Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003486
(2248 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002697347.1| PREDICTED: exportin 5 [Bos taurus]. 806 0.0
Alignment gi|XP_001790589.1| PREDICTED: exportin 5 [Bos taurus]. 806 0.0
>ref|XP_002697347.1| PREDICTED: exportin 5 [Bos taurus].
Length = 1118
Score = 806 bits (2081), Expect = 0.0
Identities = 395/444 (88%), Positives = 423/444 (95%), Gaps = 1/444 (0%)
Frame = +3
Query: 3 FRNPCTEQVLKLLDNLLALIRTHNSLYAPEMLAKLGEPFSKALDMIDAEKSTILGLPQPL 182
FRNPCTEQ+LKLLDNLLALIRTHN+LYAPEMLAK+ EPF++ALDM++ EKS ILGLPQPL
Sbjct: 676 FRNPCTEQILKLLDNLLALIRTHNTLYAPEMLAKMAEPFTRALDMLEVEKSAILGLPQPL 735
Query: 183 LDLNDSPVYKTILEKMQRFFCTLYENCFHILGKAGPSMQQDFYTVEQLSTQLLSSAFVNL 362
L+LNDSPVYKT+LE+MQRFFCTLYENCFHILGKAGPSMQQDFYTVE L+TQLLSSAFVNL
Sbjct: 736 LELNDSPVYKTVLERMQRFFCTLYENCFHILGKAGPSMQQDFYTVEHLATQLLSSAFVNL 795
Query: 363 DNLPDYRLRPLLRVFVKPLVLACTPEYYESLVSPIVGPLFTYLHMRLSQKWQVINQRSML 542
+N+PDYRLRP+LRVFVKPLVL C PE+YE+LVSPI+GPLFTYLH+RLSQKWQVINQRS+L
Sbjct: 796 NNIPDYRLRPMLRVFVKPLVLFCPPEHYEALVSPILGPLFTYLHVRLSQKWQVINQRSLL 855
Query: 543 C-EDETTDENPESQEMLEEQLVRMLTREVVDLITVCCVSKKGADHTATPAADGEDEEMMA 719
C EDETTDENPESQEMLEEQLVRMLTREV+DLITVCCVSKKGADHTA P ADG+DEEMMA
Sbjct: 856 CGEDETTDENPESQEMLEEQLVRMLTREVMDLITVCCVSKKGADHTAAPPADGDDEEMMA 915
Query: 720 TEVATPATAELTDLGKCLTKHEDVCTALLILAFNSLAWKDTLSCQRTTTQLCWPLLKQVL 899
TEVA A AELTDLGKCL KHEDVCTALLI AFNSLAWKDTLSCQRTTTQLCWPLLKQVL
Sbjct: 916 TEVAPSAMAELTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTTQLCWPLLKQVL 975
Query: 900 SGTLLAEAVTWLFTSVLKGLQTHGQHDGCMASLVHLAFQTYEALRPRYVEIRAVMEQIPD 1079
SGTLLA+AVTWLFTSVLKGLQTHGQHDGCMASLVHLAFQ YEALRPRY+EIRAVMEQIP+
Sbjct: 976 SGTLLADAVTWLFTSVLKGLQTHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPE 1035
Query: 1080 IQKESLDQFDCKLLNPSLQKAADKRRKDQFKRLIAGCIGKPLGEQFRKEVHIKNLPSLFK 1259
IQK+ LDQFDCKLLNPSLQK ADKRRKDQFKRLIAGCIGKPLGEQFRKEVHIKNLPSLFK
Sbjct: 1036 IQKDCLDQFDCKLLNPSLQKVADKRRKDQFKRLIAGCIGKPLGEQFRKEVHIKNLPSLFK 1095
Query: 1260 KTKPTHDSDALDNDEGGLATIFEP 1331
K KP ++DALD +EGGLATIFEP
Sbjct: 1096 KPKPMPETDALD-EEGGLATIFEP 1118
>ref|XP_001790589.1| PREDICTED: exportin 5 [Bos taurus].
Length = 1118
Score = 806 bits (2081), Expect = 0.0
Identities = 395/444 (88%), Positives = 423/444 (95%), Gaps = 1/444 (0%)
Frame = +3
Query: 3 FRNPCTEQVLKLLDNLLALIRTHNSLYAPEMLAKLGEPFSKALDMIDAEKSTILGLPQPL 182
FRNPCTEQ+LKLLDNLLALIRTHN+LYAPEMLAK+ EPF++ALDM++ EKS ILGLPQPL
Sbjct: 676 FRNPCTEQILKLLDNLLALIRTHNTLYAPEMLAKMAEPFTRALDMLEVEKSAILGLPQPL 735
Query: 183 LDLNDSPVYKTILEKMQRFFCTLYENCFHILGKAGPSMQQDFYTVEQLSTQLLSSAFVNL 362
L+LNDSPVYKT+LE+MQRFFCTLYENCFHILGKAGPSMQQDFYTVE L+TQLLSSAFVNL
Sbjct: 736 LELNDSPVYKTVLERMQRFFCTLYENCFHILGKAGPSMQQDFYTVEHLATQLLSSAFVNL 795
Query: 363 DNLPDYRLRPLLRVFVKPLVLACTPEYYESLVSPIVGPLFTYLHMRLSQKWQVINQRSML 542
+N+PDYRLRP+LRVFVKPLVL C PE+YE+LVSPI+GPLFTYLH+RLSQKWQVINQRS+L
Sbjct: 796 NNIPDYRLRPMLRVFVKPLVLFCPPEHYEALVSPILGPLFTYLHVRLSQKWQVINQRSLL 855
Query: 543 C-EDETTDENPESQEMLEEQLVRMLTREVVDLITVCCVSKKGADHTATPAADGEDEEMMA 719
C EDETTDENPESQEMLEEQLVRMLTREV+DLITVCCVSKKGADHTA P ADG+DEEMMA
Sbjct: 856 CGEDETTDENPESQEMLEEQLVRMLTREVMDLITVCCVSKKGADHTAAPPADGDDEEMMA 915
Query: 720 TEVATPATAELTDLGKCLTKHEDVCTALLILAFNSLAWKDTLSCQRTTTQLCWPLLKQVL 899
TEVA A AELTDLGKCL KHEDVCTALLI AFNSLAWKDTLSCQRTTTQLCWPLLKQVL
Sbjct: 916 TEVAPSAMAELTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTTQLCWPLLKQVL 975
Query: 900 SGTLLAEAVTWLFTSVLKGLQTHGQHDGCMASLVHLAFQTYEALRPRYVEIRAVMEQIPD 1079
SGTLLA+AVTWLFTSVLKGLQTHGQHDGCMASLVHLAFQ YEALRPRY+EIRAVMEQIP+
Sbjct: 976 SGTLLADAVTWLFTSVLKGLQTHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPE 1035
Query: 1080 IQKESLDQFDCKLLNPSLQKAADKRRKDQFKRLIAGCIGKPLGEQFRKEVHIKNLPSLFK 1259
IQK+ LDQFDCKLLNPSLQK ADKRRKDQFKRLIAGCIGKPLGEQFRKEVHIKNLPSLFK
Sbjct: 1036 IQKDCLDQFDCKLLNPSLQKVADKRRKDQFKRLIAGCIGKPLGEQFRKEVHIKNLPSLFK 1095
Query: 1260 KTKPTHDSDALDNDEGGLATIFEP 1331
K KP ++DALD +EGGLATIFEP
Sbjct: 1096 KPKPMPETDALD-EEGGLATIFEP 1118
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 88,380,056
Number of extensions: 2507405
Number of successful extensions: 9516
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9474
Number of HSP's successfully gapped: 2
Length of query: 749
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 639
Effective length of database: 14,041,694
Effective search space: 8972642466
Effective search space used: 8972642466
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003486
(2248 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852453.1| PREDICTED: similar to exportin 5 isoform 3 [Can... 794 0.0
Alignment gi|XP_532148.2| PREDICTED: similar to exportin 5 isoform 2 [Can... 786 0.0
Alignment gi|XP_865768.1| PREDICTED: similar to exportin 5 isoform 5 [Can... 451 e-126
Alignment gi|XP_865751.1| PREDICTED: similar to exportin 5 isoform 4 [Can... 384 e-106
>ref|XP_852453.1| PREDICTED: similar to exportin 5 isoform 3 [Canis familiaris].
Length = 1200
Score = 794 bits (2051), Expect = 0.0
Identities = 385/444 (86%), Positives = 415/444 (93%), Gaps = 1/444 (0%)
Frame = +3
Query: 3 FRNPCTEQVLKLLDNLLALIRTHNSLYAPEMLAKLGEPFSKALDMIDAEKSTILGLPQPL 182
FRNPCTEQ+LKLLDNLLALIRTHN+LYAPEMLAK+ EPF+KALDM++ EKS ILGLPQPL
Sbjct: 757 FRNPCTEQILKLLDNLLALIRTHNTLYAPEMLAKMAEPFTKALDMLEVEKSAILGLPQPL 816
Query: 183 LDLNDSPVYKTILEKMQRFFCTLYENCFHILGKAGPSMQQDFYTVEQLSTQLLSSAFVNL 362
L+LNDSPVYKT+LE+MQRFFCTLYENCFHILGKAGPSMQQDFYTVE L+TQLLSSAFVNL
Sbjct: 817 LELNDSPVYKTVLERMQRFFCTLYENCFHILGKAGPSMQQDFYTVEHLATQLLSSAFVNL 876
Query: 363 DNLPDYRLRPLLRVFVKPLVLACTPEYYESLVSPIVGPLFTYLHMRLSQKWQVINQRSML 542
+N+PDYRLRP+L + KPLVL C PE+YE+LVSPI+GPLFTYLHMRLSQKWQVINQRS+L
Sbjct: 877 NNIPDYRLRPMLHILSKPLVLFCPPEHYEALVSPILGPLFTYLHMRLSQKWQVINQRSLL 936
Query: 543 C-EDETTDENPESQEMLEEQLVRMLTREVVDLITVCCVSKKGADHTATPAADGEDEEMMA 719
C ED+T DENPESQEMLEEQLVRMLTREV+DLITVCCVSKK ADH P DG+D+EMMA
Sbjct: 937 CGEDDTADENPESQEMLEEQLVRMLTREVMDLITVCCVSKKSADHGTAPPTDGDDDEMMA 996
Query: 720 TEVATPATAELTDLGKCLTKHEDVCTALLILAFNSLAWKDTLSCQRTTTQLCWPLLKQVL 899
TEV AELTDLGKCL KHEDVCTALLI AFNSLAWKDTLSCQRTTTQLCWPLLKQVL
Sbjct: 997 TEVTPSTMAELTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTTQLCWPLLKQVL 1056
Query: 900 SGTLLAEAVTWLFTSVLKGLQTHGQHDGCMASLVHLAFQTYEALRPRYVEIRAVMEQIPD 1079
SGTLLA+AVTWLFTSVLKGLQTHGQHDGCMASLVHLAFQ YEALRPRY+EIRAVMEQIPD
Sbjct: 1057 SGTLLADAVTWLFTSVLKGLQTHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPD 1116
Query: 1080 IQKESLDQFDCKLLNPSLQKAADKRRKDQFKRLIAGCIGKPLGEQFRKEVHIKNLPSLFK 1259
IQK+SLDQFDCKLLNP+LQK ADKRRKDQFKRLIAGCIGKPLGEQFRKEVHIKNLPSLFK
Sbjct: 1117 IQKDSLDQFDCKLLNPTLQKVADKRRKDQFKRLIAGCIGKPLGEQFRKEVHIKNLPSLFK 1176
Query: 1260 KTKPTHDSDALDNDEGGLATIFEP 1331
KTKP +++ LDN+EGGLATIFEP
Sbjct: 1177 KTKPMLETEVLDNEEGGLATIFEP 1200
>ref|XP_532148.2| PREDICTED: similar to exportin 5 isoform 2 [Canis familiaris].
Length = 1211
Score = 786 bits (2029), Expect = 0.0
Identities = 385/455 (84%), Positives = 415/455 (91%), Gaps = 12/455 (2%)
Frame = +3
Query: 3 FRNPCTEQVLKLLDNLLALIRTHNSLYAPEMLAKLGEPFSKALDMIDAEKSTILGLPQPL 182
FRNPCTEQ+LKLLDNLLALIRTHN+LYAPEMLAK+ EPF+KALDM++ EKS ILGLPQPL
Sbjct: 757 FRNPCTEQILKLLDNLLALIRTHNTLYAPEMLAKMAEPFTKALDMLEVEKSAILGLPQPL 816
Query: 183 LDLNDSPVYKTILEKMQRFFCTLYENCFHILGKAGPSMQQDFYTVEQLSTQLLSSAFVNL 362
L+LNDSPVYKT+LE+MQRFFCTLYENCFHILGKAGPSMQQDFYTVE L+TQLLSSAFVNL
Sbjct: 817 LELNDSPVYKTVLERMQRFFCTLYENCFHILGKAGPSMQQDFYTVEHLATQLLSSAFVNL 876
Query: 363 DNLPDYRLRPLLRVFVKPLVLACTPEYYESLVSPIVGPLFTYLHMRLSQKWQVINQRSML 542
+N+PDYRLRP+L + KPLVL C PE+YE+LVSPI+GPLFTYLHMRLSQKWQVINQRS+L
Sbjct: 877 NNIPDYRLRPMLHILSKPLVLFCPPEHYEALVSPILGPLFTYLHMRLSQKWQVINQRSLL 936
Query: 543 C-EDETTDENPESQEMLEEQLVRMLTREVVDLITVCCVSKKGADHTATPAADGE------ 701
C ED+T DENPESQEMLEEQLVRMLTREV+DLITVCCVSKK ADH P DG+
Sbjct: 937 CGEDDTADENPESQEMLEEQLVRMLTREVMDLITVCCVSKKSADHGTAPPTDGDGWSLTF 996
Query: 702 -----DEEMMATEVATPATAELTDLGKCLTKHEDVCTALLILAFNSLAWKDTLSCQRTTT 866
D+EMMATEV AELTDLGKCL KHEDVCTALLI AFNSLAWKDTLSCQRTTT
Sbjct: 997 CSLLSDDEMMATEVTPSTMAELTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTT 1056
Query: 867 QLCWPLLKQVLSGTLLAEAVTWLFTSVLKGLQTHGQHDGCMASLVHLAFQTYEALRPRYV 1046
QLCWPLLKQVLSGTLLA+AVTWLFTSVLKGLQTHGQHDGCMASLVHLAFQ YEALRPRY+
Sbjct: 1057 QLCWPLLKQVLSGTLLADAVTWLFTSVLKGLQTHGQHDGCMASLVHLAFQIYEALRPRYL 1116
Query: 1047 EIRAVMEQIPDIQKESLDQFDCKLLNPSLQKAADKRRKDQFKRLIAGCIGKPLGEQFRKE 1226
EIRAVMEQIPDIQK+SLDQFDCKLLNP+LQK ADKRRKDQFKRLIAGCIGKPLGEQFRKE
Sbjct: 1117 EIRAVMEQIPDIQKDSLDQFDCKLLNPTLQKVADKRRKDQFKRLIAGCIGKPLGEQFRKE 1176
Query: 1227 VHIKNLPSLFKKTKPTHDSDALDNDEGGLATIFEP 1331
VHIKNLPSLFKKTKP +++ LDN+EGGLATIFEP
Sbjct: 1177 VHIKNLPSLFKKTKPMLETEVLDNEEGGLATIFEP 1211
>ref|XP_865768.1| PREDICTED: similar to exportin 5 isoform 5 [Canis familiaris].
Length = 1063
Score = 451 bits (1160), Expect = e-126
Identities = 217/262 (82%), Positives = 239/262 (91%), Gaps = 1/262 (0%)
Frame = +3
Query: 3 FRNPCTEQVLKLLDNLLALIRTHNSLYAPEMLAKLGEPFSKALDMIDAEKSTILGLPQPL 182
FRNPCTEQ+LKLLDNLLALIRTHN+LYAPEMLAK+ EPF+KALDM++ EKS ILGLPQPL
Sbjct: 757 FRNPCTEQILKLLDNLLALIRTHNTLYAPEMLAKMAEPFTKALDMLEVEKSAILGLPQPL 816
Query: 183 LDLNDSPVYKTILEKMQRFFCTLYENCFHILGKAGPSMQQDFYTVEQLSTQLLSSAFVNL 362
L+LNDSPVYKT+LE+MQRFFCTLYENCFHILGKAGPSMQQDFYTVE L+TQLLSSAFVNL
Sbjct: 817 LELNDSPVYKTVLERMQRFFCTLYENCFHILGKAGPSMQQDFYTVEHLATQLLSSAFVNL 876
Query: 363 DNLPDYRLRPLLRVFVKPLVLACTPEYYESLVSPIVGPLFTYLHMRLSQKWQVINQRSML 542
+N+PDYRLRP+L + KPLVL C PE+YE+LVSPI+GPLFTYLHMRLSQKWQVINQRS+L
Sbjct: 877 NNIPDYRLRPMLHILSKPLVLFCPPEHYEALVSPILGPLFTYLHMRLSQKWQVINQRSLL 936
Query: 543 C-EDETTDENPESQEMLEEQLVRMLTREVVDLITVCCVSKKGADHTATPAADGEDEEMMA 719
C ED+T DENPESQEMLEEQLVRMLTREV+DLITVCCVSKK ADH P DG+D+EMMA
Sbjct: 937 CGEDDTADENPESQEMLEEQLVRMLTREVMDLITVCCVSKKSADHGTAPPTDGDDDEMMA 996
Query: 720 TEVATPATAELTDLGKCLTKHE 785
TEV AELTDLGKCL KHE
Sbjct: 997 TEVTPSTMAELTDLGKCLMKHE 1018
Score = 82.8 bits (203), Expect = 1e-15
Identities = 38/45 (84%), Positives = 42/45 (93%)
Frame = +3
Query: 1197 KPLGEQFRKEVHIKNLPSLFKKTKPTHDSDALDNDEGGLATIFEP 1331
KPLGEQFRKEVHIKNLPSLFKKTKP +++ LDN+EGGLATIFEP
Sbjct: 1019 KPLGEQFRKEVHIKNLPSLFKKTKPMLETEVLDNEEGGLATIFEP 1063
>ref|XP_865751.1| PREDICTED: similar to exportin 5 isoform 4 [Canis familiaris].
Length = 207
Score = 384 bits (985), Expect = e-106
Identities = 187/207 (90%), Positives = 195/207 (94%)
Frame = +3
Query: 711 MMATEVATPATAELTDLGKCLTKHEDVCTALLILAFNSLAWKDTLSCQRTTTQLCWPLLK 890
MMATEV AELTDLGKCL KHEDVCTALLI AFNSLAWKDTLSCQRTTTQLCWPLLK
Sbjct: 1 MMATEVTPSTMAELTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTTQLCWPLLK 60
Query: 891 QVLSGTLLAEAVTWLFTSVLKGLQTHGQHDGCMASLVHLAFQTYEALRPRYVEIRAVMEQ 1070
QVLSGTLLA+AVTWLFTSVLKGLQTHGQHDGCMASLVHLAFQ YEALRPRY+EIRAVMEQ
Sbjct: 61 QVLSGTLLADAVTWLFTSVLKGLQTHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQ 120
Query: 1071 IPDIQKESLDQFDCKLLNPSLQKAADKRRKDQFKRLIAGCIGKPLGEQFRKEVHIKNLPS 1250
IPDIQK+SLDQFDCKLLNP+LQK ADKRRKDQFKRLIAGCIGKPLGEQFRKEVHIKNLPS
Sbjct: 121 IPDIQKDSLDQFDCKLLNPTLQKVADKRRKDQFKRLIAGCIGKPLGEQFRKEVHIKNLPS 180
Query: 1251 LFKKTKPTHDSDALDNDEGGLATIFEP 1331
LFKKTKP +++ LDN+EGGLATIFEP
Sbjct: 181 LFKKTKPMLETEVLDNEEGGLATIFEP 207
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 92,052,658
Number of extensions: 2570529
Number of successful extensions: 9608
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9572
Number of HSP's successfully gapped: 5
Length of query: 749
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 639
Effective length of database: 15,207,544
Effective search space: 9717620616
Effective search space used: 9717620616
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003486
(2248 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065801.1| exportin-5 [Homo sapiens]. 801 0.0
>ref|NP_065801.1| exportin-5 [Homo sapiens].
Length = 1204
Score = 801 bits (2068), Expect = 0.0
Identities = 391/444 (88%), Positives = 420/444 (94%), Gaps = 1/444 (0%)
Frame = +3
Query: 3 FRNPCTEQVLKLLDNLLALIRTHNSLYAPEMLAKLGEPFSKALDMIDAEKSTILGLPQPL 182
FRNPCTEQ+LKLLDNLLALIRTHN+LYAPEMLAK+ EPF+KALDM+DAEKS ILGLPQPL
Sbjct: 761 FRNPCTEQILKLLDNLLALIRTHNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQPL 820
Query: 183 LDLNDSPVYKTILEKMQRFFCTLYENCFHILGKAGPSMQQDFYTVEQLSTQLLSSAFVNL 362
L+LNDSPV+KT+LE+MQRFF TLYENCFHILGKAGPSMQQDFYTVE L+TQLLSSAFVNL
Sbjct: 821 LELNDSPVFKTVLERMQRFFSTLYENCFHILGKAGPSMQQDFYTVEDLATQLLSSAFVNL 880
Query: 363 DNLPDYRLRPLLRVFVKPLVLACTPEYYESLVSPIVGPLFTYLHMRLSQKWQVINQRSML 542
+N+PDYRLRP+LRVFVKPLVL C PE+YE+LVSPI+GPLFTYLHMRLSQKWQVINQRS+L
Sbjct: 881 NNIPDYRLRPMLRVFVKPLVLFCPPEHYEALVSPILGPLFTYLHMRLSQKWQVINQRSLL 940
Query: 543 C-EDETTDENPESQEMLEEQLVRMLTREVVDLITVCCVSKKGADHTATPAADGEDEEMMA 719
C EDE DENPESQEMLEEQLVRMLTREV+DLITVCCVSKKGADH++ P ADG+DEEMMA
Sbjct: 941 CGEDEAADENPESQEMLEEQLVRMLTREVMDLITVCCVSKKGADHSSAPPADGDDEEMMA 1000
Query: 720 TEVATPATAELTDLGKCLTKHEDVCTALLILAFNSLAWKDTLSCQRTTTQLCWPLLKQVL 899
TEV A AELTDLGKCL KHEDVCTALLI AFNSLAWKDTLSCQRTT+QLCWPLLKQVL
Sbjct: 1001 TEVTPSAMAELTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVL 1060
Query: 900 SGTLLAEAVTWLFTSVLKGLQTHGQHDGCMASLVHLAFQTYEALRPRYVEIRAVMEQIPD 1079
SGTLLA+AVTWLFTSVLKGLQ HGQHDGCMASLVHLAFQ YEALRPRY+EIRAVMEQIP+
Sbjct: 1061 SGTLLADAVTWLFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPE 1120
Query: 1080 IQKESLDQFDCKLLNPSLQKAADKRRKDQFKRLIAGCIGKPLGEQFRKEVHIKNLPSLFK 1259
IQK+SLDQFDCKLLNPSLQK ADKRRKDQFKRLIAGCIGKPLGEQFRKEVHIKNLPSLFK
Sbjct: 1121 IQKDSLDQFDCKLLNPSLQKVADKRRKDQFKRLIAGCIGKPLGEQFRKEVHIKNLPSLFK 1180
Query: 1260 KTKPTHDSDALDNDEGGLATIFEP 1331
KTKP +++ LDND GGLATIFEP
Sbjct: 1181 KTKPMLETEVLDNDGGGLATIFEP 1204
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 90,560,665
Number of extensions: 2545379
Number of successful extensions: 9303
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9273
Number of HSP's successfully gapped: 1
Length of query: 749
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 639
Effective length of database: 14,671,124
Effective search space: 9374848236
Effective search space used: 9374848236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003486
(2248 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082474.1| exportin-5 [Mus musculus]. 750 0.0
>ref|NP_082474.1| exportin-5 [Mus musculus].
Length = 1204
Score = 750 bits (1936), Expect = 0.0
Identities = 362/444 (81%), Positives = 402/444 (90%), Gaps = 1/444 (0%)
Frame = +3
Query: 3 FRNPCTEQVLKLLDNLLALIRTHNSLYAPEMLAKLGEPFSKALDMIDAEKSTILGLPQPL 182
FRNPCTEQ+L+LLDNLLAL+RTHN+LY PEML K+ EPF+KALD++++EK+ ILGLPQPL
Sbjct: 761 FRNPCTEQILRLLDNLLALVRTHNTLYTPEMLTKMAEPFTKALDIVESEKTAILGLPQPL 820
Query: 183 LDLNDSPVYKTILEKMQRFFCTLYENCFHILGKAGPSMQQDFYTVEQLSTQLLSSAFVNL 362
L+ ND PVY+T LE+MQRFF LYENC+HILGKAGPSMQQDFYTVE L++QLL SAFVNL
Sbjct: 821 LEFNDHPVYRTTLERMQRFFGILYENCYHILGKAGPSMQQDFYTVEDLASQLLGSAFVNL 880
Query: 363 DNLPDYRLRPLLRVFVKPLVLACTPEYYESLVSPIVGPLFTYLHMRLSQKWQVINQRSML 542
+N+PD+RLR +LRVFVKPLVL C E+YE+L+SPI+GPLFTYLHMRLSQKW VINQRS+L
Sbjct: 881 NNIPDFRLRSMLRVFVKPLVLFCPSEHYETLISPILGPLFTYLHMRLSQKWHVINQRSIL 940
Query: 543 C-EDETTDENPESQEMLEEQLVRMLTREVVDLITVCCVSKKGADHTATPAADGEDEEMMA 719
C EDE ++NPESQEMLEEQLVRMLTRE +DLI CCVSKK ADHTA P ADG+DEEMMA
Sbjct: 941 CGEDEIAEDNPESQEMLEEQLVRMLTREAMDLIMACCVSKKTADHTAAPTADGDDEEMMA 1000
Query: 720 TEVATPATAELTDLGKCLTKHEDVCTALLILAFNSLAWKDTLSCQRTTTQLCWPLLKQVL 899
TEVA + ELTDLGKCL KHEDVCTALLI AFNSL WKDTLSCQR TTQLCWPLLKQV+
Sbjct: 1001 TEVAPSSVVELTDLGKCLMKHEDVCTALLITAFNSLTWKDTLSCQRATTQLCWPLLKQVM 1060
Query: 900 SGTLLAEAVTWLFTSVLKGLQTHGQHDGCMASLVHLAFQTYEALRPRYVEIRAVMEQIPD 1079
SGTLLA+AVTWLFTSVLKGLQ HGQHDGCMASLVHLAFQ YEALRPRY+EIRAVMEQIP+
Sbjct: 1061 SGTLLADAVTWLFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPE 1120
Query: 1080 IQKESLDQFDCKLLNPSLQKAADKRRKDQFKRLIAGCIGKPLGEQFRKEVHIKNLPSLFK 1259
I KESLDQFDCKLLNPSLQKAADKRRKD FKRLIAGCIGKPLGEQFRKEVHIKNLP LFK
Sbjct: 1121 INKESLDQFDCKLLNPSLQKAADKRRKDHFKRLIAGCIGKPLGEQFRKEVHIKNLPWLFK 1180
Query: 1260 KTKPTHDSDALDNDEGGLATIFEP 1331
K KP +++ LD++EGGLATIFEP
Sbjct: 1181 KPKPMLETEVLDSEEGGLATIFEP 1204
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 76,621,228
Number of extensions: 2126114
Number of successful extensions: 7664
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7625
Number of HSP's successfully gapped: 1
Length of query: 749
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 640
Effective length of database: 12,343,635
Effective search space: 7899926400
Effective search space used: 7899926400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003486
(2248 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929500.3| PREDICTED: LOW QUALITY PROTEIN: exportin-5 [... 326 4e-89
>ref|XP_001929500.3| PREDICTED: LOW QUALITY PROTEIN: exportin-5 [Sus scrofa].
Length = 875
Score = 326 bits (835), Expect = 4e-89
Identities = 165/176 (93%), Positives = 165/176 (93%), Gaps = 9/176 (5%)
Frame = +3
Query: 3 FRNPCTEQVLKLLDNLLAL---------IRTHNSLYAPEMLAKLGEPFSKALDMIDAEKS 155
FRNPCTEQVLKLLDNLLAL RTHNSLYAPEMLAKLGEPFSKALDMIDAEKS
Sbjct: 683 FRNPCTEQVLKLLDNLLALXAFLFFFFFFRTHNSLYAPEMLAKLGEPFSKALDMIDAEKS 742
Query: 156 TILGLPQPLLDLNDSPVYKTILEKMQRFFCTLYENCFHILGKAGPSMQQDFYTVEQLSTQ 335
TILGLPQPLLDLNDSPVYKTILEKMQRFFCTLYENCFHILGKAGPSMQQDFYTVEQLSTQ
Sbjct: 743 TILGLPQPLLDLNDSPVYKTILEKMQRFFCTLYENCFHILGKAGPSMQQDFYTVEQLSTQ 802
Query: 336 LLSSAFVNLDNLPDYRLRPLLRVFVKPLVLACTPEYYESLVSPIVGPLFTYLHMRL 503
LLSSAFVNLDNLPDYRLRPLLRVFVKPLVLACTPEYYESLVSPIVGPLFTYLHM L
Sbjct: 803 LLSSAFVNLDNLPDYRLRPLLRVFVKPLVLACTPEYYESLVSPIVGPLFTYLHMGL 858
Score = 129 bits (324), Expect(2) = 9e-32
Identities = 78/143 (54%), Positives = 86/143 (60%), Gaps = 25/143 (17%)
Frame = +3
Query: 249 LYENCFHILGKAGPSMQQDFYTVEQLSTQLLSSAFVNLDNLPDYRLRPLLRVFVKPLVLA 428
++ FHILGKAGPSMQQDFYTVEQLSTQLLSSAF PLVLA
Sbjct: 4 IFPYSFHILGKAGPSMQQDFYTVEQLSTQLLSSAF--------------------PLVLA 43
Query: 429 CTPEYYESLVSPIVGPLFTYLHMRLS------------------QKWQVINQ-------R 533
CTPEYYESLVSPIVGPLFTYLHM + ++ V+++
Sbjct: 44 CTPEYYESLVSPIVGPLFTYLHMSSTYIIFVFAEAFPKMANHQPEEHAVVSKCLFSLVDE 103
Query: 534 SMLCEDETTDENPESQEMLEEQL 602
EDETTDENPESQEMLEEQL
Sbjct: 104 LAASEDETTDENPESQEMLEEQL 126
Score = 27.3 bits (59), Expect(2) = 9e-32
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +1
Query: 640 PCAVSQRRVXXXXXXXXRMER 702
PCAVSQRRV RMER
Sbjct: 127 PCAVSQRRVLTTLLLPLRMER 147
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 56,961,061
Number of extensions: 1610479
Number of successful extensions: 5995
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5978
Number of HSP's successfully gapped: 3
Length of query: 749
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 643
Effective length of database: 8,704,850
Effective search space: 5597218550
Effective search space used: 5597218550
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003486
(2248 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 2000 0.0
Sscrofa_Chr15 274 2e-70
>Sscrofa_Chr07
|| Length = 134764511
Score = 2000 bits (1009), Expect = 0.0
Identities = 1042/1054 (98%), Gaps = 1/1054 (0%)
Strand = Plus / Minus
Query: 1196 gaaacccttgggcgagcagttccgaaaagaagttcacattaagaatcttccttcactttt 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44114069 gaaacccttgggcgagcagttccgaaaagaagttcacattaagaatcttccttcactttt 44114010
Query: 1256 cnnnnnnncaaagccaacccatgactcggatgcactggacaacgacgagggcggcctggc 1315
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44114009 caaaaaaacaaagccaacccatgactcggatgcactggacaacgacgagggcggcctggc 44113950
Query: 1316 caccatctttgaaccctgaatcaagctttcaggcatccttctttgacctttattgtcatc 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44113949 caccatctttgaaccctgaatcaagctttcaggcatccttctttgacctttattgtcatc 44113890
Query: 1376 tcttcttcccctttgtagctaatctctaggcccctctccactgcacctcactttccacct 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44113889 tcttcttcccctttgtagctaatctctaggcccctctccactgcacctcactttccacct 44113830
Query: 1436 tcgtcagcctggagagaggtccaggtctggagctggagagagtgggccctgtagtagggc 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44113829 tcgtcagcctggagagaggtccaggtctggagctggagagagtgggccctgtagtagggc 44113770
Query: 1496 cagaagtcattatactaaagtctcaagaaagggaggtagggcttctaccgttctgtctag 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44113769 cagaagtcattatactaaagtctcaagaaagggaggtagggcttctaccgttctgtctag 44113710
Query: 1556 atttcccaggtctctcccattctacttggagttttggcttttccaaaagtgagaagccac 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44113709 atttcccaggtctctcccattctacttggagttttggcttttccaaaagtgagaagccac 44113650
Query: 1616 agcagagtggcccctatccccaagccctctcacccccaggcagccgtatacacctgtgca 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44113649 agcagagtggcccctatccccaagccctctcacccccaggcagccgtatacacctgtgca 44113590
Query: 1676 gagtgacaaccagggggctctgtacctgatgctgtactggctgggcttgcggccagggct 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44113589 gagtgacaaccagggggctctgtacctgatgctgtactggctgggcttgcggccagggct 44113530
Query: 1736 cagccctgaactacttgtgccagagtttctcttggacctttgagaaatcccaccaagccc 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44113529 cagccctgaactacttgtgccagagtttctcttggacctttgagaaatcccaccaagccc 44113470
Query: 1796 ccttgctgctgggctggctgggaaccctccccatcccccaggggtgtatctgggtcaggt 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44113469 ccttgctgctgggctggctgggaaccctccccatcccccaggggtgtatctgggtcaggt 44113410
Query: 1856 gctgagtgaactgaatttggccaattcccactttgttttgagcaagaatctgatgggctc 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44113409 gctgagtgaactgaatttggccaattcccactttgttttgagcaagaatctgatgggctc 44113350
Query: 1916 catggtacaggctaagctccgggcacagtgtcacgatagtaccttcagggaccagggctg 1975
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 44113349 catggtacaggctaagctctgggcacagtgtcacgatagtaccttcagggaccagggctg 44113290
Query: 1976 ggcaggggccgtagtgttctctgatatcccttagagctcacacattttgtccttccgtga 2035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44113289 ggcaggggccgtagtgttctctgatatcccttagagctcacacattttgtccttccgtga 44113230
Query: 2036 atgacccttcagtgtggtttccccagcccccagggtccactcaggcacaagagccacagt 2095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44113229 atgacccttcagtgtggtttccccagcccccagggtccactcaggcacaagagccacagt 44113170
Query: 2096 accctctctagtgtcacgtgatgccgttggcatttaaggataatccagaacaactaggct 2155
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 44113169 accctctctagtgtcacgtgatgccgttggcatttaaggataatccagaccaactaggct 44113110
Query: 2156 acatctgtgacagcagctagcaaagccactggtctcctctcctagctgagtccaggtgcc 2215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44113109 acatctgtgacagcagctagcaaagccactggtctcctctcctagctgagtccaggtgcc 44113050
Query: 2216 ttc-aagtctcatgcttcttcagacccccctggt 2248
||| |||||||||||| ||||||||||||||||
Sbjct: 44113049 ttcaaagtctcatgctctttcagacccccctggt 44113016
Score = 329 bits (166), Expect = 4e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 1031 gcgtcccaggtacgtggagataagagctgtgatggagcagatccctgacattcagaagga 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44114384 gcgtcccaggtacgtggagataagagctgtgatggagcagatccctgacattcagaagga 44114325
Query: 1091 gtctctggaccagtttgactgcaagcttttgaacccctctctgcagaaagcggctgataa 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44114324 gtctctggaccagtttgactgcaagcttttgaacccctctctgcagaaagcggctgataa 44114265
Query: 1151 gcgccggaaggaccaattcaaacgcctgattgctgggtgcatcggg 1196
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44114264 gcgccggaaggaccaattcaaacgcctgattgctgggtgcatcggg 44114219
Score = 274 bits (138), Expect = 2e-70
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 894 gtgctatcggggactctgctggcagaagctgtcacatggctcttcaccagcgtgctgaag 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44114676 gtgctatcggggactctgctggcagaagctgtcacatggctcttcaccagcgtgctgaag 44114617
Query: 954 ggcttacagacacacgggcagcatgacggctgcatggcttccttggtccacctggccttc 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44114616 ggcttacagacacacgggcagcatgacggctgcatggcttccttggtccacctggccttc 44114557
Query: 1014 cagacgtatgaggcgctg 1031
||||||||||||||||||
Sbjct: 44114556 cagacgtatgaggcgctg 44114539
Score = 274 bits (138), Expect = 2e-70
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 262 gtttccacatcctagggaaggcaggcccttccatgcagcaggacttctacaccgtggagc 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44119486 gtttccacatcctagggaaggcaggcccttccatgcagcaggacttctacaccgtggagc 44119427
Query: 322 agctgtccacccagctcctcagctctgcctttgtcaacttggacaatcttcctgactacc 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44119426 agctgtccacccagctcctcagctctgcctttgtcaacttggacaatcttcctgactacc 44119367
Query: 382 gactcagacccttgcttc 399
||||||||||||||||||
Sbjct: 44119366 gactcagacccttgcttc 44119349
Score = 222 bits (112), Expect = 6e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 784 aggatgtttgcacagcgctgttaattctagccttcaactccctcgcctggaaggatactc 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44114927 aggatgtttgcacagcgctgttaattctagccttcaactccctcgcctggaaggatactc 44114868
Query: 844 tgtcctgccagaggaccaccacgcagctctgctggcccctcctcaagcaagt 895
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44114867 tgtcctgccagaggaccaccacgcagctctgctggcccctcctcaagcaagt 44114816
Score = 206 bits (104), Expect = 4e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 63 agaactcacaattctttatatgcaccagaaatgctagccaaactaggagaacctttcagc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44123284 agaactcacaattctttatatgcaccagaaatgctagccaaactaggagaacctttcagc 44123225
Query: 123 aaggctctggatatgattgatgcggaaaaatctactattttagg 166
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44123224 aaggctctggatatgattgatgcggaaaaatctactattttagg 44123181
Score = 198 bits (100), Expect = 9e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 163 taggattacctcaacctctcctggacctgaatgactctcctgtctacaaaacgatcttgg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44120422 taggattacctcaacctctcctggacctgaatgactctcctgtctacaaaacgatcttgg 44120363
Query: 223 aaaaaatgcagcgtttcttctgcaccctctatgaaaactg 262
||||||||||||||||||||||||||||||||||||||||
Sbjct: 44120362 aaaaaatgcagcgtttcttctgcaccctctatgaaaactg 44120323
Score = 196 bits (99), Expect = 4e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 399 cgggtcttcgtgaagcctctggtgctcgcctgtacccccgagtactatgaaagcctggtg 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44118653 cgggtcttcgtgaagcctctggtgctcgcctgtacccccgagtactatgaaagcctggtg 44118594
Query: 459 tcgcccatcgttgggcctcttttcacctacctccacatg 497
|||||||||||||||||||||||||||||||||||||||
Sbjct: 44118593 tcgcccatcgttgggcctcttttcacctacctccacatg 44118555
Score = 190 bits (96), Expect = 2e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 544 gtgaagatgagacgacagatgaaaacccagagtctcaagagatgctggaggaacaactgg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44117547 gtgaagatgagacgacagatgaaaacccagagtctcaagagatgctggaggaacaactgg 44117488
Query: 604 tgaggatgttaacccgagaagtcgtggacctgatca 639
||||||||||||||||||||||||||||||||||||
Sbjct: 44117487 tgaggatgttaacccgagaagtcgtggacctgatca 44117452
Score = 161 bits (81), Expect = 2e-36
Identities = 84/85 (98%)
Strand = Plus / Minus
Query: 702 gatgaagagatgatggccacagaggtagccactccagccacggcagagctcacagacctg 761
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 44115477 gatgaagagatgatggccacagaggtagccactccggccacggcagagctcacagacctg 44115418
Query: 762 ggaaagtgtctgacgaagcacgagg 786
|||||||||||||||||||||||||
Sbjct: 44115417 ggaaagtgtctgacgaagcacgagg 44115393
Score = 127 bits (64), Expect = 3e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 1 tcttccgtaacccctgcacagaacaggttttgaaacttctggacaatttgcttgccctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44127279 tcttccgtaacccctgcacagaacaggttttgaaacttctggacaatttgcttgccctta 44127220
Query: 61 taag 64
||||
Sbjct: 44127219 taag 44127216
Score = 125 bits (63), Expect = 1e-25
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 640 ccgtgtgctgtgtctcaaagaagggtgctgaccacactgctactcccgctgcggatggag 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44116842 ccgtgtgctgtgtctcaaagaagggtgctgaccacactgctactcccgctgcggatggag 44116783
Query: 700 agg 702
|||
Sbjct: 44116782 agg 44116780
Score = 95.6 bits (48), Expect = 1e-16
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 497 gaggctttcccaaaaatggcaagtcatcaaccagaggagcatgctgtg 544
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44118004 gaggctttcccaaaaatggcaagtcatcaaccagaggagcatgctgtg 44117957
>Sscrofa_Chr15
|| Length = 157681621
Score = 274 bits (138), Expect = 2e-70
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 262 gtttccacatcctagggaaggcaggcccttccatgcagcaggacttctacaccgtggagc 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153161226 gtttccacatcctagggaaggcaggcccttccatgcagcaggacttctacaccgtggagc 153161167
Query: 322 agctgtccacccagctcctcagctctgcctttgtcaacttggacaatcttcctgactacc 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153161166 agctgtccacccagctcctcagctctgcctttgtcaacttggacaatcttcctgactacc 153161107
Query: 382 gactcagacccttgcttc 399
||||||||||||||||||
Sbjct: 153161106 gactcagacccttgcttc 153161089
Score = 206 bits (104), Expect = 4e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 63 agaactcacaattctttatatgcaccagaaatgctagccaaactaggagaacctttcagc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153165681 agaactcacaattctttatatgcaccagaaatgctagccaaactaggagaacctttcagc 153165622
Query: 123 aaggctctggatatgattgatgcggaaaaatctactattttagg 166
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153165621 aaggctctggatatgattgatgcggaaaaatctactattttagg 153165578
Score = 198 bits (100), Expect = 9e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 163 taggattacctcaacctctcctggacctgaatgactctcctgtctacaaaacgatcttgg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153162162 taggattacctcaacctctcctggacctgaatgactctcctgtctacaaaacgatcttgg 153162103
Query: 223 aaaaaatgcagcgtttcttctgcaccctctatgaaaactg 262
||||||||||||||||||||||||||||||||||||||||
Sbjct: 153162102 aaaaaatgcagcgtttcttctgcaccctctatgaaaactg 153162063
Score = 194 bits (98), Expect = 1e-46
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 400 gggtcttcgtgaagcctctggtgctcgcctgtacccccgagtactatgaaagcctggtgt 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153160389 gggtcttcgtgaagcctctggtgctcgcctgtacccccgagtactatgaaagcctggtgt 153160330
Query: 460 cgcccatcgttgggcctcttttcacctacctccacatg 497
||||||||||||||||||||||||||||||||||||||
Sbjct: 153160329 cgcccatcgttgggcctcttttcacctacctccacatg 153160292
Score = 111 bits (56), Expect = 2e-21
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 1 tcttccgtaacccctgcacagaacaggttttgaaacttctggacaatttgcttgcc 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153169664 tcttccgtaacccctgcacagaacaggttttgaaacttctggacaatttgcttgcc 153169609
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 65,567,424
Number of extensions: 421
Number of successful extensions: 421
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 18
Length of query: 2248
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2226
Effective length of database: 2,808,408,574
Effective search space: 6251517485724
Effective search space used: 6251517485724
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)