Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003474
(992 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039789.1| estradiol 17-beta-dehydrogenase 8 [Bos tauru... 362 e-100
Alignment gi|NP_001077186.1| carbonyl reductase family member 4 [Bos taur... 108 6e-24
Alignment gi|NP_001069359.1| L-xylulose reductase [Bos taurus]. 83 4e-16
Alignment gi|NP_001068891.1| 2,4-dienoyl-CoA reductase, mitochondrial [Bo... 79 5e-15
Alignment gi|NP_001029660.1| 3-hydroxybutyrate dehydrogenase type 2 [Bos ... 79 8e-15
Alignment gi|NP_776759.1| 3-hydroxyacyl-CoA dehydrogenase type-2 [Bos tau... 79 8e-15
Alignment gi|NP_001007810.1| peroxisomal multifunctional enzyme type 2 [B... 76 4e-14
Alignment gi|NP_777247.1| dehydrogenase/reductase SDR family member 4 [Bo... 75 1e-13
Alignment gi|NP_001193891.1| L-xylulose reductase-like [Bos taurus]. 71 1e-12
Alignment gi|NP_777126.1| 17-beta-hydroxysteroid dehydrogenase 14 [Bos ta... 65 9e-11
>ref|NP_001039789.1| estradiol 17-beta-dehydrogenase 8 [Bos taurus].
Length = 259
Score = 362 bits (930), Expect = e-100
Identities = 191/246 (77%), Positives = 201/246 (81%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQAD 233
VTGAG GIGRA+SVRL +ETVQLLGGPG+E+GAP GAHAAFQAD
Sbjct: 14 VTGAGGGIGRAISVRLAAEGAAVAACDLDGAAARETVQLLGGPGTEEGAPRGAHAAFQAD 73
Query: 234 VSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVT 413
VSEA ARRLLEQVQA F RPPSVVVSCAGITRDEFLL MSED+WDKVIAVNLKGIFLVT
Sbjct: 74 VSEAGAARRLLEQVQACFSRPPSVVVSCAGITRDEFLLHMSEDNWDKVIAVNLKGIFLVT 133
Query: 414 QAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCN 593
QAAAQALV KVGNMGQTNYAASKAGVIGLTQ+ ARELGR+ IRCN
Sbjct: 134 QAAAQALVSSGCPGSIINISSIIGKVGNMGQTNYAASKAGVIGLTQSAARELGRHGIRCN 193
Query: 594 SVLPGFIKTPMAQKVPQKVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVEV 773
SVLPGFI+TPM QKVPQKVLDKV GMIPM H+G+PEDVADVVAFLASEDSGYITGASVEV
Sbjct: 194 SVLPGFIRTPMTQKVPQKVLDKVTGMIPMAHMGNPEDVADVVAFLASEDSGYITGASVEV 253
Query: 774 TGGLFM 791
TGGLFM
Sbjct: 254 TGGLFM 259
>ref|NP_001077186.1| carbonyl reductase family member 4 [Bos taurus].
Length = 237
Score = 108 bits (271), Expect = 6e-24
Identities = 77/244 (31%), Positives = 118/244 (48%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQAD 233
V G GIGRAV+ + + L G + G G H A D
Sbjct: 7 VFGGSRGIGRAVARLMAQRGYRLAI----------VARNLEGARAAAGDLGGDHLALSCD 56
Query: 234 VSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVT 413
V++ + E+++ R + +V+ AGI RD L+R + +D + NL G L
Sbjct: 57 VAKEHDVQNTFEEIEKNLGRV-NFLVNAAGINRDNLLVRTNTEDMLSQLHTNLLGSMLTC 115
Query: 414 QAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCN 593
+AA + ++ K GN GQ+ Y+ASK G++G ++A+A+E+ + +IR N
Sbjct: 116 RAALKTMIKQQRGSIVNVGSVVGLK-GNSGQSVYSASKGGLVGFSRALAKEVAKKKIRVN 174
Query: 594 SVLPGFIKTPMAQKVPQKVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVEV 773
V PGFI T M + + +++L K IP+G GD DVA FL +S Y+TG + V
Sbjct: 175 VVAPGFIHTDMTKDLNEELLKK---NIPLGRFGDALDVAQAAVFLL--ESPYVTGHVLVV 229
Query: 774 TGGL 785
GGL
Sbjct: 230 DGGL 233
>ref|NP_001069359.1| L-xylulose reductase [Bos taurus].
Length = 244
Score = 82.8 bits (203), Expect = 4e-16
Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 3/246 (1%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQAD 233
VTGAG GIGR++ L V+ PG E D
Sbjct: 12 VTGAGKGIGRSIVKALHAAGARVVAVSRTQADLDSLVREC--PGVETVC---------VD 60
Query: 234 VSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVT 413
+++ E + L V P ++V+ A + + L ++++ +D +VNL+ + V+
Sbjct: 61 LADWEATEQALGGVG-----PVDLLVNNAAVAFLQPFLEVTKEAYDMSFSVNLRAVIQVS 115
Query: 414 QAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCN 593
Q A+ L+ + G + Y ++K + LT+ +A ELG ++IR N
Sbjct: 116 QIVARGLIARGAPGVIVNVSSQASQRGLTNHSVYCSTKGALDTLTKVMAVELGPHKIRVN 175
Query: 594 SVLPGFIKTPMAQKV---PQKVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGAS 764
+V P + TPM Q PQK ++ IP+G + E+V D + FL S+ S TG++
Sbjct: 176 AVNPTVVMTPMGQAAWSDPQKA-KAMLDRIPLGRFAEVENVVDTILFLLSDRSSMTTGST 234
Query: 765 VEVTGG 782
V V GG
Sbjct: 235 VPVDGG 240
>ref|NP_001068891.1| 2,4-dienoyl-CoA reductase, mitochondrial [Bos taurus].
Length = 329
Score = 79.3 bits (194), Expect = 5e-15
Identities = 65/248 (26%), Positives = 110/248 (44%), Gaps = 5/248 (2%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQAD 233
+TG G+G+G+ ++ L + T + + K HA Q D
Sbjct: 58 ITGGGTGLGKGMTTCLSSLGAQCVIASRKIDVLKVTAEQISSQTGNK-----VHA-IQCD 111
Query: 234 VSEAETARRLLEQVQAYFFRPPSVVVSCAG--ITRDEFLLRMSEDDWDKVIAVNLKGIFL 407
V + + + + + P V+ + AG I+ E R+S + W + + L G
Sbjct: 112 VRDPDMVQNAVSETIKVIGHPDIVINNAAGNFISPSE---RLSPNAWKTITDIVLNGTAF 168
Query: 408 VTQAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIR 587
VT A + L+ + G+ A++KAGV L +++A E G+Y +R
Sbjct: 169 VTLAIGKELIKAQKGASFLAITTIYAETGSGFVVPSASAKAGVEALNKSLAAEWGKYGMR 228
Query: 588 CNSVLPGFIKTPMA--QKVPQKVLDK-VVGMIPMGHLGDPEDVADVVAFLASEDSGYITG 758
N + PG IKT A + P +K ++ IP G LG E++A++ AFL S+ + +I G
Sbjct: 229 FNVIQPGPIKTKGAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLAAFLCSDYASWING 288
Query: 759 ASVEVTGG 782
A + GG
Sbjct: 289 AVIRFDGG 296
>ref|NP_001029660.1| 3-hydroxybutyrate dehydrogenase type 2 [Bos taurus].
Length = 245
Score = 78.6 bits (192), Expect = 8e-15
Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 6/166 (3%)
Frame = +3
Query: 303 VVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVTQAAAQALVXXXXXXXXXXXXXXX 482
V+ + AG +L E DWD + +N++ ++L+ +A ++
Sbjct: 77 VLFNVAGFVHHGTILDCEETDWDFSMNLNVRSMYLMIKAFLPKMMAQKSGNIINMSSVAS 136
Query: 483 XKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCNSVLPGFIKTP------MAQKVPQ 644
G + + Y+ +KA VIGLT++VA + + IRCN V PG + TP A+ P+
Sbjct: 137 SIKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARPNPE 196
Query: 645 KVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVEVTGG 782
+ L + G E+VA + +LAS++S YITG V + GG
Sbjct: 197 EALSDFLKRQKTGRFATAEEVALLCVYLASDESAYITGNPVIIDGG 242
>ref|NP_776759.1| 3-hydroxyacyl-CoA dehydrogenase type-2 [Bos taurus].
Length = 261
Score = 78.6 bits (192), Expect = 8e-15
Identities = 70/259 (27%), Positives = 111/259 (42%), Gaps = 13/259 (5%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQ-A 230
+TG SG+G A + RL + L G + G AF A
Sbjct: 15 ITGGASGLGLATAERLVGQGATAVL-----------LDLPNSDGETQAKKLGKSCAFAPA 63
Query: 231 DVSEAETARRLLEQVQAYFFRPPSVVVSCAGIT--RDEFLLRMSE----DDWDKVIAVNL 392
DV+ + + L + F R V V+CAGI + L+ S+ +D+ +VI VNL
Sbjct: 64 DVTSEKDVQAALTLAREKFGRV-DVAVNCAGIAVASKTYNLKKSQAHTLEDFQRVINVNL 122
Query: 393 KGIFLVTQAAAQALVXXXXXXXXXXXXXXXXKV-----GNMGQTNYAASKAGVIGLTQAV 557
G F V + A + G +GQ Y+ASK G++G+T +
Sbjct: 123 IGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPI 182
Query: 558 ARELGRYRIRCNSVLPGFIKTPMAQKVPQKVLDKVVGMIPM-GHLGDPEDVADVVAFLAS 734
AR+L IR ++ PG TP+ +P KV + + +P LGDP + A +V A
Sbjct: 183 ARDLAPMGIRVMTIAPGLFGTPLLTTLPDKVRNFLASQVPFPSRLGDPAEYAHLVQ--AI 240
Query: 735 EDSGYITGASVEVTGGLFM 791
++ ++ G + + G + M
Sbjct: 241 IENSFLNGEVIRLDGAIRM 259
>ref|NP_001007810.1| peroxisomal multifunctional enzyme type 2 [Bos taurus].
Length = 736
Score = 76.3 bits (186), Expect = 4e-14
Identities = 71/256 (27%), Positives = 109/256 (42%), Gaps = 11/256 (4%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGP--GSEKGAPSGAHAAFQ 227
VTGAG G+GRA ++ V L G G KG+ S +
Sbjct: 14 VTGAGGGLGRAYALAFAERGASV------------VVNDLRGDFTGVGKGSLSADKVVEE 61
Query: 228 ---------ADVSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVI 380
A+ E ++++ F R +V++ AGI RD R+S++DWDK+
Sbjct: 62 IRRKGGKAVANYDSVEEGEKIVKTALDAFGRI-DIVINNAGILRDRSFSRISDEDWDKIQ 120
Query: 381 AVNLKGIFLVTQAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVA 560
V+L+G FLVT+AA + GN GQ NY A+K G++GL+ +A
Sbjct: 121 RVHLRGSFLVTRAAWDHMKKQKFGRIIMTSSASRI-YGNFGQANYCAAKLGLLGLSNCLA 179
Query: 561 RELGRYRIRCNSVLPGFIKTPMAQKVPQKVLDKVVGMIPMGHLGDPEDVADVVAFLASED 740
E + I CN++ P +P+ +++ + P+ VA +V +L E
Sbjct: 180 VEGKKNNIHCNTIAPTAGSRMTQSILPEDLVEAL----------KPDYVAPLVLWLCHE- 228
Query: 741 SGYITGASVEVTGGLF 788
S E GGLF
Sbjct: 229 -------SCEENGGLF 237
>ref|NP_777247.1| dehydrogenase/reductase SDR family member 4 [Bos taurus].
Length = 260
Score = 74.7 bits (182), Expect = 1e-13
Identities = 63/246 (25%), Positives = 102/246 (41%), Gaps = 3/246 (1%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQAD 233
VT + GIG A++ RL V L G G
Sbjct: 19 VTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDRAVATLKGEGLSV-------TGTVCH 71
Query: 234 VSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVT 413
V +AE RL+ ++ + A L+ + E+ WDK++ VN+K L+T
Sbjct: 72 VGKAEDRERLVATAVKLHGGVDILISNAAVSPFFGSLMDVPEEVWDKILDVNVKATALLT 131
Query: 414 QAAAQALVXXXXXXXXXXXXXXXXK-VGNMGQTNYAASKAGVIGLTQAVARELGRYRIRC 590
+A + ++G Y SK ++GLT+ +A EL +R
Sbjct: 132 KAVVPEMAKRGGGSIVIVSSIAAYSPFPSLGP--YNVSKTALLGLTKNLALELAESNVRV 189
Query: 591 NSVLPGFIKTPMAQKVPQKVL--DKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGAS 764
N + PG I+T ++ + + + + + +G PE+ A +V+FL SED+ YITG +
Sbjct: 190 NCLAPGLIRTSFSRVLWEDPARQESIKATFQIKRIGKPEECAGIVSFLCSEDASYITGET 249
Query: 765 VEVTGG 782
V V GG
Sbjct: 250 VVVAGG 255
>ref|NP_001193891.1| L-xylulose reductase-like [Bos taurus].
Length = 244
Score = 71.2 bits (173), Expect = 1e-12
Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 2/165 (1%)
Frame = +3
Query: 294 PPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVTQAAAQALVXXXXXXXXXXXX 473
P ++V+ A + L ++++D+D+ +VNL+ F V+Q A+ ++
Sbjct: 76 PVDLLVNNAAVALMRPFLEVTKEDFDRSFSVNLRSAFQVSQIVARGMINRGVPGSIVNVS 135
Query: 474 XXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCNSVLPGFIKTPMAQKV--PQK 647
V Y+ +K + LT+++A ELG Y+IR NSV P + T M QKV +
Sbjct: 136 SMVAHVTFPNLAAYSTTKGAMTMLTKSMAMELGPYKIRVNSVNPTVVLTAMGQKVSADPE 195
Query: 648 VLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVEVTGG 782
K+ P+ + EDV + + FL S+ S +G+ + V G
Sbjct: 196 FSQKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGSGILVDAG 240
>ref|NP_777126.1| 17-beta-hydroxysteroid dehydrogenase 14 [Bos taurus].
Length = 270
Score = 65.1 bits (157), Expect = 9e-11
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 9/193 (4%)
Frame = +3
Query: 231 DVSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLV 410
DV+ E R L+ + F R +V + ++ S + +++ +NL G + +
Sbjct: 62 DVTREEDVRTLVSETIRRFGRLDCIVNNAGYHPPPQWPEETSAQGFRQLLELNLLGTYTL 121
Query: 411 TQAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTN---YAASKAGVIGLTQAVARELGRYR 581
T+ A L VG +GQ+ Y A+K V +T+A+A + +Y
Sbjct: 122 TKLALPHL-----RKSRGNVINISSLVGAIGQSQAVPYVATKGAVTAMTKALALDESQYG 176
Query: 582 IRCNSVLPGFIKTPMAQKVPQKVLDKVVGMI------PMGHLGDPEDVADVVAFLASEDS 743
+R N + PG I TP+ +++ D + P+G +G P +VA FLASE +
Sbjct: 177 VRVNCISPGNIWTPLWEELAASTPDPTATIREGTLAQPLGRMGQPAEVAAAAVFLASE-A 235
Query: 744 GYITGASVEVTGG 782
+ TG + VTGG
Sbjct: 236 TFCTGTELLVTGG 248
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,150,048
Number of extensions: 1299316
Number of successful extensions: 6722
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 6628
Number of HSP's successfully gapped: 14
Length of query: 330
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,273,310
Effective search space: 3240041370
Effective search space used: 3240041370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003474
(992 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851004.1| PREDICTED: similar to Estradiol 17-beta-dehydro... 355 3e-98
Alignment gi|XP_862891.1| PREDICTED: similar to Estradiol 17-beta-dehydro... 152 2e-71
Alignment gi|XP_862851.1| PREDICTED: similar to Estradiol 17-beta-dehydro... 234 9e-62
Alignment gi|XP_534547.1| PREDICTED: similar to carbonic reductase 4 [Can... 113 3e-25
Alignment gi|NP_001041699.1| dehydrogenase/reductase SDR family member 4 ... 79 5e-15
Alignment gi|XP_535127.2| PREDICTED: similar to 2,4-dienoyl-CoA reductase... 77 2e-14
Alignment gi|XP_538051.2| PREDICTED: similar to 3-hydroxyacyl-CoA dehydro... 77 3e-14
Alignment gi|XP_533135.2| PREDICTED: similar to dicarbonyl L-xylulose red... 75 1e-13
Alignment gi|XP_849704.1| PREDICTED: similar to Lung carbonyl reductase [... 74 2e-13
Alignment gi|XP_535676.1| PREDICTED: similar to dehydrogenase/reductase (... 72 8e-13
>ref|XP_851004.1| PREDICTED: similar to Estradiol 17-beta-dehydrogenase 8
(17-beta-HSD 8) (17-beta-hydroxysteroid dehydrogenase 8)
(Protein Ke6) (Ke-6) isoform 2 [Canis familiaris].
Length = 259
Score = 355 bits (912), Expect = 3e-98
Identities = 190/246 (77%), Positives = 195/246 (79%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQAD 233
VTGAGSGIGRAVSVRL ETV LLGG GSEK AP GAH AFQAD
Sbjct: 14 VTGAGSGIGRAVSVRLAKEGATVAACDLDRAAACETVWLLGGQGSEKVAPGGAHTAFQAD 73
Query: 234 VSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVT 413
VSEA RRLLEQVQA F RPPSVVVSCAG+TRDEFLLRMSEDDWD+VIAVNLKGIFLVT
Sbjct: 74 VSEAGAVRRLLEQVQACFSRPPSVVVSCAGLTRDEFLLRMSEDDWDRVIAVNLKGIFLVT 133
Query: 414 QAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCN 593
QAAAQALV KVGN+GQTNYAASKAGVIGLTQ ARELGR+ IRCN
Sbjct: 134 QAAAQALVSSGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIRCN 193
Query: 594 SVLPGFIKTPMAQKVPQKVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVEV 773
SVLPGFI TPM QKVPQKVLDKV+GMIPMGHLGDPEDVAD V FLASEDSGYITGASVEV
Sbjct: 194 SVLPGFITTPMTQKVPQKVLDKVIGMIPMGHLGDPEDVADAVTFLASEDSGYITGASVEV 253
Query: 774 TGGLFM 791
TGGLFM
Sbjct: 254 TGGLFM 259
>ref|XP_862891.1| PREDICTED: similar to Estradiol 17-beta-dehydrogenase 8
(17-beta-HSD 8) (17-beta-hydroxysteroid dehydrogenase 8)
(Protein Ke6) (Ke-6) isoform 4 [Canis familiaris].
Length = 181
Score = 152 bits (385), Expect(2) = 2e-71
Identities = 80/107 (74%), Positives = 84/107 (78%)
Frame = +3
Query: 351 MSEDDWDKVIAVNLKGIFLVTQAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKA 530
MSEDDWD+VIAVNLKGIFLVTQAAAQALV KVGN+GQTNYAASKA
Sbjct: 1 MSEDDWDRVIAVNLKGIFLVTQAAAQALVSSGCRGSIINISSIVGKVGNVGQTNYAASKA 60
Query: 531 GVIGLTQAVARELGRYRIRCNSVLPGFIKTPMAQKVPQKVLDKVVGM 671
GVIGLTQ ARELGR+ IRCNSVLPGFI TPM QKVPQKVLDK+ M
Sbjct: 61 GVIGLTQTAARELGRHGIRCNSVLPGFITTPMTQKVPQKVLDKMSQM 107
Score = 135 bits (341), Expect(2) = 2e-71
Identities = 63/79 (79%), Positives = 66/79 (83%)
Frame = +1
Query: 700 RMWPMWSRSWHLRTVDTSQGHQSKSLEVFSCNCLKDPGLCSLPHHSARPPADEDSEFPGY 879
+M M S SW L+TVDTSQ Q KSLEVFSCNCL DPGLCSLPHHS RPPADEDSEFPGY
Sbjct: 103 KMSQMRSHSWRLKTVDTSQAPQWKSLEVFSCNCLTDPGLCSLPHHSNRPPADEDSEFPGY 162
Query: 880 KRGGSVWLQNAEYGKQGCL 936
KR SVWL NAEYG+QGCL
Sbjct: 163 KRRSSVWLWNAEYGRQGCL 181
>ref|XP_862851.1| PREDICTED: similar to Estradiol 17-beta-dehydrogenase 8
(17-beta-HSD 8) (17-beta-hydroxysteroid dehydrogenase 8)
(Protein Ke6) (Ke-6) isoform 3 [Canis familiaris].
Length = 147
Score = 234 bits (597), Expect = 9e-62
Identities = 120/147 (81%), Positives = 124/147 (84%)
Frame = +3
Query: 351 MSEDDWDKVIAVNLKGIFLVTQAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKA 530
MSEDDWD+VIAVNLKGIFLVTQAAAQALV KVGN+GQTNYAASKA
Sbjct: 1 MSEDDWDRVIAVNLKGIFLVTQAAAQALVSSGCRGSIINISSIVGKVGNVGQTNYAASKA 60
Query: 531 GVIGLTQAVARELGRYRIRCNSVLPGFIKTPMAQKVPQKVLDKVVGMIPMGHLGDPEDVA 710
GVIGLTQ ARELGR+ IRCNSVLPGFI TPM QKVPQKVLDKV+GMIPMGHLGDPEDVA
Sbjct: 61 GVIGLTQTAARELGRHGIRCNSVLPGFITTPMTQKVPQKVLDKVIGMIPMGHLGDPEDVA 120
Query: 711 DVVAFLASEDSGYITGASVEVTGGLFM 791
D V FLASEDSGYITGASVEVTGGLFM
Sbjct: 121 DAVTFLASEDSGYITGASVEVTGGLFM 147
>ref|XP_534547.1| PREDICTED: similar to carbonic reductase 4 [Canis familiaris].
Length = 237
Score = 113 bits (282), Expect = 3e-25
Identities = 80/244 (32%), Positives = 119/244 (48%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQAD 233
V G GIGRAV+ + + L G + G G H AF D
Sbjct: 7 VFGGSRGIGRAVAQVMAQKGYRLAVI----------ARNLEGARAAAGELGGDHLAFSCD 56
Query: 234 VSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVT 413
V++ + E+++ R + +V+ AGI RD L+R +D + NL G L
Sbjct: 57 VAKERDVQNTFEEMEKNLGRV-NFLVNAAGINRDSLLVRTKTEDMISQLHTNLLGSMLTC 115
Query: 414 QAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCN 593
+AA + ++ K GN GQ+ Y+ASK G++G ++A+A+E+ R +IR N
Sbjct: 116 KAALKTMIQQQRGSIVNVGSIIGLK-GNSGQSVYSASKGGLVGFSRALAKEVARKKIRVN 174
Query: 594 SVLPGFIKTPMAQKVPQKVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVEV 773
V PGF+ T M + + ++ L K IP+G G+P DVA V FL +S YITG + V
Sbjct: 175 VVAPGFVHTDMTKDLKEEHLKK---NIPLGRFGEPIDVAHAVVFLL--ESPYITGHVLVV 229
Query: 774 TGGL 785
GGL
Sbjct: 230 DGGL 233
>ref|NP_001041699.1| dehydrogenase/reductase SDR family member 4 [Canis lupus
familiaris].
Length = 255
Score = 79.3 bits (194), Expect = 5e-15
Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 5/152 (3%)
Frame = +3
Query: 342 LLRMSEDDWDKVIAVNLKGIFLVTQAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAA 521
L+ ++E+ WDK++ +N+K L+T+A + + G Y
Sbjct: 103 LMDVTEEVWDKILDINVKATALMTKAVVPEMEKRGGGSVVIVASIGAY-LPFPGLGPYNV 161
Query: 522 SKAGVIGLTQAVARELGRYRIRCNSVLPGFIKTPMAQ-----KVPQKVLDKVVGMIPMGH 686
SK ++GLT+ +AREL + IR N + PG IKT ++ K ++ + KV+ +
Sbjct: 162 SKTALLGLTKNLARELDQRNIRVNCLAPGLIKTSFSKVLWMDKAREESIKKVM---QIRR 218
Query: 687 LGDPEDVADVVAFLASEDSGYITGASVEVTGG 782
+G P+D A +V+FL SED+ YITG +V V GG
Sbjct: 219 MGKPDDCAGIVSFLCSEDASYITGETVVVGGG 250
>ref|XP_535127.2| PREDICTED: similar to 2,4-dienoyl-CoA reductase, mitochondrial
precursor (2,4-dienoyl-CoA reductase [NADPH])
(4-enoyl-CoA reductase [NADPH]) [Canis familiaris].
Length = 370
Score = 77.4 bits (189), Expect = 2e-14
Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 5/248 (2%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQAD 233
+TG G+G+G+ ++ L ++T + + K HA Q D
Sbjct: 99 ITGGGTGLGKGMTALLSSLGAQCVIASRNIDVLKDTAEQISSQTGNK-----VHA-IQCD 152
Query: 234 VSEAETARRLLEQVQAYFFRPPSVVVSCAG--ITRDEFLLRMSEDDWDKVIAVNLKGIFL 407
+ E ++ + ++ P V+ + AG I+ E R+S + W + + L G
Sbjct: 153 IRNPEMVQKTVSELIKVAGHPAIVINNAAGNFISPTE---RLSANAWKTITDIVLNGTAY 209
Query: 408 VTQAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIR 587
VT + L+ + G+ A++KAGV + +++A E G+Y +R
Sbjct: 210 VTLEIGKQLIKAQKGAAFLAITTIFAESGSGFVVPSASAKAGVEAMNKSLAAEWGKYGMR 269
Query: 588 CNSVLPGFIKTPMA--QKVPQKVLDK-VVGMIPMGHLGDPEDVADVVAFLASEDSGYITG 758
N + PG IKT A + P +K ++ IP G LG E++A++ AFL S+ + +I G
Sbjct: 270 FNVIQPGPIKTKGAFSRLDPTGTFEKDMIDRIPCGRLGTVEELANLAAFLCSDYASWING 329
Query: 759 ASVEVTGG 782
A + GG
Sbjct: 330 AVIRFDGG 337
>ref|XP_538051.2| PREDICTED: similar to 3-hydroxyacyl-CoA dehydrogenase type II (Type
II HADH) (Endoplasmic reticulum-associated amyloid
beta-peptide binding protein) (Short-chain type
dehydrogenase/reductase XH98G2) isoform 1 [Canis
familiaris].
Length = 261
Score = 77.0 bits (188), Expect = 3e-14
Identities = 72/262 (27%), Positives = 115/262 (43%), Gaps = 16/262 (6%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSE---KGAPSGAHAAF 224
VTG SG+G A + RL T LL P S+ + G + F
Sbjct: 15 VTGGASGLGLATAERLVGQGA--------------TAVLLDLPNSDGEVQAKKLGKNCTF 60
Query: 225 QA-DVSEAETARRLLEQVQAYFFRPPSVVVSCAGITR--DEFLLRMSE----DDWDKVIA 383
A DV+ + + L + F R V V+CAGI + L+ ++ +D+ +V+
Sbjct: 61 AAADVTSEKDVQAALTLAKEKFGRV-DVAVNCAGIAVAIKTYNLKKNQAHTLEDFQRVLN 119
Query: 384 VNLKGIFLVTQAAAQALVXXXXXXXXXXXXXXXXKV-----GNMGQTNYAASKAGVIGLT 548
VNL G F V + A + G +GQ Y+ASK G++G+T
Sbjct: 120 VNLLGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMT 179
Query: 549 QAVARELGRYRIRCNSVLPGFIKTPMAQKVPQKVLDKVVGMIPM-GHLGDPEDVADVVAF 725
+AR+L IR ++ PG TP+ +P+KV + + +P LGDP + A +V
Sbjct: 180 LPIARDLAPVGIRVMTIAPGLFGTPLLTSLPEKVRNFLASQVPFPNRLGDPAEYAHLVQ- 238
Query: 726 LASEDSGYITGASVEVTGGLFM 791
A ++ +I G + + G + M
Sbjct: 239 -AIIENPFINGEVIRLDGAIRM 259
>ref|XP_533135.2| PREDICTED: similar to dicarbonyl L-xylulose reductase [Canis
familiaris].
Length = 235
Score = 75.1 bits (183), Expect = 1e-13
Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 3/187 (1%)
Frame = +3
Query: 231 DVSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLV 410
D+ + E R L V P ++V+ A + + L ++++ D VNL+ I V
Sbjct: 51 DLGDWEATERALGSVG-----PVDLLVNNAAVALLQPFLEVTKEACDTSFHVNLRAIIQV 105
Query: 411 TQAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRC 590
+Q A+ L+ + + Y ++K + LT+ +A ELG ++IR
Sbjct: 106 SQIVARGLIARGAPGSIVNISSQASQRAIANHSVYCSTKGAMDMLTKVMALELGPHKIRV 165
Query: 591 NSVLPGFIKTPMAQ---KVPQKVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGA 761
N+V P + TPM Q PQK ++ IP+G + E+V D + FL S+ S TG+
Sbjct: 166 NTVNPTVVMTPMGQANWSNPQKA-KTMLDRIPLGKFAEVENVVDTILFLLSDRSSMTTGS 224
Query: 762 SVEVTGG 782
+V V GG
Sbjct: 225 AVPVDGG 231
>ref|XP_849704.1| PREDICTED: similar to Lung carbonyl reductase [NADPH]
(NADPH-dependent carbonyl reductase) (LCR) (Adipocyte
P27 protein) (AP27) [Canis familiaris].
Length = 270
Score = 74.3 bits (181), Expect = 2e-13
Identities = 51/186 (27%), Positives = 92/186 (49%), Gaps = 2/186 (1%)
Frame = +3
Query: 231 DVSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLV 410
D+ + E R L V P ++V+ A + + L ++++ +D+ VNL+ + V
Sbjct: 86 DLGDWEATERALGSVG-----PVDLLVNNAAVALLQPFLEVTKEAFDRAFNVNLRSVVQV 140
Query: 411 TQAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRC 590
+Q A+ ++ V + Y+++K + LT+A+A ELG Y+IR
Sbjct: 141 SQIVARGMIHRGVPGSIVNVSSMVAHVTFPNLSVYSSTKGAMTMLTKAMASELGPYQIRV 200
Query: 591 NSVLPGFIKTPMAQKV--PQKVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGAS 764
NSV P + T M+QK+ +++ K+ P+ D EDV + + FL S+ S +G+
Sbjct: 201 NSVDPTVVPTAMSQKILTDPELVRKLKERHPLRKFADMEDVVNSILFLLSDRSASTSGSG 260
Query: 765 VEVTGG 782
+ V GG
Sbjct: 261 ILVDGG 266
>ref|XP_535676.1| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 6
[Canis familiaris].
Length = 245
Score = 72.0 bits (175), Expect = 8e-13
Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 6/166 (3%)
Frame = +3
Query: 303 VVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVTQAAAQALVXXXXXXXXXXXXXXX 482
V+ + AG +L E DWD + +N++ ++L+ +A ++
Sbjct: 77 VLFNVAGFVHHGTILDCEEKDWDFSMNLNIRSMYLMIKAFLPKMLAQKSGNIINMSSVAS 136
Query: 483 XKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCNSVLPGFIKTPMAQKVPQ------ 644
G + Y+ +KA VIGLT+++A + + IRCN V P + TP Q+ Q
Sbjct: 137 SIKGVENRCVYSTTKAAVIGLTKSLATDFIQQGIRCNCVCPATVDTPSLQERIQARPNTE 196
Query: 645 KVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVEVTGG 782
+ L+ + +G E++A + +LAS++S YITG V + GG
Sbjct: 197 EALNYFLKRQKIGRFATAEEIALLCVYLASDESAYITGNPVIIDGG 242
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,647,299
Number of extensions: 1312910
Number of successful extensions: 6789
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 6683
Number of HSP's successfully gapped: 22
Length of query: 330
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 227
Effective length of database: 15,440,896
Effective search space: 3505083392
Effective search space used: 3505083392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003474
(992 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055049.1| estradiol 17-beta-dehydrogenase 8 [Homo sapiens]. 352 4e-97
Alignment gi|NP_116172.2| carbonyl reductase family member 4 [Homo sapien... 109 4e-24
Alignment gi|NP_001350.1| 2,4-dienoyl-CoA reductase, mitochondrial precur... 80 4e-15
Alignment gi|NP_000405.1| peroxisomal multifunctional enzyme type 2 isofo... 79 6e-15
Alignment gi|NP_066284.2| dehydrogenase/reductase SDR family member 4 [Ho... 79 8e-15
Alignment gi|NP_004484.1| 3-hydroxyacyl-CoA dehydrogenase type-2 isoform ... 77 3e-14
Alignment gi|NP_064524.3| 3-hydroxybutyrate dehydrogenase type 2 [Homo sa... 76 4e-14
Alignment gi|NP_057370.1| L-xylulose reductase isoform 1 [Homo sapiens]. 76 4e-14
Alignment gi|NP_001186221.1| peroxisomal multifunctional enzyme type 2 is... 74 2e-13
Alignment gi|NP_001186220.1| peroxisomal multifunctional enzyme type 2 is... 74 2e-13
>ref|NP_055049.1| estradiol 17-beta-dehydrogenase 8 [Homo sapiens].
Length = 261
Score = 352 bits (902), Expect = 4e-97
Identities = 187/246 (76%), Positives = 195/246 (79%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQAD 233
VTGAGSGIGRAVSVRL QETV+LLGGPGS++G P G HAAFQAD
Sbjct: 16 VTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQAD 75
Query: 234 VSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVT 413
VSEA AR LLEQVQA F RPPSVVVSCAGIT+DEFLL MSEDDWDKVIAVNLKG FLVT
Sbjct: 76 VSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVT 135
Query: 414 QAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCN 593
QAAAQALV KVGN+GQTNYAASKAGVIGLTQ ARELGR+ IRCN
Sbjct: 136 QAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIRCN 195
Query: 594 SVLPGFIKTPMAQKVPQKVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVEV 773
SVLPGFI TPM QKVPQKV+DK+ MIPMGHLGDPEDVADVVAFLASEDSGYITG SVEV
Sbjct: 196 SVLPGFIATPMTQKVPQKVVDKITEMIPMGHLGDPEDVADVVAFLASEDSGYITGTSVEV 255
Query: 774 TGGLFM 791
TGGLFM
Sbjct: 256 TGGLFM 261
>ref|NP_116172.2| carbonyl reductase family member 4 [Homo sapiens].
Length = 237
Score = 109 bits (272), Expect = 4e-24
Identities = 78/244 (31%), Positives = 119/244 (48%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQAD 233
V G GIGRAV+ + + L G + G G H AF D
Sbjct: 7 VFGGSRGIGRAVAQLMARKGYRLAVI----------ARNLEGAKAAAGDLGGDHLAFSCD 56
Query: 234 VSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVT 413
V++ + E+++ + R + +V+ AGI RD L+R +D + NL G L
Sbjct: 57 VAKEHDVQNTFEELEKHLGRV-NFLVNAAGINRDGLLVRTKTEDMVSQLHTNLLGSMLTC 115
Query: 414 QAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCN 593
+AA + ++ K GN GQ+ Y+ASK G++G ++A+A+E+ R +IR N
Sbjct: 116 KAAMRTMIQQQGGSIVNVGSIVGLK-GNSGQSVYSASKGGLVGFSRALAKEVARKKIRVN 174
Query: 594 SVLPGFIKTPMAQKVPQKVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVEV 773
V PGF+ T M + + ++ L K IP+G G+ +VA V FL +S YITG + V
Sbjct: 175 VVAPGFVHTDMTKDLKEEHLKK---NIPLGRFGETIEVAHAVVFLL--ESPYITGHVLVV 229
Query: 774 TGGL 785
GGL
Sbjct: 230 DGGL 233
>ref|NP_001350.1| 2,4-dienoyl-CoA reductase, mitochondrial precursor [Homo sapiens].
Length = 335
Score = 79.7 bits (195), Expect = 4e-15
Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 5/248 (2%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQAD 233
+TG G+G+G+ ++ L + T + + K HA Q D
Sbjct: 64 ITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNK-----VHA-IQCD 117
Query: 234 VSEAETARRLLEQVQAYFFRPPSVVVSCAG--ITRDEFLLRMSEDDWDKVIAVNLKGIFL 407
V + + + + ++ P V+ + AG I+ E R+S + W + + L G
Sbjct: 118 VRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTE---RLSPNAWKTITDIVLNGTAF 174
Query: 408 VTQAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIR 587
VT + L+ + G+ A++KAGV +++++A E G+Y +R
Sbjct: 175 VTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWGKYGMR 234
Query: 588 CNSVLPGFIKTPMA--QKVPQKVLDK-VVGMIPMGHLGDPEDVADVVAFLASEDSGYITG 758
N + PG IKT A + P +K ++G IP G LG E++A++ AFL S+ + +I G
Sbjct: 235 FNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGRLGTVEELANLAAFLCSDYASWING 294
Query: 759 ASVEVTGG 782
A ++ GG
Sbjct: 295 AVIKFDGG 302
>ref|NP_000405.1| peroxisomal multifunctional enzyme type 2 isoform 2 [Homo sapiens].
Length = 736
Score = 79.0 bits (193), Expect = 6e-15
Identities = 74/258 (28%), Positives = 112/258 (43%), Gaps = 13/258 (5%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQ-- 227
VTGAG+G+GRA ++ V LGG KG G+ AA +
Sbjct: 14 VTGAGAGLGRAYALAFAERGALV------------VVNDLGG--DFKGVGKGSLAADKVV 59
Query: 228 -----------ADVSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDK 374
A+ E ++++ F R VVV+ AGI RD R+S++DWD
Sbjct: 60 EEIRRRGGKAVANYDSVEEGEKVVKTALDAFGRI-DVVVNNAGILRDRSFARISDEDWDI 118
Query: 375 VIAVNLKGIFLVTQAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQA 554
+ V+L+G F VT+AA + + GN GQ NY+A+K G++GL +
Sbjct: 119 IHRVHLRGSFQVTRAAWEHMKKQKYGRIIMTSSASGI-YGNFGQANYSAAKLGLLGLANS 177
Query: 555 VARELGRYRIRCNSVLPGFIKTPMAQKVPQKVLDKVVGMIPMGHLGDPEDVADVVAFLAS 734
+A E + I CN++ P +P+ +++ + PE VA +V +L
Sbjct: 178 LAIEGRKSNIHCNTIAPNAGSRMTQTVMPEDLVEAL----------KPEYVAPLVLWLCH 227
Query: 735 EDSGYITGASVEVTGGLF 788
E S E GGLF
Sbjct: 228 E--------SCEENGGLF 237
>ref|NP_066284.2| dehydrogenase/reductase SDR family member 4 [Homo sapiens].
Length = 278
Score = 78.6 bits (192), Expect = 8e-15
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 2/245 (0%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQAD 233
VT + GIG A++ RL + V L G G
Sbjct: 37 VTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSV-------TGTVCH 89
Query: 234 VSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVT 413
V +AE RL+ +V + A ++ ++E+ WDK + +N+K L+T
Sbjct: 90 VGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMT 149
Query: 414 QAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCN 593
+A + + G + Y SK ++GLT+ +A EL IR N
Sbjct: 150 KAVVPEMEKRGGGSVVIVSSIAAFSP-SPGFSPYNVSKTALLGLTKTLAIELAPRNIRVN 208
Query: 594 SVLPGFIKTPMAQKV--PQKVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASV 767
+ PG IKT ++ + ++ + + + + LG+PED A +V+FL SED+ YITG +V
Sbjct: 209 CLAPGLIKTSFSRMLWMDKEKEESMKETLRIRRLGEPEDCAGIVSFLCSEDASYITGETV 268
Query: 768 EVTGG 782
V GG
Sbjct: 269 VVGGG 273
>ref|NP_004484.1| 3-hydroxyacyl-CoA dehydrogenase type-2 isoform 1 [Homo sapiens].
Length = 261
Score = 76.6 bits (187), Expect = 3e-14
Identities = 66/259 (25%), Positives = 109/259 (42%), Gaps = 13/259 (5%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQ-A 230
+TG SG+G A + RL + L G + G + F A
Sbjct: 15 ITGGASGLGLATAERLVGQGASAVL-----------LDLPNSGGEAQAKKLGNNCVFAPA 63
Query: 231 DVSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSE------DDWDKVIAVNL 392
DV+ + + L + F R V V+CAGI + + +D+ +V+ VNL
Sbjct: 64 DVTSEKDVQTALALAKGKFGRV-DVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNL 122
Query: 393 KGIFLVTQAAAQALVXXXXXXXXXXXXXXXXKV-----GNMGQTNYAASKAGVIGLTQAV 557
G F V + A + G +GQ Y+ASK G++G+T +
Sbjct: 123 MGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPI 182
Query: 558 ARELGRYRIRCNSVLPGFIKTPMAQKVPQKVLDKVVGMIPM-GHLGDPEDVADVVAFLAS 734
AR+L IR ++ PG TP+ +P+KV + + +P LGDP + A +V A
Sbjct: 183 ARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVPFPSRLGDPAEYAHLVQ--AI 240
Query: 735 EDSGYITGASVEVTGGLFM 791
++ ++ G + + G + M
Sbjct: 241 IENPFLNGEVIRLDGAIRM 259
>ref|NP_064524.3| 3-hydroxybutyrate dehydrogenase type 2 [Homo sapiens].
Length = 245
Score = 76.3 bits (186), Expect = 4e-14
Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%)
Frame = +3
Query: 303 VVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVTQAAAQALVXXXXXXXXXXXXXXX 482
V+ + AG +L E DWD + +N++ ++L+ +A ++
Sbjct: 77 VLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVAS 136
Query: 483 XKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCNSVLPGFIKTPMAQK------VPQ 644
G + + Y+ +KA VIGLT++VA + + IRCN V PG + TP Q+ P+
Sbjct: 137 SVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPE 196
Query: 645 KVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVEVTGG 782
+ + + G E++A + +LAS++S Y+TG V + GG
Sbjct: 197 EARNDFLKRQKTGRFATAEEIAMLCVYLASDESAYVTGNPVIIDGG 242
>ref|NP_057370.1| L-xylulose reductase isoform 1 [Homo sapiens].
Length = 244
Score = 76.3 bits (186), Expect = 4e-14
Identities = 67/261 (25%), Positives = 109/261 (41%), Gaps = 16/261 (6%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQA- 230
VTGAG GIGR TVQ L G+ A S A +
Sbjct: 12 VTGAGKGIGRG------------------------TVQALHATGARVVAVSRTQADLDSL 47
Query: 231 ------------DVSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDK 374
D+ + E R L V P ++V+ A + + L ++++ +D+
Sbjct: 48 VRECPGIEPVCVDLGDWEATERALGSVG-----PVDLLVNNAAVALLQPFLEVTKEAFDR 102
Query: 375 VIAVNLKGIFLVTQAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQA 554
VNL+ + V+Q A+ L+ + + Y ++K + LT+
Sbjct: 103 SFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKV 162
Query: 555 VARELGRYRIRCNSVLPGFIKTPMAQKV---PQKVLDKVVGMIPMGHLGDPEDVADVVAF 725
+A ELG ++IR N+V P + T M Q P K ++ IP+G + E V + + F
Sbjct: 163 MALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKA-KTMLNRIPLGKFAEVEHVVNAILF 221
Query: 726 LASEDSGYITGASVEVTGGLF 788
L S+ SG TG+++ V GG +
Sbjct: 222 LLSDRSGMTTGSTLPVEGGFW 242
>ref|NP_001186221.1| peroxisomal multifunctional enzyme type 2 isoform 3 [Homo sapiens].
Length = 718
Score = 73.9 bits (180), Expect = 2e-13
Identities = 52/162 (32%), Positives = 79/162 (48%)
Frame = +3
Query: 303 VVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVTQAAAQALVXXXXXXXXXXXXXXX 482
VVV+ AGI RD R+S++DWD + V+L+G F VT+AA + +
Sbjct: 77 VVVNNAGILRDRSFARISDEDWDIIHRVHLRGSFQVTRAAWEHMKKQKYGRIIMTSSASG 136
Query: 483 XKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCNSVLPGFIKTPMAQKVPQKVLDKV 662
GN GQ NY+A+K G++GL ++A E + I CN++ P +P+ +++ +
Sbjct: 137 I-YGNFGQANYSAAKLGLLGLANSLAIEGRKSNIHCNTIAPNAGSRMTQTVMPEDLVEAL 195
Query: 663 VGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVEVTGGLF 788
PE VA +V +L E S E GGLF
Sbjct: 196 ----------KPEYVAPLVLWLCHE--------SCEENGGLF 219
>ref|NP_001186220.1| peroxisomal multifunctional enzyme type 2 isoform 1 [Homo sapiens].
Length = 761
Score = 73.9 bits (180), Expect = 2e-13
Identities = 52/162 (32%), Positives = 79/162 (48%)
Frame = +3
Query: 303 VVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVTQAAAQALVXXXXXXXXXXXXXXX 482
VVV+ AGI RD R+S++DWD + V+L+G F VT+AA + +
Sbjct: 120 VVVNNAGILRDRSFARISDEDWDIIHRVHLRGSFQVTRAAWEHMKKQKYGRIIMTSSASG 179
Query: 483 XKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCNSVLPGFIKTPMAQKVPQKVLDKV 662
GN GQ NY+A+K G++GL ++A E + I CN++ P +P+ +++ +
Sbjct: 180 I-YGNFGQANYSAAKLGLLGLANSLAIEGRKSNIHCNTIAPNAGSRMTQTVMPEDLVEAL 238
Query: 663 VGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVEVTGGLF 788
PE VA +V +L E S E GGLF
Sbjct: 239 ----------KPEYVAPLVLWLCHE--------SCEENGGLF 262
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,848,364
Number of extensions: 1290234
Number of successful extensions: 6520
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 6406
Number of HSP's successfully gapped: 20
Length of query: 330
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,901,872
Effective search space: 3382724944
Effective search space used: 3382724944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003474
(992 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038571.2| estradiol 17-beta-dehydrogenase 8 [Mus musculus]. 343 1e-94
Alignment gi|NP_663570.2| carbonyl reductase family member 4 [Mus musculu... 106 2e-23
Alignment gi|NP_001165526.1| 3-hydroxybutyrate dehydrogenase type 2 isofo... 81 1e-15
Alignment gi|NP_081484.1| 3-hydroxybutyrate dehydrogenase type 2 isoform ... 81 1e-15
Alignment gi|NP_032318.2| peroxisomal multifunctional enzyme type 2 [Mus ... 79 5e-15
Alignment gi|NP_080704.2| L-xylulose reductase [Mus musculus]. 77 3e-14
Alignment gi|NP_058043.3| 3-hydroxyacyl-CoA dehydrogenase type-2 [Mus mus... 73 4e-13
Alignment gi|NP_001033027.2| dehydrogenase/reductase SDR family member 4 ... 70 2e-12
Alignment gi|NP_080448.1| 2,4-dienoyl-CoA reductase, mitochondrial precur... 69 7e-12
Alignment gi|NP_031647.1| carbonyl reductase [NADPH] 2 [Mus musculus]. 67 3e-11
>ref|NP_038571.2| estradiol 17-beta-dehydrogenase 8 [Mus musculus].
Length = 259
Score = 343 bits (880), Expect = 1e-94
Identities = 179/246 (72%), Positives = 194/246 (78%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQAD 233
VTGAGSGIGRA+SVRL Q+TV+LLG PGSE GAP G HAAFQAD
Sbjct: 14 VTGAGSGIGRAISVRLAAEGAAVAACDLDGAAAQDTVRLLGSPGSEDGAPRGKHAAFQAD 73
Query: 234 VSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVT 413
VS+ ARRLLE+VQA F RPPSVVVSCAGITRDEFLL MSE+DWD+VIAVNLKG FLVT
Sbjct: 74 VSQGPAARRLLEEVQACFSRPPSVVVSCAGITRDEFLLHMSEEDWDRVIAVNLKGTFLVT 133
Query: 414 QAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCN 593
QAAAQALV KVGN+GQTNYA+SKAGVIGLTQ ARELGR+ IRCN
Sbjct: 134 QAAAQALVSSGGRGSIINISSIIGKVGNIGQTNYASSKAGVIGLTQTAARELGRHGIRCN 193
Query: 594 SVLPGFIKTPMAQKVPQKVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVEV 773
SVLPGFI TPM QK+P+KV DKV MIP+GH+GDPEDVADVVAFLASEDSGYITGASVEV
Sbjct: 194 SVLPGFIATPMTQKMPEKVKDKVTAMIPLGHMGDPEDVADVVAFLASEDSGYITGASVEV 253
Query: 774 TGGLFM 791
+GGLFM
Sbjct: 254 SGGLFM 259
>ref|NP_663570.2| carbonyl reductase family member 4 [Mus musculus].
Length = 236
Score = 106 bits (265), Expect = 2e-23
Identities = 74/244 (30%), Positives = 120/244 (49%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQAD 233
V G GIGRAV+ + + T LGG H AF+ D
Sbjct: 7 VFGGSRGIGRAVAQLMAQKGYRLAIVSRNLEVAKVTAGELGGN----------HLAFRCD 56
Query: 234 VSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVT 413
V++ + + ++++ + P + +V+ AGI RD L+R +D + NL G L
Sbjct: 57 VAKEQDVQSTFQEMEKHL-GPVNFLVNAAGINRDSLLVRTKTEDMISQLHTNLLGSMLTC 115
Query: 414 QAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCN 593
+AA + ++ GN+GQ+ Y+A+K G++G ++++A+E+ R +IR N
Sbjct: 116 KAAMKTMIQQGGSIVNVGSIIGLK--GNVGQSAYSATKGGLVGFSRSLAKEVARKKIRVN 173
Query: 594 SVLPGFIKTPMAQKVPQKVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVEV 773
V PGFI+T M + + ++ K IP+G G+ +VA V FL +S YITG + V
Sbjct: 174 VVAPGFIRTDMTRHLKEEHFKK---NIPLGRFGETLEVAHAVVFLL--ESPYITGHVLIV 228
Query: 774 TGGL 785
GGL
Sbjct: 229 DGGL 232
>ref|NP_001165526.1| 3-hydroxybutyrate dehydrogenase type 2 isoform 1 [Mus musculus].
Length = 255
Score = 80.9 bits (198), Expect = 1e-15
Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 6/184 (3%)
Frame = +3
Query: 249 TARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVTQAAAQ 428
T +R ++Q + R V+ + AG +L E DWD + +N++ +FL+ +A
Sbjct: 70 TKKRQIDQFASEIERI-DVLFNVAGFVHHGTILDCEEKDWDFSMNLNVRSMFLMIKAFLP 128
Query: 429 ALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCNSVLPG 608
++ G + Y+A+KA VIGLT++VA + + IRCN V PG
Sbjct: 129 KMLAQKSGNIINMSSVASSIKGVENRCVYSATKAAVIGLTKSVAADFIQQGIRCNCVCPG 188
Query: 609 FIKTP------MAQKVPQKVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVE 770
+ TP A+ P++ L + G E+VA + +LAS++S Y+TG V
Sbjct: 189 TVDTPSLQERIQARDNPKEALKTFLNRQKTGRFASAEEVALLCVYLASDESAYVTGNPVI 248
Query: 771 VTGG 782
+ GG
Sbjct: 249 IDGG 252
>ref|NP_081484.1| 3-hydroxybutyrate dehydrogenase type 2 isoform 2 [Mus musculus].
Length = 245
Score = 80.9 bits (198), Expect = 1e-15
Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 6/184 (3%)
Frame = +3
Query: 249 TARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVTQAAAQ 428
T +R ++Q + R V+ + AG +L E DWD + +N++ +FL+ +A
Sbjct: 60 TKKRQIDQFASEIERI-DVLFNVAGFVHHGTILDCEEKDWDFSMNLNVRSMFLMIKAFLP 118
Query: 429 ALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCNSVLPG 608
++ G + Y+A+KA VIGLT++VA + + IRCN V PG
Sbjct: 119 KMLAQKSGNIINMSSVASSIKGVENRCVYSATKAAVIGLTKSVAADFIQQGIRCNCVCPG 178
Query: 609 FIKTP------MAQKVPQKVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVE 770
+ TP A+ P++ L + G E+VA + +LAS++S Y+TG V
Sbjct: 179 TVDTPSLQERIQARDNPKEALKTFLNRQKTGRFASAEEVALLCVYLASDESAYVTGNPVI 238
Query: 771 VTGG 782
+ GG
Sbjct: 239 IDGG 242
>ref|NP_032318.2| peroxisomal multifunctional enzyme type 2 [Mus musculus].
Length = 735
Score = 79.0 bits (193), Expect = 5e-15
Identities = 75/258 (29%), Positives = 109/258 (42%), Gaps = 13/258 (5%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQ-- 227
VTGAG G+GRA ++ V LGG KG G+ AA +
Sbjct: 14 VTGAGGGLGRAYALAFAERGALVI------------VNDLGG--DFKGIGKGSSAADKVV 59
Query: 228 -----------ADVSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDK 374
A+ E +L++ F R VVV+ AGI RD R+S++DWD
Sbjct: 60 AEIRRKGGKAVANYDSVEAGEKLVKTALDTFGRI-DVVVNNAGILRDRSFSRISDEDWDI 118
Query: 375 VIAVNLKGIFLVTQAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQA 554
+ V+L+G F VT+AA + GN GQ NY+A+K G++GL
Sbjct: 119 IHRVHLRGSFQVTRAAWDHMKKQNYGRILMTSSASGI-YGNFGQANYSAAKLGILGLCNT 177
Query: 555 VARELGRYRIRCNSVLPGFIKTPMAQKVPQKVLDKVVGMIPMGHLGDPEDVADVVAFLAS 734
+A E + I CN++ P +P+ +++ + PE VA +V +L
Sbjct: 178 LAIEGRKNNIHCNTIAPNAGSRMTETVLPEDLVEAL----------KPEYVAPLVLWLCH 227
Query: 735 EDSGYITGASVEVTGGLF 788
E S E GGLF
Sbjct: 228 E--------SCEENGGLF 237
>ref|NP_080704.2| L-xylulose reductase [Mus musculus].
Length = 244
Score = 76.6 bits (187), Expect = 3e-14
Identities = 64/246 (26%), Positives = 107/246 (43%), Gaps = 3/246 (1%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQAD 233
VTGAG GIGR+ + L + V+ PG E D
Sbjct: 12 VTGAGKGIGRSTVLALKAAGAQVVAVSRTREDLDDLVREC--PGVEPVC---------VD 60
Query: 234 VSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVT 413
+++ E + L V P ++V+ A + + L ++++ D VNL+ + V+
Sbjct: 61 LADWEATEQALSNVG-----PVDLLVNNAAVALLQPFLEVTKEACDTSFNVNLRAVIQVS 115
Query: 414 QAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCN 593
Q A+ ++ + T Y ++K + LT+ +A ELG ++IR N
Sbjct: 116 QIVAKGMIARGVPGAIVNVSSQASQRALTNHTVYCSTKGALDMLTKMMALELGPHKIRVN 175
Query: 594 SVLPGFIKTPMAQ---KVPQKVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGAS 764
+V P + TPM + P K ++ IP+G + E+V D + FL S SG TG++
Sbjct: 176 AVNPTVVMTPMGRTNWSDPHKA-KAMLDRIPLGKFAEVENVVDTILFLLSNRSGMTTGST 234
Query: 765 VEVTGG 782
+ V GG
Sbjct: 235 LPVDGG 240
>ref|NP_058043.3| 3-hydroxyacyl-CoA dehydrogenase type-2 [Mus musculus].
Length = 261
Score = 72.8 bits (177), Expect = 4e-13
Identities = 71/262 (27%), Positives = 111/262 (42%), Gaps = 16/262 (6%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPS---GAHAAF 224
VTG SG+G A + RL T LL P SE A + G F
Sbjct: 15 VTGGASGLGLATAKRLVGQGA--------------TAVLLDVPDSEGEAQAKKLGESCIF 60
Query: 225 Q-ADVSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSE------DDWDKVIA 383
A+V+ + + L + F R V V+CAGI + +D+ +VI
Sbjct: 61 APANVTSEKEIQAALTLAKEKFGRI-DVAVNCAGIAVAIKTYHQKKNKIHTLEDFQRVIN 119
Query: 384 VNLKGIFLVTQAAAQALVXXXXXXXXXXXXXXXXKV-----GNMGQTNYAASKAGVIGLT 548
VNL G F V + A + G +GQ Y+ASK G++G+T
Sbjct: 120 VNLIGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMT 179
Query: 549 QAVARELGRYRIRCNSVLPGFIKTPMAQKVPQKVLDKVVGMIPM-GHLGDPEDVADVVAF 725
+AR+L IR ++ PG TP+ +P+KV + + +P LGDP + A +V
Sbjct: 180 LPIARDLAPTGIRVVTIAPGLFATPLLTTLPEKVRNFLASQVPFPSRLGDPAEYAHLVQT 239
Query: 726 LASEDSGYITGASVEVTGGLFM 791
+ ++ ++ G + + G + M
Sbjct: 240 II--ENPFLNGEVIRLDGAIRM 259
>ref|NP_001033027.2| dehydrogenase/reductase SDR family member 4 isoform 1 [Mus
musculus].
Length = 279
Score = 70.5 bits (171), Expect = 2e-12
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Frame = +3
Query: 342 LLRMSEDDWDKVIAVNLKGIFLVTQAAAQALVXXXXXXXXXXXXXXXX-KVGNMGQTNYA 518
L+ ++E+ WDKV+++N+ ++ +A + + ++G Y
Sbjct: 127 LMDVTEEVWDKVLSINVTATAMMIKAVVPEMEKRGGGSVVIVGSVAGFTRFPSLGP--YN 184
Query: 519 ASKAGVIGLTQAVARELGRYRIRCNSVLPGFIKTPMAQKVPQKVL--DKVVGMIPMGHLG 692
SK ++GLT+ A EL IR N + PG IKT + + ++ D + + + LG
Sbjct: 185 VSKTALLGLTKNFAAELAPKNIRVNCLAPGLIKTRFSSVLWEEKAREDFIKEAMQIRRLG 244
Query: 693 DPEDVADVVAFLASEDSGYITGASVEVTGG 782
PED A +V+FL SED+ YI G +V V GG
Sbjct: 245 KPEDCAGIVSFLCSEDASYINGETVVVGGG 274
>ref|NP_080448.1| 2,4-dienoyl-CoA reductase, mitochondrial precursor [Mus musculus].
Length = 335
Score = 68.6 bits (166), Expect = 7e-12
Identities = 59/248 (23%), Positives = 109/248 (43%), Gaps = 5/248 (2%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQAD 233
+TG G+G+G+A++ L + T + + K HA + D
Sbjct: 64 ITGGGTGLGKAMTTFLSTLGAQCVIASRNIDVLKATAEEISSKTGNK-----VHA-IRCD 117
Query: 234 VSEAETARRLLEQVQAYFFRPPSVVVSCAG--ITRDEFLLRMSEDDWDKVIAVNLKGIFL 407
V + + + ++ P V+ + AG I+ E R++ + W + + L G
Sbjct: 118 VRDPDMVHNTVLELIKVAGHPDVVINNAAGNFISPSE---RLTPNGWKTITDIVLNGTAY 174
Query: 408 VTQAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIR 587
VT + L+ + G+ +++K+GV + +++A E GRY +R
Sbjct: 175 VTLEIGKQLIKAQKGAAFLAITTIYAESGSGFVMPSSSAKSGVEAMNKSLAAEWGRYGMR 234
Query: 588 CNSVLPGFIKT--PMAQKVPQKVLDK-VVGMIPMGHLGDPEDVADVVAFLASEDSGYITG 758
N + PG IKT ++ P +K ++ IP G LG E++A++ FL S+ + +I G
Sbjct: 235 FNIIQPGPIKTKGAFSRLDPTGRFEKEMIDRIPCGRLGTMEELANLATFLCSDYASWING 294
Query: 759 ASVEVTGG 782
A + GG
Sbjct: 295 AVIRFDGG 302
>ref|NP_031647.1| carbonyl reductase [NADPH] 2 [Mus musculus].
Length = 244
Score = 66.6 bits (161), Expect = 3e-11
Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 2/165 (1%)
Frame = +3
Query: 294 PPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVTQAAAQALVXXXXXXXXXXXX 473
P ++V+ A + + L ++++ +D+ +VNL+ +F V+Q A+ ++
Sbjct: 76 PVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVS 135
Query: 474 XXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCNSVLPGFIKTPMAQKV--PQK 647
V Y+++K + LT+A+A ELG ++IR NSV P + T M +KV +
Sbjct: 136 SMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPE 195
Query: 648 VLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVEVTGG 782
K+ P+ + EDV + + FL S+ S +G + V G
Sbjct: 196 FARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAG 240
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,114,046
Number of extensions: 1070777
Number of successful extensions: 5133
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 5054
Number of HSP's successfully gapped: 15
Length of query: 330
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 228
Effective length of database: 12,553,887
Effective search space: 2862286236
Effective search space used: 2862286236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003474
(992 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001124202.1| estradiol 17-beta-dehydrogenase 8 [Sus scrof... 402 e-112
Alignment gi|XP_001927120.1| PREDICTED: carbonyl reductase family member ... 112 3e-25
Alignment gi|XP_003357106.1| PREDICTED: 3-hydroxybutyrate dehydrogenase t... 80 2e-15
Alignment gi|XP_003129333.2| PREDICTED: 3-hydroxybutyrate dehydrogenase t... 80 2e-15
Alignment gi|NP_999184.1| dehydrogenase/reductase SDR family member 4 [Su... 79 3e-15
Alignment gi|NP_001177161.1| 2,4-dienoyl-CoA reductase, mitochondrial [Su... 76 3e-14
Alignment gi|NP_999471.1| peroxisomal multifunctional enzyme type 2 [Sus ... 75 4e-14
Alignment gi|XP_003135175.1| PREDICTED: 3-hydroxyacyl-CoA dehydrogenase t... 74 1e-13
Alignment gi|XP_003135174.1| PREDICTED: 3-hydroxyacyl-CoA dehydrogenase t... 74 1e-13
Alignment gi|NP_998992.1| carbonyl reductase [NADPH] 2 [Sus scrofa]. 70 2e-12
>ref|NP_001124202.1| estradiol 17-beta-dehydrogenase 8 [Sus scrofa].
Length = 259
Score = 402 bits (1033), Expect = e-112
Identities = 213/246 (86%), Positives = 213/246 (86%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQAD 233
VTGAGSGIGRAVSVRL QETVQLLGGPGSEKGAPSGAHAAFQAD
Sbjct: 14 VTGAGSGIGRAVSVRLAAEGAAVAACDLDGAAAQETVQLLGGPGSEKGAPSGAHAAFQAD 73
Query: 234 VSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVT 413
VSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVT
Sbjct: 74 VSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVT 133
Query: 414 QAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCN 593
QAAAQALV KVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCN
Sbjct: 134 QAAAQALVSSGCPGSIINISSIIGKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCN 193
Query: 594 SVLPGFIKTPMAQKVPQKVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVEV 773
SVLPGFIKTPMAQKVPQKVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVEV
Sbjct: 194 SVLPGFIKTPMAQKVPQKVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVEV 253
Query: 774 TGGLFM 791
TGGLFM
Sbjct: 254 TGGLFM 259
>ref|XP_001927120.1| PREDICTED: carbonyl reductase family member 4-like [Sus scrofa].
Length = 237
Score = 112 bits (280), Expect = 3e-25
Identities = 79/244 (32%), Positives = 120/244 (49%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQAD 233
V G GIGRAV+ + + L G + G G H A D
Sbjct: 7 VFGGSRGIGRAVARLMAQRGYRLAI----------VARNLQGARAVAGDLGGDHLALSCD 56
Query: 234 VSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVT 413
V++ + + E+++ P + +V+ AGI RD L+R S +D + NL G L
Sbjct: 57 VAKEQDVQSTFEEIEKNL-GPVNFLVNAAGINRDNLLVRTSTEDMLCQLQTNLLGSMLTC 115
Query: 414 QAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCN 593
+AA + ++ K GN GQ+ Y+ASK G++G ++A+A+E+ + +IR N
Sbjct: 116 KAAVKTMIKQQGGSIVNIGSVVGLK-GNPGQSVYSASKGGLVGFSRALAKEVAKKKIRVN 174
Query: 594 SVLPGFIKTPMAQKVPQKVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVEV 773
V PGF+ T M + + ++ L IP+G GDP DVA V FL +S YITG ++ V
Sbjct: 175 VVAPGFVHTDMTKDLKEEHLK---SNIPLGRFGDPLDVAHAVLFLL--ESPYITGHALVV 229
Query: 774 TGGL 785
GGL
Sbjct: 230 DGGL 233
>ref|XP_003357106.1| PREDICTED: 3-hydroxybutyrate dehydrogenase type 2-like isoform 2
[Sus scrofa].
Length = 245
Score = 80.1 bits (196), Expect = 2e-15
Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 6/166 (3%)
Frame = +3
Query: 303 VVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVTQAAAQALVXXXXXXXXXXXXXXX 482
V+ + AG +L E DWD + +N++ ++L+ +A ++
Sbjct: 77 VLFNVAGFVHHGTILDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVAS 136
Query: 483 XKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCNSVLPGFIKTP------MAQKVPQ 644
G + + Y+A+KA VIGLT++VA + + IRCN V PG + TP A+ P+
Sbjct: 137 SIKGVVNRCVYSATKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARPNPE 196
Query: 645 KVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVEVTGG 782
+ L + G E+VA + +LAS++S Y+TG V + GG
Sbjct: 197 EALSDFLKRQKTGRFATAEEVALLCVYLASDESAYVTGNPVVIDGG 242
>ref|XP_003129333.2| PREDICTED: 3-hydroxybutyrate dehydrogenase type 2-like isoform 1
[Sus scrofa].
Length = 245
Score = 80.1 bits (196), Expect = 2e-15
Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 6/166 (3%)
Frame = +3
Query: 303 VVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVTQAAAQALVXXXXXXXXXXXXXXX 482
V+ + AG +L E DWD + +N++ ++L+ +A ++
Sbjct: 77 VLFNVAGFVHHGTILDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVAS 136
Query: 483 XKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCNSVLPGFIKTP------MAQKVPQ 644
G + + Y+A+KA VIGLT++VA + + IRCN V PG + TP A+ P+
Sbjct: 137 SIKGVVNRCVYSATKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARPNPE 196
Query: 645 KVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASVEVTGG 782
+ L + G E+VA + +LAS++S Y+TG V + GG
Sbjct: 197 EALSDFLKRQKTGRFATAEEVALLCVYLASDESAYVTGNPVVIDGG 242
>ref|NP_999184.1| dehydrogenase/reductase SDR family member 4 [Sus scrofa].
Length = 260
Score = 79.3 bits (194), Expect = 3e-15
Identities = 71/246 (28%), Positives = 104/246 (42%), Gaps = 3/246 (1%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQAD 233
VT + GIG A++ RL TV L G G
Sbjct: 19 VTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSV-------TGTVCH 71
Query: 234 VSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVT 413
V +AE RL+ +V + A ++ +E+ WDK++ VN+K L+T
Sbjct: 72 VGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMT 131
Query: 414 QAAAQALVXXXXXXXXXXXXXXXXK-VGNMGQTNYAASKAGVIGLTQAVARELGRYRIRC 590
+A + N+G Y SK ++GLT+ +A EL IR
Sbjct: 132 KAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGP--YNVSKTALLGLTKNLAVELAPRNIRV 189
Query: 591 NSVLPGFIKTPMAQKVPQKVLDK--VVGMIPMGHLGDPEDVADVVAFLASEDSGYITGAS 764
N + PG IKT +Q + K + + + LG+PED A +V+FL SED+ YITG +
Sbjct: 190 NCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSEDASYITGET 249
Query: 765 VEVTGG 782
V V GG
Sbjct: 250 VVVGGG 255
>ref|NP_001177161.1| 2,4-dienoyl-CoA reductase, mitochondrial [Sus scrofa].
Length = 328
Score = 75.9 bits (185), Expect = 3e-14
Identities = 61/249 (24%), Positives = 110/249 (44%), Gaps = 6/249 (2%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHA-AFQA 230
+TG G+GIG+ ++ L + +L E + +G A Q
Sbjct: 57 ITGGGTGIGKRMTTHLSSLGAQCVIA-------SRNIDILKATAEEISSQTGNKVHAIQC 109
Query: 231 DVSEAETARRLLEQVQAYFFRPPSVVVSCAG--ITRDEFLLRMSEDDWDKVIAVNLKGIF 404
DV + + + ++ P V+ + AG I+ E R+S + W + + L G
Sbjct: 110 DVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPSE---RLSPNAWKTITDIVLNGTA 166
Query: 405 LVTQAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRI 584
VT + L+ + G+ A++KAGV +++++A E +Y +
Sbjct: 167 FVTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGM 226
Query: 585 RCNSVLPGFIKT--PMAQKVPQKVLDK-VVGMIPMGHLGDPEDVADVVAFLASEDSGYIT 755
R N + PG IKT ++ P +K ++ IP G LG E++A++ FL S+ + +I
Sbjct: 227 RFNVIQPGPIKTKGAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYASWIN 286
Query: 756 GASVEVTGG 782
GA++ GG
Sbjct: 287 GATIRFDGG 295
>ref|NP_999471.1| peroxisomal multifunctional enzyme type 2 [Sus scrofa].
Length = 737
Score = 75.5 bits (184), Expect = 4e-14
Identities = 73/256 (28%), Positives = 111/256 (43%), Gaps = 13/256 (5%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQ-- 227
VTGAG G+GR ++ V LGG KG G+ AA +
Sbjct: 14 VTGAGGGLGRTYALAFAERGASV------------VVNDLGG--DMKGVGKGSLAADKVV 59
Query: 228 -----------ADVSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDK 374
A+ E ++++ F R VVV+ AGI RD R+S++DWD
Sbjct: 60 EEIRRKGGKAVANYDSVEAGEKIVKAALDAFGRI-DVVVNNAGILRDRSFSRISDEDWDM 118
Query: 375 VIAVNLKGIFLVTQAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQA 554
+ V+L+G F+VT+AA + GN GQ NY+A+K G++GL+ +
Sbjct: 119 IQRVHLRGSFMVTRAAWDHMKKQNFGRIIMTSSAAGI-YGNFGQANYSAAKLGLLGLSNS 177
Query: 555 VARELGRYRIRCNSVLPGFIKTPMAQKVPQKVLDKVVGMIPMGHLGDPEDVADVVAFLAS 734
+A E + I CN+V P +P+ +++ + PE VA +V +L
Sbjct: 178 LAVEGKKNNIHCNTVAPVAGSRMTQGFLPEDLIEAL----------KPEYVAPLVLWLCH 227
Query: 735 EDSGYITGASVEVTGG 782
E S G+ EV G
Sbjct: 228 E-SCEENGSVFEVGAG 242
>ref|XP_003135175.1| PREDICTED: 3-hydroxyacyl-CoA dehydrogenase type-2-like isoform 2
[Sus scrofa].
Length = 293
Score = 73.9 bits (180), Expect = 1e-13
Identities = 66/259 (25%), Positives = 109/259 (42%), Gaps = 13/259 (5%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQ-A 230
+TG SG+G A + RL + L G + G AF A
Sbjct: 47 ITGGASGLGLATAERLVGQGASAVL-----------LDLPHSDGEAQAKKLGKSCAFAPA 95
Query: 231 DVSEAETARRLLEQVQAYFFRPPSVVVSCAGI--TRDEFLLRMSE----DDWDKVIAVNL 392
DV+ + + L + F R V V+CAGI + L+ S+ +D+ +V+ VNL
Sbjct: 96 DVTSEKDVQAALTLAKEKFGRV-DVAVNCAGIGVASKTYNLKKSQAHTLEDFQRVLNVNL 154
Query: 393 KGIFLVTQAAAQALVXXXXXXXXXXXXXXXXKV-----GNMGQTNYAASKAGVIGLTQAV 557
G F V + A + G +GQ Y+ASK G++ +T +
Sbjct: 155 TGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASIAAFEGQVGQAAYSASKGGIVSMTLPI 214
Query: 558 ARELGRYRIRCNSVLPGFIKTPMAQKVPQKVLDKVVGMIPM-GHLGDPEDVADVVAFLAS 734
AR+L IR ++ PG TP+ +P KV + + +P LGDP + A + +
Sbjct: 215 ARDLAPMGIRVMTIAPGLFGTPLLNTLPDKVRNFLANQVPFPSRLGDPAEYAHLAQVII- 273
Query: 735 EDSGYITGASVEVTGGLFM 791
++ ++ G + + G + M
Sbjct: 274 -ENPFLNGEVIRLDGAIRM 291
>ref|XP_003135174.1| PREDICTED: 3-hydroxyacyl-CoA dehydrogenase type-2-like isoform 1
[Sus scrofa].
Length = 261
Score = 73.9 bits (180), Expect = 1e-13
Identities = 66/259 (25%), Positives = 109/259 (42%), Gaps = 13/259 (5%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQ-A 230
+TG SG+G A + RL + L G + G AF A
Sbjct: 15 ITGGASGLGLATAERLVGQGASAVL-----------LDLPHSDGEAQAKKLGKSCAFAPA 63
Query: 231 DVSEAETARRLLEQVQAYFFRPPSVVVSCAGI--TRDEFLLRMSE----DDWDKVIAVNL 392
DV+ + + L + F R V V+CAGI + L+ S+ +D+ +V+ VNL
Sbjct: 64 DVTSEKDVQAALTLAKEKFGRV-DVAVNCAGIGVASKTYNLKKSQAHTLEDFQRVLNVNL 122
Query: 393 KGIFLVTQAAAQALVXXXXXXXXXXXXXXXXKV-----GNMGQTNYAASKAGVIGLTQAV 557
G F V + A + G +GQ Y+ASK G++ +T +
Sbjct: 123 TGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASIAAFEGQVGQAAYSASKGGIVSMTLPI 182
Query: 558 ARELGRYRIRCNSVLPGFIKTPMAQKVPQKVLDKVVGMIPM-GHLGDPEDVADVVAFLAS 734
AR+L IR ++ PG TP+ +P KV + + +P LGDP + A + +
Sbjct: 183 ARDLAPMGIRVMTIAPGLFGTPLLNTLPDKVRNFLANQVPFPSRLGDPAEYAHLAQVII- 241
Query: 735 EDSGYITGASVEVTGGLFM 791
++ ++ G + + G + M
Sbjct: 242 -ENPFLNGEVIRLDGAIRM 259
>ref|NP_998992.1| carbonyl reductase [NADPH] 2 [Sus scrofa].
Length = 244
Score = 69.7 bits (169), Expect = 2e-12
Identities = 64/245 (26%), Positives = 104/245 (42%), Gaps = 2/245 (0%)
Frame = +3
Query: 54 VTGAGSGIGRAVSVRLXXXXXXXXXXXXXXXXXQETVQLLGGPGSEKGAPSGAHAAFQAD 233
VTGAG GIGR L Q PG E D
Sbjct: 12 VTGAGKGIGRDTVKALHVSGARVVAVTRTNGDLVSLSQEC--PGIEPVC---------VD 60
Query: 234 VSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVT 413
+ + E R L V P ++V+ A + + L +++ +D+ VNL+ +F V+
Sbjct: 61 LGDWEATERALGGVG-----PVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVS 115
Query: 414 QAAAQALVXXXXXXXXXXXXXXXXKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCN 593
Q A++++ V G Y+++K + LT+++A ELG ++IR N
Sbjct: 116 QIVARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVN 175
Query: 594 SVLPGFIKTPMAQKVPQ--KVLDKVVGMIPMGHLGDPEDVADVVAFLASEDSGYITGASV 767
SV P + T M + V ++ K+ PM + EDV + + FL S+ S +G+S+
Sbjct: 176 SVNPTVVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSI 235
Query: 768 EVTGG 782
V G
Sbjct: 236 FVDAG 240
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,417,652
Number of extensions: 863552
Number of successful extensions: 4174
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4101
Number of HSP's successfully gapped: 16
Length of query: 330
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,879,129
Effective search space: 2051078799
Effective search space used: 2051078799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003474
(992 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 432 e-118
>Sscrofa_Chr07
|| Length = 134764511
Score = 432 bits (218), Expect = e-118
Identities = 221/222 (99%)
Strand = Plus / Minus
Query: 58 caggtgcaggtagcggcatcggccgagcggtcagtgtgcgcttagctgctgagggtgccg 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29755753 caggtgcaggtagcggcatcggccgagcggtcagtgtgcgcttagctgctgagggtgccg 29755694
Query: 118 ccgtggccgcttgcgacctggacggggcagcggcacaggagacggtgcagctgctgggag 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29755693 ccgtggccgcttgcgacctggacggggcagcggcacaggagacggtgcagctgctgggag 29755634
Query: 178 ggccggggagtgagaagggggcacccagcggggcccatgctgccttccaggctgacgtgt 237
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 29755633 ggccggggagtgagaagggggcacccagcggggcccatgctgcctttcaggctgacgtgt 29755574
Query: 238 ccgaggcagagaccgccaggcgcctgctggagcaagtgcagg 279
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29755573 ccgaggcagagaccgccaggcgcctgctggagcaagtgcagg 29755532
Score = 331 bits (167), Expect = 4e-88
Identities = 176/179 (98%)
Strand = Plus / Minus
Query: 777 ggaggtcttttcatgtaactgcctcaaggaccctggactctgctcactcccccaccattc 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29754031 ggaggtcttttcatgtaactgcctcaaggaccctggactctgctcactcccccaccattc 29753972
Query: 837 tgcccggcctcctgctgatgaggactctgagttcccaggctacaaaaggggtggcagtgt 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29753971 tgcccggcctcctgctgatgaggactctgagttcccaggctacaaaaggggtggcagtgt 29753912
Query: 897 atggctccagaatgctgaatatgggaagcaggggtgcttgtgaccccaataaattccaa 955
||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 29753911 atggctcaagaatgctgaatatgggaggcaggggtgcttgtgaccctaataaattccaa 29753853
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 277 aggcctacttttttcgcccgccatctgtcgttgtgtcttgtgcgggcatcaccagggatg 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29755434 aggcctacttttttcgcccgccatctgtcgttgtgtcttgtgcgggcatcaccagggatg 29755375
Query: 337 aatttctgctccgcatgtctgaagatgactgggacaaagtcatagctgtcaacctcaagg 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29755374 aatttctgctccgcatgtctgaagatgactgggacaaagtcatagctgtcaacctcaagg 29755315
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 394 agggcatctttctagtcactcaggctgcagcccaagccctggtgtccagtggctgtcctg 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29755200 agggcatctttctagtcactcaggctgcagcccaagccctggtgtccagtggctgtcctg 29755141
Query: 454 gctccatcatcaacatcagtagcatcatagggaaggt 490
|||||||||||||||||||||||||||||||||||||
Sbjct: 29755140 gctccatcatcaacatcagtagcatcatagggaaggt 29755104
Score = 174 bits (88), Expect = 6e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 574 gatacaggatccgctgtaactctgtcctcccagggttcattaaaacacccatggcacaga 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29754806 gatacaggatccgctgtaactctgtcctcccagggttcattaaaacacccatggcacaga 29754747
Query: 634 aagtgccacagaaagtgctggacaaggt 661
||||||||||||||||||||||||||||
Sbjct: 29754746 aagtgccacagaaagtgctggacaaggt 29754719
Score = 174 bits (88), Expect = 6e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 487 aggtgggaaacatgggacagacaaactacgcagcatccaaggctggagtgattgggctga 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29755005 aggtgggaaacatgggacagacaaactacgcagcatccaaggctggagtgattgggctga 29754946
Query: 547 cccaggctgtagcccgggagctcggacg 574
||||||||||||||||||||||||||||
Sbjct: 29754945 cccaggctgtagcccgggagctcggacg 29754918
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 702 gatgtggccgatgtggtcgcgttcttggcatctgaggacagtggatacatcacaggggca 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29754300 gatgtggccgatgtggtcgcgttcttggcatctgaggacagtggatacatcacaggggca 29754241
Query: 762 tcagtcgaagtcactgg 778
|||||||||||||||||
Sbjct: 29754240 tcagtcgaagtcactgg 29754224
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 2 tgcgcggctcaccatggcgtctcagctccggctccgctccgctctggccctggtcacagg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29755996 tgcgcggctcaccatggcgtctcagctccggctccgctccgctctggccctggtcacagg 29755937
Query: 62 t 62
|
Sbjct: 29755936 t 29755936
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 658 aggtggttggaatgatcccgatgggacatctgggggaccctgagg 702
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29754518 aggtggttggaatgatcccgatgggacatctgggggaccctgagg 29754474
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,466,402
Number of extensions: 162
Number of successful extensions: 162
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 9
Length of query: 992
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 971
Effective length of database: 2,808,413,156
Effective search space: 2726969174476
Effective search space used: 2726969174476
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)