENVSFVKQLVSDENKAQLASKLCPL 80
Query: 382 KDEPWPIHPWEPGSSRVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTPKENHNG 561
KDEPWPIHPWEPGSSRVGL+ALKLGMMPLWTKDG+KHVVTLLQVQDCHVLKYTPKENHNG
Sbjct: 81 KDEPWPIHPWEPGSSRVGLVALKLGMMPLWTKDGKKHVVTLLQVQDCHVLKYTPKENHNG 140
Query: 562 RMAALTVGGKTVSHFHKSASILEFYQELGLPPKQKVKIFNVTENAVIKPGTPLYAAHFRP 741
+MAALTVGGKTVS FHKS SILEFYQELGLPPKQK+K+FNVT+NAVIKPGTPLYAAHFRP
Sbjct: 141 KMAALTVGGKTVSRFHKSTSILEFYQELGLPPKQKIKMFNVTDNAVIKPGTPLYAAHFRP 200
Query: 742 GQYVDVTAKTIGKGFQGVMRRWGFKGQPATHGQTKTHRRPGAISTGDVARVWPGTKMPGQ 921
GQYVDVTAKTIGKGFQGVM+RWGFKGQPATHGQTKTHRRPGAISTGDVARVWPGTKMPGQ
Sbjct: 201 GQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTGDVARVWPGTKMPGQ 260
Query: 922 LGNIDRTAFGLKVWRI 969
LGN+DRTAFGLKVWRI
Sbjct: 261 LGNVDRTAFGLKVWRI 276
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,386,645
Number of extensions: 1073246
Number of successful extensions: 7154
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6879
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 221
Effective length of database: 14,306,398
Effective search space: 3161713958
Effective search space used: 3161713958
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003465
(971 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534263.2| PREDICTED: similar to Mitochondrial 39S ribosom... 505 e-143
>ref|XP_534263.2| PREDICTED: similar to Mitochondrial 39S ribosomal protein L3 (L3mt)
(MRP-L3) [Canis familiaris].
Length = 456
Score = 505 bits (1301), Expect = e-143
Identities = 244/298 (81%), Positives = 261/298 (87%)
Frame = +1
Query: 76 NALKAEWRGAQRCSGRALLGLTMPXXXXXXXXXXXXXXXXXDGLGASRGLGNRTDICLLV 255
+ALKAE R A++ SG + G +M G GA+RG NRTDI LLV
Sbjct: 87 DALKAERRDARKSSGASPPGHSMSGWRLLAQAGAQVLGCSAGGPGAARGSANRTDIWLLV 146
Query: 256 RSLHGKSVTWWDEHLSEENVPFVKQLVSDENKAQLASKLCPLKDEPWPIHPWEPGSSRVG 435
RSLHG+S TWWDEHLSEENV FVKQL SDENKAQLASKLCPLKDEPWP+HPWEPGSSRVG
Sbjct: 147 RSLHGRSGTWWDEHLSEENVTFVKQLASDENKAQLASKLCPLKDEPWPLHPWEPGSSRVG 206
Query: 436 LIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTPKENHNGRMAALTVGGKTVSHFHKS 615
LIALKLGMMPLWTKDG++HVVTLLQVQDCHVLKYTPKENHNG+MAALTVGGKTVS FHKS
Sbjct: 207 LIALKLGMMPLWTKDGKRHVVTLLQVQDCHVLKYTPKENHNGKMAALTVGGKTVSRFHKS 266
Query: 616 ASILEFYQELGLPPKQKVKIFNVTENAVIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGV 795
S+LEFYQELGLPPKQKVKIF+VT+NAVIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGV
Sbjct: 267 TSVLEFYQELGLPPKQKVKIFHVTDNAVIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGV 326
Query: 796 MRRWGFKGQPATHGQTKTHRRPGAISTGDVARVWPGTKMPGQLGNIDRTAFGLKVWRI 969
M+RWGFKGQPATHGQTKTHRRPGAISTGDVARVWPGTKMPGQ+GN DRT +GLKVWRI
Sbjct: 327 MKRWGFKGQPATHGQTKTHRRPGAISTGDVARVWPGTKMPGQMGNKDRTEYGLKVWRI 384
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,967,141
Number of extensions: 1104077
Number of successful extensions: 6873
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6649
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 220
Effective length of database: 15,440,896
Effective search space: 3396997120
Effective search space used: 3396997120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003465
(971 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_009139.1| 39S ribosomal protein L3, mitochondrial [Homo s... 475 e-134
>ref|NP_009139.1| 39S ribosomal protein L3, mitochondrial [Homo sapiens].
Length = 348
Score = 475 bits (1223), Expect = e-134
Identities = 222/257 (86%), Positives = 238/257 (92%)
Frame = +1
Query: 199 DGLGASRGLGNRTDICLLVRSLHGKSVTWWDEHLSEENVPFVKQLVSDENKAQLASKLCP 378
DGLGA+ G GNRT I L VR LHGKS TWWDEHLSEENVPF+KQLVSDE+KAQLASKLCP
Sbjct: 20 DGLGAALGPGNRTHIWLFVRGLHGKSGTWWDEHLSEENVPFIKQLVSDEDKAQLASKLCP 79
Query: 379 LKDEPWPIHPWEPGSSRVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTPKENHN 558
LKDEPWPIHPWEPGS RVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYT KEN N
Sbjct: 80 LKDEPWPIHPWEPGSFRVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCN 139
Query: 559 GRMAALTVGGKTVSHFHKSASILEFYQELGLPPKQKVKIFNVTENAVIKPGTPLYAAHFR 738
G+MA L+VGGKTVS F K+ SILEFY+ELGLPPKQ VKIFN+T+NA IKPGTPLYAAHFR
Sbjct: 140 GKMATLSVGGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFR 199
Query: 739 PGQYVDVTAKTIGKGFQGVMRRWGFKGQPATHGQTKTHRRPGAISTGDVARVWPGTKMPG 918
PGQYVDVTAKTIGKGFQGVM+RWGFKGQPATHGQTKTHRRPGA++TGD+ RVWPGTKMPG
Sbjct: 200 PGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATGDIGRVWPGTKMPG 259
Query: 919 QLGNIDRTAFGLKVWRI 969
++GNI RT +GLKVWRI
Sbjct: 260 KMGNIYRTEYGLKVWRI 276
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,286,298
Number of extensions: 1084836
Number of successful extensions: 6987
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6752
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 220
Effective length of database: 14,901,872
Effective search space: 3278411840
Effective search space used: 3278411840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003465
(971 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_444389.2| 39S ribosomal protein L3, mitochondrial [Mus mu... 453 e-127
>ref|NP_444389.2| 39S ribosomal protein L3, mitochondrial [Mus musculus].
Length = 348
Score = 453 bits (1165), Expect = e-127
Identities = 212/256 (82%), Positives = 232/256 (90%)
Frame = +1
Query: 202 GLGASRGLGNRTDICLLVRSLHGKSVTWWDEHLSEENVPFVKQLVSDENKAQLASKLCPL 381
GLGA GL R +I VR+LH KS TWWDEHLSEEN+ FVKQLVSDENK QL SKL PL
Sbjct: 21 GLGADPGLERRKNILFFVRNLHSKSSTWWDEHLSEENLSFVKQLVSDENKTQLTSKLNPL 80
Query: 382 KDEPWPIHPWEPGSSRVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTPKENHNG 561
KDEPWP+HPWEPGS RVGLIALKLGMMPLWTKDGQKH VTLLQVQDCHVLKYTPKE+HNG
Sbjct: 81 KDEPWPLHPWEPGSFRVGLIALKLGMMPLWTKDGQKHAVTLLQVQDCHVLKYTPKEDHNG 140
Query: 562 RMAALTVGGKTVSHFHKSASILEFYQELGLPPKQKVKIFNVTENAVIKPGTPLYAAHFRP 741
++AALTVGGKTVS F+K S LEFY++LGLPPKQ KIF+VT+NAVIKPGTPLYAAHFRP
Sbjct: 141 KIAALTVGGKTVSRFYKPDSRLEFYRDLGLPPKQIHKIFHVTDNAVIKPGTPLYAAHFRP 200
Query: 742 GQYVDVTAKTIGKGFQGVMRRWGFKGQPATHGQTKTHRRPGAISTGDVARVWPGTKMPGQ 921
GQYVDVTAKTIGKGFQGVM+RWGFKGQPA+HGQTKTHRRPGAISTGD+ARVWPGTKMPG+
Sbjct: 201 GQYVDVTAKTIGKGFQGVMKRWGFKGQPASHGQTKTHRRPGAISTGDIARVWPGTKMPGR 260
Query: 922 LGNIDRTAFGLKVWRI 969
+GN +RT +GLKVWR+
Sbjct: 261 MGNQNRTVYGLKVWRV 276
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,424,470
Number of extensions: 903484
Number of successful extensions: 5428
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5201
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 221
Effective length of database: 12,553,887
Effective search space: 2774409027
Effective search space used: 2774409027
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003465
(971 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925073.2| PREDICTED: 39S ribosomal protein L3, mitocho... 588 e-168
>ref|XP_001925073.2| PREDICTED: 39S ribosomal protein L3, mitochondrial [Sus scrofa].
Length = 399
Score = 588 bits (1516), Expect = e-168
Identities = 287/323 (88%), Positives = 287/323 (88%)
Frame = +1
Query: 1 ALLPSWXXXXXXXXXXXXXXXXXXXNALKAEWRGAQRCSGRALLGLTMPXXXXXXXXXXX 180
ALLPSW NALKAEWRGAQRCSGRALLGLTMP
Sbjct: 5 ALLPSWGQRGAAAGGGGKAWEGRRRNALKAEWRGAQRCSGRALLGLTMPGWGLLGRAGAR 64
Query: 181 XXXXXXDGLGASRGLGNRTDICLLVRSLHGKSVTWWDEHLSEENVPFVKQLVSDENKAQL 360
DGLGASRGLGNRTDICLLVRSLHGKSVTWWDEHLSEENVPFVKQLVSDENKAQL
Sbjct: 65 VLGCGADGLGASRGLGNRTDICLLVRSLHGKSVTWWDEHLSEENVPFVKQLVSDENKAQL 124
Query: 361 ASKLCPLKDEPWPIHPWEPGSSRVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYT 540
ASKLCPLKDEPWPIHPWEPGSSRVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYT
Sbjct: 125 ASKLCPLKDEPWPIHPWEPGSSRVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYT 184
Query: 541 PKENHNGRMAALTVGGKTVSHFHKSASILEFYQELGLPPKQKVKIFNVTENAVIKPGTPL 720
PKENHNGRMAALTVGGKTVSHFHKSASILEFYQELGLPPKQKVKIFNVTENAVIKPGTPL
Sbjct: 185 PKENHNGRMAALTVGGKTVSHFHKSASILEFYQELGLPPKQKVKIFNVTENAVIKPGTPL 244
Query: 721 YAAHFRPGQYVDVTAKTIGKGFQGVMRRWGFKGQPATHGQTKTHRRPGAISTGDVARVWP 900
YAAHFRPGQYVDVTAKTIGKGFQGVMRRWGFKGQPATHGQTKTHRRPGAISTGDVARVWP
Sbjct: 245 YAAHFRPGQYVDVTAKTIGKGFQGVMRRWGFKGQPATHGQTKTHRRPGAISTGDVARVWP 304
Query: 901 GTKMPGQLGNIDRTAFGLKVWRI 969
GTKMPGQLGNIDRTAFGLKVWRI
Sbjct: 305 GTKMPGQLGNIDRTAFGLKVWRI 327
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,101,423
Number of extensions: 691910
Number of successful extensions: 4670
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4477
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 224
Effective length of database: 8,879,129
Effective search space: 1988924896
Effective search space used: 1988924896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003465
(971 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 462 e-127
Sscrofa_Chr01 309 2e-81
>Sscrofa_Chr13
|| Length = 218635234
Score = 462 bits (233), Expect = e-127
Identities = 233/233 (100%)
Strand = Plus / Plus
Query: 1 gctcttcttccgtcgtgggggcagcggggagcagcggctggcggcggcggaaaggcttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763852 gctcttcttccgtcgtgggggcagcggggagcagcggctggcggcggcggaaaggcttgg 763911
Query: 61 gagggtcggcggcggaacgccctgaaagcggagtggcggggcgcccagaggtgtagcggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763912 gagggtcggcggcggaacgccctgaaagcggagtggcggggcgcccagaggtgtagcggt 763971
Query: 121 cgcgccctcctcggcctcactatgcccggctgggggctgctgggtagggccggcgcccgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763972 cgcgccctcctcggcctcactatgcccggctgggggctgctgggtagggccggcgcccgg 764031
Query: 181 gtactgggctgcggcgcggatggcctgggtgcctcccggggcttgggaaacag 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764032 gtactgggctgcggcgcggatggcctgggtgcctcccggggcttgggaaacag 764084
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 230 acagaacagacatctgtcttttggttagaagtctccatggcaagagtgttacttggtggg 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765083 acagaacagacatctgtcttttggttagaagtctccatggcaagagtgttacttggtggg 765142
Query: 290 atgagcatctttctgaagaaaacgttccctttgttaagcagttggtctctgatgaaaata 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765143 atgagcatctttctgaagaaaacgttccctttgttaagcagttggtctctgatgaaaata 765202
Query: 350 aagcccaattagcaagtaaactctgtcctctgaaagatgagccatggcctatacaccctt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765203 aagcccaattagcaagtaaactctgtcctctgaaagatgagccatggcctatacaccctt 765262
Query: 410 gggaaccaggt 420
|||||||||||
Sbjct: 765263 gggaaccaggt 765273
Score = 218 bits (110), Expect = 4e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 771 tattggcaaaggttttcaaggtgtcatgagaagatggggatttaaaggccagcctgctac 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790929 tattggcaaaggttttcaaggtgtcatgagaagatggggatttaaaggccagcctgctac 790988
Query: 831 tcatggtcaaacgaaaacccacaggaggcctggagctatttcaactggtg 880
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790989 tcatggtcaaacgaaaacccacaggaggcctggagctatttcaactggtg 791038
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 509 aggtacaagactgtcatgtcctaaaatatactccaaaggaaaatcataatggaagaatgg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768256 aggtacaagactgtcatgtcctaaaatatactccaaaggaaaatcataatggaagaatgg 768315
Query: 569 cagccctaactgtaggaggaaaaactgtatcacatttccat 609
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 768316 cagccctaactgtaggaggaaaaactgtatcacatttccat 768356
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 610 aaatctgcatctatattggaattttaccaggaacttggattgcctccaaaacagaaagtt 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779779 aaatctgcatctatattggaattttaccaggaacttggattgcctccaaaacagaaagtt 779838
Query: 670 aaaatctttaatgtaacagaaaatgctgtaattaagccagg 710
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 779839 aaaatctttaatgtaacagaaaatgctgtaattaagccagg 779879
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 415 ccaggttcctctagagtaggcctcattgcactgaagctaggcatgatgcccttatggacc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766262 ccaggttcctctagagtaggcctcattgcactgaagctaggcatgatgcccttatggacc 766321
Query: 475 aaagatggtcagaagcatgtagtcacgttacttcaggta 513
|||||||||||||||||||||||||||||||||||||||
Sbjct: 766322 aaagatggtcagaagcatgtagtcacgttacttcaggta 766360
Score = 159 bits (80), Expect = 3e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 880 gatgttgccagagtgtggcctggaactaaaatgcctggacagttggggaacatcgatagg 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794194 gatgttgccagagtgtggcctggaactaaaatgcctggacagttggggaacatcgatagg 794253
Query: 940 acagcatttggactgaaagt 959
||||||||||||||||||||
Sbjct: 794254 acagcatttggactgaaagt 794273
Score = 125 bits (63), Expect = 5e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 708 aggcacccctctatacgctgctcactttcgtccaggacagtatgtggatgtcacggccaa 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781674 aggcacccctctatacgctgctcactttcgtccaggacagtatgtggatgtcacggccaa 781733
Query: 768 aac 770
|||
Sbjct: 781734 aac 781736
>Sscrofa_Chr01
|| Length = 315321322
Score = 309 bits (156), Expect = 2e-81
Identities = 512/623 (82%), Gaps = 7/623 (1%)
Strand = Plus / Plus
Query: 344 aaaataaagcccaattagcaagtaaactctgtcctctgaaagatgagccatggcctatac 403
||||||||||||| ||| |||||||| |||||||||||| |||| |||||||||||||
Sbjct: 140751033 aaaataaagcccagttattaagtaaaccatgtcctctgaaaaatgaaccatggcctatac 140751092
Query: 404 acccttgggaaccaggttcctctagagtaggcctcattgcactgaagctaggcatgatgc 463
| |||||||||||| | |||||||| ||||| || |||||||||| ||||||||||
Sbjct: 140751093 attcttgggaaccagatcgctctagagctggccttatcacactgaagctgggcatgatgc 140751152
Query: 464 ccttatggaccaaagatggtcagaagcatgtagtcacgttacttcaggtacaagactgtc 523
| ||||||||||| |||||||| ||| | || || | ||| || | || |||||||||
Sbjct: 140751153 c-ttatggaccaaggatggtcaaaagtaa-ta-tctcattatttaacatataagactgtc 140751209
Query: 524 atgtcctaaaatatactccaaaggaaaatcataatggaagaatggcagccctaactgtag 583
| ||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||
Sbjct: 140751210 acatcctaaaatatactccaaaggaaaaccataatggaa-aatggcagctctaactgtag 140751268
Query: 584 gaggaaaaactgtatcacatttccataaatctgcatctatattggaattttaccaggaac 643
|||||||||| ||||||||||| ||||||| |||||||||||||| ||||| | ||||
Sbjct: 140751269 gaggaaaaaccatatcacatttctgtaaatctacatctatattggaaatttactaagaac 140751328
Query: 644 ttggattgcctccaaaacagaaagttaaaatctttaatgtaacagaaaatgctgtaatta 703
||||||||| ||| || ||||||||||| |||| | |||||||| || || || ||||
Sbjct: 140751329 ttggattgctgccagtaccgaaagttaaaacctttcacgtaacagacaacgcagtcatta 140751388
Query: 704 agccaggcacccctctatacgctgctcactttcgtccaggacagtatgtggatgtcacgg 763
| |||||||| | | || |||||||| |||| ||| ||||||||||| |||||||
Sbjct: 140751389 aaccaggcactctttgctaggctgctcattttctcccaagacagtatgtgaatgtcacaa 140751448
Query: 764 ccaaaac--tattggcaaaggttttcaaggtgtcatgagaagatggggatttaaaggcca 821
| ||||| |||| ||||||||||||| ||||||| || || |||||||||||||||
Sbjct: 140751449 caaaaactgtattcataaaggttttcaagacgtcatgaaaatat-gggatttaaaggcca 140751507
Query: 822 gcctgctactcatggtcaaacgaaaacccacaggaggcctggagctatttcaactggtga 881
|||| || ||||||||||| || | |||| |||| || || | ||||||| |||
Sbjct: 140751508 gcctattatacatggtcaaacaaagatccacgggagagctagaacaatttcaatcaatga 140751567
Query: 882 tgttgccagagtgtggcctggaactaaaatgcctggacagttggggaacatcgataggac 941
||||| |||||| |||||||||||||||||||||||||| |||| | | |||| |||
Sbjct: 140751568 tgttgtcagagtctggcctggaactaaaatgcctggacaaatgggaagaacagataagac 140751627
Query: 942 agcatttggactgaaagtgtgga 964
||||| ||||| |||||||||||
Sbjct: 140751628 agcatatggacggaaagtgtgga 140751650
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,945,142
Number of extensions: 183
Number of successful extensions: 183
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 11
Length of query: 971
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 950
Effective length of database: 2,808,413,156
Effective search space: 2667992498200
Effective search space used: 2667992498200
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)