Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003476
(1199 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776429.1| caveolin-1 [Bos taurus]. 368 e-102
Alignment gi|NP_001040023.1| caveolin-3 [Bos taurus]. 219 3e-57
Alignment gi|NP_001007809.1| caveolin-2 [Bos taurus]. 100 2e-21
>ref|NP_776429.1| caveolin-1 [Bos taurus].
Length = 178
Score = 368 bits (945), Expect = e-102
Identities = 177/178 (99%), Positives = 177/178 (99%)
Frame = +3
Query: 45 MSGGKYVDSEGHLYTVPIREQGNIYKPNNKAMAEEMNEKQVYDAHTKEIDLVNRDPKHLN 224
MSGGKYVDSEGHLYTVPIREQGNIYKPNNKAMAEEMNEKQVYDAHTKEIDLVNRDPKHLN
Sbjct: 1 MSGGKYVDSEGHLYTVPIREQGNIYKPNNKAMAEEMNEKQVYDAHTKEIDLVNRDPKHLN 60
Query: 225 DDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFA 404
DDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFA
Sbjct: 61 DDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFA 120
Query: 405 ILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRINMQKEI 578
ILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRIN QKEI
Sbjct: 121 ILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRINTQKEI 178
>ref|NP_001040023.1| caveolin-3 [Bos taurus].
Length = 151
Score = 219 bits (559), Expect = 3e-57
Identities = 98/150 (65%), Positives = 126/150 (84%), Gaps = 3/150 (2%)
Frame = +3
Query: 138 MAEEMNEKQ---VYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKAS 308
MAEE + + V D H KEIDLVNRDPK++N+D+VK+DFEDVIAEP GT+SFDG+WK S
Sbjct: 2 MAEEHTDLEAQIVKDIHFKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKVS 61
Query: 309 FTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVY 488
+TTFTV+KYW YRLLS L G+P+AL+WG FA +SF HIWAVVPCIKS+LIEIQCIS +Y
Sbjct: 62 YTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHIY 121
Query: 489 SIYVHTFCDPLFEAIGKIFSNIRINMQKEI 578
S+ + TFC+PLF A+G++ SNI++ ++KE+
Sbjct: 122 SLCIRTFCNPLFAALGQVCSNIKVMLRKEV 151
>ref|NP_001007809.1| caveolin-2 [Bos taurus].
Length = 162
Score = 100 bits (250), Expect = 2e-21
Identities = 48/125 (38%), Positives = 73/125 (58%)
Frame = +3
Query: 201 NRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMA 380
+RDP LN + K+ FEDVIAEP THSFD +W S F ++KY Y+ L+ IP+A
Sbjct: 39 DRDPHRLNSHL-KVGFEDVIAEPVSTHSFDKVWICSHALFEMSKYVIYKFLTVFLAIPLA 97
Query: 381 LIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRI 560
GI FA LS LHIW ++P +K+ L+ + + ++ PL +IG+ FS++ +
Sbjct: 98 FAAGILFATLSCLHIWIIMPFVKTCLMVLPSVQTIWKSVTDVVIAPLCTSIGRSFSSVSL 157
Query: 561 NMQKE 575
+ +
Sbjct: 158 QLSHD 162
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,348,834
Number of extensions: 925361
Number of successful extensions: 2307
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2301
Number of HSP's successfully gapped: 3
Length of query: 399
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 295
Effective length of database: 14,240,222
Effective search space: 4200865490
Effective search space used: 4200865490
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003476
(1199 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003296.1| caveolin-1 [Canis lupus familiaris]. 365 e-101
Alignment gi|XP_541786.2| PREDICTED: similar to caveolin 3 [Canis familia... 220 2e-57
Alignment gi|NP_001010997.2| caveolin-2 [Canis lupus familiaris]. 102 9e-22
>ref|NP_001003296.1| caveolin-1 [Canis lupus familiaris].
Length = 178
Score = 365 bits (937), Expect = e-101
Identities = 174/177 (98%), Positives = 176/177 (99%)
Frame = +3
Query: 45 MSGGKYVDSEGHLYTVPIREQGNIYKPNNKAMAEEMNEKQVYDAHTKEIDLVNRDPKHLN 224
MSGGKYVDSEGHLYTVPIREQGNIYKPNNKAMAEEM+EKQVYDAHTKEIDLVNRDPKHLN
Sbjct: 1 MSGGKYVDSEGHLYTVPIREQGNIYKPNNKAMAEEMSEKQVYDAHTKEIDLVNRDPKHLN 60
Query: 225 DDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFA 404
DDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFA
Sbjct: 61 DDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFA 120
Query: 405 ILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRINMQKE 575
ILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDP FEA+GKIFSNIRINMQKE
Sbjct: 121 ILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPFFEAVGKIFSNIRINMQKE 177
>ref|XP_541786.2| PREDICTED: similar to caveolin 3 [Canis familiaris].
Length = 151
Score = 220 bits (560), Expect = 2e-57
Identities = 99/150 (66%), Positives = 126/150 (84%), Gaps = 3/150 (2%)
Frame = +3
Query: 138 MAEEMNEKQ---VYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKAS 308
MAEE + + V D H KEIDLVNRDPK++N+D+VK+DFEDVIAEP GT+SFDG+WK S
Sbjct: 2 MAEEHTDLEAQIVKDIHFKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKVS 61
Query: 309 FTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVY 488
+TTFTV+KYW YRLLS L G+P+AL+WG FA +SF HIWAVVPCIKS+LIEIQCIS +Y
Sbjct: 62 YTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHIY 121
Query: 489 SIYVHTFCDPLFEAIGKIFSNIRINMQKEI 578
S+ + TFC+PLF A+G+I SNI++ ++KE+
Sbjct: 122 SLCIRTFCNPLFAALGQICSNIKVMLRKEV 151
>ref|NP_001010997.2| caveolin-2 [Canis lupus familiaris].
Length = 162
Score = 102 bits (253), Expect = 9e-22
Identities = 47/125 (37%), Positives = 75/125 (60%)
Frame = +3
Query: 201 NRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMA 380
+RDP+ LN + ++ FEDVIAEP THSFD +W S F V+KY Y+ L+ L +PMA
Sbjct: 39 DRDPRRLNSHL-QVGFEDVIAEPVSTHSFDKVWICSHALFEVSKYVIYKFLTLLLAMPMA 97
Query: 381 LIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRI 560
G+ FA LS LHIW ++P +K+ L+ + + ++ PL ++G+ FS++ +
Sbjct: 98 FAAGVLFATLSCLHIWIIMPFVKTCLMVLPSVQTIWKSVTDAVIAPLCSSVGRSFSSVSL 157
Query: 561 NMQKE 575
+ +
Sbjct: 158 QVSHD 162
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,131,320
Number of extensions: 951295
Number of successful extensions: 2395
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2389
Number of HSP's successfully gapped: 3
Length of query: 399
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 294
Effective length of database: 15,374,224
Effective search space: 4520021856
Effective search space used: 4520021856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003476
(1199 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001744.2| caveolin-1 isoform alpha [Homo sapiens]. 362 e-100
Alignment gi|NP_001166368.1| caveolin-1 isoform beta [Homo sapiens]. 297 1e-80
Alignment gi|NP_001166367.1| caveolin-1 isoform beta [Homo sapiens]. 297 1e-80
Alignment gi|NP_001166366.1| caveolin-1 isoform beta [Homo sapiens]. 297 1e-80
Alignment gi|NP_001225.1| caveolin-3 [Homo sapiens]. 218 1e-56
Alignment gi|NP_203123.1| caveolin-3 [Homo sapiens]. 218 1e-56
Alignment gi|NP_001193676.1| caveolin-2 isoform b [Homo sapiens]. 102 5e-22
Alignment gi|NP_001224.1| caveolin-2 isoform a [Homo sapiens]. 102 5e-22
Alignment gi|NP_001193677.1| caveolin-2 isoform d [Homo sapiens]. 58 2e-08
>ref|NP_001744.2| caveolin-1 isoform alpha [Homo sapiens].
Length = 178
Score = 362 bits (928), Expect = e-100
Identities = 171/178 (96%), Positives = 177/178 (99%)
Frame = +3
Query: 45 MSGGKYVDSEGHLYTVPIREQGNIYKPNNKAMAEEMNEKQVYDAHTKEIDLVNRDPKHLN 224
MSGGKYVDSEGHLYTVPIREQGNIYKPNNKAMA+E++EKQVYDAHTKEIDLVNRDPKHLN
Sbjct: 1 MSGGKYVDSEGHLYTVPIREQGNIYKPNNKAMADELSEKQVYDAHTKEIDLVNRDPKHLN 60
Query: 225 DDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFA 404
DDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFA
Sbjct: 61 DDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFA 120
Query: 405 ILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRINMQKEI 578
ILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHT CDPLFEA+GKIFSN+RIN+QKEI
Sbjct: 121 ILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTVCDPLFEAVGKIFSNVRINLQKEI 178
>ref|NP_001166368.1| caveolin-1 isoform beta [Homo sapiens].
Length = 147
Score = 297 bits (760), Expect = 1e-80
Identities = 140/147 (95%), Positives = 146/147 (99%)
Frame = +3
Query: 138 MAEEMNEKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTT 317
MA+E++EKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTT
Sbjct: 1 MADELSEKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTT 60
Query: 318 FTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIY 497
FTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIY
Sbjct: 61 FTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIY 120
Query: 498 VHTFCDPLFEAIGKIFSNIRINMQKEI 578
VHT CDPLFEA+GKIFSN+RIN+QKEI
Sbjct: 121 VHTVCDPLFEAVGKIFSNVRINLQKEI 147
>ref|NP_001166367.1| caveolin-1 isoform beta [Homo sapiens].
Length = 147
Score = 297 bits (760), Expect = 1e-80
Identities = 140/147 (95%), Positives = 146/147 (99%)
Frame = +3
Query: 138 MAEEMNEKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTT 317
MA+E++EKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTT
Sbjct: 1 MADELSEKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTT 60
Query: 318 FTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIY 497
FTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIY
Sbjct: 61 FTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIY 120
Query: 498 VHTFCDPLFEAIGKIFSNIRINMQKEI 578
VHT CDPLFEA+GKIFSN+RIN+QKEI
Sbjct: 121 VHTVCDPLFEAVGKIFSNVRINLQKEI 147
>ref|NP_001166366.1| caveolin-1 isoform beta [Homo sapiens].
Length = 147
Score = 297 bits (760), Expect = 1e-80
Identities = 140/147 (95%), Positives = 146/147 (99%)
Frame = +3
Query: 138 MAEEMNEKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTT 317
MA+E++EKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTT
Sbjct: 1 MADELSEKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTT 60
Query: 318 FTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIY 497
FTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIY
Sbjct: 61 FTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIY 120
Query: 498 VHTFCDPLFEAIGKIFSNIRINMQKEI 578
VHT CDPLFEA+GKIFSN+RIN+QKEI
Sbjct: 121 VHTVCDPLFEAVGKIFSNVRINLQKEI 147
>ref|NP_001225.1| caveolin-3 [Homo sapiens].
Length = 151
Score = 218 bits (554), Expect = 1e-56
Identities = 97/150 (64%), Positives = 126/150 (84%), Gaps = 3/150 (2%)
Frame = +3
Query: 138 MAEEMNEKQ---VYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKAS 308
MAEE + + V D H KEIDLVNRDPK++N+D+VK+DFEDVIAEP GT+SFDG+WK S
Sbjct: 2 MAEEHTDLEAQIVKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKVS 61
Query: 309 FTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVY 488
+TTFTV+KYW YRLLS L G+P+AL+WG FA +SF HIWAVVPCIKS+LIEIQCIS +Y
Sbjct: 62 YTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHIY 121
Query: 489 SIYVHTFCDPLFEAIGKIFSNIRINMQKEI 578
S+ + TFC+PLF A+G++ S+I++ ++KE+
Sbjct: 122 SLCIRTFCNPLFAALGQVCSSIKVVLRKEV 151
>ref|NP_203123.1| caveolin-3 [Homo sapiens].
Length = 151
Score = 218 bits (554), Expect = 1e-56
Identities = 97/150 (64%), Positives = 126/150 (84%), Gaps = 3/150 (2%)
Frame = +3
Query: 138 MAEEMNEKQ---VYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKAS 308
MAEE + + V D H KEIDLVNRDPK++N+D+VK+DFEDVIAEP GT+SFDG+WK S
Sbjct: 2 MAEEHTDLEAQIVKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKVS 61
Query: 309 FTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVY 488
+TTFTV+KYW YRLLS L G+P+AL+WG FA +SF HIWAVVPCIKS+LIEIQCIS +Y
Sbjct: 62 YTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHIY 121
Query: 489 SIYVHTFCDPLFEAIGKIFSNIRINMQKEI 578
S+ + TFC+PLF A+G++ S+I++ ++KE+
Sbjct: 122 SLCIRTFCNPLFAALGQVCSSIKVVLRKEV 151
>ref|NP_001193676.1| caveolin-2 isoform b [Homo sapiens].
Length = 149
Score = 102 bits (255), Expect = 5e-22
Identities = 48/125 (38%), Positives = 75/125 (60%)
Frame = +3
Query: 201 NRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMA 380
+RDP LN + K+ FEDVIAEP THSFD +W S F ++KY Y+ L+ IP+A
Sbjct: 26 DRDPHRLNSHL-KLGFEDVIAEPVTTHSFDKVWICSHALFEISKYVMYKFLTVFLAIPLA 84
Query: 381 LIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRI 560
I GI FA LS LHIW ++P +K+ L+ + + ++ PL ++G+ FS++ +
Sbjct: 85 FIAGILFATLSCLHIWILMPFVKTCLMVLPSVQTIWKSVTDVIIAPLCTSVGRCFSSVSL 144
Query: 561 NMQKE 575
+ ++
Sbjct: 145 QLSQD 149
>ref|NP_001224.1| caveolin-2 isoform a [Homo sapiens].
Length = 162
Score = 102 bits (255), Expect = 5e-22
Identities = 48/125 (38%), Positives = 75/125 (60%)
Frame = +3
Query: 201 NRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMA 380
+RDP LN + K+ FEDVIAEP THSFD +W S F ++KY Y+ L+ IP+A
Sbjct: 39 DRDPHRLNSHL-KLGFEDVIAEPVTTHSFDKVWICSHALFEISKYVMYKFLTVFLAIPLA 97
Query: 381 LIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRI 560
I GI FA LS LHIW ++P +K+ L+ + + ++ PL ++G+ FS++ +
Sbjct: 98 FIAGILFATLSCLHIWILMPFVKTCLMVLPSVQTIWKSVTDVIIAPLCTSVGRCFSSVSL 157
Query: 561 NMQKE 575
+ ++
Sbjct: 158 QLSQD 162
>ref|NP_001193677.1| caveolin-2 isoform d [Homo sapiens].
Length = 79
Score = 57.8 bits (138), Expect = 2e-08
Identities = 24/78 (30%), Positives = 45/78 (57%)
Frame = +3
Query: 342 YRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPL 521
Y+ L+ IP+A I GI FA LS LHIW ++P +K+ L+ + + ++ PL
Sbjct: 2 YKFLTVFLAIPLAFIAGILFATLSCLHIWILMPFVKTCLMVLPSVQTIWKSVTDVIIAPL 61
Query: 522 FEAIGKIFSNIRINMQKE 575
++G+ FS++ + + ++
Sbjct: 62 CTSVGRCFSSVSLQLSQD 79
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,464,193
Number of extensions: 949214
Number of successful extensions: 2546
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2537
Number of HSP's successfully gapped: 9
Length of query: 399
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 294
Effective length of database: 14,835,944
Effective search space: 4361767536
Effective search space used: 4361767536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003476
(1199 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031642.1| caveolin-1 isoform 1 [Mus musculus]. 359 3e-99
Alignment gi|NP_001229993.1| caveolin-1 isoform 2 [Mus musculus]. 294 8e-80
Alignment gi|NP_031643.1| caveolin-3 [Mus musculus]. 219 3e-57
Alignment gi|NP_058596.1| caveolin-2 [Mus musculus]. 103 3e-22
>ref|NP_031642.1| caveolin-1 isoform 1 [Mus musculus].
Length = 178
Score = 359 bits (921), Expect = 3e-99
Identities = 171/178 (96%), Positives = 175/178 (98%)
Frame = +3
Query: 45 MSGGKYVDSEGHLYTVPIREQGNIYKPNNKAMAEEMNEKQVYDAHTKEIDLVNRDPKHLN 224
MSGGKYVDSEGHLYTVPIREQGNIYKPNNKAMA+E+ EKQVYDAHTKEIDLVNRDPKHLN
Sbjct: 1 MSGGKYVDSEGHLYTVPIREQGNIYKPNNKAMADEVTEKQVYDAHTKEIDLVNRDPKHLN 60
Query: 225 DDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFA 404
DDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLS +FGIPMALIWGIYFA
Sbjct: 61 DDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSTIFGIPMALIWGIYFA 120
Query: 405 ILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRINMQKEI 578
ILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRI+ QKEI
Sbjct: 121 ILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRISTQKEI 178
>ref|NP_001229993.1| caveolin-1 isoform 2 [Mus musculus].
Length = 147
Score = 294 bits (753), Expect = 8e-80
Identities = 140/147 (95%), Positives = 144/147 (97%)
Frame = +3
Query: 138 MAEEMNEKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTT 317
MA+E+ EKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTT
Sbjct: 1 MADEVTEKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTT 60
Query: 318 FTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIY 497
FTVTKYWFYRLLS +FGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIY
Sbjct: 61 FTVTKYWFYRLLSTIFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIY 120
Query: 498 VHTFCDPLFEAIGKIFSNIRINMQKEI 578
VHTFCDPLFEAIGKIFSNIRI+ QKEI
Sbjct: 121 VHTFCDPLFEAIGKIFSNIRISTQKEI 147
>ref|NP_031643.1| caveolin-3 [Mus musculus].
Length = 151
Score = 219 bits (559), Expect = 3e-57
Identities = 94/143 (65%), Positives = 123/143 (86%)
Frame = +3
Query: 147 EMNEKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTV 326
++ + + D H KEIDLVNRDPK++N+D+VK+DFEDVIAEPEGT+SFDG+WK SFTTFTV
Sbjct: 8 DLEARIIKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPEGTYSFDGVWKVSFTTFTV 67
Query: 327 TKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHT 506
+KYW YRLLS L G+P+AL+WG FA +SF HIWAVVPCIKS+LIEIQCIS +YS+ + T
Sbjct: 68 SKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHIYSLCIRT 127
Query: 507 FCDPLFEAIGKIFSNIRINMQKE 575
FC+PLF A+G++ SNI++ +++E
Sbjct: 128 FCNPLFAALGQVCSNIKVVLRRE 150
>ref|NP_058596.1| caveolin-2 [Mus musculus].
Length = 162
Score = 103 bits (256), Expect = 3e-22
Identities = 52/140 (37%), Positives = 80/140 (57%)
Frame = +3
Query: 156 EKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKY 335
EK V +H +RDP LN + K+ FED+IAEPE THSFD +W S F ++KY
Sbjct: 31 EKYVDSSH-------DRDPHQLNSHL-KLGFEDLIAEPETTHSFDKVWICSHALFEISKY 82
Query: 336 WFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCD 515
Y+ L+ IP+A I GI FA LS LHIW ++P +K+ L+ + + ++
Sbjct: 83 VMYKFLTVFLAIPLAFIAGILFATLSCLHIWILMPFVKTCLMVLPSVQTIWKSVTDVVIG 142
Query: 516 PLFEAIGKIFSNIRINMQKE 575
PL ++G+ FS++ + + +
Sbjct: 143 PLCTSVGRSFSSVSMQLSHD 162
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,676,745
Number of extensions: 810903
Number of successful extensions: 1922
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1920
Number of HSP's successfully gapped: 4
Length of query: 399
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 295
Effective length of database: 12,493,815
Effective search space: 3685675425
Effective search space used: 3685675425
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003476
(1199 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999603.1| caveolin-1 [Sus scrofa]. 370 e-103
Alignment gi|NP_001032226.1| caveolin-3 [Sus scrofa]. 219 3e-57
Alignment gi|XP_003358559.1| PREDICTED: caveolin-3-like [Sus scrofa]. 178 5e-45
Alignment gi|NP_001116563.1| caveolin-2 [Sus scrofa]. 101 9e-22
>ref|NP_999603.1| caveolin-1 [Sus scrofa].
Length = 178
Score = 370 bits (951), Expect = e-103
Identities = 178/178 (100%), Positives = 178/178 (100%)
Frame = +3
Query: 45 MSGGKYVDSEGHLYTVPIREQGNIYKPNNKAMAEEMNEKQVYDAHTKEIDLVNRDPKHLN 224
MSGGKYVDSEGHLYTVPIREQGNIYKPNNKAMAEEMNEKQVYDAHTKEIDLVNRDPKHLN
Sbjct: 1 MSGGKYVDSEGHLYTVPIREQGNIYKPNNKAMAEEMNEKQVYDAHTKEIDLVNRDPKHLN 60
Query: 225 DDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFA 404
DDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFA
Sbjct: 61 DDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFA 120
Query: 405 ILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRINMQKEI 578
ILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRINMQKEI
Sbjct: 121 ILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRINMQKEI 178
>ref|NP_001032226.1| caveolin-3 [Sus scrofa].
Length = 151
Score = 219 bits (557), Expect = 3e-57
Identities = 97/150 (64%), Positives = 126/150 (84%), Gaps = 3/150 (2%)
Frame = +3
Query: 138 MAEEMNEKQ---VYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKAS 308
MAEE + + V D H KEIDLVNRDPK++N+D+VK+DFEDVIAEP GT+SFDG+WK S
Sbjct: 2 MAEERTDLEAQIVKDIHFKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKVS 61
Query: 309 FTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVY 488
+TTFTV+KYW YRLLS L G+P+AL+WG FA +SF HIWAVVPCIKS+LIEIQCIS +Y
Sbjct: 62 YTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHIY 121
Query: 489 SIYVHTFCDPLFEAIGKIFSNIRINMQKEI 578
S+ + TFC+P+F A+G++ SNI++ ++KE+
Sbjct: 122 SLCIRTFCNPVFAALGQVCSNIKVMLRKEV 151
>ref|XP_003358559.1| PREDICTED: caveolin-3-like [Sus scrofa].
Length = 137
Score = 178 bits (452), Expect = 5e-45
Identities = 75/113 (66%), Positives = 98/113 (86%)
Frame = +3
Query: 240 IDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFL 419
+DFEDVIAEP GT+SFDG+WK S+TTFTV+KYW YRLLS L G+P+AL+WG FA +SF
Sbjct: 25 VDFEDVIAEPVGTYSFDGVWKVSYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFC 84
Query: 420 HIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRINMQKEI 578
HIWAVVPCIKS+LIEIQCIS +YS+ + TFC+P+F A+G++ SNI++ ++KE+
Sbjct: 85 HIWAVVPCIKSYLIEIQCISHIYSLCIRTFCNPVFAALGQVCSNIKVMLRKEV 137
>ref|NP_001116563.1| caveolin-2 [Sus scrofa].
Length = 162
Score = 101 bits (251), Expect = 9e-22
Identities = 47/125 (37%), Positives = 73/125 (58%)
Frame = +3
Query: 201 NRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMA 380
+RDP LN ++ K+ FEDVIAEP THSFD +W S F ++KY Y+ L+ IP+A
Sbjct: 39 DRDPHRLNSNL-KVGFEDVIAEPVSTHSFDKVWICSHALFEISKYVIYKFLTVFLAIPLA 97
Query: 381 LIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRI 560
GI FA LS LHIW ++P +K+ L+ + + ++ PL + G+ FS++ +
Sbjct: 98 FAAGILFATLSCLHIWIIIPFVKTCLMVLPSVQTIWKSVTDVVIAPLCTSAGRSFSSVSL 157
Query: 561 NMQKE 575
+ +
Sbjct: 158 QLSHD 162
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,243,739
Number of extensions: 590178
Number of successful extensions: 1522
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1522
Number of HSP's successfully gapped: 4
Length of query: 399
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 298
Effective length of database: 8,829,335
Effective search space: 2631141830
Effective search space used: 2631141830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003476
(1199 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 1729 0.0
Sscrofa_Chr13 60 3e-06
>Sscrofa_Chr18
|| Length = 61220071
Score = 1729 bits (872), Expect = 0.0
Identities = 938/965 (97%), Gaps = 3/965 (0%)
Strand = Plus / Minus
Query: 238 agattgattttgaagatgtgattgcagaaccagaagggacacacagtttcgatggcatct 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31747880 agattgattttgaagatgtgattgcagaaccagaagggacacacagtttcgatggcatct 31747821
Query: 298 ggaaggccagcttcaccaccttcactgtgacgaagtactggttttaccgtttgctgtctg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31747820 ggaaggccagcttcaccaccttcactgtgacgaagtactggttttaccgtttgctgtctg 31747761
Query: 358 ccctctttggcatcccaatggcgctcatctggggcatttactttgccattctctccttcc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31747760 ccctctttggcatcccaatggcgctcatctggggcatttactttgccattctctccttcc 31747701
Query: 418 tgcacatctgggcggttgtaccctgcattaagagtttcctgattgagattcagtgcatca 477
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31747700 tgcacatctgggccgttgtaccctgcattaagagtttcctgattgagattcagtgcatca 31747641
Query: 478 gccgtgtctattccatctacgtccacaccttctgtgacccactctttgaggctattggca 537
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 31747640 gccgtgtctattccatctacgtccacaccttctgtgacccgctctttgaggctattggca 31747581
Query: 538 aaatattcagcaatatccgcatcaacatgcagaaagaaatataagtgacatttcaagggt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31747580 aaatattcagcaatatccgcatcaacatgcagaaagaaatataagtgacatttcaagggt 31747521
Query: 598 ataagtatacccaattcttctttgtcccttttaattttcttggtgccaatttcgagtttc 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31747520 ataagtatacccaattcttctttgtcccttttaattttcttggtgccaatttcgagtttc 31747461
Query: 658 aatttgccagtacagcaacactatatgaatgaattttattgattcagaacaaagaaatca 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31747460 aatttgccagtacagcaacactatatgaatgaattttattgattcagaacaaagaaatca 31747401
Query: 718 tgctcagttttcataactactatttgtctcttctgagctaattcatctatatttggggtg 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31747400 tgctcagttttcataactactatttgtctcttctgagctaattcatctatatttggggtg 31747341
Query: 778 gtgaatttttaaaagtcacttaaaatattttccttacatttggatcattgttttattggc 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31747340 gtgaatttttaaaagtcacttaaaatattttccttacatttggatcattgttttattggc 31747281
Query: 838 tgagatatgaacctactgttgaaagataatttgagggaaatatgaagaactgagaag--- 894
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31747280 tgagatatgaacctactgttgaaagataatttgagggaaatatgaagaactgagaagaaa 31747221
Query: 895 nnnnnnnnnnnnnnnnnccacctcaactgcctattctaaaatgttgatcattttatggta 954
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31747220 aaaaaaaaataaaagaaccacctcaactgcctattctaaaatgttgatcattttatggta 31747161
Query: 955 agggaagaatcccaggctatggccattgaatgtacaggtctgtgggcagttttaagcaaa 1014
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31747160 agggaagaattccaggctatggccattgaatgtacaggtctgtgggcagttttaagcaaa 31747101
Query: 1015 ctcttccctctgaagtgttaacgaattgctgccattcactttaatgatccaataggatca 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31747100 ctcttccctctgaagtgttaacgaattgctgccattcactttaatgatccaataggatca 31747041
Query: 1075 aatattcagttagtaagtataatctgcacatatgactaatgccttactctcttgaaattt 1134
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31747040 aatatcaagttagtaagtataatctgcacatatgactaatgccttactctcttgaaattt 31746981
Query: 1135 aaacctgtgattactttctatgccccagtatttgttatatcagtgatgacacctaagtgc 1194
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 31746980 taacctgtgattactttctatgcccaagtatttgttatatcagtgatgacacctaagtgc 31746921
Query: 1195 cttcc 1199
|||||
Sbjct: 31746920 cttcc 31746916
Score = 331 bits (167), Expect = 5e-88
Identities = 167/167 (100%)
Strand = Plus / Minus
Query: 73 agggacatctctacaccgtccccatccgggaacagggcaacatctacaagcccaacaaca 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31778844 agggacatctctacaccgtccccatccgggaacagggcaacatctacaagcccaacaaca 31778785
Query: 133 aggccatggcagaggaaatgaacgagaagcaagtgtatgacgcgcacaccaaggagatag 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31778784 aggccatggcagaggaaatgaacgagaagcaagtgtatgacgcgcacaccaaggagatag 31778725
Query: 193 acttggtcaaccgcgatcccaagcatctcaacgacgacgttgtcaag 239
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31778724 acttggtcaaccgcgatcccaagcatctcaacgacgacgttgtcaag 31778678
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 1 ccagggaaatctcctcagagccttcatccagccacggggccagaatgtcggggggcaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31780336 ccagggaaatctcctcagagccttcatccagccacggggccagaatgtcggggggcaaat 31780277
Query: 61 acgtagactcagagg 75
|||||||||||||||
Sbjct: 31780276 acgtagactcagagg 31780262
>Sscrofa_Chr13
|| Length = 218635234
Score = 60.0 bits (30), Expect = 3e-06
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 420 cacatctgggcggttgtaccctgcattaagagtttcctgattgagattcagtgcatcagc 479
|||||||||||||| || || ||||| ||||| | |||||| ||||| ||||||||||||
Sbjct: 72412013 cacatctgggcggtggtgccatgcatcaagagctacctgatcgagatccagtgcatcagc 72412072
Query: 480 cgtgtctattccatctacgtccacaccttctgtgacccactctttg 525
| | |||| || ||| | ||| ||||||||| ||||| ||||||
Sbjct: 72412073 catatctactcactctgcatccgcaccttctgcaacccagtctttg 72412118
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,794,040
Number of extensions: 323
Number of successful extensions: 323
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 5
Length of query: 1199
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1178
Effective length of database: 2,808,413,156
Effective search space: 3308310697768
Effective search space used: 3308310697768
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)