Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003469
(1224 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001096021.1| protein KHNYN [Bos taurus]. 571 e-163
Alignment gi|NP_001179388.1| protein NYNRIN [Bos taurus]. 203 2e-52
Alignment gi|XP_002690580.1| PREDICTED: NYN domain and retroviral integra... 155 7e-38
Alignment gi|NP_001178362.1| NEDD4 binding protein 1 [Bos taurus]. 120 2e-27
Alignment gi|XP_002694924.1| PREDICTED: NEDD4 binding protein 1, partial ... 119 7e-27
>ref|NP_001096021.1| protein KHNYN [Bos taurus].
Length = 676
Score = 571 bits (1472), Expect = e-163
Identities = 287/350 (82%), Positives = 301/350 (86%), Gaps = 10/350 (2%)
Frame = +2
Query: 203 MPTWGAGSSSPDRFAVSAEAEDKVREQQPHVERIFRVGMSVLPKDCPENPHIWLQLEGPK 382
MPTWGAGS SPDRFAVSAEAEDKVREQ P VERIFRVGMSVLPKDCPENPHIWLQLEGPK
Sbjct: 1 MPTWGAGSPSPDRFAVSAEAEDKVREQLPRVERIFRVGMSVLPKDCPENPHIWLQLEGPK 60
Query: 383 ENASRAKEYLKGLCNPELQNEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPGAPGSLM 562
ENASRAKEYLKGLC+PELQNEIHYPPKLHCIFLGAQGFFLDCL WSTSAHLVPG PGSLM
Sbjct: 61 ENASRAKEYLKGLCSPELQNEIHYPPKLHCIFLGAQGFFLDCLTWSTSAHLVPGVPGSLM 120
Query: 563 VSGLTEAFVMVQSRVEELVERLSWEFLPGPSPGASQCAGVLRDFSALLQSRVDAYTEALL 742
VSGLTEAFVMVQSRVEELVERLSW+F GPSPGASQCAGVLR+FSALLQ+R DA+TEALL
Sbjct: 121 VSGLTEAFVMVQSRVEELVERLSWDFRLGPSPGASQCAGVLREFSALLQARGDAHTEALL 180
Query: 743 QLPLAIQEELLSLVQEASRGQGPQAFPSWEQGSPG----LHQEVRTPLSEGRESLDTGPT 910
QLP A+QEELLSLVQEASRGQGPQAFPSW G PG Q VRTPL +G SLDTGPT
Sbjct: 181 QLPQAVQEELLSLVQEASRGQGPQAFPSWGWGGPGPLGAQQQGVRTPLGDGGVSLDTGPT 240
Query: 911 GWRESRDERHALEKEREKQGAPREMDLGWKELPREETWERQGAF------GSQIGGGEAG 1072
GW+ESR ERHA+EKE KQG REMDLGWKE P EE WERQ AF G GGGEAG
Sbjct: 241 GWQESRGERHAVEKEGTKQGGAREMDLGWKEWPGEEAWERQVAFRPQSGGGEASGGGEAG 300
Query: 1073 QAAPLKGKALGEEGVPQEKGRFWVQGEPPGAQGPCQKAAQPRGASPLQRL 1222
QA P KGKALG+EGVPQE+GR VQG+PP QGP Q+A+Q RGAS LQRL
Sbjct: 301 QAGPPKGKALGKEGVPQERGRLGVQGQPPSTQGPYQRASQLRGASLLQRL 350
>ref|NP_001179388.1| protein NYNRIN [Bos taurus].
Length = 1886
Score = 203 bits (517), Expect = 2e-52
Identities = 106/194 (54%), Positives = 133/194 (68%)
Frame = +2
Query: 215 GAGSSSPDRFAVSAEAEDKVREQQPHVERIFRVGMSVLPKDCPENPHIWLQLEGPKENAS 394
G + + F V +++ +V+ Q+ V+RIFRV ++ + P+ P+ WLQLEGP+EN
Sbjct: 5 GGDPPAQEWFMVQTKSKPRVQRQRQQVQRIFRVKLNAF-QSRPDTPYFWLQLEGPRENMG 63
Query: 395 RAKEYLKGLCNPELQNEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPGAPGSLMVSGL 574
+AKEYLKGLCNPEL E+ YP LHC FLGAQG FLDCL WST A+LVPG PGSLMV GL
Sbjct: 64 KAKEYLKGLCNPELWKEVRYPAALHCAFLGAQGLFLDCLCWSTLAYLVPGPPGSLMVGGL 123
Query: 575 TEAFVMVQSRVEELVERLSWEFLPGPSPGASQCAGVLRDFSALLQSRVDAYTEALLQLPL 754
TE+FVM Q+ +EELV RL W P +P A V R F AL+ R D Y LLQLP
Sbjct: 124 TESFVMTQNWLEELVGRLRWGPAPLLTPRGIWEAEVTRAFGALVWIRGDQYAGDLLQLPP 183
Query: 755 AIQEELLSLVQEAS 796
A+QE LLSLV++A+
Sbjct: 184 AVQELLLSLVRDAA 197
>ref|XP_002690580.1| PREDICTED: NYN domain and retroviral integrase containing [Bos
taurus].
Length = 1827
Score = 155 bits (392), Expect = 7e-38
Identities = 82/131 (62%), Positives = 93/131 (70%)
Frame = +2
Query: 404 EYLKGLCNPELQNEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPGAPGSLMVSGLTEA 583
EYLKGLCNPEL E+ YP LHC FLGAQG FLDCL WST A+LVPG PGSLMV GLTE+
Sbjct: 8 EYLKGLCNPELWKEVRYPAALHCAFLGAQGLFLDCLCWSTLAYLVPGPPGSLMVGGLTES 67
Query: 584 FVMVQSRVEELVERLSWEFLPGPSPGASQCAGVLRDFSALLQSRVDAYTEALLQLPLAIQ 763
FVM Q+ +EELV RL W P +P A V R F AL+ R D Y LLQLP A+Q
Sbjct: 68 FVMTQNWLEELVGRLRWGPAPLLTPRGIWEAEVTRAFGALVWIRGDQYAGDLLQLPPAVQ 127
Query: 764 EELLSLVQEAS 796
E LLSLV++A+
Sbjct: 128 ELLLSLVRDAA 138
>ref|NP_001178362.1| NEDD4 binding protein 1 [Bos taurus].
Length = 897
Score = 120 bits (301), Expect = 2e-27
Identities = 86/250 (34%), Positives = 120/250 (48%), Gaps = 3/250 (1%)
Frame = +2
Query: 236 DRFAVSAEAEDKVREQQPHVERIFRVGMSVLPKDCPENP---HIWLQLEGPKENASRAKE 406
D F AE + + +E +F V ++VL E P IWLQL G +E AKE
Sbjct: 8 DEFTAPAEKAALLERSRGRIEGLFGVSLAVLGALGAEEPLPARIWLQLRGAQEAVHSAKE 67
Query: 407 YLKGLCNPELQNEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPGAPGSLMVSGLTEAF 586
Y+KG+C PEL+ YP +HCIF+GAQ FL L T A L G L + G EA
Sbjct: 68 YIKGICEPELEERECYPKAMHCIFVGAQSLFLKSLIQDTCADLCILDIGLLGIRGSAEAV 127
Query: 587 VMVQSRVEELVERLSWEFLPGPSPGASQCAGVLRDFSALLQSRVDAYTEALLQLPLAIQE 766
VM +S +++ V+ P + + + V R+F +++R D+YT LL LP ++++
Sbjct: 128 VMARSHIQQFVKLFENN---ENLPNSQKESEVKREFKQFVEARADSYTMDLLILPTSLKK 184
Query: 767 ELLSLVQEASRGQGPQAFPSWEQGSPGLHQEVRTPLSEGRESLDTGPTGWRESRDERHAL 946
ELL+L Q +E G + E+R S E TG SRDE
Sbjct: 185 ELLALTQGEEN--------LFETGDDDV-VEIRD--SAQAEFTQNAATGLTISRDEIVLQ 233
Query: 947 EKEREKQGAP 976
E R K G P
Sbjct: 234 EDARNKAGTP 243
>ref|XP_002694924.1| PREDICTED: NEDD4 binding protein 1, partial [Bos taurus].
Length = 894
Score = 119 bits (297), Expect = 7e-27
Identities = 85/250 (34%), Positives = 121/250 (48%), Gaps = 3/250 (1%)
Frame = +2
Query: 236 DRFAVSAEAEDKVREQQPHVERIFRVGMSVLPKDCPENP---HIWLQLEGPKENASRAKE 406
D F V A+ + + ++ +F V ++VL E P IWLQL G +E AKE
Sbjct: 5 DEFTVPADKAALLERSRGRIQGLFGVRLAVLGALGSEEPLPARIWLQLRGTQEAVHSAKE 64
Query: 407 YLKGLCNPELQNEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPGAPGSLMVSGLTEAF 586
Y+KG+C PEL+ YP +HCIF+GAQ FL L T A L G L + G EA
Sbjct: 65 YIKGICEPELEERECYPKAMHCIFVGAQSLFLKSLIQDTCADLCILDIGLLGIRGSAEAV 124
Query: 587 VMVQSRVEELVERLSWEFLPGPSPGASQCAGVLRDFSALLQSRVDAYTEALLQLPLAIQE 766
VM +S +++ V+ P + + + V R+F +++R D+YT LL LP ++++
Sbjct: 125 VMARSHIQQFVKLFENN---ENLPNSQKESEVKREFKQFVEARADSYTMDLLILPTSLKK 181
Query: 767 ELLSLVQEASRGQGPQAFPSWEQGSPGLHQEVRTPLSEGRESLDTGPTGWRESRDERHAL 946
ELL+L Q +E G + E+R S E TG SRDE
Sbjct: 182 ELLALTQGEEN--------LFETGDDDV-VEIRD--SAQAEFTQNAATGLTISRDEIVLQ 230
Query: 947 EKEREKQGAP 976
E R K G P
Sbjct: 231 EDARNKAGTP 240
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,506,549
Number of extensions: 1808790
Number of successful extensions: 10869
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 10761
Number of HSP's successfully gapped: 5
Length of query: 408
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 303
Effective length of database: 14,207,134
Effective search space: 4304761602
Effective search space used: 4304761602
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003469
(1224 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547747.2| PREDICTED: similar to CG10889-PA [Canis familia... 348 8e-96
Alignment gi|XP_535311.2| PREDICTED: similar to Nedd4-binding protein 1 (... 91 2e-18
>ref|XP_547747.2| PREDICTED: similar to CG10889-PA [Canis familiaris].
Length = 2446
Score = 348 bits (892), Expect = 8e-96
Identities = 170/193 (88%), Positives = 180/193 (93%)
Frame = +2
Query: 203 MPTWGAGSSSPDRFAVSAEAEDKVREQQPHVERIFRVGMSVLPKDCPENPHIWLQLEGPK 382
MPTWGAGS SPDRFAVSAEAEDKVREQQ +VERIFRVGMSVLPKDCPENPHIWLQLEGPK
Sbjct: 1991 MPTWGAGSPSPDRFAVSAEAEDKVREQQHYVERIFRVGMSVLPKDCPENPHIWLQLEGPK 2050
Query: 383 ENASRAKEYLKGLCNPELQNEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPGAPGSLM 562
ENASRAKE+LKGLC+PELQ+E+HYPPKLHCIFLGAQGFFLDCL WST+AHLVPG PGSLM
Sbjct: 2051 ENASRAKEFLKGLCSPELQDEVHYPPKLHCIFLGAQGFFLDCLVWSTTAHLVPGPPGSLM 2110
Query: 563 VSGLTEAFVMVQSRVEELVERLSWEFLPGPSPGASQCAGVLRDFSALLQSRVDAYTEALL 742
VSGLTEAFVM QSRVEELVERLSW+F PG +PGASQ AGVLRDFSALLQ DA+ EALL
Sbjct: 2111 VSGLTEAFVMAQSRVEELVERLSWDFRPGRAPGASQGAGVLRDFSALLQPCGDAHREALL 2170
Query: 743 QLPLAIQEELLSL 781
QLP A+QEELLSL
Sbjct: 2171 QLPPAVQEELLSL 2183
Score = 200 bits (508), Expect = 3e-51
Identities = 105/194 (54%), Positives = 133/194 (68%)
Frame = +2
Query: 215 GAGSSSPDRFAVSAEAEDKVREQQPHVERIFRVGMSVLPKDCPENPHIWLQLEGPKENAS 394
G + + F V +++ +V+ Q+ V+RIFRV ++ + P+ P+ WLQLEGPKEN S
Sbjct: 5 GGDPPAQEWFMVQTKSKPRVQRQRLQVQRIFRVKLNAF-QSRPDTPYFWLQLEGPKENMS 63
Query: 395 RAKEYLKGLCNPELQNEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPGAPGSLMVSGL 574
+AKEYLKGLC+PEL E+ YP LHC FLGAQG FLDCL WST A+LVPG PGSLMV GL
Sbjct: 64 KAKEYLKGLCSPELWKEVRYPQALHCAFLGAQGLFLDCLCWSTLAYLVPGPPGSLMVGGL 123
Query: 575 TEAFVMVQSRVEELVERLSWEFLPGPSPGASQCAGVLRDFSALLQSRVDAYTEALLQLPL 754
TE+F+M Q+ +EELV RL W +P A V R F AL+ R D Y LLQLP
Sbjct: 124 TESFIMTQNWLEELVGRLRWGPAALLTPRGIWEAEVTRAFGALVWIRGDQYAGDLLQLPP 183
Query: 755 AIQEELLSLVQEAS 796
A+QE LLSLV++A+
Sbjct: 184 AVQELLLSLVRDAA 197
>ref|XP_535311.2| PREDICTED: similar to Nedd4-binding protein 1 (N4BP1) [Canis
familiaris].
Length = 884
Score = 91.3 bits (225), Expect = 2e-18
Identities = 67/193 (34%), Positives = 93/193 (48%)
Frame = +2
Query: 398 AKEYLKGLCNPELQNEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPGAPGSLMVSGLT 577
A EY+KG+C PEL+ YP +HCIF+GAQ FL L T A L G L + G
Sbjct: 53 AGEYIKGICEPELEERECYPKAMHCIFVGAQSLFLKSLIQDTCADLCILDIGLLGIRGSA 112
Query: 578 EAFVMVQSRVEELVERLSWEFLPGPSPGASQCAGVLRDFSALLQSRVDAYTEALLQLPLA 757
EA VM +S +++ V+ P + + + V R+F +++R D YT LL LP +
Sbjct: 113 EAVVMARSHIQQFVKLFENN---ENLPNSQKESEVKREFKQFVEARADNYTMDLLILPTS 169
Query: 758 IQEELLSLVQEASRGQGPQAFPSWEQGSPGLHQEVRTPLSEGRESLDTGPTGWRESRDER 937
+++ELL+L Q +E G + EVR S+ E TG RDE
Sbjct: 170 LKKELLTLTQGEEN--------LFETGDDDV-IEVRD--SKQTEFAQNAATGLNIFRDEI 218
Query: 938 HALEKEREKQGAP 976
E R K G P
Sbjct: 219 VLQEDARNKAGTP 231
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,653,080
Number of extensions: 1853379
Number of successful extensions: 10968
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 10843
Number of HSP's successfully gapped: 3
Length of query: 408
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 303
Effective length of database: 15,374,224
Effective search space: 4658389872
Effective search space used: 4658389872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003469
(1224 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056114.1| protein KHNYN [Homo sapiens]. 508 e-144
Alignment gi|NP_079357.2| protein NYNRIN [Homo sapiens]. 201 1e-51
Alignment gi|NP_694574.3| NEDD4-binding protein 1 [Homo sapiens]. 119 4e-27
>ref|NP_056114.1| protein KHNYN [Homo sapiens].
Length = 678
Score = 508 bits (1307), Expect = e-144
Identities = 261/347 (75%), Positives = 282/347 (81%), Gaps = 7/347 (2%)
Frame = +2
Query: 203 MPTWGAGSSSPDRFAVSAEAEDKVREQQPHVERIFRVGMSVLPKDCPENPHIWLQLEGPK 382
MPTWGA +SPDRFAVSAEAE+KVREQQPHVERIF VG+SVLPKDCP+NPHIWLQLEGPK
Sbjct: 1 MPTWGARPASPDRFAVSAEAENKVREQQPHVERIFSVGVSVLPKDCPDNPHIWLQLEGPK 60
Query: 383 ENASRAKEYLKGLCNPELQNEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPGAPGSLM 562
ENASRAKEYLKGLC+PELQ+EIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVP APGSLM
Sbjct: 61 ENASRAKEYLKGLCSPELQDEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPRAPGSLM 120
Query: 563 VSGLTEAFVMVQSRVEELVERLSWEFLPGPSPGASQCAGVLRDFSALLQSRVDAYTEALL 742
+SGLTEAFVM QSRVEEL ERLSW+F PGPS GASQC GVLRDFSALLQS DA+ EALL
Sbjct: 121 ISGLTEAFVMAQSRVEELAERLSWDFTPGPSSGASQCTGVLRDFSALLQSPGDAHREALL 180
Query: 743 QLPLAIQEELLSLVQEASRGQGPQAFPSWEQGSPGL----HQEVRTPLSEGRESLDT--- 901
QLPLA+QEELLSLVQEAS GQGP A SWE S L Q VR P S+GRESLDT
Sbjct: 181 QLPLAVQEELLSLVQEASSGQGPGALASWEGRSSALLGAQCQGVRAPPSDGRESLDTGSM 240
Query: 902 GPTGWRESRDERHALEKEREKQGAPREMDLGWKELPREETWERQGAFGSQIGGGEAGQAA 1081
GP R +R + +A+EKE KQG PREMD GWKELP EE WER+ A Q GG A ++A
Sbjct: 241 GPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEAWEREVALRPQSVGGGARESA 300
Query: 1082 PLKGKALGEEGVPQEKGRFWVQGEPPGAQGPCQKAAQPRGASPLQRL 1222
PLKGKALG+E + G F V EPPGA G C +AAQ RGAS LQRL
Sbjct: 301 PLKGKALGKEEIALGGGGFCVHREPPGAHGSCHRAAQSRGASLLQRL 347
>ref|NP_079357.2| protein NYNRIN [Homo sapiens].
Length = 1898
Score = 201 bits (510), Expect = 1e-51
Identities = 104/194 (53%), Positives = 134/194 (69%)
Frame = +2
Query: 215 GAGSSSPDRFAVSAEAEDKVREQQPHVERIFRVGMSVLPKDCPENPHIWLQLEGPKENAS 394
G + + F V +++ +V+ Q+ V+RIFRV ++ + P+ P+ WLQLEGP+EN
Sbjct: 5 GGDPPAQEWFMVQTKSKPRVQRQRLQVQRIFRVKLNAF-QSRPDTPYFWLQLEGPRENMG 63
Query: 395 RAKEYLKGLCNPELQNEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPGAPGSLMVSGL 574
+AKEYLKGLC+PEL E+ YPP LHC FLGAQG FLDCL WST A+LVPG PGSLMV GL
Sbjct: 64 KAKEYLKGLCSPELWKEVRYPPILHCAFLGAQGLFLDCLCWSTLAYLVPGPPGSLMVGGL 123
Query: 575 TEAFVMVQSRVEELVERLSWEFLPGPSPGASQCAGVLRDFSALLQSRVDAYTEALLQLPL 754
TE+F+M Q+ +EELV RL W P +P A V R F AL+ R D + LLQLP
Sbjct: 124 TESFIMTQNWLEELVGRLRWGPAPLLTPRGIWEAEVTRAFGALVWIRGDQHAGDLLQLPP 183
Query: 755 AIQEELLSLVQEAS 796
A+QE LLSLV++A+
Sbjct: 184 AVQELLLSLVRDAA 197
>ref|NP_694574.3| NEDD4-binding protein 1 [Homo sapiens].
Length = 896
Score = 119 bits (299), Expect = 4e-27
Identities = 84/255 (32%), Positives = 122/255 (47%), Gaps = 8/255 (3%)
Frame = +2
Query: 236 DRFAVSAEAEDKVREQQPHVERIFRVGMSVLPKDCPENP---HIWLQLEGPKENASRAKE 406
D F AE + + + + +E +F V ++VL E P IWLQL G +E AKE
Sbjct: 8 DEFTAPAEKAELLEQSRGRIEGLFGVSLAVLGALGAEEPLPARIWLQLCGAQEAVHSAKE 67
Query: 407 YLKGLCNPELQNEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPGAPGSLMVSGLTEAF 586
Y+KG+C PEL+ YP +HCIF+GA+ FL L T A L G L + G EA
Sbjct: 68 YIKGICEPELEERECYPKDMHCIFVGAESLFLKSLIQDTCADLCILDIGLLGIRGSAEAV 127
Query: 587 VMVQSRVEELVERLSWEFLPGPSPGASQCAGVLRDFSALLQSRVDAYTEALLQLPLAIQE 766
VM +S +++ V+ + P + + + V R+F +++ D YT LL LP ++++
Sbjct: 128 VMARSHIQQFVKLFENK---ENLPSSQKESEVKREFKQFVEAHADNYTMDLLILPTSLKK 184
Query: 767 ELLSLVQEASRGQGPQAFPSWEQGSPGLHQEVRTPLSEGRESLDT-----GPTGWRESRD 931
ELL+L QG L + + E R+S T TG SRD
Sbjct: 185 ELLTLT----------------QGEENLFETGDDEVIEMRDSQQTEFTQNAATGLNISRD 228
Query: 932 ERHALEKEREKQGAP 976
E E+ R K G P
Sbjct: 229 ETVLQEEARNKAGTP 243
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,297,723
Number of extensions: 1791735
Number of successful extensions: 10533
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10412
Number of HSP's successfully gapped: 3
Length of query: 408
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 303
Effective length of database: 14,835,944
Effective search space: 4495291032
Effective search space used: 4495291032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003469
(1224 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081419.1| protein KHNYN [Mus musculus]. 455 e-128
Alignment gi|NP_001035161.1| protein NYNRIN [Mus musculus]. 203 3e-52
Alignment gi|NP_085040.2| NEDD4-binding protein 1 [Mus musculus]. 120 2e-27
>ref|NP_081419.1| protein KHNYN [Mus musculus].
Length = 671
Score = 455 bits (1171), Expect = e-128
Identities = 242/347 (69%), Positives = 267/347 (76%), Gaps = 7/347 (2%)
Frame = +2
Query: 203 MPTWGAGSSSPDRFAVSAEAEDKVREQQPHVERIFRVGMSVLPKDCPENPHIWLQLEGPK 382
M TWG S +PDRFAVSAEAEDKVREQQ +ERIF VGMSVL KDCPENPHIWLQLEGPK
Sbjct: 1 MSTWGFASPTPDRFAVSAEAEDKVREQQTRLERIFNVGMSVLSKDCPENPHIWLQLEGPK 60
Query: 383 ENASRAKEYLKGLCNPELQNEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPGAPGSLM 562
EN RAKEYLKGLC+PELQ+EIHYPP+LHCIFLGA GFFLDCLAWSTSAHLVP PGSLM
Sbjct: 61 ENVCRAKEYLKGLCSPELQSEIHYPPRLHCIFLGAHGFFLDCLAWSTSAHLVPLLPGSLM 120
Query: 563 VSGLTEAFVMVQSRVEELVERLSWEFLPGPSPGASQCAGVLRDFSALLQSRVDAYTEALL 742
+SGLTEAFVM QSRVEELV+RLSW+ PGA GVLRDFSALLQ+R DAYTEALL
Sbjct: 121 ISGLTEAFVMAQSRVEELVQRLSWDLQLQSCPGAPDNGGVLRDFSALLQTREDAYTEALL 180
Query: 743 QLPLAIQEELLSLVQEASRGQGPQAFPSWEQGSPGL----HQEVRTPLSEGRESLDTGPT 910
+LPLA+QEELLSLVQEASRGQG PS E GS GL Q VR PL+EGRE + T
Sbjct: 181 RLPLAVQEELLSLVQEASRGQG----PSREVGSSGLLSPQFQGVRAPLNEGREFVGTRVA 236
Query: 911 GWRES---RDERHALEKEREKQGAPREMDLGWKELPREETWERQGAFGSQIGGGEAGQAA 1081
G +S R + H +EKE KQ A R+M G KEL EE WE A+ SQ+ GG A + A
Sbjct: 237 GSGKSPAVRGQSHTVEKEERKQDAVRDMGSGRKELSGEEVWEPGVAYRSQLAGGGAEEVA 296
Query: 1082 PLKGKALGEEGVPQEKGRFWVQGEPPGAQGPCQKAAQPRGASPLQRL 1222
PLKGKA G++ VPQ++G F VQGEP GA PCQ+AA RGAS LQRL
Sbjct: 297 PLKGKASGKQEVPQQRGGFSVQGEPSGAHVPCQRAAPIRGASLLQRL 343
>ref|NP_001035161.1| protein NYNRIN [Mus musculus].
Length = 1840
Score = 203 bits (516), Expect = 3e-52
Identities = 105/194 (54%), Positives = 131/194 (67%)
Frame = +2
Query: 215 GAGSSSPDRFAVSAEAEDKVREQQPHVERIFRVGMSVLPKDCPENPHIWLQLEGPKENAS 394
G + + F V +++ +V Q+ V+RIFRV ++ + P+ P+ WLQLEGP+EN
Sbjct: 5 GGKPPAQEWFMVQTKSKPRVHRQRLQVQRIFRVKVTAF-QSRPDTPYFWLQLEGPRENTG 63
Query: 395 RAKEYLKGLCNPELQNEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPGAPGSLMVSGL 574
+AKEYLKGLCNPEL E+ YPP LHC FLGAQG FLDCL WST A+LVPG PGSLMV GL
Sbjct: 64 KAKEYLKGLCNPELWKEVRYPPVLHCAFLGAQGLFLDCLCWSTLAYLVPGPPGSLMVGGL 123
Query: 575 TEAFVMVQSRVEELVERLSWEFLPGPSPGASQCAGVLRDFSALLQSRVDAYTEALLQLPL 754
TE+F M Q+ +EELV RL W P +P V R F AL+ R D Y LLQLP
Sbjct: 124 TESFTMTQNWLEELVARLRWGPAPMITPRGVWETEVTRAFGALVWIRCDKYAGDLLQLPP 183
Query: 755 AIQEELLSLVQEAS 796
A+QE LLSLV++A+
Sbjct: 184 AVQELLLSLVRDAA 197
>ref|NP_085040.2| NEDD4-binding protein 1 [Mus musculus].
Length = 893
Score = 120 bits (302), Expect = 2e-27
Identities = 88/251 (35%), Positives = 126/251 (50%), Gaps = 4/251 (1%)
Frame = +2
Query: 236 DRFAVSAEAEDKVREQQPHVERIFRVGMSVLPKDCPENP---HIWLQLEGPKENASRAKE 406
D F AE + + +E +F VG++VL E P IWLQL G +E AKE
Sbjct: 8 DEFTAPAEKAALLERSRGRIEALFGVGLAVLGALGAEEPLPARIWLQLRGAQEAVHSAKE 67
Query: 407 YLKGLCNPELQNEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPGAPGSLMVSGLTEAF 586
Y+KG+C PEL+ + YP +HCIF+GAQ FL L T A L G L + G EA
Sbjct: 68 YIKGICEPELEEKECYPKAMHCIFVGAQSLFLKSLIQDTCADLCVLDTGLLGIRGSAEAV 127
Query: 587 VMVQSRVEELVERL-SWEFLPGPSPGASQCAGVLRDFSALLQSRVDAYTEALLQLPLAIQ 763
VM +S +++ V+ S E LP + + R+F +++ D+YT LL LP +++
Sbjct: 128 VMARSHIQQFVKLFESNENLPSNQRESE----IKREFRQFVEAHADSYTMDLLILPTSLK 183
Query: 764 EELLSLVQEASRGQGPQAFPSWEQGSPGLHQEVRTPLSEGRESLDTGPTGWRESRDERHA 943
+ELLSL QG ++ + + +VR P E +S TGP+ +RDE
Sbjct: 184 KELLSLT------QGEESLFETDDDVITV-GDVRPP--EYTQSAATGPS---SARDEVVV 231
Query: 944 LEKEREKQGAP 976
E R K P
Sbjct: 232 QEDSRNKARTP 242
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,300,483
Number of extensions: 1453841
Number of successful extensions: 8089
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7962
Number of HSP's successfully gapped: 3
Length of query: 408
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 304
Effective length of database: 12,493,815
Effective search space: 3798119760
Effective search space used: 3798119760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003469
(1224 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927174.3| PREDICTED: protein KHNYN [Sus scrofa]. 694 0.0
Alignment gi|XP_003127038.2| PREDICTED: NEDD4-binding protein 1-like [Sus... 120 1e-27
Alignment gi|XP_003355868.1| PREDICTED: NEDD4-binding protein 1-like [Sus... 94 1e-19
>ref|XP_001927174.3| PREDICTED: protein KHNYN [Sus scrofa].
Length = 663
Score = 694 bits (1791), Expect = 0.0
Identities = 337/340 (99%), Positives = 338/340 (99%)
Frame = +2
Query: 203 MPTWGAGSSSPDRFAVSAEAEDKVREQQPHVERIFRVGMSVLPKDCPENPHIWLQLEGPK 382
MPTWGAGSSSPDRFAVSAEAEDKVREQQPHVERIFRVGMSVLPKDCPENPHIWLQLEGPK
Sbjct: 1 MPTWGAGSSSPDRFAVSAEAEDKVREQQPHVERIFRVGMSVLPKDCPENPHIWLQLEGPK 60
Query: 383 ENASRAKEYLKGLCNPELQNEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPGAPGSLM 562
ENASRAKEYLKGLCNPELQNEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPGAPGSLM
Sbjct: 61 ENASRAKEYLKGLCNPELQNEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPGAPGSLM 120
Query: 563 VSGLTEAFVMVQSRVEELVERLSWEFLPGPSPGASQCAGVLRDFSALLQSRVDAYTEALL 742
VSGLTEAFVMVQSRVEELVERLSWEFLPGPSPGASQCAGVLRDFSALLQSRVDAYTEALL
Sbjct: 121 VSGLTEAFVMVQSRVEELVERLSWEFLPGPSPGASQCAGVLRDFSALLQSRVDAYTEALL 180
Query: 743 QLPLAIQEELLSLVQEASRGQGPQAFPSWEQGSPGLHQEVRTPLSEGRESLDTGPTGWRE 922
QLPLAIQEELLSLVQEASRGQGPQAFPSWEQGSPGLHQEVRTPLSEGRESLDTGPTGWRE
Sbjct: 181 QLPLAIQEELLSLVQEASRGQGPQAFPSWEQGSPGLHQEVRTPLSEGRESLDTGPTGWRE 240
Query: 923 SRDERHALEKEREKQGAPREMDLGWKELPREETWERQGAFGSQIGGGEAGQAAPLKGKAL 1102
SRDERHALEKEREKQGAPRE DLGWKELPREETWERQGAFGSQIGGGEAGQAAPLKGKAL
Sbjct: 241 SRDERHALEKEREKQGAPRETDLGWKELPREETWERQGAFGSQIGGGEAGQAAPLKGKAL 300
Query: 1103 GEEGVPQEKGRFWVQGEPPGAQGPCQKAAQPRGASPLQRL 1222
G+EGVPQEKGRFWVQGEPPGAQGPCQKAAQPRGAS LQRL
Sbjct: 301 GKEGVPQEKGRFWVQGEPPGAQGPCQKAAQPRGASLLQRL 340
>ref|XP_003127038.2| PREDICTED: NEDD4-binding protein 1-like [Sus scrofa].
Length = 897
Score = 120 bits (302), Expect = 1e-27
Identities = 86/250 (34%), Positives = 122/250 (48%), Gaps = 3/250 (1%)
Frame = +2
Query: 236 DRFAVSAEAEDKVREQQPHVERIFRVGMSVLPKDCPENP---HIWLQLEGPKENASRAKE 406
D F AE + + +E +F V ++VL E P IWLQL G +E AKE
Sbjct: 8 DEFTAPAEKAALLERSRGRIEGLFGVSLAVLGALGAEEPLPARIWLQLLGAQEAVHSAKE 67
Query: 407 YLKGLCNPELQNEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPGAPGSLMVSGLTEAF 586
Y+KG+C PEL+ YP +HCIF+GAQ FL L T A L G L + G EA
Sbjct: 68 YIKGICEPELEERECYPKAMHCIFVGAQSLFLKSLIQDTCADLCILDIGLLGIRGSAEAV 127
Query: 587 VMVQSRVEELVERLSWEFLPGPSPGASQCAGVLRDFSALLQSRVDAYTEALLQLPLAIQE 766
VM +S +++ V+ P + + + V R+F +++R D+YT LL LP ++++
Sbjct: 128 VMARSHIQQFVKLFENN---ENLPNSQKESEVKREFKQFVEARADSYTMDLLILPTSLKK 184
Query: 767 ELLSLVQEASRGQGPQAFPSWEQGSPGLHQEVRTPLSEGRESLDTGPTGWRESRDERHAL 946
ELL+L Q +E G + E+R S+ RE + G SRDE
Sbjct: 185 ELLALTQGEEN--------LFETGDNDV-VEIRD--SKQREFTQSAAAGLNISRDEIVLQ 233
Query: 947 EKEREKQGAP 976
E R K G P
Sbjct: 234 EDARNKAGTP 243
>ref|XP_003355868.1| PREDICTED: NEDD4-binding protein 1-like [Sus scrofa].
Length = 703
Score = 94.4 bits (233), Expect = 1e-19
Identities = 66/191 (34%), Positives = 95/191 (49%)
Frame = +2
Query: 404 EYLKGLCNPELQNEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPGAPGSLMVSGLTEA 583
EY+KG+C PEL+ YP +HCIF+GAQ FL L T A L G L + G EA
Sbjct: 27 EYIKGICEPELEERECYPKAMHCIFVGAQSLFLKSLIQDTCADLCILDIGLLGIRGSAEA 86
Query: 584 FVMVQSRVEELVERLSWEFLPGPSPGASQCAGVLRDFSALLQSRVDAYTEALLQLPLAIQ 763
VM +S +++ V+ P + + + V R+F +++R D+YT LL LP +++
Sbjct: 87 VVMARSHIQQFVKLFENN---ENLPNSQKESEVKREFKQFVEARADSYTMDLLILPTSLK 143
Query: 764 EELLSLVQEASRGQGPQAFPSWEQGSPGLHQEVRTPLSEGRESLDTGPTGWRESRDERHA 943
+ELL+L Q +E G + E+R S+ RE + G SRDE
Sbjct: 144 KELLALTQGEEN--------LFETGDNDV-VEIRD--SKQREFTQSAAAGLNISRDEIVL 192
Query: 944 LEKEREKQGAP 976
E R K G P
Sbjct: 193 QEDARNKAGTP 203
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,694,727
Number of extensions: 1176457
Number of successful extensions: 7282
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7168
Number of HSP's successfully gapped: 3
Length of query: 408
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 307
Effective length of database: 8,829,335
Effective search space: 2710605845
Effective search space used: 2710605845
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003469
(1224 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1285 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1285 bits (648), Expect = 0.0
Identities = 651/652 (99%)
Strand = Plus / Minus
Query: 402 aggagtacttgaagggtctctgcaacccggagctgcagaatgaaatccactacccaccca 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80134213 aggagtacttgaagggtctctgcaacccggagctgcagaatgaaatccactacccaccca 80134154
Query: 462 aactgcactgcatcttcctaggagcccagggcttcttccttgattgcctggcctggagca 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80134153 aactgcactgcatcttcctaggagcccagggcttcttccttgattgcctggcctggagca 80134094
Query: 522 catcagcccatctggtgcctggggcacccggttctctgatggtcagtggcctgactgagg 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80134093 catcagcccatctggtgcctggggcacccggttctctgatggtcagtggcctgactgagg 80134034
Query: 582 ccttcgtcatggtccagagccgagtggaggagctggtggagcggttgagctgggagtttc 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80134033 ccttcgtcatggtccagagccgagtggaggagctggtggagcggttgagctgggagtttc 80133974
Query: 642 tgccagggccgtcccctggagcttctcagtgtgctggagttctgagagacttctctgccc 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80133973 tgccagggccgtcccctggagcttctcagtgtgctggagttctgagagacttctctgccc 80133914
Query: 702 tgctgcagtcccgggtggatgcctacacagaggccctgctgcagctgcccctggccatcc 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80133913 tgctgcagtcccgggtggatgcctacacagaggccctgctgcagctgcccctggccatcc 80133854
Query: 762 aggaggaactgctgagcctggtgcaggaggcctccagggggcaggggccccaagcattcc 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80133853 aggaggaactgctgagcctggtgcaggaggcctccagggggcaggggccccaagcattcc 80133794
Query: 822 catcctgggagcagggcagcccaggattgcaccaggaagtcaggactcccctgagtgaag 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80133793 catcctgggagcagggcagcccaggattgcaccaggaagtcaggactcccctgagtgaag 80133734
Query: 882 gcagggagtccctggacacaggcccaacagggtggcgagagtcaagggacgagagacatg 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80133733 gcagggagtccctggacacaggcccaacagggtggcgagagtcaagggacgagagacatg 80133674
Query: 942 ctctggagaaggagagagaaaagcagggtgctcccagggagatggacttggggtggaagg 1001
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 80133673 ctctggagaaggagagagaaaagcagggtgctcccagggagacggacttggggtggaagg 80133614
Query: 1002 agcttcccagggaagagacctgggagagacaaggggcctttgggtcacagat 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80133613 agcttcccagggaagagacctgggagagacaaggggcctttgggtcacagat 80133562
Score = 418 bits (211), Expect = e-114
Identities = 211/211 (100%)
Strand = Plus / Minus
Query: 194 caagcagccatgcctacctggggggctggctcctcgtcccctgaccgctttgccgtgtct 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80135180 caagcagccatgcctacctggggggctggctcctcgtcccctgaccgctttgccgtgtct 80135121
Query: 254 gcggaggccgaggacaaggtgcgggagcaacagccccatgtggaacgcatcttcagggtg 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80135120 gcggaggccgaggacaaggtgcgggagcaacagccccatgtggaacgcatcttcagggtg 80135061
Query: 314 gggatgagcgtcctccccaaggactgtcccgagaaccctcacatctggctgcagctggag 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80135060 gggatgagcgtcctccccaaggactgtcccgagaaccctcacatctggctgcagctggag 80135001
Query: 374 ggccccaaggagaacgccagcagagccaagg 404
|||||||||||||||||||||||||||||||
Sbjct: 80135000 ggccccaaggagaacgccagcagagccaagg 80134970
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 7 aaaaaactgttcgtgatgtggggaagagaggtccccgttgggtgaggaatcggaaaggcc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80136018 aaaaaactgttcgtgatgtggggaagagaggtccccgttgggtgaggaatcggaaaggcc 80135959
Query: 67 cgcccagatttgggcccccagctcttcttccctgggccgggggcgcaggcgaagctgggg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80135958 cgcccagatttgggcccccagctcttcttccctgggccgggggcgcaggcgaagctgggg 80135899
Query: 127 cca 129
|||
Sbjct: 80135898 cca 80135896
Score = 200 bits (101), Expect = 1e-48
Identities = 107/109 (98%)
Strand = Plus / Minus
Query: 1116 tacctcaggaaaagggaaggttctgggtccagggtgagcctcctggtgcccagggcccct 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80133499 tacctcaggaaaagggaaggttctgggtccagggtgagcctcctggtgcccagggcccct 80133440
Query: 1176 gtcagaaggcagctcagcccaggggagcctcccctctccagcggctcca 1224
||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 80133439 gtcagaaggcagctcagcccaggggagcctccctcctccagcggctcca 80133391
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,670,211
Number of extensions: 345
Number of successful extensions: 345
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 4
Length of query: 1224
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1203
Effective length of database: 2,808,413,156
Effective search space: 3378521026668
Effective search space used: 3378521026668
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)