Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003480
(1033 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039740.1| hypothetical protein LOC524749 [Bos taurus]. 151 1e-36
Alignment gi|NP_001039389.1| hypothetical protein LOC505719 [Bos taurus]. 59 7e-09
>ref|NP_001039740.1| hypothetical protein LOC524749 [Bos taurus].
Length = 630
Score = 151 bits (381), Expect = 1e-36
Identities = 79/109 (72%), Positives = 79/109 (72%)
Frame = +1
Query: 706 GAENRVPEEEEGAAVLPGAVPLCRXXXXXXXXXXXXAQVLAASKERFPGQSVYHIKWIQW 885
GAENRVPEEEEGAAVLPGAVPLC AQVLAASKERFPGQSVYHIKWIQW
Sbjct: 196 GAENRVPEEEEGAAVLPGAVPLC----GEEEVEEEEAQVLAASKERFPGQSVYHIKWIQW 251
Query: 886 KEENTPIITQNENGPCPXXXXXXXXXXXXXXXXPTMMEIITAEQLMEYL 1032
KEENTPIITQNENGPCP P MMEIITAEQLMEYL
Sbjct: 252 KEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAEQLMEYL 300
Score = 127 bits (319), Expect = 2e-29
Identities = 68/123 (55%), Positives = 73/123 (59%)
Frame = +1
Query: 121 MESGPESLQPVEHGVATGPVPETGSPQEGRQDTRLSAGDGPGVWXXXXXXXXXXXXXXXX 300
MESGPESLQP+EHGVA GP P TGSPQEG+Q+TRL+AGDGPGVW
Sbjct: 1 MESGPESLQPLEHGVAAGPAPGTGSPQEGQQETRLAAGDGPGVWAAESSGGKGQGAAAGG 60
Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXKESDLESRAAQKAPLRGQHKVTASPEIAEAGAG 480
KESDLES AAQK P+RGQHKVTASPE AEAGA
Sbjct: 61 RSLSDSASPAGSPQVLVPCSSLPRLDLKESDLESPAAQKEPVRGQHKVTASPETAEAGAD 120
Query: 481 HGL 489
HGL
Sbjct: 121 HGL 123
>ref|NP_001039389.1| hypothetical protein LOC505719 [Bos taurus].
Length = 469
Score = 58.9 bits (141), Expect = 7e-09
Identities = 32/109 (29%), Positives = 47/109 (43%)
Frame = +1
Query: 706 GAENRVPEEEEGAAVLPGAVPLCRXXXXXXXXXXXXAQVLAASKERFPGQSVYHIKWIQW 885
G +N + ++ PG R ++ + + R P Y +KWI W
Sbjct: 62 GQDNFESPPPDASSSQPGPARETRPETETAGACSRLQELPQSPRARQPELDFYCVKWIPW 121
Query: 886 KEENTPIITQNENGPCPXXXXXXXXXXXXXXXXPTMMEIITAEQLMEYL 1032
K E TPIITQ+ NGPCP P E+IT+++LM +L
Sbjct: 122 KGEQTPIITQSANGPCPLIAIANILFLQWKVKLPPQKEVITSDELMAHL 170
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,364,295
Number of extensions: 815293
Number of successful extensions: 3764
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3755
Number of HSP's successfully gapped: 4
Length of query: 344
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,273,310
Effective search space: 3439867710
Effective search space used: 3439867710
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003480
(1033 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544702.2| PREDICTED: similar to Y55F3AM.9 [Canis familiar... 143 3e-34
Alignment gi|XP_540306.1| PREDICTED: similar to Y55F3AM.9 [Canis familiar... 59 1e-08
>ref|XP_544702.2| PREDICTED: similar to Y55F3AM.9 [Canis familiaris].
Length = 619
Score = 143 bits (360), Expect = 3e-34
Identities = 81/149 (54%), Positives = 85/149 (57%)
Frame = +1
Query: 40 VPLSWRPWRCLRRTHRGFFRARGGQLGMESGPESLQPVEHGVATGPVPETGSPQEGRQDT 219
VPLSWRP R LRRT RG FRARG +LGMESGP SLQP+EHGVA P P TGSPQEGR +T
Sbjct: 45 VPLSWRPRRWLRRTRRGLFRARGWRLGMESGPGSLQPLEHGVAAAPAPGTGSPQEGRPET 104
Query: 220 RLSAGDGPGVWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKESDLE 399
RL+AGDGPGVW KE D E
Sbjct: 105 RLAAGDGPGVWAAESSGGNGQGAAAAGRSLLDSVSPAGSPRVPGPCSSCPGLDLKEGDPE 164
Query: 400 SRAAQKAPLRGQHKVTASPEIAEAGAGHG 486
S AAQ P RGQHKVTAS E AEAGA G
Sbjct: 165 SPAAQTTPPRGQHKVTAS-ETAEAGADQG 192
Score = 131 bits (330), Expect = 9e-31
Identities = 69/98 (70%), Positives = 69/98 (70%)
Frame = +1
Query: 739 GAAVLPGAVPLCRXXXXXXXXXXXXAQVLAASKERFPGQSVYHIKWIQWKEENTPIITQN 918
GAAVLPGAVPLCR AQVLAASKERFPGQSVYHIKWIQWKEENTPIITQN
Sbjct: 204 GAAVLPGAVPLCREEEEEEGEE---AQVLAASKERFPGQSVYHIKWIQWKEENTPIITQN 260
Query: 919 ENGPCPXXXXXXXXXXXXXXXXPTMMEIITAEQLMEYL 1032
ENGPCP P MMEIITAEQLMEYL
Sbjct: 261 ENGPCPLLAILNVLLLAWKVKLPPMMEIITAEQLMEYL 298
>ref|XP_540306.1| PREDICTED: similar to Y55F3AM.9 [Canis familiaris].
Length = 462
Score = 58.5 bits (140), Expect = 1e-08
Identities = 27/66 (40%), Positives = 35/66 (53%)
Frame = +1
Query: 835 KERFPGQSVYHIKWIQWKEENTPIITQNENGPCPXXXXXXXXXXXXXXXXPTMMEIITAE 1014
+ R P Y +KWI WK E TPIITQ+ NGPCP P E+IT++
Sbjct: 102 RARQPELDFYCVKWIPWKGERTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSD 161
Query: 1015 QLMEYL 1032
+LM +L
Sbjct: 162 ELMAHL 167
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,577,231
Number of extensions: 810689
Number of successful extensions: 3646
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3627
Number of HSP's successfully gapped: 3
Length of query: 344
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 240
Effective length of database: 15,407,560
Effective search space: 3697814400
Effective search space used: 3697814400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003480
(1033 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035543.1| hypothetical protein LOC54629 isoform b [Hom... 152 5e-37
Alignment gi|NP_001035540.1| hypothetical protein LOC54629 isoform a [Hom... 152 5e-37
Alignment gi|NP_001156731.1| hypothetical protein LOC55793 isoform 4 [Hom... 59 7e-09
Alignment gi|NP_001156730.1| hypothetical protein LOC55793 isoform 3 [Hom... 59 7e-09
Alignment gi|NP_060849.2| hypothetical protein LOC55793 isoform 1 [Homo s... 59 7e-09
>ref|NP_001035543.1| hypothetical protein LOC54629 isoform b [Homo sapiens].
Length = 620
Score = 152 bits (384), Expect = 5e-37
Identities = 79/109 (72%), Positives = 80/109 (73%)
Frame = +1
Query: 706 GAENRVPEEEEGAAVLPGAVPLCRXXXXXXXXXXXXAQVLAASKERFPGQSVYHIKWIQW 885
GAENRVPEEEEGAAVLPGAVPLC+ AQVLAASKERFPGQSVYHIKWIQW
Sbjct: 196 GAENRVPEEEEGAAVLPGAVPLCKEEEGEET-----AQVLAASKERFPGQSVYHIKWIQW 250
Query: 886 KEENTPIITQNENGPCPXXXXXXXXXXXXXXXXPTMMEIITAEQLMEYL 1032
KEENTPIITQNENGPCP P MMEIITAEQLMEYL
Sbjct: 251 KEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAEQLMEYL 299
Score = 106 bits (264), Expect = 4e-23
Identities = 60/123 (48%), Positives = 66/123 (53%)
Frame = +1
Query: 121 MESGPESLQPVEHGVATGPVPETGSPQEGRQDTRLSAGDGPGVWXXXXXXXXXXXXXXXX 300
MES PESLQP+EHGVA GP TGS QEG Q+TRL+AGDGPGVW
Sbjct: 1 MESSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAAR 60
Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXKESDLESRAAQKAPLRGQHKVTASPEIAEAGAG 480
K+S LES AA +APLRGQ+KVTASPE A AG G
Sbjct: 61 RSLPDSASPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAGVG 120
Query: 481 HGL 489
H L
Sbjct: 121 HEL 123
>ref|NP_001035540.1| hypothetical protein LOC54629 isoform a [Homo sapiens].
Length = 621
Score = 152 bits (384), Expect = 5e-37
Identities = 79/109 (72%), Positives = 80/109 (73%)
Frame = +1
Query: 706 GAENRVPEEEEGAAVLPGAVPLCRXXXXXXXXXXXXAQVLAASKERFPGQSVYHIKWIQW 885
GAENRVPEEEEGAAVLPGAVPLC+ AQVLAASKERFPGQSVYHIKWIQW
Sbjct: 196 GAENRVPEEEEGAAVLPGAVPLCKEEEGEET-----AQVLAASKERFPGQSVYHIKWIQW 250
Query: 886 KEENTPIITQNENGPCPXXXXXXXXXXXXXXXXPTMMEIITAEQLMEYL 1032
KEENTPIITQNENGPCP P MMEIITAEQLMEYL
Sbjct: 251 KEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAEQLMEYL 299
Score = 106 bits (264), Expect = 4e-23
Identities = 60/123 (48%), Positives = 66/123 (53%)
Frame = +1
Query: 121 MESGPESLQPVEHGVATGPVPETGSPQEGRQDTRLSAGDGPGVWXXXXXXXXXXXXXXXX 300
MES PESLQP+EHGVA GP TGS QEG Q+TRL+AGDGPGVW
Sbjct: 1 MESSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAAR 60
Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXKESDLESRAAQKAPLRGQHKVTASPEIAEAGAG 480
K+S LES AA +APLRGQ+KVTASPE A AG G
Sbjct: 61 RSLPDSASPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAGVG 120
Query: 481 HGL 489
H L
Sbjct: 121 HEL 123
>ref|NP_001156731.1| hypothetical protein LOC55793 isoform 4 [Homo sapiens].
Length = 374
Score = 58.9 bits (141), Expect = 7e-09
Identities = 27/66 (40%), Positives = 35/66 (53%)
Frame = +1
Query: 835 KERFPGQSVYHIKWIQWKEENTPIITQNENGPCPXXXXXXXXXXXXXXXXPTMMEIITAE 1014
+ R P Y +KWI WK E TPIITQ+ NGPCP P E+IT++
Sbjct: 10 RTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSD 69
Query: 1015 QLMEYL 1032
+LM +L
Sbjct: 70 ELMAHL 75
>ref|NP_001156730.1| hypothetical protein LOC55793 isoform 3 [Homo sapiens].
Length = 517
Score = 58.9 bits (141), Expect = 7e-09
Identities = 27/66 (40%), Positives = 35/66 (53%)
Frame = +1
Query: 835 KERFPGQSVYHIKWIQWKEENTPIITQNENGPCPXXXXXXXXXXXXXXXXPTMMEIITAE 1014
+ R P Y +KWI WK E TPIITQ+ NGPCP P E+IT++
Sbjct: 153 RTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSD 212
Query: 1015 QLMEYL 1032
+LM +L
Sbjct: 213 ELMAHL 218
>ref|NP_060849.2| hypothetical protein LOC55793 isoform 1 [Homo sapiens].
Length = 469
Score = 58.9 bits (141), Expect = 7e-09
Identities = 27/66 (40%), Positives = 35/66 (53%)
Frame = +1
Query: 835 KERFPGQSVYHIKWIQWKEENTPIITQNENGPCPXXXXXXXXXXXXXXXXPTMMEIITAE 1014
+ R P Y +KWI WK E TPIITQ+ NGPCP P E+IT++
Sbjct: 105 RTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSD 164
Query: 1015 QLMEYL 1032
+LM +L
Sbjct: 165 ELMAHL 170
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,880,914
Number of extensions: 786025
Number of successful extensions: 3711
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3696
Number of HSP's successfully gapped: 9
Length of query: 344
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,901,872
Effective search space: 3591351152
Effective search space used: 3591351152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003480
(1033 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_766360.2| hypothetical protein LOC235461 [Mus musculus]. 134 1e-31
Alignment gi|NP_955769.1| hypothetical protein LOC75007 isoform 1 [Mus mu... 56 4e-08
Alignment gi|NP_598619.2| hypothetical protein LOC75007 isoform 2 [Mus mu... 56 4e-08
>ref|NP_766360.2| hypothetical protein LOC235461 [Mus musculus].
Length = 601
Score = 134 bits (337), Expect = 1e-31
Identities = 73/110 (66%), Positives = 75/110 (68%), Gaps = 1/110 (0%)
Frame = +1
Query: 706 GAENRVPEE-EEGAAVLPGAVPLCRXXXXXXXXXXXXAQVLAASKERFPGQSVYHIKWIQ 882
GAE RVPE+ EEGAA P A PLC+ AQVLAASKERFPGQSVYHIKWIQ
Sbjct: 174 GAETRVPEDVEEGAAGPPRAAPLCKEEEEDP------AQVLAASKERFPGQSVYHIKWIQ 227
Query: 883 WKEENTPIITQNENGPCPXXXXXXXXXXXXXXXXPTMMEIITAEQLMEYL 1032
WKEENTPIITQNENGPCP P MMEIITAEQLMEYL
Sbjct: 228 WKEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAEQLMEYL 277
>ref|NP_955769.1| hypothetical protein LOC75007 isoform 1 [Mus musculus].
Length = 468
Score = 56.2 bits (134), Expect = 4e-08
Identities = 25/62 (40%), Positives = 33/62 (53%)
Frame = +1
Query: 847 PGQSVYHIKWIQWKEENTPIITQNENGPCPXXXXXXXXXXXXXXXXPTMMEIITAEQLME 1026
P Y +KWI WK E TPIITQ+ NGPCP P E+IT+++L+
Sbjct: 109 PELDFYCVKWIPWKGERTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELLT 168
Query: 1027 YL 1032
+L
Sbjct: 169 HL 170
>ref|NP_598619.2| hypothetical protein LOC75007 isoform 2 [Mus musculus].
Length = 459
Score = 56.2 bits (134), Expect = 4e-08
Identities = 25/62 (40%), Positives = 33/62 (53%)
Frame = +1
Query: 847 PGQSVYHIKWIQWKEENTPIITQNENGPCPXXXXXXXXXXXXXXXXPTMMEIITAEQLME 1026
P Y +KWI WK E TPIITQ+ NGPCP P E+IT+++L+
Sbjct: 109 PELDFYCVKWIPWKGERTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELLT 168
Query: 1027 YL 1032
+L
Sbjct: 169 HL 170
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,634,181
Number of extensions: 652378
Number of successful extensions: 2947
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2929
Number of HSP's successfully gapped: 3
Length of query: 344
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 242
Effective length of database: 12,553,887
Effective search space: 3038040654
Effective search space used: 3038040654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003480
(1033 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929700.1| PREDICTED: protein FAM63A [Sus scrofa]. 59 6e-09
>ref|XP_001929700.1| PREDICTED: protein FAM63A [Sus scrofa].
Length = 469
Score = 58.5 bits (140), Expect = 6e-09
Identities = 27/66 (40%), Positives = 35/66 (53%)
Frame = +1
Query: 835 KERFPGQSVYHIKWIQWKEENTPIITQNENGPCPXXXXXXXXXXXXXXXXPTMMEIITAE 1014
+ R P Y +KWI WK E TPIITQ+ NGPCP P E+IT++
Sbjct: 105 RARQPELDFYCVKWIPWKGERTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSD 164
Query: 1015 QLMEYL 1032
+LM +L
Sbjct: 165 ELMAHL 170
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,178,383
Number of extensions: 566062
Number of successful extensions: 2373
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2364
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 244
Effective length of database: 8,854,232
Effective search space: 2160432608
Effective search space used: 2160432608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003480
(1033 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1536 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 1536 bits (775), Expect = 0.0
Identities = 775/775 (100%)
Strand = Plus / Plus
Query: 1 gtgcttggccgaggccgcgcaagggcgctgtagctgccagtgccgctgtcatggcgtccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125409197 gtgcttggccgaggccgcgcaagggcgctgtagctgccagtgccgctgtcatggcgtccg 125409256
Query: 61 tggcgctgtctgaggagaacccaccgcggtttctttagagcaaggggcgggcagctgggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125409257 tggcgctgtctgaggagaacccaccgcggtttctttagagcaaggggcgggcagctgggt 125409316
Query: 121 atggagagcggccccgaaagcctgcagccggtagaacatggggtggccaccgggccagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125409317 atggagagcggccccgaaagcctgcagccggtagaacatggggtggccaccgggccagtg 125409376
Query: 181 ccagagacaggttctccacaggaagggcgacaggacaccaggctttccgctggggatggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125409377 ccagagacaggttctccacaggaagggcgacaggacaccaggctttccgctggggatggt 125409436
Query: 241 cctggagtatgggcggcggagagcagcggcgggaatgggcagggggcggcggccgccggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125409437 cctggagtatgggcggcggagagcagcggcgggaatgggcagggggcggcggccgccggg 125409496
Query: 301 aggagcctctcggactcggtttctccctccggctctcctccggtccttgtaccctgcagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125409497 aggagcctctcggactcggtttctccctccggctctcctccggtccttgtaccctgcagc 125409556
Query: 361 tccctcccaagtgtggacttgaaggagagcgatttggagagtcgtgctgctcagaaggcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125409557 tccctcccaagtgtggacttgaaggagagcgatttggagagtcgtgctgctcagaaggcg 125409616
Query: 421 cctctgagagggcagcacaaggtgaccgcctccccagagattgccgaggccggagccggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125409617 cctctgagagggcagcacaaggtgaccgcctccccagagattgccgaggccggagccggc 125409676
Query: 481 catgggttgggtccggccggagacgcgggcgcccgccgggatcccgcaggcacctgcggg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125409677 catgggttgggtccggccggagacgcgggcgcccgccgggatcccgcaggcacctgcggg 125409736
Query: 541 gcagggtcgacggccgcgggcttcgaggagcccagcagcggcggcggcctcagcagcagt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125409737 gcagggtcgacggccgcgggcttcgaggagcccagcagcggcggcggcctcagcagcagt 125409796
Query: 601 tgcagcgacccgagtcctcctggggaatcgccgagcctggactccctggaatcgttctct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125409797 tgcagcgacccgagtcctcctggggaatcgccgagcctggactccctggaatcgttctct 125409856
Query: 661 aacctgcattcttttcccagtagctccgagtttaatagtgaggaaggagctgagaacagg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125409857 aacctgcattcttttcccagtagctccgagtttaatagtgaggaaggagctgagaacagg 125409916
Query: 721 gtccccgaggaggaggagggcgcggcggtgttgccgggggctgtgcctctgtgcc 775
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125409917 gtccccgaggaggaggagggcgcggcggtgttgccgggggctgtgcctctgtgcc 125409971
Score = 1332 bits (672), Expect = 0.0
Identities = 672/672 (100%)
Strand = Plus / Plus
Query: 104 ggggcgggcagctgggtatggagagcggccccgaaagcctgcagccggtagaacatgggg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125224381 ggggcgggcagctgggtatggagagcggccccgaaagcctgcagccggtagaacatgggg 125224440
Query: 164 tggccaccgggccagtgccagagacaggttctccacaggaagggcgacaggacaccaggc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125224441 tggccaccgggccagtgccagagacaggttctccacaggaagggcgacaggacaccaggc 125224500
Query: 224 tttccgctggggatggtcctggagtatgggcggcggagagcagcggcgggaatgggcagg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125224501 tttccgctggggatggtcctggagtatgggcggcggagagcagcggcgggaatgggcagg 125224560
Query: 284 gggcggcggccgccgggaggagcctctcggactcggtttctccctccggctctcctccgg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125224561 gggcggcggccgccgggaggagcctctcggactcggtttctccctccggctctcctccgg 125224620
Query: 344 tccttgtaccctgcagctccctcccaagtgtggacttgaaggagagcgatttggagagtc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125224621 tccttgtaccctgcagctccctcccaagtgtggacttgaaggagagcgatttggagagtc 125224680
Query: 404 gtgctgctcagaaggcgcctctgagagggcagcacaaggtgaccgcctccccagagattg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125224681 gtgctgctcagaaggcgcctctgagagggcagcacaaggtgaccgcctccccagagattg 125224740
Query: 464 ccgaggccggagccggccatgggttgggtccggccggagacgcgggcgcccgccgggatc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125224741 ccgaggccggagccggccatgggttgggtccggccggagacgcgggcgcccgccgggatc 125224800
Query: 524 ccgcaggcacctgcggggcagggtcgacggccgcgggcttcgaggagcccagcagcggcg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125224801 ccgcaggcacctgcggggcagggtcgacggccgcgggcttcgaggagcccagcagcggcg 125224860
Query: 584 gcggcctcagcagcagttgcagcgacccgagtcctcctggggaatcgccgagcctggact 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125224861 gcggcctcagcagcagttgcagcgacccgagtcctcctggggaatcgccgagcctggact 125224920
Query: 644 ccctggaatcgttctctaacctgcattcttttcccagtagctccgagtttaatagtgagg 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125224921 ccctggaatcgttctctaacctgcattcttttcccagtagctccgagtttaatagtgagg 125224980
Query: 704 aaggagctgagaacagggtccccgaggaggaggagggcgcggcggtgttgccgggggctg 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125224981 aaggagctgagaacagggtccccgaggaggaggagggcgcggcggtgttgccgggggctg 125225040
Query: 764 tgcctctgtgcc 775
||||||||||||
Sbjct: 125225041 tgcctctgtgcc 125225052
Score = 305 bits (154), Expect = 3e-80
Identities = 163/166 (98%)
Strand = Plus / Plus
Query: 812 cggctcaagtgctggcggcctccaaggaacgcttcccgggacagtctgtctatcacatca 871
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125225104 cggctcaggtgctggcggcctccaaggaacgcttcccgggacagtctgtctatcacatca 125225163
Query: 872 agtggatccagtggaaagaggagaacacacccatcatcacccagaatgagaatggcccct 931
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125225164 agtggatccagtggaaggaggagaacacacccatcatcacccagaatgagaatggcccct 125225223
Query: 932 gccctttgctggccatcctcaatgttttgcttctggcctgaaaggt 977
|||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 125225224 gccctttgctggccatcctcaatgttttgcttctggcctggaaggt 125225269
Score = 305 bits (154), Expect = 3e-80
Identities = 163/166 (98%)
Strand = Plus / Plus
Query: 812 cggctcaagtgctggcggcctccaaggaacgcttcccgggacagtctgtctatcacatca 871
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125410023 cggctcaggtgctggcggcctccaaggaacgcttcccgggacagtctgtctatcacatca 125410082
Query: 872 agtggatccagtggaaagaggagaacacacccatcatcacccagaatgagaatggcccct 931
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125410083 agtggatccagtggaaggaggagaacacacccatcatcacccagaatgagaatggcccct 125410142
Query: 932 gccctttgctggccatcctcaatgttttgcttctggcctgaaaggt 977
|||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 125410143 gccctttgctggccatcctcaatgttttgcttctggcctggaaggt 125410188
Score = 111 bits (56), Expect = 8e-22
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 974 aggtgaaacttccaacgatgatggaaatcataactgctgaacagctgatggaatatttag 1033
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125298217 aggtgaaacttccaccgatgatggaaatcataactgctgaacagctgatggaatatttag 125298276
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,742,709
Number of extensions: 195
Number of successful extensions: 195
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 5
Length of query: 1033
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1012
Effective length of database: 2,808,413,156
Effective search space: 2842114113872
Effective search space used: 2842114113872
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)