Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003495
(1467 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035680.1| ribonuclease 4 [Bos taurus]. 265 6e-71
Alignment gi|XP_002690699.1| PREDICTED: ribonuclease 4-like [Bos taurus]. 220 2e-57
Alignment gi|XP_001251831.2| PREDICTED: ribonuclease 4-like [Bos taurus]. 220 2e-57
Alignment gi|NP_776316.1| brain ribonuclease precursor [Bos taurus]. 141 2e-33
Alignment gi|NP_001014408.2| ribonuclease pancreatic precursor [Bos tauru... 140 3e-33
Alignment gi|NP_861526.1| seminal ribonuclease precursor [Bos taurus]. 135 1e-31
Alignment gi|NP_001092866.1| angiogenin-2 [Bos taurus]. 97 3e-20
Alignment gi|NP_001071612.1| angiogenin-1 precursor [Bos taurus]. 88 2e-17
Alignment gi|XP_002690700.1| PREDICTED: angiogenin-1-like [Bos taurus]. 88 2e-17
Alignment gi|XP_001251870.1| PREDICTED: angiogenin-1-like [Bos taurus]. 88 2e-17
>ref|NP_001035680.1| ribonuclease 4 [Bos taurus].
Length = 147
Score = 265 bits (678), Expect = 6e-71
Identities = 124/147 (84%), Positives = 128/147 (87%)
Frame = +3
Query: 318 MALQRTHVXXXXXXXXXXXXXXVQPSYGQDRMYQRFLRQHVDPDATGGNDAYCNLMMQRR 497
MALQRT VQPSYGQDRMYQRFLRQHVDPD TGGND+YCNLMMQRR
Sbjct: 1 MALQRTQAFLLLLLLTLLGLGLVQPSYGQDRMYQRFLRQHVDPDETGGNDSYCNLMMQRR 60
Query: 498 KMTSHYCKRFNTFIHEDIWNIRSICSTSNIQCKNGQMNCHEGVVKVTDCRETGSSRAPNC 677
KMTSH CKRFNTFIHED+WNIRSICST+NIQCKNGQMNCHEGVV+VTDCRETGSSRAPNC
Sbjct: 61 KMTSHQCKRFNTFIHEDLWNIRSICSTTNIQCKNGQMNCHEGVVRVTDCRETGSSRAPNC 120
Query: 678 RYRAMASTRRVVIACEGNPEVPVHFDK 758
RYRA ASTRRVVIACEGNPEVPVHFDK
Sbjct: 121 RYRAKASTRRVVIACEGNPEVPVHFDK 147
>ref|XP_002690699.1| PREDICTED: ribonuclease 4-like [Bos taurus].
Length = 132
Score = 220 bits (561), Expect = 2e-57
Identities = 102/126 (80%), Positives = 107/126 (84%)
Frame = +3
Query: 318 MALQRTHVXXXXXXXXXXXXXXVQPSYGQDRMYQRFLRQHVDPDATGGNDAYCNLMMQRR 497
MALQRT VQPSYGQDRMYQRFLRQHVDPD TGGND+YCNLMMQRR
Sbjct: 1 MALQRTQAFLLLLLLTLLGLGLVQPSYGQDRMYQRFLRQHVDPDETGGNDSYCNLMMQRR 60
Query: 498 KMTSHYCKRFNTFIHEDIWNIRSICSTSNIQCKNGQMNCHEGVVKVTDCRETGSSRAPNC 677
KMTSH CKRFNTFIHED+WNIRSICST+NIQCKNG+MNCHEGVV+VTDCRETGSSRAPNC
Sbjct: 61 KMTSHQCKRFNTFIHEDLWNIRSICSTTNIQCKNGRMNCHEGVVRVTDCRETGSSRAPNC 120
Query: 678 RYRAMA 695
RYRA A
Sbjct: 121 RYRAKA 126
>ref|XP_001251831.2| PREDICTED: ribonuclease 4-like [Bos taurus].
Length = 132
Score = 220 bits (561), Expect = 2e-57
Identities = 102/126 (80%), Positives = 107/126 (84%)
Frame = +3
Query: 318 MALQRTHVXXXXXXXXXXXXXXVQPSYGQDRMYQRFLRQHVDPDATGGNDAYCNLMMQRR 497
MALQRT VQPSYGQDRMYQRFLRQHVDPD TGGND+YCNLMMQRR
Sbjct: 1 MALQRTQAFLLLLLLTLLGLGLVQPSYGQDRMYQRFLRQHVDPDETGGNDSYCNLMMQRR 60
Query: 498 KMTSHYCKRFNTFIHEDIWNIRSICSTSNIQCKNGQMNCHEGVVKVTDCRETGSSRAPNC 677
KMTSH CKRFNTFIHED+WNIRSICST+NIQCKNG+MNCHEGVV+VTDCRETGSSRAPNC
Sbjct: 61 KMTSHQCKRFNTFIHEDLWNIRSICSTTNIQCKNGRMNCHEGVVRVTDCRETGSSRAPNC 120
Query: 678 RYRAMA 695
RYRA A
Sbjct: 121 RYRAKA 126
>ref|NP_776316.1| brain ribonuclease precursor [Bos taurus].
Length = 167
Score = 141 bits (355), Expect = 2e-33
Identities = 64/131 (48%), Positives = 88/131 (67%), Gaps = 3/131 (2%)
Frame = +3
Query: 384 VQPSYGQDRMYQRFLRQHVDP-DATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNI 560
VQPS G++ +F RQH+D ++ N YCN MM+RR+MT CK NTF+HE + ++
Sbjct: 21 VQPSLGKESAAAKFRRQHMDSGSSSSSNPNYCNQMMKRRRMTHGRCKPVNTFVHESLDDV 80
Query: 561 RSICSTSNIQCKNGQMNCHE--GVVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNP 734
+++CS NI CKNG NC++ + +TDCRETGSS+ PNC Y+ + + +ACEGNP
Sbjct: 81 KAVCSQKNITCKNGHPNCYQSKSTMSITDCRETGSSKYPNCAYKTSQKQKYITVACEGNP 140
Query: 735 EVPVHFDK*VL 767
VPVHFD VL
Sbjct: 141 YVPVHFDGAVL 151
>ref|NP_001014408.2| ribonuclease pancreatic precursor [Bos taurus].
Length = 150
Score = 140 bits (353), Expect = 3e-33
Identities = 59/127 (46%), Positives = 87/127 (68%), Gaps = 3/127 (2%)
Frame = +3
Query: 384 VQPSYGQDRMYQRFLRQHVDPDATGGNDA-YCNLMMQRRKMTSHYCKRFNTFIHEDIWNI 560
VQPS G++ +F RQH+D + + + YCN MM+ R +T CK NTF+HE + ++
Sbjct: 21 VQPSLGKETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADV 80
Query: 561 RSICSTSNIQCKNGQMNCHEG--VVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNP 734
+++CS N+ CKNGQ NC++ + +TDCRETGSS+ PNC Y+ + + +++ACEGNP
Sbjct: 81 QAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTTQANKHIIVACEGNP 140
Query: 735 EVPVHFD 755
VPVHFD
Sbjct: 141 YVPVHFD 147
>ref|NP_861526.1| seminal ribonuclease precursor [Bos taurus].
Length = 150
Score = 135 bits (339), Expect = 1e-31
Identities = 59/127 (46%), Positives = 85/127 (66%), Gaps = 3/127 (2%)
Frame = +3
Query: 384 VQPSYGQDRMYQRFLRQHVDP-DATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNI 560
VQPS G++ +F RQH+D ++ + YCNLMM RKMT CK NTF+HE + ++
Sbjct: 21 VQPSLGKESAAAKFERQHMDSGNSPSSSSNYCNLMMCCRKMTQGKCKPVNTFVHESLADV 80
Query: 561 RSICSTSNIQCKNGQMNCHE--GVVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNP 734
+++CS + CKNGQ NC++ +++TDCRETGSS+ PNC Y+ + +++AC G P
Sbjct: 81 KAVCSQKKVTCKNGQTNCYQSKSTMRITDCRETGSSKYPNCAYKTTQVEKHIIVACGGKP 140
Query: 735 EVPVHFD 755
VPVHFD
Sbjct: 141 SVPVHFD 147
>ref|NP_001092866.1| angiogenin-2 [Bos taurus].
Length = 147
Score = 97.4 bits (241), Expect = 3e-20
Identities = 51/125 (40%), Positives = 69/125 (55%)
Frame = +3
Query: 402 QDRMYQRFLRQHVDPDATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNIRSICSTS 581
Q+ Y+ FLR+H DP TG +D YCN MM+RR MT CK NTFIH + +IR++C
Sbjct: 25 QNDAYRGFLRKHYDPSPTGHDDRYCNTMMERRNMTRP-CKDTNTFIHGNSDDIRAVCDDR 83
Query: 582 NIQCKNGQMNCHEGVVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNPEVPVHFDK* 761
N + + +VT CR G S P CRYRA + R +VI C P+H ++
Sbjct: 84 NGEPYRNGLRRSRSPFQVTTCRHRGGSPRPPCRYRAFRANRVIVIRCRDG--FPIHLEEN 141
Query: 762 VLPSR 776
+P R
Sbjct: 142 FIPPR 146
>ref|NP_001071612.1| angiogenin-1 precursor [Bos taurus].
Length = 148
Score = 88.2 bits (217), Expect = 2e-17
Identities = 47/118 (39%), Positives = 64/118 (54%)
Frame = +3
Query: 405 DRMYQRFLRQHVDPDATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNIRSICSTSN 584
D Y FL QH D G ND YC MM+ R++T CK NTFIH + +I++IC N
Sbjct: 27 DYRYIHFLTQHYDAKPKGRNDEYCFNMMKNRRLTRP-CKDRNTFIHGNKNDIKAICEDRN 85
Query: 585 IQCKNGQMNCHEGVVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNPEVPVHFDK 758
Q G + + ++T C+ G S P CRY A +R +V+ CE +PVHFD+
Sbjct: 86 GQPYRGDLRISKSEFQITICKHKGGSSRPPCRYGATEDSRVIVVGCENG--LPVHFDE 141
>ref|XP_002690700.1| PREDICTED: angiogenin-1-like [Bos taurus].
Length = 148
Score = 87.8 bits (216), Expect = 2e-17
Identities = 46/122 (37%), Positives = 65/122 (53%)
Frame = +3
Query: 405 DRMYQRFLRQHVDPDATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNIRSICSTSN 584
DR Y+ FL QH D G ++ YC MM++R +T CK NTF+H + +I+ IC N
Sbjct: 27 DRRYRHFLIQHYDRSPKGRDNKYCETMMEKRHLTKP-CKSINTFVHGNKNDIKDICKDKN 85
Query: 585 IQCKNGQMNCHEGVVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNPEVPVHFDK*V 764
+ G + + +VT C+ G S P C Y+A R +VI CE PVHFD+
Sbjct: 86 GKPYRGNLRISKSPFQVTICKHKGGSTRPPCHYKATKDYRVIVIGCEKG--WPVHFDESF 143
Query: 765 LP 770
+P
Sbjct: 144 VP 145
>ref|XP_001251870.1| PREDICTED: angiogenin-1-like [Bos taurus].
Length = 148
Score = 87.8 bits (216), Expect = 2e-17
Identities = 46/122 (37%), Positives = 65/122 (53%)
Frame = +3
Query: 405 DRMYQRFLRQHVDPDATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNIRSICSTSN 584
DR Y+ FL QH D G ++ YC MM++R +T CK NTF+H + +I+ IC N
Sbjct: 27 DRRYRHFLIQHYDRSPKGRDNKYCETMMEKRHLTKP-CKSINTFVHGNKNDIKDICKDKN 85
Query: 585 IQCKNGQMNCHEGVVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNPEVPVHFDK*V 764
+ G + + +VT C+ G S P C Y+A R +VI CE PVHFD+
Sbjct: 86 GKPYRGNLRISKSPFQVTICKHKGGSTRPPCHYKATKDYRVIVIGCEKG--WPVHFDESF 143
Query: 765 LP 770
+P
Sbjct: 144 VP 145
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,370,092
Number of extensions: 1454553
Number of successful extensions: 4540
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 4505
Number of HSP's successfully gapped: 24
Length of query: 489
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 383
Effective length of database: 14,174,046
Effective search space: 5428659618
Effective search space used: 5428659618
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003495
(1467 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853768.1| PREDICTED: similar to Ribonuclease 4 precursor ... 239 4e-63
Alignment gi|XP_532618.2| PREDICTED: similar to Ribonuclease pancreatic p... 131 1e-30
>ref|XP_853768.1| PREDICTED: similar to Ribonuclease 4 precursor (RNase 4) [Canis
familiaris].
Length = 145
Score = 239 bits (611), Expect = 4e-63
Identities = 107/125 (85%), Positives = 117/125 (93%)
Frame = +3
Query: 384 VQPSYGQDRMYQRFLRQHVDPDATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNIR 563
VQP+ GQDRMYQRFLRQHVDP+ GGND YCN+MMQRRKMT+ CKRFNTF+HEDIWNIR
Sbjct: 21 VQPADGQDRMYQRFLRQHVDPEGKGGNDTYCNVMMQRRKMTTRQCKRFNTFVHEDIWNIR 80
Query: 564 SICSTSNIQCKNGQMNCHEGVVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNPEVP 743
SICST+NIQCKNG+MNCHEGVVKVTDCRETGSSRAPNCRYRA ASTR VVIACEG+PE+P
Sbjct: 81 SICSTTNIQCKNGKMNCHEGVVKVTDCRETGSSRAPNCRYRASASTRHVVIACEGDPELP 140
Query: 744 VHFDK 758
VHFD+
Sbjct: 141 VHFDR 145
>ref|XP_532618.2| PREDICTED: similar to Ribonuclease pancreatic precursor (RNase 1)
(RNase A) (RNase UpI-1) (RIB-1) (HP-RNase) [Canis
familiaris].
Length = 151
Score = 131 bits (330), Expect = 1e-30
Identities = 57/126 (45%), Positives = 81/126 (64%), Gaps = 2/126 (1%)
Frame = +3
Query: 384 VQPSYGQDRMYQRFLRQHVDPDATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNIR 563
VQPS ++ +F RQH+D + +YCNLMM+RR MT +CK NTF+HE + +++
Sbjct: 23 VQPSLARESKAMKFQRQHMDSHPAAISASYCNLMMKRRNMTDGWCKPVNTFVHEPLADVQ 82
Query: 564 SICSTSNIQCKNGQMNCHE--GVVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNPE 737
++CS ++ CKNGQ NCH+ + +TDCR S+ P C Y + +V+ACEGNP
Sbjct: 83 AVCSQKDVLCKNGQSNCHQSRSQMNITDCRLKNGSKFPKCVYTTTQKEQYIVVACEGNPH 142
Query: 738 VPVHFD 755
VPVHFD
Sbjct: 143 VPVHFD 148
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,570,671
Number of extensions: 1495666
Number of successful extensions: 4631
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4628
Number of HSP's successfully gapped: 2
Length of query: 489
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 382
Effective length of database: 15,307,552
Effective search space: 5847484864
Effective search space used: 5847484864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003495
(1467 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_919412.1| ribonuclease 4 precursor [Homo sapiens]. 251 9e-67
Alignment gi|NP_002928.1| ribonuclease 4 precursor [Homo sapiens]. 251 9e-67
Alignment gi|NP_937878.1| ribonuclease pancreatic precursor [Homo sapiens]. 135 1e-31
Alignment gi|NP_937877.1| ribonuclease pancreatic precursor [Homo sapiens]. 135 1e-31
Alignment gi|NP_002924.1| ribonuclease pancreatic precursor [Homo sapiens]. 135 1e-31
Alignment gi|NP_937875.1| ribonuclease pancreatic precursor [Homo sapiens]. 135 1e-31
Alignment gi|NP_001091046.1| angiogenin precursor [Homo sapiens]. 89 1e-17
Alignment gi|NP_001136.1| angiogenin precursor [Homo sapiens]. 89 1e-17
Alignment gi|NP_115961.2| ribonuclease 7 precursor [Homo sapiens]. 79 1e-14
Alignment gi|NP_005606.1| ribonuclease K6 precursor [Homo sapiens]. 75 1e-13
>ref|NP_919412.1| ribonuclease 4 precursor [Homo sapiens].
Length = 147
Score = 251 bits (642), Expect = 9e-67
Identities = 117/146 (80%), Positives = 126/146 (86%)
Frame = +3
Query: 318 MALQRTHVXXXXXXXXXXXXXXVQPSYGQDRMYQRFLRQHVDPDATGGNDAYCNLMMQRR 497
MALQRTH VQPSYGQD MYQRFLRQHV P+ TGG+D YCNLMMQRR
Sbjct: 1 MALQRTHSLLLLLLLTLLGLGLVQPSYGQDGMYQRFLRQHVHPEETGGSDRYCNLMMQRR 60
Query: 498 KMTSHYCKRFNTFIHEDIWNIRSICSTSNIQCKNGQMNCHEGVVKVTDCRETGSSRAPNC 677
KMT ++CKRFNTFIHEDIWNIRSICST+NIQCKNG+MNCHEGVVKVTDCR+TGSSRAPNC
Sbjct: 61 KMTLYHCKRFNTFIHEDIWNIRSICSTTNIQCKNGKMNCHEGVVKVTDCRDTGSSRAPNC 120
Query: 678 RYRAMASTRRVVIACEGNPEVPVHFD 755
RYRA+ASTRRVVIACEGNP+VPVHFD
Sbjct: 121 RYRAIASTRRVVIACEGNPQVPVHFD 146
>ref|NP_002928.1| ribonuclease 4 precursor [Homo sapiens].
Length = 147
Score = 251 bits (642), Expect = 9e-67
Identities = 117/146 (80%), Positives = 126/146 (86%)
Frame = +3
Query: 318 MALQRTHVXXXXXXXXXXXXXXVQPSYGQDRMYQRFLRQHVDPDATGGNDAYCNLMMQRR 497
MALQRTH VQPSYGQD MYQRFLRQHV P+ TGG+D YCNLMMQRR
Sbjct: 1 MALQRTHSLLLLLLLTLLGLGLVQPSYGQDGMYQRFLRQHVHPEETGGSDRYCNLMMQRR 60
Query: 498 KMTSHYCKRFNTFIHEDIWNIRSICSTSNIQCKNGQMNCHEGVVKVTDCRETGSSRAPNC 677
KMT ++CKRFNTFIHEDIWNIRSICST+NIQCKNG+MNCHEGVVKVTDCR+TGSSRAPNC
Sbjct: 61 KMTLYHCKRFNTFIHEDIWNIRSICSTTNIQCKNGKMNCHEGVVKVTDCRDTGSSRAPNC 120
Query: 678 RYRAMASTRRVVIACEGNPEVPVHFD 755
RYRA+ASTRRVVIACEGNP+VPVHFD
Sbjct: 121 RYRAIASTRRVVIACEGNPQVPVHFD 146
>ref|NP_937878.1| ribonuclease pancreatic precursor [Homo sapiens].
Length = 156
Score = 135 bits (340), Expect = 1e-31
Identities = 63/149 (42%), Positives = 91/149 (61%), Gaps = 3/149 (2%)
Frame = +3
Query: 318 MALQRTHVXXXXXXXXXXXXXXVQPSYGQDRMYQRFLRQHVDPDAT-GGNDAYCNLMMQR 494
MAL+++ V VQPS G++ ++F RQH+D D++ + YCN MM+R
Sbjct: 1 MALEKSLVRLLLLVLILLVLGWVQPSLGKESRAKKFQRQHMDSDSSPSSSSTYCNQMMRR 60
Query: 495 RKMTSHYCKRFNTFIHEDIWNIRSICSTSNIQCKNGQMNCHE--GVVKVTDCRETGSSRA 668
R MT CK NTF+HE + +++++C + CKNGQ NC++ + +TDCR T SR
Sbjct: 61 RNMTQGRCKPVNTFVHEPLVDVQNVCFQEKVTCKNGQGNCYKSNSSMHITDCRLTNGSRY 120
Query: 669 PNCRYRAMASTRRVVIACEGNPEVPVHFD 755
PNC YR R +++ACEG+P VPVHFD
Sbjct: 121 PNCAYRTSPKERHIIVACEGSPYVPVHFD 149
>ref|NP_937877.1| ribonuclease pancreatic precursor [Homo sapiens].
Length = 156
Score = 135 bits (340), Expect = 1e-31
Identities = 63/149 (42%), Positives = 91/149 (61%), Gaps = 3/149 (2%)
Frame = +3
Query: 318 MALQRTHVXXXXXXXXXXXXXXVQPSYGQDRMYQRFLRQHVDPDAT-GGNDAYCNLMMQR 494
MAL+++ V VQPS G++ ++F RQH+D D++ + YCN MM+R
Sbjct: 1 MALEKSLVRLLLLVLILLVLGWVQPSLGKESRAKKFQRQHMDSDSSPSSSSTYCNQMMRR 60
Query: 495 RKMTSHYCKRFNTFIHEDIWNIRSICSTSNIQCKNGQMNCHE--GVVKVTDCRETGSSRA 668
R MT CK NTF+HE + +++++C + CKNGQ NC++ + +TDCR T SR
Sbjct: 61 RNMTQGRCKPVNTFVHEPLVDVQNVCFQEKVTCKNGQGNCYKSNSSMHITDCRLTNGSRY 120
Query: 669 PNCRYRAMASTRRVVIACEGNPEVPVHFD 755
PNC YR R +++ACEG+P VPVHFD
Sbjct: 121 PNCAYRTSPKERHIIVACEGSPYVPVHFD 149
>ref|NP_002924.1| ribonuclease pancreatic precursor [Homo sapiens].
Length = 156
Score = 135 bits (340), Expect = 1e-31
Identities = 63/149 (42%), Positives = 91/149 (61%), Gaps = 3/149 (2%)
Frame = +3
Query: 318 MALQRTHVXXXXXXXXXXXXXXVQPSYGQDRMYQRFLRQHVDPDAT-GGNDAYCNLMMQR 494
MAL+++ V VQPS G++ ++F RQH+D D++ + YCN MM+R
Sbjct: 1 MALEKSLVRLLLLVLILLVLGWVQPSLGKESRAKKFQRQHMDSDSSPSSSSTYCNQMMRR 60
Query: 495 RKMTSHYCKRFNTFIHEDIWNIRSICSTSNIQCKNGQMNCHE--GVVKVTDCRETGSSRA 668
R MT CK NTF+HE + +++++C + CKNGQ NC++ + +TDCR T SR
Sbjct: 61 RNMTQGRCKPVNTFVHEPLVDVQNVCFQEKVTCKNGQGNCYKSNSSMHITDCRLTNGSRY 120
Query: 669 PNCRYRAMASTRRVVIACEGNPEVPVHFD 755
PNC YR R +++ACEG+P VPVHFD
Sbjct: 121 PNCAYRTSPKERHIIVACEGSPYVPVHFD 149
>ref|NP_937875.1| ribonuclease pancreatic precursor [Homo sapiens].
Length = 156
Score = 135 bits (340), Expect = 1e-31
Identities = 63/149 (42%), Positives = 91/149 (61%), Gaps = 3/149 (2%)
Frame = +3
Query: 318 MALQRTHVXXXXXXXXXXXXXXVQPSYGQDRMYQRFLRQHVDPDAT-GGNDAYCNLMMQR 494
MAL+++ V VQPS G++ ++F RQH+D D++ + YCN MM+R
Sbjct: 1 MALEKSLVRLLLLVLILLVLGWVQPSLGKESRAKKFQRQHMDSDSSPSSSSTYCNQMMRR 60
Query: 495 RKMTSHYCKRFNTFIHEDIWNIRSICSTSNIQCKNGQMNCHE--GVVKVTDCRETGSSRA 668
R MT CK NTF+HE + +++++C + CKNGQ NC++ + +TDCR T SR
Sbjct: 61 RNMTQGRCKPVNTFVHEPLVDVQNVCFQEKVTCKNGQGNCYKSNSSMHITDCRLTNGSRY 120
Query: 669 PNCRYRAMASTRRVVIACEGNPEVPVHFD 755
PNC YR R +++ACEG+P VPVHFD
Sbjct: 121 PNCAYRTSPKERHIIVACEGSPYVPVHFD 149
>ref|NP_001091046.1| angiogenin precursor [Homo sapiens].
Length = 147
Score = 89.0 bits (219), Expect = 1e-17
Identities = 50/124 (40%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Frame = +3
Query: 390 PSYGQDRM-YQRFLRQHVDPDATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNIRS 566
P+ QD Y FL QH D G +D YC +M+RR +TS CK NTFIH + +I++
Sbjct: 21 PTLAQDNSRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLTSP-CKDINTFIHGNKRSIKA 79
Query: 567 ICSTSNIQCKNGQMNCHEGVVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNPEVPV 746
IC N + + +VT C+ G S P C+YRA A R VV+ACE +PV
Sbjct: 80 ICENKNGNPHRENLRISKSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENG--LPV 137
Query: 747 HFDK 758
H D+
Sbjct: 138 HLDQ 141
>ref|NP_001136.1| angiogenin precursor [Homo sapiens].
Length = 147
Score = 89.0 bits (219), Expect = 1e-17
Identities = 50/124 (40%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Frame = +3
Query: 390 PSYGQDRM-YQRFLRQHVDPDATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNIRS 566
P+ QD Y FL QH D G +D YC +M+RR +TS CK NTFIH + +I++
Sbjct: 21 PTLAQDNSRYTHFLTQHYDAKPQGRDDRYCESIMRRRGLTSP-CKDINTFIHGNKRSIKA 79
Query: 567 ICSTSNIQCKNGQMNCHEGVVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNPEVPV 746
IC N + + +VT C+ G S P C+YRA A R VV+ACE +PV
Sbjct: 80 ICENKNGNPHRENLRISKSSFQVTTCKLHGGSPWPPCQYRATAGFRNVVVACENG--LPV 137
Query: 747 HFDK 758
H D+
Sbjct: 138 HLDQ 141
>ref|NP_115961.2| ribonuclease 7 precursor [Homo sapiens].
Length = 156
Score = 79.0 bits (193), Expect = 1e-14
Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 10/124 (8%)
Frame = +3
Query: 417 QRFLRQHVDPDATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNIRSICSTSNIQCK 596
Q F QH+ P N A N+ ++ CK NTF+HE ++ + C T I CK
Sbjct: 37 QWFKIQHMQPSPQACNSAMKNINKHTKR-----CKDLNTFLHEPFSSVAATCQTPKIACK 91
Query: 597 NGQMNCHE--GVVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNPE--------VPV 746
NG NCH+ G V +T C+ T S + PNCRY+ + V+AC+ + VPV
Sbjct: 92 NGDKNCHQSHGAVSLTMCKLT-SGKYPNCRYKEKRQNKSYVVACKPPQKKDSQQFHLVPV 150
Query: 747 HFDK 758
H D+
Sbjct: 151 HLDR 154
>ref|NP_005606.1| ribonuclease K6 precursor [Homo sapiens].
Length = 150
Score = 75.5 bits (184), Expect = 1e-13
Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 9/117 (7%)
Frame = +3
Query: 432 QHVDPDATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNIRSICSTSNIQCKNGQMN 611
QH+ P + CN M + +CK NTF+H+ N+ ++C +I CKN + N
Sbjct: 37 QHIQP-----SPLQCNRAMSGINNYTQHCKHQNTFLHDSFQNVAAVCDLLSIVCKNRRHN 91
Query: 612 CHEG--VVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNPE-------VPVHFD 755
CH+ V +TDCR T S + P CRY A A + ++AC+ + VPVH D
Sbjct: 92 CHQSSKPVNMTDCRLT-SGKYPQCRYSAAAQYKFFIVACDPPQKSDPPYKLVPVHLD 147
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,473,575
Number of extensions: 1463275
Number of successful extensions: 4643
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4606
Number of HSP's successfully gapped: 12
Length of query: 489
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 382
Effective length of database: 14,770,016
Effective search space: 5642146112
Effective search space used: 5642146112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003495
(1467 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_957691.1| ribonuclease 4 precursor [Mus musculus]. 245 7e-65
Alignment gi|NP_067447.2| ribonuclease 4 precursor [Mus musculus]. 245 7e-65
Alignment gi|NP_035401.2| ribonuclease pancreatic precursor [Mus musculus]. 135 8e-32
Alignment gi|NP_031473.1| angiogenin precursor [Mus musculus]. 97 4e-20
Alignment gi|NP_001155203.1| angiogenin precursor [Mus musculus]. 97 4e-20
Alignment gi|NP_808212.2| angiogenin, ribonuclease A family, member 4 [Mu... 93 6e-19
Alignment gi|NP_031474.2| angiogenin, ribonuclease A family, member 5 [Mu... 89 9e-18
Alignment gi|NP_031475.2| angiogenin-2 precursor [Mus musculus]. 88 2e-17
Alignment gi|NP_084374.2| ribonuclease K6 precursor [Mus musculus]. 88 2e-17
Alignment gi|NP_001116866.2| angiogenin-3 precursor [Mus musculus]. 86 1e-16
>ref|NP_957691.1| ribonuclease 4 precursor [Mus musculus].
Length = 148
Score = 245 bits (625), Expect = 7e-65
Identities = 115/148 (77%), Positives = 122/148 (82%)
Frame = +3
Query: 315 VMALQRTHVXXXXXXXXXXXXXXVQPSYGQDRMYQRFLRQHVDPDATGGNDAYCNLMMQR 494
+M LQRT VQPSYGQDRMYQRFLRQHVDP TGGND YCN+MMQR
Sbjct: 1 MMDLQRTQSLLLLLVLTLLGLGLVQPSYGQDRMYQRFLRQHVDPQVTGGNDNYCNVMMQR 60
Query: 495 RKMTSHYCKRFNTFIHEDIWNIRSICSTSNIQCKNGQMNCHEGVVKVTDCRETGSSRAPN 674
RKMTS CKRFNTFIHEDIWNIR ICST+NI CKNGQMNCHEGVVKVTDCRETG+S+APN
Sbjct: 61 RKMTSVQCKRFNTFIHEDIWNIRGICSTTNILCKNGQMNCHEGVVKVTDCRETGNSKAPN 120
Query: 675 CRYRAMASTRRVVIACEGNPEVPVHFDK 758
CRYRA STRRVVIACEG+PEVPVHFD+
Sbjct: 121 CRYRARTSTRRVVIACEGDPEVPVHFDR 148
>ref|NP_067447.2| ribonuclease 4 precursor [Mus musculus].
Length = 148
Score = 245 bits (625), Expect = 7e-65
Identities = 115/148 (77%), Positives = 122/148 (82%)
Frame = +3
Query: 315 VMALQRTHVXXXXXXXXXXXXXXVQPSYGQDRMYQRFLRQHVDPDATGGNDAYCNLMMQR 494
+M LQRT VQPSYGQDRMYQRFLRQHVDP TGGND YCN+MMQR
Sbjct: 1 MMDLQRTQSLLLLLVLTLLGLGLVQPSYGQDRMYQRFLRQHVDPQVTGGNDNYCNVMMQR 60
Query: 495 RKMTSHYCKRFNTFIHEDIWNIRSICSTSNIQCKNGQMNCHEGVVKVTDCRETGSSRAPN 674
RKMTS CKRFNTFIHEDIWNIR ICST+NI CKNGQMNCHEGVVKVTDCRETG+S+APN
Sbjct: 61 RKMTSVQCKRFNTFIHEDIWNIRGICSTTNILCKNGQMNCHEGVVKVTDCRETGNSKAPN 120
Query: 675 CRYRAMASTRRVVIACEGNPEVPVHFDK 758
CRYRA STRRVVIACEG+PEVPVHFD+
Sbjct: 121 CRYRARTSTRRVVIACEGDPEVPVHFDR 148
>ref|NP_035401.2| ribonuclease pancreatic precursor [Mus musculus].
Length = 149
Score = 135 bits (340), Expect = 8e-32
Identities = 59/127 (46%), Positives = 86/127 (67%), Gaps = 3/127 (2%)
Frame = +3
Query: 384 VQPSYGQDRMYQRFLRQHVDPDATGGND-AYCNLMMQRRKMTSHYCKRFNTFIHEDIWNI 560
VQPS G++ Q+F RQH+DPD + N YCN MM+RR MT+ CK NTF+HE + ++
Sbjct: 20 VQPSLGRESAAQKFQRQHMDPDGSSINSPTYCNQMMKRRDMTNGSCKPVNTFVHEPLADV 79
Query: 561 RSICSTSNIQCKNGQMNCHE--GVVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNP 734
+++CS N+ CKN + NC++ + +TDC G+S+ PNC Y+ + +++ACEGNP
Sbjct: 80 QAVCSQENVTCKNRKSNCYKSSSALHITDCHLKGNSKYPNCDYKTTQYQKHIIVACEGNP 139
Query: 735 EVPVHFD 755
VPVHFD
Sbjct: 140 YVPVHFD 146
>ref|NP_031473.1| angiogenin precursor [Mus musculus].
Length = 145
Score = 96.7 bits (239), Expect = 4e-20
Identities = 54/126 (42%), Positives = 72/126 (57%), Gaps = 1/126 (0%)
Frame = +3
Query: 384 VQPSYGQD-RMYQRFLRQHVDPDATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNI 560
+ P+ QD Y +FL QH D G +D YC MM+RR +TS CK NTFIH + NI
Sbjct: 19 IPPTLAQDDSRYTKFLTQHHDAKPKGRDDRYCERMMKRRSLTSP-CKDVNTFIHGNKSNI 77
Query: 561 RSICSTSNIQCKNGQMNCHEGVVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNPEV 740
++IC + + + + +VT C+ TG S P C+YRA A R VVIACE +
Sbjct: 78 KAICGANGSPYREN-LRMSKSPFQVTTCKHTGGSPRPPCQYRASAGFRHVVIACENG--L 134
Query: 741 PVHFDK 758
PVHFD+
Sbjct: 135 PVHFDE 140
>ref|NP_001155203.1| angiogenin precursor [Mus musculus].
Length = 145
Score = 96.7 bits (239), Expect = 4e-20
Identities = 54/126 (42%), Positives = 72/126 (57%), Gaps = 1/126 (0%)
Frame = +3
Query: 384 VQPSYGQD-RMYQRFLRQHVDPDATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNI 560
+ P+ QD Y +FL QH D G +D YC MM+RR +TS CK NTFIH + NI
Sbjct: 19 IPPTLAQDDSRYTKFLTQHHDAKPKGRDDRYCERMMKRRSLTSP-CKDVNTFIHGNKSNI 77
Query: 561 RSICSTSNIQCKNGQMNCHEGVVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNPEV 740
++IC + + + + +VT C+ TG S P C+YRA A R VVIACE +
Sbjct: 78 KAICGANGSPYREN-LRMSKSPFQVTTCKHTGGSPRPPCQYRASAGFRHVVIACENG--L 134
Query: 741 PVHFDK 758
PVHFD+
Sbjct: 135 PVHFDE 140
>ref|NP_808212.2| angiogenin, ribonuclease A family, member 4 [Mus musculus].
Length = 144
Score = 92.8 bits (229), Expect = 6e-19
Identities = 51/125 (40%), Positives = 66/125 (52%)
Frame = +3
Query: 384 VQPSYGQDRMYQRFLRQHVDPDATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNIR 563
+ P+ Q+ Y++FLRQH D G +D YC MM+ RK+TS CK NTFIH NIR
Sbjct: 19 IPPTLAQNERYEKFLRQHYDAKPNGRDDRYCESMMKERKLTSP-CKDVNTFIHGTKKNIR 77
Query: 564 SICSTSNIQCKNGQMNCHEGVVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNPEVP 743
+IC ++T C +G+S P C YRA R +VIACE P
Sbjct: 78 AICGKKG-SPYGENFRISNSPFQITTCTHSGASPRPPCGYRAFKDFRYIVIACEDG--WP 134
Query: 744 VHFDK 758
VHFD+
Sbjct: 135 VHFDE 139
>ref|NP_031474.2| angiogenin, ribonuclease A family, member 5 [Mus musculus].
Length = 145
Score = 89.0 bits (219), Expect = 9e-18
Identities = 51/132 (38%), Positives = 72/132 (54%), Gaps = 7/132 (5%)
Frame = +3
Query: 384 VQPSYGQDRM-YQRFLRQHVDPDATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNI 560
+ P+ QD Y+ FL QH D TG + YC MM++RK+TS CK NTFIH+ NI
Sbjct: 19 IPPTLAQDNYRYKNFLNQHYDAKPTGRDYRYCESMMKKRKLTSP-CKEVNTFIHDTKNNI 77
Query: 561 RSICSTS------NIQCKNGQMNCHEGVVKVTDCRETGSSRAPNCRYRAMASTRRVVIAC 722
++IC + N++ N + ++T C+ G S P C+Y+A R +VIAC
Sbjct: 78 KAICGENGRPYGVNLRISNSRF-------QITTCKHKGGSPKPPCQYKAFKDFRYIVIAC 130
Query: 723 EGNPEVPVHFDK 758
E PVHFD+
Sbjct: 131 EDG--WPVHFDE 140
>ref|NP_031475.2| angiogenin-2 precursor [Mus musculus].
Length = 145
Score = 87.8 bits (216), Expect = 2e-17
Identities = 50/126 (39%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Frame = +3
Query: 384 VQPSYGQD-RMYQRFLRQHVDPDATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNI 560
+ P+ QD Y +FL QH D G +D YC MM +RK+TS +CK NTFIH+ NI
Sbjct: 19 IPPTLSQDDSRYTKFLTQHYDAKPKGRDDRYCESMMVKRKLTS-FCKDVNTFIHDTKNNI 77
Query: 561 RSICSTSNIQCKNGQMNCHEGVVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNPEV 740
++IC + + +VT C G S P CRYRA R ++I CE
Sbjct: 78 KAICGKKG-SPYGRNLRISKSHFQVTTCTHKGRSPRPPCRYRASKGFRYIIIGCENG--W 134
Query: 741 PVHFDK 758
PVHFD+
Sbjct: 135 PVHFDE 140
>ref|NP_084374.2| ribonuclease K6 precursor [Mus musculus].
Length = 153
Score = 87.8 bits (216), Expect = 2e-17
Identities = 45/105 (42%), Positives = 61/105 (58%), Gaps = 10/105 (9%)
Frame = +3
Query: 474 CNLMMQRRKMTSHYCKRFNTFIHEDIWNIRSICSTSNIQCKNGQMNCHEGV--VKVTDCR 647
CN M+ + +CK+ NTF+HE N+ + CS NI CKNG+ NCHE VK+TDC
Sbjct: 49 CNTAMRGVNNYTQHCKQINTFLHESFQNVAATCSLHNITCKNGRKNCHESAEPVKMTDCS 108
Query: 648 ETGSSRAPNCRYRAMASTRRVVIACEGNPE--------VPVHFDK 758
TG + PNCRY + + ++ACE +P+ VPVH DK
Sbjct: 109 HTGGA-YPNCRYSSDKQYKFFIVACE-HPKKEDPPYQLVPVHLDK 151
>ref|NP_001116866.2| angiogenin-3 precursor [Mus musculus].
Length = 145
Score = 85.5 bits (210), Expect = 1e-16
Identities = 52/132 (39%), Positives = 69/132 (52%), Gaps = 7/132 (5%)
Frame = +3
Query: 384 VQPSYGQDRM-YQRFLRQHVDPDATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNI 560
+ P+ QD Y +FL QH D TG + YC MM++RK+TS CK NTFIH+ NI
Sbjct: 19 IPPTLAQDNYRYIKFLTQHYDAKPTGRDYRYCESMMKKRKLTSP-CKEVNTFIHDTKNNI 77
Query: 561 RSICSTS------NIQCKNGQMNCHEGVVKVTDCRETGSSRAPNCRYRAMASTRRVVIAC 722
++IC + N + N + +VT C G S P C+Y A R +VIAC
Sbjct: 78 KAICGENGRPYGVNFRISNSRF-------QVTTCTHKGGSPRPPCQYNAFKDFRYIVIAC 130
Query: 723 EGNPEVPVHFDK 758
E PVHFD+
Sbjct: 131 EDG--WPVHFDE 140
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,210,203
Number of extensions: 1234336
Number of successful extensions: 3748
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 3718
Number of HSP's successfully gapped: 22
Length of query: 489
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 384
Effective length of database: 12,463,779
Effective search space: 4786091136
Effective search space used: 4786091136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003495
(1467 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999101.1| ribonuclease 4 precursor [Sus scrofa]. 281 5e-76
Alignment gi|NP_001161127.1| ribonuclease pancreatic [Sus scrofa]. 153 3e-37
Alignment gi|NP_001156881.1| angiogenin 4 [Sus scrofa]. 93 4e-19
Alignment gi|NP_001161128.1| ribonuclease K6 [Sus scrofa]. 82 8e-16
Alignment gi|XP_003362047.1| PREDICTED: ribonuclease 7-like [Sus scrofa]. 80 4e-15
Alignment gi|NP_001038038.1| angiogenin [Sus scrofa]. 79 5e-15
>ref|NP_999101.1| ribonuclease 4 precursor [Sus scrofa].
Length = 147
Score = 281 bits (720), Expect = 5e-76
Identities = 133/147 (90%), Positives = 133/147 (90%)
Frame = +3
Query: 318 MALQRTHVXXXXXXXXXXXXXXVQPSYGQDRMYQRFLRQHVDPDATGGNDAYCNLMMQRR 497
MALQRTHV VQPSYGQDRMYQRFLRQHVDPDATGGNDAYCNLMMQRR
Sbjct: 1 MALQRTHVLLLLLLLTLLGLGLVQPSYGQDRMYQRFLRQHVDPDATGGNDAYCNLMMQRR 60
Query: 498 KMTSHYCKRFNTFIHEDIWNIRSICSTSNIQCKNGQMNCHEGVVKVTDCRETGSSRAPNC 677
KMTSHYCKRFNTFIHEDIWNIRSICSTSNIQCKNGQMNCHEGVVKVTDCRETGSSRAPNC
Sbjct: 61 KMTSHYCKRFNTFIHEDIWNIRSICSTSNIQCKNGQMNCHEGVVKVTDCRETGSSRAPNC 120
Query: 678 RYRAMASTRRVVIACEGNPEVPVHFDK 758
RYRAMASTRRVVIACEGNPEVPVHFDK
Sbjct: 121 RYRAMASTRRVVIACEGNPEVPVHFDK 147
>ref|NP_001161127.1| ribonuclease pancreatic [Sus scrofa].
Length = 151
Score = 153 bits (386), Expect = 3e-37
Identities = 65/127 (51%), Positives = 92/127 (72%), Gaps = 3/127 (2%)
Frame = +3
Query: 384 VQPSYGQDRMYQRFLRQHVDPDATGGNDA-YCNLMMQRRKMTSHYCKRFNTFIHEDIWNI 560
VQPS G++ ++F RQH+DPD++ N + YCNLMM RR MT CK NTF+HE + ++
Sbjct: 22 VQPSLGKESPAKKFQRQHMDPDSSSSNSSNYCNLMMSRRNMTQGRCKPVNTFVHESLADV 81
Query: 561 RSICSTSNIQCKNGQMNCHE--GVVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNP 734
+++CS N+ CKNGQ NC++ + +TDCR+TGSS+ PNC Y+A + +++ACEGNP
Sbjct: 82 QAVCSQINVNCKNGQTNCYQSNSTMHITDCRQTGSSKYPNCAYKASQQEKHIIVACEGNP 141
Query: 735 EVPVHFD 755
VPVHFD
Sbjct: 142 PVPVHFD 148
>ref|NP_001156881.1| angiogenin 4 [Sus scrofa].
Length = 144
Score = 92.8 bits (229), Expect = 4e-19
Identities = 51/125 (40%), Positives = 66/125 (52%)
Frame = +3
Query: 384 VQPSYGQDRMYQRFLRQHVDPDATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNIR 563
+ P+ Q+ Y++FLRQH D G +D YC MM+ RK+TS CK NTFIH NIR
Sbjct: 19 IPPTLAQNERYEKFLRQHYDAKPNGRDDRYCESMMKERKLTSP-CKDVNTFIHGTKKNIR 77
Query: 564 SICSTSNIQCKNGQMNCHEGVVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNPEVP 743
+IC ++T C +G+S P C YRA R +VIACE P
Sbjct: 78 AICGKKG-SPYGENFRISNSPFQITTCTHSGASPRPPCGYRAFKDFRYIVIACEDG--WP 134
Query: 744 VHFDK 758
VHFD+
Sbjct: 135 VHFDE 139
>ref|NP_001161128.1| ribonuclease K6 [Sus scrofa].
Length = 153
Score = 82.0 bits (201), Expect = 8e-16
Identities = 46/123 (37%), Positives = 65/123 (52%), Gaps = 9/123 (7%)
Frame = +3
Query: 417 QRFLRQHVDPDATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNIRSICSTSNIQCK 596
Q F QH+ P + CN M + +CK NTF+H+ ++ + C+ NI CK
Sbjct: 35 QWFTIQHIQP-----SPLQCNKAMNSVNNYTWHCKPQNTFLHDSFQDVATACNLPNITCK 89
Query: 597 NGQMNCHEGV--VKVTDCRETGSSRAPNCRYRAMASTRRVVIACE----GNPE---VPVH 749
NGQ NCH+ V +T C TG + PNCRY+ A + ++AC+ G+P VPVH
Sbjct: 90 NGQNNCHQSAKPVSLTQCSFTGGN-YPNCRYKDAAQYKFFIVACDPPQKGDPPYPFVPVH 148
Query: 750 FDK 758
DK
Sbjct: 149 LDK 151
>ref|XP_003362047.1| PREDICTED: ribonuclease 7-like [Sus scrofa].
Length = 156
Score = 79.7 bits (195), Expect = 4e-15
Identities = 48/124 (38%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Frame = +3
Query: 417 QRFLRQHVDPDATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNIRSICSTSNIQCK 596
Q F QHV P G CN M S CK NTF+HE ++ + C TS I CK
Sbjct: 37 QWFETQHVQPRPQG-----CNTAMGAINKYSKRCKALNTFLHESFSSVATTCQTSIIACK 91
Query: 597 NGQMNCHEG--VVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNPE--------VPV 746
NG NCH+ V +T C+ T S R P+CRY+ ++ACE + VPV
Sbjct: 92 NGHENCHQSQKPVSLTTCKLT-SGRYPDCRYKEKQLVAPYIVACEPPQKEDSGKLQLVPV 150
Query: 747 HFDK 758
H DK
Sbjct: 151 HLDK 154
>ref|NP_001038038.1| angiogenin [Sus scrofa].
Length = 147
Score = 79.3 bits (194), Expect = 5e-15
Identities = 45/119 (37%), Positives = 64/119 (53%)
Frame = +3
Query: 402 QDRMYQRFLRQHVDPDATGGNDAYCNLMMQRRKMTSHYCKRFNTFIHEDIWNIRSICSTS 581
+DR Y FL QH D G + YC +M++R +T CK NTFIH +I++IC+
Sbjct: 27 EDR-YTHFLTQHYDAKPKGRDGRYCESIMKQRGLTRP-CKEVNTFIHGTRNDIKAICNDK 84
Query: 582 NIQCKNGQMNCHEGVVKVTDCRETGSSRAPNCRYRAMASTRRVVIACEGNPEVPVHFDK 758
N + N + ++T C+ G S P C YRA A R + +ACE +PVHFD+
Sbjct: 85 NGEPYNN-FRRSKSPFQITTCKHKGGSNRPPCGYRATAGFRTIAVACENG--LPVHFDE 140
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,022,663
Number of extensions: 936823
Number of successful extensions: 3064
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3049
Number of HSP's successfully gapped: 6
Length of query: 489
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 386
Effective length of database: 8,779,541
Effective search space: 3388902826
Effective search space used: 3388902826
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003495
(1467 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892933.2| Sus scrofa unplaced genomic scaffold ChrUScaf818 1980 0.0
>gb|GL892933.2| Sus scrofa unplaced genomic scaffold ChrUScaf818
Length = 169158
Score = 1980 bits (999), Expect = 0.0
Identities = 1139/1183 (96%), Gaps = 15/1183 (1%)
Strand = Plus / Plus
Query: 299 aggcacctccaaggtagtgatggctctccagaggacccatgtgttacttctgctcttgct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157543 aggcacctccaaggtagtgatggctctccagaggacccatgtgttacttctgctcttgct 157602
Query: 359 gctgaccctgctggggctggggctggtacagccctcctatggccaggatcgcatgtacca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157603 gctgaccctgctggggctggggctggtacagccctcctatggccaggatcgcatgtacca 157662
Query: 419 acgattcctgcggcaacacgtggaccctgatgcgacaggtggcaatgatgcctactgcaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157663 acgattcctgcggcaacacgtggaccctgatgcgacaggtggcaatgatgcctactgcaa 157722
Query: 479 cttgatgatgcaaagacggaagatgacttcacattattgcaagcgcttcaacactttcat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157723 cttgatgatgcaaagacggaagatgacttcacattattgcaagcgcttcaacactttcat 157782
Query: 539 tcatgaagacatttggaacattcgtagtatctgcagcacctccaatattcagtgcaagaa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157783 tcatgaagacatttggaacattcgtagtatctgcagcacctccaatattcagtgcaagaa 157842
Query: 599 tggccagatgaactgccatgagggcgtggtgaaggtcacagactgcagggagacaggaag 658
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 157843 tggccagatgaactgccatgagggcgtggtgaaggtcacagactgcaaggagacaggaag 157902
Query: 659 ttccagggctcccaactgcagataccgggccatggccagcactagacgggttgtcattgc 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157903 ttccagggctcccaactgcagataccgggccatggccagcactagacgggttgtcattgc 157962
Query: 719 ctgtgagggtaatccagaggtgcctgtgcactttgacaaataggtgctccccagcagggg 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157963 ctgtgagggtaatccagaggtgcctgtgcactttgacaaataggtgctccccagcagggg 158022
Query: 779 ttatggcccagcaactggcctttaacttgctcctaaaacagcaatgagtaatgcctttga 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158023 ttatggcccagcaactggcctttaacttgctcctaaaacagcaatgagtaatgcctttga 158082
Query: 839 gctgtcccaggctctgcctcctctgcnnnnnnnatatataacccattctgttaaatatat 898
|||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 158083 gctgtcccaggctctgcctcctctgctttttttatatataacccattctgttaaatatat 158142
Query: 899 agcatgaaagagaaagatgagacaaacttataatgagtctgggcttttacataataagat 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158143 agcatgaaagagaaagatgagacaaacttataatgagtctgggcttttacataataagat 158202
Query: 959 tccttttattagtcagcttagctctcacattgtatcctctggaacttagtcattacctag 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158203 tccttttattagtcagcttagctctcacattgtatcctctggaacttagtcattacctag 158262
Query: 1019 cactttcagaatttcaaggtgtttttatctaagttacctcatttgaataccacagcaccc 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158263 cactttcagaatttcaaggtgtttttatctaagttacctcatttgaataccacagcaccc 158322
Query: 1079 ttgggctgcttctgctactgcaatatgcaagagccggaaattaagggatttgctaaaacc 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158323 ttgggctgcttctgctactgcaatatgcaagagccggaaattaagggatttgctaaaacc 158382
Query: 1139 aaaaagctagtagaaaatctgagacaaaaatccaattttactggctactaatccaggctt 1198
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158383 aaaaagttagtagaaaatctgagacaaaaatccaattttactggctactaatccaggctt 158442
Query: 1199 tttccacttcatcacaagaaatgttttgaaagtatctggtttttgttatt-ccaaagctc 1257
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 158443 tttccacttcatcacaagaaatgttttgaaagtatctggtttttgttattcccaaagctc 158502
Query: 1258 agctactggcggaagcattagaaattaag-aatatatac----------tgacaaaatga 1306
|||||||| |||||||||||||||| || ||||||||| |||||||||||
Sbjct: 158503 agctactgcgggaagcattagaaatttagaaatatatactgacaaaatntgacaaaatga 158562
Query: 1307 gagctatatctgtataatttgggcagcttgctgtgtttgggtctaataagaatcaa-aaa 1365
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 158563 gagctatatctgtataatttggcaagcttgctgtgtttgggtctaataag-atcaagaaa 158621
Query: 1366 tggatccaggaattttcttttcctccttccaaaattttgagtccccctagtaaatcaaag 1425
|| | |||||||||||||||||| | |||| ||||||||| ||||||||||||| ||
Sbjct: 158622 tgatacaaggaattttcttttcctcttctcaaacttttgagtcaccctagtaaatcagag 158681
Query: 1426 t-tttaaatggactaggtcattaagaccctctctctcttcctc 1467
| || ||||| |||||||||||||||| | ||||||||||||
Sbjct: 158682 tattaaaatgtactaggtcattaagacgcattctctcttcctc 158724
Score = 533 bits (269), Expect = e-149
Identities = 272/273 (99%)
Strand = Plus / Plus
Query: 29 aacacacccgctccgcctggtgagggggctgcttcagaagtctgcttttctgcttgggag 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141289 aacacacccgctccgcctggtgagggggctgcttcagaagtctgcttttctgcttgggag 141348
Query: 89 gcgggtactggaaggaggggcctcacttcccgggagagatagggcgaggtcccaactaca 148
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 141349 gcgggtactggaaggaggggcctcacttcccgggagacatagggcgaggtcccaactaca 141408
Query: 149 aaaggctcgccctccgaccctcctcgcctctttgcacctttgcgtttctaccgactgccc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141409 aaaggctcgccctccgaccctcctcgcctctttgcacctttgcgtttctaccgactgccc 141468
Query: 209 aacgtctttaccgggaggaagaagcgggtgaaaaacaaaagctgctctttccacggtcct 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141469 aacgtctttaccgggaggaagaagcgggtgaaaaacaaaagctgctctttccacggtcct 141528
Query: 269 gcccttttctgcagacttgttccgaggccgagg 301
|||||||||||||||||||||||||||||||||
Sbjct: 141529 gcccttttctgcagacttgttccgaggccgagg 141561
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 49,516,555
Number of extensions: 784
Number of successful extensions: 784
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 779
Number of HSP's successfully gapped: 3
Length of query: 1467
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1446
Effective length of database: 2,808,413,156
Effective search space: 4060965423576
Effective search space used: 4060965423576
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)