Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003468
(779 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029956.1| mitochondrial fission 1 protein [Bos taurus]. 239 3e-63
>ref|NP_001029956.1| mitochondrial fission 1 protein [Bos taurus].
Length = 152
Score = 239 bits (609), Expect = 3e-63
Identities = 121/123 (98%), Positives = 122/123 (99%)
Frame = +2
Query: 95 MEAVLNELVSVEDLLKFERKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGLALLEE 274
MEAVLNELVSVEDLLKFERKF+SEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGLALLEE
Sbjct: 1 MEAVLNELVSVEDLLKFERKFKSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGLALLEE 60
Query: 275 LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELEGLIDKAMKK 454
LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE LIDKAMKK
Sbjct: 61 LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 120
Query: 455 DGL 463
DGL
Sbjct: 121 DGL 123
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,981,489
Number of extensions: 916164
Number of successful extensions: 4263
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4232
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 159
Effective length of database: 14,372,574
Effective search space: 2285239266
Effective search space used: 2285239266
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003468
(779 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536854.1| PREDICTED: similar to Tetratricopeptide repeat ... 237 8e-63
>ref|XP_536854.1| PREDICTED: similar to Tetratricopeptide repeat protein 11 (TPR
repeat protein 11) (Fis1 homolog) [Canis familiaris].
Length = 152
Score = 237 bits (605), Expect = 8e-63
Identities = 119/123 (96%), Positives = 122/123 (99%)
Frame = +2
Query: 95 MEAVLNELVSVEDLLKFERKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGLALLEE 274
MEAVLNELVSV+DLLKFE+KFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKG+ALLEE
Sbjct: 1 MEAVLNELVSVDDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIALLEE 60
Query: 275 LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELEGLIDKAMKK 454
LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE LIDKAMKK
Sbjct: 61 LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 120
Query: 455 DGL 463
DGL
Sbjct: 121 DGL 123
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,208,366
Number of extensions: 923168
Number of successful extensions: 4585
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4575
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 158
Effective length of database: 15,507,568
Effective search space: 2450195744
Effective search space used: 2450195744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003468
(779 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057152.2| mitochondrial fission 1 protein [Homo sapiens]. 237 1e-62
>ref|NP_057152.2| mitochondrial fission 1 protein [Homo sapiens].
Length = 152
Score = 237 bits (604), Expect = 1e-62
Identities = 119/123 (96%), Positives = 121/123 (98%)
Frame = +2
Query: 95 MEAVLNELVSVEDLLKFERKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGLALLEE 274
MEAVLNELVSVEDLLKFE+KFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKG+ LLEE
Sbjct: 1 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEE 60
Query: 275 LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELEGLIDKAMKK 454
LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE LIDKAMKK
Sbjct: 61 LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 120
Query: 455 DGL 463
DGL
Sbjct: 121 DGL 123
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,571,931
Number of extensions: 899822
Number of successful extensions: 4394
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4370
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 159
Effective length of database: 15,000,764
Effective search space: 2385121476
Effective search space used: 2385121476
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003468
(779 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079838.1| mitochondrial fission 1 protein isoform 1 [Mus ... 229 1e-60
Alignment gi|NP_001156715.1| mitochondrial fission 1 protein isoform 2 [M... 206 2e-53
>ref|NP_079838.1| mitochondrial fission 1 protein isoform 1 [Mus musculus].
Length = 152
Score = 229 bits (585), Expect = 1e-60
Identities = 115/123 (93%), Positives = 119/123 (96%)
Frame = +2
Query: 95 MEAVLNELVSVEDLLKFERKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGLALLEE 274
MEAVLNELVSVEDL FERKFQSE+AAGSVSKSTQFEYAWCLVRSKYN+DIR+G+ LLEE
Sbjct: 1 MEAVLNELVSVEDLKNFERKFQSEQAAGSVSKSTQFEYAWCLVRSKYNEDIRRGIVLLEE 60
Query: 275 LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELEGLIDKAMKK 454
LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE LIDKAMKK
Sbjct: 61 LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 120
Query: 455 DGL 463
DGL
Sbjct: 121 DGL 123
>ref|NP_001156715.1| mitochondrial fission 1 protein isoform 2 [Mus musculus].
Length = 145
Score = 206 bits (523), Expect = 2e-53
Identities = 101/107 (94%), Positives = 105/107 (98%)
Frame = +2
Query: 143 FERKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGLALLEELLPKGSKEEQRDYVFY 322
FERKFQSE+AAGSVSKSTQFEYAWCLVRSKYN+DIR+G+ LLEELLPKGSKEEQRDYVFY
Sbjct: 10 FERKFQSEQAAGSVSKSTQFEYAWCLVRSKYNEDIRRGIVLLEELLPKGSKEEQRDYVFY 69
Query: 323 LAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELEGLIDKAMKKDGL 463
LAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE LIDKAMKKDGL
Sbjct: 70 LAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKDGL 116
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,712,696
Number of extensions: 751537
Number of successful extensions: 3516
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3489
Number of HSP's successfully gapped: 2
Length of query: 259
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 160
Effective length of database: 12,643,995
Effective search space: 2023039200
Effective search space used: 2023039200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003468
(779 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362140.1| PREDICTED: hypothetical protein LOC100622909... 237 5e-63
>ref|XP_003362140.1| PREDICTED: hypothetical protein LOC100622909 [Sus scrofa].
Length = 255
Score = 237 bits (605), Expect = 5e-63
Identities = 120/120 (100%), Positives = 120/120 (100%)
Frame = +2
Query: 95 MEAVLNELVSVEDLLKFERKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGLALLEE 274
MEAVLNELVSVEDLLKFERKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGLALLEE
Sbjct: 1 MEAVLNELVSVEDLLKFERKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGLALLEE 60
Query: 275 LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELEGLIDKAMKK 454
LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELEGLIDKAMKK
Sbjct: 61 LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELEGLIDKAMKK 120
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,168,313
Number of extensions: 613262
Number of successful extensions: 2707
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2696
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 162
Effective length of database: 8,928,923
Effective search space: 1446485526
Effective search space used: 1446485526
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003468
(779 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892930.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 464 e-128
gb|GL896338.2| Sus scrofa unplaced genomic scaffold ChrUScaf4222 274 7e-71
gb|GL894574.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 242 2e-61
>gb|GL892930.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1746
Length = 35202
Score = 464 bits (234), Expect = e-128
Identities = 494/577 (85%), Gaps = 19/577 (3%)
Strand = Plus / Minus
Query: 35 gggccatggagactgtggcacagtagcgtctgagtagtgaggattgcgaggccgacggcc 94
|||||||||| ||||||||||||||| |||| || |||||||| || | | |||||
Sbjct: 6643 gggccatggaagctgtggcacagtagcatctgcgttttgaggattacgggaatggcggcc 6584
Query: 95 atggaggccgtgctgaacgagttggtgtctgtggaggatctgctgaaatttgaaaggaaa 154
|||||||| ||||||| ||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 6583 atggaggctgtgctgagtgagttggtgtctgtgaaggatctgctgaagtttgaaaggaaa 6524
Query: 155 tttcagtctgagaaggcagcaggctcggtgtccaagagcacgcagtttgaatatgcctgg 214
|||||||||||||||||||||| ||| |||| | | |||||||||||||||||
Sbjct: 6523 tttcagtctgagaaggcagcag-ctc-------aagatctcacagtttgaatatgcctga 6472
Query: 215 tgtctggtgcgaagcaagtacaacgatgacatccgtaaaggccttgctctgctggaggag 274
|| ||||||| ||||||| | || |||| ||||||||||||||||||||||||||
Sbjct: 6471 tgcctggtgc-----aagtacagcagtggcatctgtaaaggccttgctctgctggaggag 6417
Query: 275 ctgctacccaaagggagcaaagaggagcagcgggattatgtcttctacctggccgtgggg 334
||||| |||||| ||| ||||||||| ||| ||||| |||||| | |||||| || |||
Sbjct: 6416 ctgctgcccaaaaggaacaaagaggaacagtaggattgtgtctttt-cctggctgtaggg 6358
Query: 335 aactaccggctcaaggaatatgaaaaggccctaaagtatgtgcgcgggctgctgcagaca 394
|||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 6357 aactactggctcaaggaatatgaaaaggccctaaagtgtgtgcaagggctgctgcagaca 6298
Query: 395 gagccacagaacaaccaggccaaggaactggaagggctcattgacaaggccatgaagaaa 454
||||| ||||||||||||||| ||||||| ||| |||||||||||||||||||| ||||
Sbjct: 6297 gagccgcagaacaaccaggccgaggaactagaacagctcattgacaaggccatgacgaaa 6238
Query: 455 gatggactagtgggcatggccattgttggaggcatggccctgggcgtggccggactggct 514
||||||||||||||||||| |||| ||||||||||||||| ||||||||| |||||||||
Sbjct: 6237 gatggactagtgggcatgg-cattattggaggcatggcccagggcgtggcaggactggct 6179
Query: 515 ggactca----ttggacttgctgtatccaagtccaaatcctgaacgagactgcatctccg 570
||||||| ||| ||||| |||||||||| ||||| ||||| |||||||||||||
Sbjct: 6178 ggactcatcatttgtacttgtggtatccaagtacaaatactgaatgagactgcatctcta 6119
Query: 571 cctctgcccggggatacatgggagcccgtggaggaca 607
||||||||| || ||| ||||||||| |||| ||||
Sbjct: 6118 cctctgcccaggaatatgtgggagcccatggaagaca 6082
>gb|GL896338.2| Sus scrofa unplaced genomic scaffold ChrUScaf4222
Length = 75189
Score = 274 bits (138), Expect = 7e-71
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 2 ggacgccggaaatggctctccgcccctgtcagtgggccatggagactgtggcacagtagc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47160 ggacgccggaaatggctctccgcccctgtcagtgggccatggagactgtggcacagtagc 47101
Query: 62 gtctgagtagtgaggattgcgaggccgacggccatggaggccgtgctgaacgagttggtg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47100 gtctgagtagtgaggattgcgaggccgacggccatggaggccgtgctgaacgagttggtg 47041
Query: 122 tctgtggaggatctgctg 139
||||||||||||||||||
Sbjct: 47040 tctgtggaggatctgctg 47023
Score = 266 bits (134), Expect = 2e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 139 gaaatttgaaaggaaatttcagtctgagaaggcagcaggctcggtgtccaagagcacgca 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45950 gaaatttgaaaggaaatttcagtctgagaaggcagcaggctcggtgtccaagagcacgca 45891
Query: 199 gtttgaatatgcctggtgtctggtgcgaagcaagtacaacgatgacatccgtaaaggcct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45890 gtttgaatatgcctggtgtctggtgcgaagcaagtacaacgatgacatccgtaaaggcct 45831
Query: 259 tgctctgctggagg 272
||||||||||||||
Sbjct: 45830 tgctctgctggagg 45817
Score = 214 bits (108), Expect = 5e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 348 aggaatatgaaaaggccctaaagtatgtgcgcgggctgctgcagacagagccacagaaca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44029 aggaatatgaaaaggccctaaagtatgtgcgcgggctgctgcagacagagccacagaaca 43970
Query: 408 accaggccaaggaactggaagggctcattgacaaggccatgaagaaag 455
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43969 accaggccaaggaactggaagggctcattgacaaggccatgaagaaag 43922
Score = 157 bits (79), Expect = 1e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 272 gagctgctacccaaagggagcaaagaggagcagcgggattatgtcttctacctggccgtg 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44489 gagctgctacccaaagggagcaaagaggagcagcgggattatgtcttctacctggccgtg 44430
Query: 332 gggaactaccggctcaagg 350
|||||||||||||||||||
Sbjct: 44429 gggaactaccggctcaagg 44411
>gb|GL894574.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3225
Length = 83014
Score = 242 bits (122), Expect = 2e-61
Identities = 128/130 (98%)
Strand = Plus / Minus
Query: 504 ccggactggctggactcattggacttgctgtatccaagtccaaatcctgaacgagactgc 563
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82630 ccggactggcttgtctcattggacttgctgtatccaagtccaaatcctgaacgagactgc 82571
Query: 564 atctccgcctctgcccggggatacatgggagcccgtggaggacactggagagacccctcc 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82570 atctccgcctctgcccggggatacatgggagcccgtggaggacactggagagacccctcc 82511
Query: 624 tgacccccgt 633
||||||||||
Sbjct: 82510 tgacccccgt 82501
Score = 165 bits (83), Expect = 4e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 671 cttcagtccctccccccgagacctgtcctctagccccaaatcatgtgctgtgggacaagt 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82400 cttcagtccctccccccgagacctgtcctctagccccaaatcatgtgctgtgggacaagt 82341
Query: 731 gtaaataaactgggctttggctt 753
|||||||||||||||||||||||
Sbjct: 82340 gtaaataaactgggctttggctt 82318
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,296,486
Number of extensions: 508
Number of successful extensions: 508
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 503
Number of HSP's successfully gapped: 9
Length of query: 779
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 758
Effective length of database: 2,808,413,156
Effective search space: 2128777172248
Effective search space used: 2128777172248
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)