Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003489
(728 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039334.1| V-type proton ATPase subunit F [Bos taurus]. 235 3e-62
Alignment gi|XP_002696815.1| PREDICTED: ATPase, H+ transporting, lysosoma... 221 5e-58
Alignment gi|XP_001252545.2| PREDICTED: ATPase, H+ transporting, lysosoma... 221 5e-58
>ref|NP_001039334.1| V-type proton ATPase subunit F [Bos taurus].
Length = 119
Score = 235 bits (599), Expect = 3e-62
Identities = 117/119 (98%), Positives = 119/119 (100%)
Frame = +3
Query: 75 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRED 254
MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNR+D
Sbjct: 1 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60
Query: 255 IGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDLR 431
IGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRA+GMFTAEDLR
Sbjct: 61 IGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDLR 119
>ref|XP_002696815.1| PREDICTED: ATPase, H+ transporting, lysosomal 14kD, V1 subunit
F-like [Bos taurus].
Length = 213
Score = 221 bits (563), Expect = 5e-58
Identities = 109/118 (92%), Positives = 115/118 (97%)
Frame = +3
Query: 75 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRED 254
MAGRGKLIAVI DEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNR+D
Sbjct: 1 MAGRGKLIAVIRDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60
Query: 255 IGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDL 428
IGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRA+G+F+ ++
Sbjct: 61 IGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRARGLFSPSEM 118
>ref|XP_001252545.2| PREDICTED: ATPase, H+ transporting, lysosomal 14kD, V1 subunit F
[Bos taurus].
Length = 213
Score = 221 bits (563), Expect = 5e-58
Identities = 109/118 (92%), Positives = 115/118 (97%)
Frame = +3
Query: 75 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRED 254
MAGRGKLIAVI DEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNR+D
Sbjct: 1 MAGRGKLIAVIRDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60
Query: 255 IGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDL 428
IGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRA+G+F+ ++
Sbjct: 61 IGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRARGLFSPSEM 118
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 23,967,786
Number of extensions: 627385
Number of successful extensions: 2608
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2594
Number of HSP's successfully gapped: 3
Length of query: 242
Length of database: 17,681,374
Length adjustment: 99
Effective length of query: 143
Effective length of database: 14,405,662
Effective search space: 2060009666
Effective search space used: 2060009666
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003489
(728 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532431.1| PREDICTED: similar to ATPase, H+ transporting, ... 233 1e-61
>ref|XP_532431.1| PREDICTED: similar to ATPase, H+ transporting, V1 subunit F [Canis
familiaris].
Length = 119
Score = 233 bits (595), Expect = 1e-61
Identities = 116/119 (97%), Positives = 118/119 (99%)
Frame = +3
Query: 75 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRED 254
MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNR+D
Sbjct: 1 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60
Query: 255 IGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDLR 431
IGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDA KDSILRRA+GMFTAEDLR
Sbjct: 61 IGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDATKDSILRRARGMFTAEDLR 119
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 24,875,294
Number of extensions: 616030
Number of successful extensions: 2756
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2740
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 142
Effective length of database: 15,540,904
Effective search space: 2206808368
Effective search space used: 2206808368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003489
(728 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004222.2| V-type proton ATPase subunit F isoform 1 [Homo ... 233 1e-61
Alignment gi|NP_001185838.1| V-type proton ATPase subunit F isoform 2 [Ho... 218 3e-57
>ref|NP_004222.2| V-type proton ATPase subunit F isoform 1 [Homo sapiens].
Length = 119
Score = 233 bits (595), Expect = 1e-61
Identities = 116/119 (97%), Positives = 119/119 (100%)
Frame = +3
Query: 75 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRED 254
MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNR+D
Sbjct: 1 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60
Query: 255 IGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDLR 431
IGIILINQYIAEMVRHALDAHQ+SIPAVLEIPSKEHPYDAAKDSILRRA+GMFTAEDLR
Sbjct: 61 IGIILINQYIAEMVRHALDAHQQSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDLR 119
>ref|NP_001185838.1| V-type proton ATPase subunit F isoform 2 [Homo sapiens].
Length = 147
Score = 218 bits (556), Expect = 3e-57
Identities = 116/147 (78%), Positives = 119/147 (80%), Gaps = 28/147 (19%)
Frame = +3
Query: 75 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFR------- 233
MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFR
Sbjct: 1 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRSLGSLPG 60
Query: 234 ---------------------QFLNREDIGIILINQYIAEMVRHALDAHQRSIPAVLEIP 350
QFLNR+DIGIILINQYIAEMVRHALDAHQ+SIPAVLEIP
Sbjct: 61 SVVEANPNQRDPPLWDEIDSRQFLNRDDIGIILINQYIAEMVRHALDAHQQSIPAVLEIP 120
Query: 351 SKEHPYDAAKDSILRRAKGMFTAEDLR 431
SKEHPYDAAKDSILRRA+GMFTAEDLR
Sbjct: 121 SKEHPYDAAKDSILRRARGMFTAEDLR 147
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 24,347,065
Number of extensions: 600974
Number of successful extensions: 2743
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2727
Number of HSP's successfully gapped: 3
Length of query: 242
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 142
Effective length of database: 15,000,764
Effective search space: 2130108488
Effective search space used: 2130108488
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003489
(728 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079657.1| V-type proton ATPase subunit F [Mus musculus]. 236 1e-62
>ref|NP_079657.1| V-type proton ATPase subunit F [Mus musculus].
Length = 119
Score = 236 bits (602), Expect = 1e-62
Identities = 118/119 (99%), Positives = 119/119 (100%)
Frame = +3
Query: 75 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRED 254
MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNR+D
Sbjct: 1 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDD 60
Query: 255 IGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDLR 431
IGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDLR
Sbjct: 61 IGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDLR 119
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 20,505,357
Number of extensions: 498479
Number of successful extensions: 2024
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2003
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 15,617,559
Length adjustment: 98
Effective length of query: 144
Effective length of database: 12,674,031
Effective search space: 1825060464
Effective search space used: 1825060464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003489
(728 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134746.1| PREDICTED: v-type proton ATPase subunit F-li... 237 4e-63
>ref|XP_003134746.1| PREDICTED: v-type proton ATPase subunit F-like [Sus scrofa].
Length = 119
Score = 237 bits (605), Expect = 4e-63
Identities = 119/119 (100%), Positives = 119/119 (100%)
Frame = +3
Query: 75 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRED 254
MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRED
Sbjct: 1 MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRED 60
Query: 255 IGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDLR 431
IGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDLR
Sbjct: 61 IGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDLR 119
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 15,768,444
Number of extensions: 447253
Number of successful extensions: 1708
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1690
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 11,343,932
Length adjustment: 96
Effective length of query: 146
Effective length of database: 8,953,820
Effective search space: 1307257720
Effective search space used: 1307257720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003489
(728 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 906 0.0
Sscrofa_Chr01 139 2e-30
>Sscrofa_Chr18
|| Length = 61220071
Score = 906 bits (457), Expect = 0.0
Identities = 457/457 (100%)
Strand = Plus / Plus
Query: 232 ggcagttcctcaaccgggaggacatcggcatcatcctcatcaaccagtacatcgcagaga 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20888465 ggcagttcctcaaccgggaggacatcggcatcatcctcatcaaccagtacatcgcagaga 20888524
Query: 292 tggtgcggcacgcgctcgacgcccaccagcgctccatcccagccgtcctggagatcccgt 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20888525 tggtgcggcacgcgctcgacgcccaccagcgctccatcccagccgtcctggagatcccgt 20888584
Query: 352 ccaaggagcacccctatgatgctgccaaggactccatcctgcgcagggccaagggcatgt 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20888585 ccaaggagcacccctatgatgctgccaaggactccatcctgcgcagggccaagggcatgt 20888644
Query: 412 tcacggctgaagacctacgctagggggactccccgcagccctgcagcctctccccaggct 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20888645 tcacggctgaagacctacgctagggggactccccgcagccctgcagcctctccccaggct 20888704
Query: 472 tgcgaccagcccttctctgagatttgagcctccgagttccaattcccctgccccttccca 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20888705 tgcgaccagcccttctctgagatttgagcctccgagttccaattcccctgccccttccca 20888764
Query: 532 ctccactgagaggctaggtgaggtgtttccaggttgctggggctctgccattaaatcaag 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20888765 ctccactgagaggctaggtgaggtgtttccaggttgctggggctctgccattaaatcaag 20888824
Query: 592 gccggttagggaacaggaagcctgagtcttcactccactacctcttccctgtgctgttac 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20888825 gccggttagggaacaggaagcctgagtcttcactccactacctcttccctgtgctgttac 20888884
Query: 652 agtgtcattgtcgatgttaaattaaaataatgttctt 688
|||||||||||||||||||||||||||||||||||||
Sbjct: 20888885 agtgtcattgtcgatgttaaattaaaataatgttctt 20888921
Score = 462 bits (233), Expect = e-127
Identities = 233/233 (100%)
Strand = Plus / Plus
Query: 1 ccgaagaggcggggcactgcgaacccggagctcggtgacacccggcggtcgcggctggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20886040 ccgaagaggcggggcactgcgaacccggagctcggtgacacccggcggtcgcggctggct 20886099
Query: 61 gtctgactctgaggatggcggggagggggaagctaattgcggtgatcggagacgaagaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20886100 gtctgactctgaggatggcggggagggggaagctaattgcggtgatcggagacgaagaca 20886159
Query: 121 cggtgactggcttcctgctgggcggcataggggagcttaacaaaaaccgccaccctaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20886160 cggtgactggcttcctgctgggcggcataggggagcttaacaaaaaccgccaccctaatt 20886219
Query: 181 tcctggtggtggagaaggatacaaccatcaatgagatcgaagacactttccgg 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20886220 tcctggtggtggagaaggatacaaccatcaatgagatcgaagacactttccgg 20886272
>Sscrofa_Chr01
|| Length = 315321322
Score = 139 bits (70), Expect = 2e-30
Identities = 136/153 (88%), Gaps = 5/153 (3%)
Strand = Plus / Plus
Query: 527 tcccactccactgagaggctaggtgaggtgtttccaggttgctggggctctgccattaa- 585
|||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 214234667 tcccactccactgagaggctaggtga-gtggttccaggttgctggggctctgacattaag 214234725
Query: 586 atcaaggccggttagggaacaggaagcctg-agtcttcactccactacctcttccctgtg 644
|||||||| ||| | |||||||||| |||| || ||| |||||||||||||||||||||
Sbjct: 214234726 atcaaggctggtgaaggaacaggaaacctgctgtgttctctccactacctcttccctgtg 214234785
Query: 645 ctgt--tacagtgtcattgtcgatgttaaatta 675
|||| |||||||||||||| ||||||||||
Sbjct: 214234786 ctgtcctacagtgtcattgttactgttaaatta 214234818
Score = 71.9 bits (36), Expect = 5e-10
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 453 tgcagcctctccccaggcttgcgaccagcccttctctgagatttgagcctcc 504
|||||||||||||| ||||||| | |||||||||||| ||||||||||||||
Sbjct: 214234618 tgcagcctctcccccggcttgccatcagcccttctctaagatttgagcctcc 214234669
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 17,771,198
Number of extensions: 438
Number of successful extensions: 438
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 436
Number of HSP's successfully gapped: 5
Length of query: 728
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 707
Effective length of database: 2,808,413,156
Effective search space: 1985548101292
Effective search space used: 1985548101292
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)