Animal-Genome cDNA 20110601C-003503


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003503
         (1192 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001033184.1| amyloid-like protein 1 [Bos taurus].              581   e-166
Alignment   gi|NP_001070264.1| amyloid beta A4 protein [Bos taurus].             226   2e-59
Alignment   gi|XP_002699281.1| PREDICTED: amyloid beta (A4) precursor-like ...   173   3e-43
Alignment   gi|XP_001251235.1| PREDICTED: amyloid beta (A4) precursor-like ...   173   3e-43

>ref|NP_001033184.1| amyloid-like protein 1 [Bos taurus].
          Length = 642

 Score =  581 bits (1498), Expect = e-166
 Identities = 280/314 (89%), Positives = 284/314 (90%)
 Frame = +3

Query: 249  QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
            QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI
Sbjct: 49   QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 108

Query: 429  PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
            PMEQWCG  RGG CAHPHHQVVPF CLPGEFVSEALLVPEGCRFLHQERMDQCESS RR 
Sbjct: 109  PMEQWCGGTRGGHCAHPHHQVVPFHCLPGEFVSEALLVPEGCRFLHQERMDQCESSARRQ 168

Query: 609  QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGTAVGDPSTRSWPLX 788
            QEAQEAC+SQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGTA GDPSTRSWP  
Sbjct: 169  QEAQEACSSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGTAFGDPSTRSWPPG 228

Query: 789  XXXXXXXXXXXXXSFLQPVDDYFVEPPRAXXXXXXXKVPPASSHTPAGVSKVTPTPRPTD 968
                         SFLQPVDDYFVEPPRA       +VPP+SS TPAGVSKVTPTPRPTD
Sbjct: 229  GRVERGDDEEEEESFLQPVDDYFVEPPRA-DEEEEDRVPPSSSQTPAGVSKVTPTPRPTD 287

Query: 969  GVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLPKADRQALNE 1148
            GVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQS+NLPKADRQALNE
Sbjct: 288  GVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSKNLPKADRQALNE 347

Query: 1149 HFQSILQTLEEQVS 1190
            HFQSILQTLEEQVS
Sbjct: 348  HFQSILQTLEEQVS 361


>ref|NP_001070264.1| amyloid beta A4 protein [Bos taurus].
          Length = 695

 Score =  226 bits (577), Expect = 2e-59
 Identities = 121/341 (35%), Positives = 181/341 (53%), Gaps = 27/341 (7%)
 Frame = +3

Query: 249  QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
            QVA  CG+  +H +++ G+WE DP  ++ C+   + +L+YC+++YPELQI  V +A Q +
Sbjct: 33   QVAMFCGKLNMHMNVQNGKWESDPSGTKTCIGTKEGILQYCQEVYPELQITNVVEANQPV 92

Query: 429  PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
             ++ WC   R  +C    H V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+    H
Sbjct: 93   TIQNWCKRGRK-QCKTHAHMVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151

Query: 609  QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPN--PSGTAVGDPSTRSWP 782
              A+E C+ +   LH  GMLLPCG D+FRGVE+VCCP     +   S  A  D S   W 
Sbjct: 152  TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVDSADAEEDDSDVWWG 211

Query: 783  LXXXXXXXXXXXXXXSFLQPVD---------------------DYFVEPPRAXXXXXXXK 899
                              +  +                     +   E P          
Sbjct: 212  GADTDYADGSEDKVIEVAEEEEVADVEEEEADDEEDDEDGEELEEEAEEPYEEATERTTS 271

Query: 900  VPPASSHTPAGVSKVTPTPRPT----DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQI 1067
            +   ++ T   V +V   P       D VD Y   PG+ +EH  F +AK  LE +   ++
Sbjct: 272  IATTTTTTTESVEEVVRVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERM 331

Query: 1068 NEVMREWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
            ++VMREW  A+ Q++NLPKAD++A+ +HFQ  +++LE++ +
Sbjct: 332  SQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAA 372


>ref|XP_002699281.1| PREDICTED: amyloid beta (A4) precursor-like protein 2 [Bos taurus].
          Length = 767

 Score =  173 bits (438), Expect = 3e-43
 Identities = 77/157 (49%), Positives = 105/157 (66%)
 Frame = +3

Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
           Q+A  CG+  +H +++TGRWEPDP  ++ C    + VL+YC++MYPELQI  V +A Q +
Sbjct: 51  QIAMFCGKLNMHVNIQTGRWEPDPSGTQSCFGTKEEVLQYCQEMYPELQITNVMEANQPV 110

Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
            ++ WC   R  +     H V+PF+CL GEFVS+ LLVPE C F H+ERM+ CE+  R H
Sbjct: 111 SVDNWC---RRDKKQCKSHIVIPFKCLVGEFVSDVLLVPEKCLFFHKERMEVCENHQRWH 167

Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
              +EAC +Q + L+   MLLPCG D+F G EYVCCP
Sbjct: 168 TVVKEACLTQEMTLYSYSMLLPCGVDQFHGTEYVCCP 204



 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 36/83 (43%), Positives = 57/83 (68%)
 Frame = +3

Query: 942  VTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLP 1121
            + PTP PT+ VDVYF    + +EH  F +AK  LE R   +++ V +EW  A+ Q++NLP
Sbjct: 368  IPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLP 427

Query: 1122 KADRQALNEHFQSILQTLEEQVS 1190
            KA+RQ L +HFQ++++ LE++ +
Sbjct: 428  KAERQTLIQHFQAMVKALEKEAA 450


>ref|XP_001251235.1| PREDICTED: amyloid beta (A4) precursor-like protein 2 [Bos taurus].
          Length = 767

 Score =  173 bits (438), Expect = 3e-43
 Identities = 77/157 (49%), Positives = 105/157 (66%)
 Frame = +3

Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
           Q+A  CG+  +H +++TGRWEPDP  ++ C    + VL+YC++MYPELQI  V +A Q +
Sbjct: 51  QIAMFCGKLNMHVNIQTGRWEPDPSGTQSCFGTKEEVLQYCQEMYPELQITNVMEANQPV 110

Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
            ++ WC   R  +     H V+PF+CL GEFVS+ LLVPE C F H+ERM+ CE+  R H
Sbjct: 111 SVDNWC---RRDKKQCKSHIVIPFKCLVGEFVSDVLLVPEKCLFFHKERMEVCENHQRWH 167

Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
              +EAC +Q + L+   MLLPCG D+F G EYVCCP
Sbjct: 168 TVVKEACLTQEMTLYSYSMLLPCGVDQFHGTEYVCCP 204



 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 36/83 (43%), Positives = 57/83 (68%)
 Frame = +3

Query: 942  VTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLP 1121
            + PTP PT+ VDVYF    + +EH  F +AK  LE R   +++ V +EW  A+ Q++NLP
Sbjct: 368  IPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLP 427

Query: 1122 KADRQALNEHFQSILQTLEEQVS 1190
            KA+RQ L +HFQ++++ LE++ +
Sbjct: 428  KAERQTLIQHFQAMVKALEKEAA 450


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,484,719
Number of extensions: 1716987
Number of successful extensions: 11467
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 11311
Number of HSP's successfully gapped: 7
Length of query: 397
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 293
Effective length of database: 14,240,222
Effective search space: 4172385046
Effective search space used: 4172385046
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003503
         (1192 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_533688.2| PREDICTED: similar to Amyloid-like protein 1 pr...   552   e-157
Alignment   gi|XP_856822.1| PREDICTED: similar to amyloid beta (A4) precurs...   227   2e-59
Alignment   gi|XP_856660.1| PREDICTED: similar to amyloid beta (A4) precurs...   227   2e-59
Alignment   gi|XP_856368.1| PREDICTED: similar to amyloid beta (A4) precurs...   227   2e-59
Alignment   gi|XP_856156.1| PREDICTED: similar to amyloid beta (A4) precurs...   227   2e-59
Alignment   gi|NP_001006601.1| amyloid beta A4 protein [Canis lupus familia...   180   3e-45
Alignment   gi|XP_536530.2| PREDICTED: similar to Amyloid-like protein 2 pr...   176   4e-44
Alignment   gi|XP_856859.1| PREDICTED: similar to Amyloid-like protein 2 pr...   176   4e-44
Alignment   gi|XP_856781.1| PREDICTED: similar to Amyloid-like protein 2 pr...   176   4e-44
Alignment   gi|XP_856735.1| PREDICTED: similar to Amyloid-like protein 2 pr...   176   4e-44

>ref|XP_533688.2| PREDICTED: similar to Amyloid-like protein 1 precursor (APLP)
            (APLP-1) [Canis familiaris].
          Length = 834

 Score =  552 bits (1422), Expect = e-157
 Identities = 275/369 (74%), Positives = 283/369 (76%), Gaps = 6/369 (1%)
 Frame = +3

Query: 60   GRAGVQGT*GREGRDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 239
            GRAG QGT GREGRDM                                            
Sbjct: 179  GRAGAQGTRGREGRDMGPSSPAARGLGRRRGPPPLPLSLPLLLLLLRAQLAVGSLAGGSP 238

Query: 240  XXX------QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIA 401
                     QVAGLC   TLHRDLRTGRWEPDPQ SRRCLRDPQRVLEYCRQMYPELQIA
Sbjct: 239  GAAEAPGSAQVAGLCRHLTLHRDLRTGRWEPDPQRSRRCLRDPQRVLEYCRQMYPELQIA 298

Query: 402  RVEQATQAIPMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMD 581
            RVEQATQAIPME+WCG ARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMD
Sbjct: 299  RVEQATQAIPMERWCGGARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMD 358

Query: 582  QCESSTRRHQEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGTAVGD 761
            QCESSTRRHQEAQEAC+SQGLILHGSGMLLPCG DRFRGVEYVCCPPP TP+PSGTA GD
Sbjct: 359  QCESSTRRHQEAQEACSSQGLILHGSGMLLPCGTDRFRGVEYVCCPPPVTPDPSGTAAGD 418

Query: 762  PSTRSWPLXXXXXXXXXXXXXXSFLQPVDDYFVEPPRAXXXXXXXKVPPASSHTPAGVSK 941
            PSTRSWPL              SFLQPVDDYFVEPPRA       ++ P+SSH+PAGVSK
Sbjct: 419  PSTRSWPLGGRVEGAEEEEEEESFLQPVDDYFVEPPRAEEEDEEERILPSSSHSPAGVSK 478

Query: 942  VTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLP 1121
            VT TPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQS+NLP
Sbjct: 479  VTTTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSKNLP 538

Query: 1122 KADRQALNE 1148
            KADRQALNE
Sbjct: 539  KADRQALNE 547


>ref|XP_856822.1| PREDICTED: similar to amyloid beta (A4) precursor-like protein 2
            isoform 25 [Canis familiaris].
          Length = 695

 Score =  227 bits (578), Expect = 2e-59
 Identities = 124/345 (35%), Positives = 181/345 (52%), Gaps = 31/345 (8%)
 Frame = +3

Query: 249  QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
            Q+A  CG+  +H +++TG+WEPDP  +++C    + VL+YC++MYPELQI  V +A + +
Sbjct: 51   QIAVFCGKLNMHVNIQTGKWEPDPTGTKKCFGTKEEVLQYCQEMYPELQITNVMEANEPV 110

Query: 429  PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
             ++ WC   R  +     H VVPF+CL GEFVS+ LLVPE C+F H+E+M+ CE+    H
Sbjct: 111  SVDNWC---RRDKKQCKTHVVVPFKCLVGEFVSDVLLVPEKCQFSHKEQMEVCENHQHWH 167

Query: 609  QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGTAVGDPSTRSWPLX 788
               +EAC +QG+ L+  GMLLPCG DRF G EYVCC  P T     T   +         
Sbjct: 168  TVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCC--PQTKTVESTVSKEEEEDEDEEE 225

Query: 789  XXXXXXXXXXXXXSFLQPVD--------------------------DYFVEPPRAXXXXX 890
                          F    D                          DY+ +  +      
Sbjct: 226  EEDEEEDYDIYKSEFPTEADLEDFTEAAVDEDDEDEEEGEEVVEDRDYYYDTFKGDDYND 285

Query: 891  XXKVPPASSHTPAGVS-----KVTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERR 1055
                 P+S  T +        KV PTP PT+ VDVYF    + +EH  F +AK  LE R 
Sbjct: 286  ENPTEPSSDGTISEKEITHDVKVPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRH 345

Query: 1056 MRQINEVMREWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
              +++ V +EW  A+ Q++NLPKA+RQ L +HFQ++++ LE++ +
Sbjct: 346  RNRMDRVKKEWEEAELQAKNLPKAERQTLIQHFQAMVKALEKEAA 390


>ref|XP_856660.1| PREDICTED: similar to amyloid beta (A4) precursor-like protein 2
            isoform 21 [Canis familiaris].
          Length = 707

 Score =  227 bits (578), Expect = 2e-59
 Identities = 124/345 (35%), Positives = 181/345 (52%), Gaps = 31/345 (8%)
 Frame = +3

Query: 249  QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
            Q+A  CG+  +H +++TG+WEPDP  +++C    + VL+YC++MYPELQI  V +A + +
Sbjct: 51   QIAVFCGKLNMHVNIQTGKWEPDPTGTKKCFGTKEEVLQYCQEMYPELQITNVMEANEPV 110

Query: 429  PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
             ++ WC   R  +     H VVPF+CL GEFVS+ LLVPE C+F H+E+M+ CE+    H
Sbjct: 111  SVDNWC---RRDKKQCKTHVVVPFKCLVGEFVSDVLLVPEKCQFSHKEQMEVCENHQHWH 167

Query: 609  QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGTAVGDPSTRSWPLX 788
               +EAC +QG+ L+  GMLLPCG DRF G EYVCC  P T     T   +         
Sbjct: 168  TVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCC--PQTKTVESTVSKEEEEDEDEEE 225

Query: 789  XXXXXXXXXXXXXSFLQPVD--------------------------DYFVEPPRAXXXXX 890
                          F    D                          DY+ +  +      
Sbjct: 226  EEDEEEDYDIYKSEFPTEADLEDFTEAAVDEDDEDEEEGEEVVEDRDYYYDTFKGDDYND 285

Query: 891  XXKVPPASSHTPAGVS-----KVTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERR 1055
                 P+S  T +        KV PTP PT+ VDVYF    + +EH  F +AK  LE R 
Sbjct: 286  ENPTEPSSDGTISEKEITHDVKVPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRH 345

Query: 1056 MRQINEVMREWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
              +++ V +EW  A+ Q++NLPKA+RQ L +HFQ++++ LE++ +
Sbjct: 346  RNRMDRVKKEWEEAELQAKNLPKAERQTLIQHFQAMVKALEKEAA 390


>ref|XP_856368.1| PREDICTED: similar to amyloid beta (A4) precursor-like protein 2
            isoform 14 [Canis familiaris].
          Length = 682

 Score =  227 bits (578), Expect = 2e-59
 Identities = 124/345 (35%), Positives = 181/345 (52%), Gaps = 31/345 (8%)
 Frame = +3

Query: 249  QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
            Q+A  CG+  +H +++TG+WEPDP  +++C    + VL+YC++MYPELQI  V +A + +
Sbjct: 51   QIAVFCGKLNMHVNIQTGKWEPDPTGTKKCFGTKEEVLQYCQEMYPELQITNVMEANEPV 110

Query: 429  PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
             ++ WC   R  +     H VVPF+CL GEFVS+ LLVPE C+F H+E+M+ CE+    H
Sbjct: 111  SVDNWC---RRDKKQCKTHVVVPFKCLVGEFVSDVLLVPEKCQFSHKEQMEVCENHQHWH 167

Query: 609  QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGTAVGDPSTRSWPLX 788
               +EAC +QG+ L+  GMLLPCG DRF G EYVCC  P T     T   +         
Sbjct: 168  TVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCC--PQTKTVESTVSKEEEEDEDEEE 225

Query: 789  XXXXXXXXXXXXXSFLQPVD--------------------------DYFVEPPRAXXXXX 890
                          F    D                          DY+ +  +      
Sbjct: 226  EEDEEEDYDIYKSEFPTEADLEDFTEAAVDEDDEDEEEGEEVVEDRDYYYDTFKGDDYND 285

Query: 891  XXKVPPASSHTPAGVS-----KVTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERR 1055
                 P+S  T +        KV PTP PT+ VDVYF    + +EH  F +AK  LE R 
Sbjct: 286  ENPTEPSSDGTISEKEITHDVKVPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRH 345

Query: 1056 MRQINEVMREWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
              +++ V +EW  A+ Q++NLPKA+RQ L +HFQ++++ LE++ +
Sbjct: 346  RNRMDRVKKEWEEAELQAKNLPKAERQTLIQHFQAMVKALEKEAA 390


>ref|XP_856156.1| PREDICTED: similar to amyloid beta (A4) precursor-like protein 2
            isoform 9 [Canis familiaris].
          Length = 699

 Score =  227 bits (578), Expect = 2e-59
 Identities = 122/335 (36%), Positives = 179/335 (53%), Gaps = 21/335 (6%)
 Frame = +3

Query: 249  QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
            Q+A  CG+  +H +++TG+WEPDP  +++C    + VL+YC++MYPELQI  V +A + +
Sbjct: 51   QIAVFCGKLNMHVNIQTGKWEPDPTGTKKCFGTKEEVLQYCQEMYPELQITNVMEANEPV 110

Query: 429  PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
             ++ WC   R  +     H VVPF+CL GEFVS+ LLVPE C+F H+E+M+ CE+    H
Sbjct: 111  SVDNWC---RRDKKQCKTHVVVPFKCLVGEFVSDVLLVPEKCQFSHKEQMEVCENHQHWH 167

Query: 609  QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGTA-------VGDPS 767
               +EAC +QG+ L+  GMLLPCG DRF G EYVCCP   T   + +          +  
Sbjct: 168  TVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCCPQTKTVESTVSKEEEEDEDEEEEE 227

Query: 768  TRSWPLXXXXXXXXXXXXXXSFLQPVDDYFVEPPRAXXXXXXXKVPPASSHTPA-GVSK- 941
                                 F +   D   E               A  H+P  G S  
Sbjct: 228  DEEEDYDIYKSEFPTEADLEDFTEAAVDEDDEDEEEGEEVVEDPYVGAKRHSPGFGTSSL 287

Query: 942  ------------VTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMRE 1085
                        + PTP PT+ VDVYF    + +EH  F +AK  LE R   +++ V +E
Sbjct: 288  SADVMTQQVVRAIPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKE 347

Query: 1086 WAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
            W  A+ Q++NLPKA+RQ L +HFQ++++ LE++ +
Sbjct: 348  WEEAELQAKNLPKAERQTLIQHFQAMVKALEKEAA 382


>ref|NP_001006601.1| amyloid beta A4 protein [Canis lupus familiaris].
          Length = 770

 Score =  180 bits (456), Expect = 3e-45
 Identities = 79/157 (50%), Positives = 110/157 (70%)
 Frame = +3

Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
           QVA LCG+  +H +++ G+WE DP  ++ C+   + +L+YC+++YPELQI  V +A Q +
Sbjct: 33  QVAMLCGKLRMHMNVQNGKWESDPLGTKTCIGSKEDILQYCQEVYPELQITNVVEANQPV 92

Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
            ++ WC   R  +C    H V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+    H
Sbjct: 93  TIQNWCKKGRK-QCKTHAHIVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151

Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
             A+E C+ +   LH  GMLLPCG D+FRGVE+VCCP
Sbjct: 152 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 188



 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 36/90 (40%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = +3

Query: 924  PAGVSKVTPTPRPT-DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMAD 1100
            P    K+  T   T D VD Y   PG+ +EH  F +AK  LE +   ++++VMREW  A+
Sbjct: 358  PQDAVKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAE 417

Query: 1101 NQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
             Q++NLPKAD++A+ +HFQ  +++LE++ +
Sbjct: 418  RQAKNLPKADKKAVIQHFQEKVESLEQEAA 447


>ref|XP_536530.2| PREDICTED: similar to Amyloid-like protein 2 precursor (Amyloid
           protein homolog) (APPH) (CDEI-box binding protein)
           (CDEBP) isoform 1 [Canis familiaris].
          Length = 763

 Score =  176 bits (446), Expect = 4e-44
 Identities = 78/161 (48%), Positives = 109/161 (67%)
 Frame = +3

Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
           Q+A  CG+  +H +++TG+WEPDP  +++C    + VL+YC++MYPELQI  V +A + +
Sbjct: 51  QIAVFCGKLNMHVNIQTGKWEPDPTGTKKCFGTKEEVLQYCQEMYPELQITNVMEANEPV 110

Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
            ++ WC   R  +     H VVPF+CL GEFVS+ LLVPE C+F H+E+M+ CE+    H
Sbjct: 111 SVDNWC---RRDKKQCKTHVVVPFKCLVGEFVSDVLLVPEKCQFSHKEQMEVCENHQHWH 167

Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPAT 731
              +EAC +QG+ L+  GMLLPCG DRF G EYVCCP   T
Sbjct: 168 TVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCCPQTKT 208



 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 36/83 (43%), Positives = 57/83 (68%)
 Frame = +3

Query: 942  VTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLP 1121
            + PTP PT+ VDVYF    + +EH  F +AK  LE R   +++ V +EW  A+ Q++NLP
Sbjct: 364  IPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLP 423

Query: 1122 KADRQALNEHFQSILQTLEEQVS 1190
            KA+RQ L +HFQ++++ LE++ +
Sbjct: 424  KAERQTLIQHFQAMVKALEKEAA 446


>ref|XP_856859.1| PREDICTED: similar to Amyloid-like protein 2 precursor (Amyloid
           protein homolog) (APPH) (CDEI-box binding protein)
           (CDEBP) isoform 26 [Canis familiaris].
          Length = 755

 Score =  176 bits (446), Expect = 4e-44
 Identities = 78/161 (48%), Positives = 109/161 (67%)
 Frame = +3

Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
           Q+A  CG+  +H +++TG+WEPDP  +++C    + VL+YC++MYPELQI  V +A + +
Sbjct: 51  QIAVFCGKLNMHVNIQTGKWEPDPTGTKKCFGTKEEVLQYCQEMYPELQITNVMEANEPV 110

Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
            ++ WC   R  +     H VVPF+CL GEFVS+ LLVPE C+F H+E+M+ CE+    H
Sbjct: 111 SVDNWC---RRDKKQCKTHVVVPFKCLVGEFVSDVLLVPEKCQFSHKEQMEVCENHQHWH 167

Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPAT 731
              +EAC +QG+ L+  GMLLPCG DRF G EYVCCP   T
Sbjct: 168 TVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCCPQTKT 208



 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 36/83 (43%), Positives = 57/83 (68%)
 Frame = +3

Query: 942  VTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLP 1121
            + PTP PT+ VDVYF    + +EH  F +AK  LE R   +++ V +EW  A+ Q++NLP
Sbjct: 368  IPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLP 427

Query: 1122 KADRQALNEHFQSILQTLEEQVS 1190
            KA+RQ L +HFQ++++ LE++ +
Sbjct: 428  KAERQTLIQHFQAMVKALEKEAA 450


>ref|XP_856781.1| PREDICTED: similar to Amyloid-like protein 2 precursor (Amyloid
           protein homolog) (APPH) (CDEI-box binding protein)
           (CDEBP) isoform 24 [Canis familiaris].
          Length = 732

 Score =  176 bits (446), Expect = 4e-44
 Identities = 78/161 (48%), Positives = 109/161 (67%)
 Frame = +3

Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
           Q+A  CG+  +H +++TG+WEPDP  +++C    + VL+YC++MYPELQI  V +A + +
Sbjct: 51  QIAVFCGKLNMHVNIQTGKWEPDPTGTKKCFGTKEEVLQYCQEMYPELQITNVMEANEPV 110

Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
            ++ WC   R  +     H VVPF+CL GEFVS+ LLVPE C+F H+E+M+ CE+    H
Sbjct: 111 SVDNWC---RRDKKQCKTHVVVPFKCLVGEFVSDVLLVPEKCQFSHKEQMEVCENHQHWH 167

Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPAT 731
              +EAC +QG+ L+  GMLLPCG DRF G EYVCCP   T
Sbjct: 168 TVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCCPQTKT 208



 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 36/83 (43%), Positives = 57/83 (68%)
 Frame = +3

Query: 942  VTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLP 1121
            + PTP PT+ VDVYF    + +EH  F +AK  LE R   +++ V +EW  A+ Q++NLP
Sbjct: 345  IPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLP 404

Query: 1122 KADRQALNEHFQSILQTLEEQVS 1190
            KA+RQ L +HFQ++++ LE++ +
Sbjct: 405  KAERQTLIQHFQAMVKALEKEAA 427


>ref|XP_856735.1| PREDICTED: similar to Amyloid-like protein 2 precursor (Amyloid
           protein homolog) (APPH) (CDEI-box binding protein)
           (CDEBP) isoform 23 [Canis familiaris].
          Length = 770

 Score =  176 bits (446), Expect = 4e-44
 Identities = 78/161 (48%), Positives = 109/161 (67%)
 Frame = +3

Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
           Q+A  CG+  +H +++TG+WEPDP  +++C    + VL+YC++MYPELQI  V +A + +
Sbjct: 51  QIAVFCGKLNMHVNIQTGKWEPDPTGTKKCFGTKEEVLQYCQEMYPELQITNVMEANEPV 110

Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
            ++ WC   R  +     H VVPF+CL GEFVS+ LLVPE C+F H+E+M+ CE+    H
Sbjct: 111 SVDNWC---RRDKKQCKTHVVVPFKCLVGEFVSDVLLVPEKCQFSHKEQMEVCENHQHWH 167

Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPAT 731
              +EAC +QG+ L+  GMLLPCG DRF G EYVCCP   T
Sbjct: 168 TVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCCPQTKT 208



 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 40/95 (42%), Positives = 61/95 (64%)
 Frame = +3

Query: 906  PASSHTPAGVSKVTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMRE 1085
            PA    P G+    PTP PT+ VDVYF    + +EH  F +AK  LE R   +++ V +E
Sbjct: 374  PAWQRCPVGLP---PTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKE 430

Query: 1086 WAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
            W  A+ Q++NLPKA+RQ L +HFQ++++ LE++ +
Sbjct: 431  WEEAELQAKNLPKAERQTLIQHFQAMVKALEKEAA 465


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,486,272
Number of extensions: 1760575
Number of successful extensions: 12686
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 12320
Number of HSP's successfully gapped: 52
Length of query: 397
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 292
Effective length of database: 15,374,224
Effective search space: 4489273408
Effective search space used: 4489273408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003503
         (1192 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_005157.1| amyloid-like protein 1 isoform 2 precursor [Hom...   563   e-160
Alignment   gi|NP_001019978.1| amyloid-like protein 1 isoform 1 precursor [...   563   e-160
Alignment   gi|NP_958817.1| amyloid beta A4 protein isoform c precursor [Ho...   227   1e-59
Alignment   gi|NP_001191232.1| amyloid beta A4 protein isoform j precursor ...   227   1e-59
Alignment   gi|NP_001129603.1| amyloid beta A4 protein isoform g [Homo sapi...   224   2e-58
Alignment   gi|NP_001129601.1| amyloid beta A4 protein isoform e precursor ...   188   1e-47
Alignment   gi|NP_001129488.1| amyloid beta A4 protein isoform d [Homo sapi...   181   2e-45
Alignment   gi|NP_958816.1| amyloid beta A4 protein isoform b precursor [Ho...   181   2e-45
Alignment   gi|NP_000475.1| amyloid beta A4 protein isoform a precursor [Ho...   181   2e-45
Alignment   gi|NP_001191231.1| amyloid beta A4 protein isoform i precursor ...   181   2e-45

>ref|NP_005157.1| amyloid-like protein 1 isoform 2 precursor [Homo sapiens].
          Length = 650

 Score =  563 bits (1451), Expect = e-160
 Identities = 272/314 (86%), Positives = 280/314 (89%)
 Frame = +3

Query: 249  QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
            QVAGLCGR TLHRDLRTGRWEPDPQ SRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI
Sbjct: 55   QVAGLCGRLTLHRDLRTGRWEPDPQRSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 114

Query: 429  PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
            PME+WCG +R G CAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH
Sbjct: 115  PMERWCGGSRSGSCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 174

Query: 609  QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGTAVGDPSTRSWPLX 788
            QEAQEAC+SQGLILHGSGMLLPCG+DRFRGVEYVCCPPP TP+PSGTAVGDPSTRSWP  
Sbjct: 175  QEAQEACSSQGLILHGSGMLLPCGSDRFRGVEYVCCPPPGTPDPSGTAVGDPSTRSWPPG 234

Query: 789  XXXXXXXXXXXXXSFLQPVDDYFVEPPRAXXXXXXXKVPPASSHTPAGVSKVTPTPRPTD 968
                         SF QPVDDYFVEPP+A        VPP SSHT A V KVTPTPRPTD
Sbjct: 235  SRVEGAEDEEEEESFPQPVDDYFVEPPQA--EEEEETVPPPSSHTLAVVGKVTPTPRPTD 292

Query: 969  GVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLPKADRQALNE 1148
            GVD+YFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQS+NLPKADRQALNE
Sbjct: 293  GVDIYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSKNLPKADRQALNE 352

Query: 1149 HFQSILQTLEEQVS 1190
            HFQSILQTLEEQVS
Sbjct: 353  HFQSILQTLEEQVS 366


>ref|NP_001019978.1| amyloid-like protein 1 isoform 1 precursor [Homo sapiens].
          Length = 651

 Score =  563 bits (1451), Expect = e-160
 Identities = 272/314 (86%), Positives = 280/314 (89%)
 Frame = +3

Query: 249  QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
            QVAGLCGR TLHRDLRTGRWEPDPQ SRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI
Sbjct: 55   QVAGLCGRLTLHRDLRTGRWEPDPQRSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 114

Query: 429  PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
            PME+WCG +R G CAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH
Sbjct: 115  PMERWCGGSRSGSCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 174

Query: 609  QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGTAVGDPSTRSWPLX 788
            QEAQEAC+SQGLILHGSGMLLPCG+DRFRGVEYVCCPPP TP+PSGTAVGDPSTRSWP  
Sbjct: 175  QEAQEACSSQGLILHGSGMLLPCGSDRFRGVEYVCCPPPGTPDPSGTAVGDPSTRSWPPG 234

Query: 789  XXXXXXXXXXXXXSFLQPVDDYFVEPPRAXXXXXXXKVPPASSHTPAGVSKVTPTPRPTD 968
                         SF QPVDDYFVEPP+A        VPP SSHT A V KVTPTPRPTD
Sbjct: 235  SRVEGAEDEEEEESFPQPVDDYFVEPPQA--EEEEETVPPPSSHTLAVVGKVTPTPRPTD 292

Query: 969  GVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLPKADRQALNE 1148
            GVD+YFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQS+NLPKADRQALNE
Sbjct: 293  GVDIYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSKNLPKADRQALNE 352

Query: 1149 HFQSILQTLEEQVS 1190
            HFQSILQTLEEQVS
Sbjct: 353  HFQSILQTLEEQVS 366


>ref|NP_958817.1| amyloid beta A4 protein isoform c precursor [Homo sapiens].
          Length = 695

 Score =  227 bits (579), Expect = 1e-59
 Identities = 121/341 (35%), Positives = 181/341 (53%), Gaps = 27/341 (7%)
 Frame = +3

Query: 249  QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
            Q+A  CGR  +H +++ G+W+ DP  ++ C+   + +L+YC+++YPELQI  V +A Q +
Sbjct: 33   QIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPV 92

Query: 429  PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
             ++ WC   R     HPH  V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+    H
Sbjct: 93   TIQNWCKRGRKQCKTHPHF-VIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151

Query: 609  QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPN--PSGTAVGDPSTRSWP 782
              A+E C+ +   LH  GMLLPCG D+FRGVE+VCCP     +   S  A  D S   W 
Sbjct: 152  TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVDSADAEEDDSDVWWG 211

Query: 783  LXXXXXXXXXXXXXXSFLQPVD---------------------DYFVEPPRAXXXXXXXK 899
                              +  +                     +   E P          
Sbjct: 212  GADTDYADGSEDKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEEAEEPYEEATERTTS 271

Query: 900  VPPASSHTPAGVSKVTPTPRPT----DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQI 1067
            +   ++ T   V +V   P       D VD Y   PG+ +EH  F +AK  LE +   ++
Sbjct: 272  IATTTTTTTESVEEVVRVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERM 331

Query: 1068 NEVMREWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
            ++VMREW  A+ Q++NLPKAD++A+ +HFQ  +++LE++ +
Sbjct: 332  SQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAA 372


>ref|NP_001191232.1| amyloid beta A4 protein isoform j precursor [Homo sapiens].
          Length = 677

 Score =  227 bits (579), Expect = 1e-59
 Identities = 121/341 (35%), Positives = 181/341 (53%), Gaps = 27/341 (7%)
 Frame = +3

Query: 249  QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
            Q+A  CGR  +H +++ G+W+ DP  ++ C+   + +L+YC+++YPELQI  V +A Q +
Sbjct: 33   QIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPV 92

Query: 429  PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
             ++ WC   R     HPH  V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+    H
Sbjct: 93   TIQNWCKRGRKQCKTHPHF-VIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151

Query: 609  QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPN--PSGTAVGDPSTRSWP 782
              A+E C+ +   LH  GMLLPCG D+FRGVE+VCCP     +   S  A  D S   W 
Sbjct: 152  TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVDSADAEEDDSDVWWG 211

Query: 783  LXXXXXXXXXXXXXXSFLQPVD---------------------DYFVEPPRAXXXXXXXK 899
                              +  +                     +   E P          
Sbjct: 212  GADTDYADGSEDKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEEAEEPYEEATERTTS 271

Query: 900  VPPASSHTPAGVSKVTPTPRPT----DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQI 1067
            +   ++ T   V +V   P       D VD Y   PG+ +EH  F +AK  LE +   ++
Sbjct: 272  IATTTTTTTESVEEVVRVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERM 331

Query: 1068 NEVMREWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
            ++VMREW  A+ Q++NLPKAD++A+ +HFQ  +++LE++ +
Sbjct: 332  SQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAA 372


>ref|NP_001129603.1| amyloid beta A4 protein isoform g [Homo sapiens].
          Length = 660

 Score =  224 bits (570), Expect = 2e-58
 Identities = 119/336 (35%), Positives = 178/336 (52%), Gaps = 27/336 (8%)
 Frame = +3

Query: 264  CGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAIPMEQW 443
            CGR  +H +++ G+W+ DP  ++ C+   + +L+YC+++YPELQI  V +A Q + ++ W
Sbjct: 3    CGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPVTIQNW 62

Query: 444  CGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRHQEAQE 623
            C   R     HPH  V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+    H  A+E
Sbjct: 63   CKRGRKQCKTHPHF-VIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWHTVAKE 121

Query: 624  ACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPN--PSGTAVGDPSTRSWPLXXXX 797
             C+ +   LH  GMLLPCG D+FRGVE+VCCP     +   S  A  D S   W      
Sbjct: 122  TCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVDSADAEEDDSDVWWGGADTD 181

Query: 798  XXXXXXXXXXSFLQPVD---------------------DYFVEPPRAXXXXXXXKVPPAS 914
                         +  +                     +   E P          +   +
Sbjct: 182  YADGSEDKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEEAEEPYEEATERTTSIATTT 241

Query: 915  SHTPAGVSKVTPTPRPT----DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMR 1082
            + T   V +V   P       D VD Y   PG+ +EH  F +AK  LE +   ++++VMR
Sbjct: 242  TTTTESVEEVVRVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMR 301

Query: 1083 EWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
            EW  A+ Q++NLPKAD++A+ +HFQ  +++LE++ +
Sbjct: 302  EWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAA 337


>ref|NP_001129601.1| amyloid beta A4 protein isoform e precursor [Homo sapiens].
          Length = 639

 Score =  188 bits (477), Expect = 1e-47
 Identities = 107/299 (35%), Positives = 153/299 (51%), Gaps = 27/299 (9%)
 Frame = +3

Query: 375  QMYPELQIARVEQATQAIPMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGC 554
            ++YPELQI  V +A Q + ++ WC   R     HPH  V+P+RCL GEFVS+ALLVP+ C
Sbjct: 19   EVYPELQITNVVEANQPVTIQNWCKRGRKQCKTHPHF-VIPYRCLVGEFVSDALLVPDKC 77

Query: 555  RFLHQERMDQCESSTRRHQEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATP 734
            +FLHQERMD CE+    H  A+E C+ +   LH  GMLLPCG D+FRGVE+VCCP     
Sbjct: 78   KFLHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEES 137

Query: 735  N--PSGTAVGDPSTRSWPLXXXXXXXXXXXXXXSFLQPVD-------------------- 848
            +   S  A  D S   W                   +  +                    
Sbjct: 138  DNVDSADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVAEVEEEEADDDEDDEDGDE 197

Query: 849  -DYFVEPPRAXXXXXXXKVPPASSHTPAGVSKVTPTPRPT----DGVDVYFGMPGEISEH 1013
             +   E P          +   ++ T   V +V   P       D VD Y   PG+ +EH
Sbjct: 198  VEEEAEEPYEEATERTTSIATTTTTTTESVEEVVRVPTTAASTPDAVDKYLETPGDENEH 257

Query: 1014 EGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
              F +AK  LE +   ++++VMREW  A+ Q++NLPKAD++A+ +HFQ  +++LE++ +
Sbjct: 258  AHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAA 316


>ref|NP_001129488.1| amyloid beta A4 protein isoform d [Homo sapiens].
          Length = 746

 Score =  181 bits (458), Expect = 2e-45
 Identities = 78/157 (49%), Positives = 109/157 (69%)
 Frame = +3

Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
           Q+A  CGR  +H +++ G+W+ DP  ++ C+   + +L+YC+++YPELQI  V +A Q +
Sbjct: 28  QIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPV 87

Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
            ++ WC   R     HPH  V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+    H
Sbjct: 88  TIQNWCKRGRKQCKTHPHF-VIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 146

Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
             A+E C+ +   LH  GMLLPCG D+FRGVE+VCCP
Sbjct: 147 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 183



 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 32/75 (42%), Positives = 53/75 (70%)
 Frame = +3

Query: 966  DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLPKADRQALN 1145
            D VD Y   PG+ +EH  F +AK  LE +   ++++VMREW  A+ Q++NLPKAD++A+ 
Sbjct: 349  DAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVI 408

Query: 1146 EHFQSILQTLEEQVS 1190
            +HFQ  +++LE++ +
Sbjct: 409  QHFQEKVESLEQEAA 423


>ref|NP_958816.1| amyloid beta A4 protein isoform b precursor [Homo sapiens].
          Length = 751

 Score =  181 bits (458), Expect = 2e-45
 Identities = 78/157 (49%), Positives = 109/157 (69%)
 Frame = +3

Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
           Q+A  CGR  +H +++ G+W+ DP  ++ C+   + +L+YC+++YPELQI  V +A Q +
Sbjct: 33  QIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPV 92

Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
            ++ WC   R     HPH  V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+    H
Sbjct: 93  TIQNWCKRGRKQCKTHPHF-VIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151

Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
             A+E C+ +   LH  GMLLPCG D+FRGVE+VCCP
Sbjct: 152 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 188



 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 32/75 (42%), Positives = 53/75 (70%)
 Frame = +3

Query: 966  DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLPKADRQALN 1145
            D VD Y   PG+ +EH  F +AK  LE +   ++++VMREW  A+ Q++NLPKAD++A+ 
Sbjct: 354  DAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVI 413

Query: 1146 EHFQSILQTLEEQVS 1190
            +HFQ  +++LE++ +
Sbjct: 414  QHFQEKVESLEQEAA 428


>ref|NP_000475.1| amyloid beta A4 protein isoform a precursor [Homo sapiens].
          Length = 770

 Score =  181 bits (458), Expect = 2e-45
 Identities = 78/157 (49%), Positives = 109/157 (69%)
 Frame = +3

Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
           Q+A  CGR  +H +++ G+W+ DP  ++ C+   + +L+YC+++YPELQI  V +A Q +
Sbjct: 33  QIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPV 92

Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
            ++ WC   R     HPH  V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+    H
Sbjct: 93  TIQNWCKRGRKQCKTHPHF-VIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151

Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
             A+E C+ +   LH  GMLLPCG D+FRGVE+VCCP
Sbjct: 152 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 188



 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 36/98 (36%), Positives = 60/98 (61%)
 Frame = +3

Query: 897  KVPPASSHTPAGVSKVTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEV 1076
            K+P  ++ TP             D VD Y   PG+ +EH  F +AK  LE +   ++++V
Sbjct: 363  KLPTTAASTP-------------DAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQV 409

Query: 1077 MREWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
            MREW  A+ Q++NLPKAD++A+ +HFQ  +++LE++ +
Sbjct: 410  MREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAA 447


>ref|NP_001191231.1| amyloid beta A4 protein isoform i precursor [Homo sapiens].
          Length = 733

 Score =  181 bits (458), Expect = 2e-45
 Identities = 78/157 (49%), Positives = 109/157 (69%)
 Frame = +3

Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
           Q+A  CGR  +H +++ G+W+ DP  ++ C+   + +L+YC+++YPELQI  V +A Q +
Sbjct: 33  QIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPV 92

Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
            ++ WC   R     HPH  V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+    H
Sbjct: 93  TIQNWCKRGRKQCKTHPHF-VIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151

Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
             A+E C+ +   LH  GMLLPCG D+FRGVE+VCCP
Sbjct: 152 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 188



 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 32/75 (42%), Positives = 53/75 (70%)
 Frame = +3

Query: 966  DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLPKADRQALN 1145
            D VD Y   PG+ +EH  F +AK  LE +   ++++VMREW  A+ Q++NLPKAD++A+ 
Sbjct: 354  DAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVI 413

Query: 1146 EHFQSILQTLEEQVS 1190
            +HFQ  +++LE++ +
Sbjct: 414  QHFQEKVESLEQEAA 428


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,258,654
Number of extensions: 1705331
Number of successful extensions: 11087
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 10889
Number of HSP's successfully gapped: 32
Length of query: 397
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 292
Effective length of database: 14,835,944
Effective search space: 4332095648
Effective search space used: 4332095648
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003503
         (1192 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_031493.2| amyloid-like protein 1 [Mus musculus].               556   e-158
Alignment   gi|NP_033821.1| amyloid-like protein 2 isoform c [Mus musculus].     234   8e-62
Alignment   gi|NP_001095926.1| amyloid-like protein 2 isoform b [Mus muscul...   234   8e-62
Alignment   gi|NP_031497.2| amyloid beta A4 protein isoform 2 precursor [Mu...   225   6e-59
Alignment   gi|NP_001095925.1| amyloid-like protein 2 isoform a [Mus muscul...   180   2e-45
Alignment   gi|NP_001185755.1| amyloid beta A4 protein isoform 6 precursor ...   178   6e-45
Alignment   gi|NP_001185754.1| amyloid beta A4 protein isoform 5 precursor ...   178   6e-45
Alignment   gi|NP_001185753.1| amyloid beta A4 protein isoform 3 precursor ...   178   6e-45
Alignment   gi|NP_001185752.1| amyloid beta A4 protein isoform 1 precursor ...   178   6e-45

>ref|NP_031493.2| amyloid-like protein 1 [Mus musculus].
          Length = 654

 Score =  556 bits (1433), Expect = e-158
 Identities = 267/316 (84%), Positives = 276/316 (87%), Gaps = 2/316 (0%)
 Frame = +3

Query: 249  QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
            QVAGLCGR TLHRDLRTGRWEPDPQ SRRCL DPQRVLEYCRQMYPEL IARVEQA QAI
Sbjct: 55   QVAGLCGRLTLHRDLRTGRWEPDPQRSRRCLLDPQRVLEYCRQMYPELHIARVEQAAQAI 114

Query: 429  PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
            PME+WCG  R GRCAHPHH+VVPF CLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH
Sbjct: 115  PMERWCGGTRSGRCAHPHHEVVPFHCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 174

Query: 609  QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGTAVGDPSTRSWPLX 788
            QEAQEAC+SQGLILHGSGMLLPCG+DRFRGVEYVCCPPPATPNPSG A GDPSTRSWPL 
Sbjct: 175  QEAQEACSSQGLILHGSGMLLPCGSDRFRGVEYVCCPPPATPNPSGMAAGDPSTRSWPLG 234

Query: 789  XXXXXXXXXXXXXSFLQPVDDYFVEPPRA--XXXXXXXKVPPASSHTPAGVSKVTPTPRP 962
                         SF QPVDDYFVEPP+A         + PP SSHTP  VS+VTPTPRP
Sbjct: 235  GRAEGGEDEEEVESFPQPVDDYFVEPPQAEEEEEEEEERAPPPSSHTPVMVSRVTPTPRP 294

Query: 963  TDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLPKADRQAL 1142
            TDGVDVYFGMPGEI EHEGFLRAKMDLEERRMRQINEVMREWAMAD+QS+NLPKADRQAL
Sbjct: 295  TDGVDVYFGMPGEIGEHEGFLRAKMDLEERRMRQINEVMREWAMADSQSKNLPKADRQAL 354

Query: 1143 NEHFQSILQTLEEQVS 1190
            NEHFQSILQTLEEQVS
Sbjct: 355  NEHFQSILQTLEEQVS 370


>ref|NP_033821.1| amyloid-like protein 2 isoform c [Mus musculus].
          Length = 695

 Score =  234 bits (598), Expect = 8e-62
 Identities = 125/343 (36%), Positives = 182/343 (53%), Gaps = 29/343 (8%)
 Frame = +3

Query: 249  QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
            Q+A  CG+  +H +++TG+WEPDP  ++ CL   + VL+YC+++YPELQI  V +A Q +
Sbjct: 51   QIAMFCGKLNMHVNIQTGKWEPDPTGTKSCLGTKEEVLQYCQEIYPELQITNVMEANQPV 110

Query: 429  PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
             ++ WC   R  +     H V+PF+CL GEFVS+ LLVP+ C+F HQERM+ CE   R H
Sbjct: 111  NIDSWC---RRDKRQCKSHIVIPFKCLVGEFVSDVLLVPDNCQFFHQERMEVCEKHQRWH 167

Query: 609  QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGT-------AVGDPS 767
               +EAC ++GL L+  GMLLPCG D+F G EYVCCP   T +   T          D  
Sbjct: 168  TLVKEACLTEGLTLYSYGMLLPCGVDQFHGTEYVCCPQTKTVDSDSTMSKEEEEEEEDEE 227

Query: 768  TRSWPLXXXXXXXXXXXXXXSFLQPV-----------------DDYFVEPPRAXXXXXXX 896
                                 F +                    DY+ +P +        
Sbjct: 228  DEEEDYDLDKSEFPTEADLEDFTEAAADEEEEDEEEGEEVVEDRDYYYDPFKGDDYNEEN 287

Query: 897  KVPPASSHTPAGVS-----KVTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMR 1061
               P+S  T +        KV PTP PT+ VDVYF    + +EH  F +AK  LE R   
Sbjct: 288  PTEPSSEGTISDKEIVHDVKVPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRN 347

Query: 1062 QINEVMREWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
            +++ V +EW  A+ Q++NLPK +RQ L +HFQ++++ LE++ +
Sbjct: 348  RMDRVKKEWEEAELQAKNLPKTERQTLIQHFQAMVKALEKEAA 390


>ref|NP_001095926.1| amyloid-like protein 2 isoform b [Mus musculus].
          Length = 707

 Score =  234 bits (598), Expect = 8e-62
 Identities = 125/343 (36%), Positives = 182/343 (53%), Gaps = 29/343 (8%)
 Frame = +3

Query: 249  QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
            Q+A  CG+  +H +++TG+WEPDP  ++ CL   + VL+YC+++YPELQI  V +A Q +
Sbjct: 51   QIAMFCGKLNMHVNIQTGKWEPDPTGTKSCLGTKEEVLQYCQEIYPELQITNVMEANQPV 110

Query: 429  PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
             ++ WC   R  +     H V+PF+CL GEFVS+ LLVP+ C+F HQERM+ CE   R H
Sbjct: 111  NIDSWC---RRDKRQCKSHIVIPFKCLVGEFVSDVLLVPDNCQFFHQERMEVCEKHQRWH 167

Query: 609  QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGT-------AVGDPS 767
               +EAC ++GL L+  GMLLPCG D+F G EYVCCP   T +   T          D  
Sbjct: 168  TLVKEACLTEGLTLYSYGMLLPCGVDQFHGTEYVCCPQTKTVDSDSTMSKEEEEEEEDEE 227

Query: 768  TRSWPLXXXXXXXXXXXXXXSFLQPV-----------------DDYFVEPPRAXXXXXXX 896
                                 F +                    DY+ +P +        
Sbjct: 228  DEEEDYDLDKSEFPTEADLEDFTEAAADEEEEDEEEGEEVVEDRDYYYDPFKGDDYNEEN 287

Query: 897  KVPPASSHTPAGVS-----KVTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMR 1061
               P+S  T +        KV PTP PT+ VDVYF    + +EH  F +AK  LE R   
Sbjct: 288  PTEPSSEGTISDKEIVHDVKVPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRN 347

Query: 1062 QINEVMREWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
            +++ V +EW  A+ Q++NLPK +RQ L +HFQ++++ LE++ +
Sbjct: 348  RMDRVKKEWEEAELQAKNLPKTERQTLIQHFQAMVKALEKEAA 390


>ref|NP_031497.2| amyloid beta A4 protein isoform 2 precursor [Mus musculus].
          Length = 695

 Score =  225 bits (573), Expect = 6e-59
 Identities = 124/341 (36%), Positives = 182/341 (53%), Gaps = 27/341 (7%)
 Frame = +3

Query: 249  QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
            Q+A  CG+  +H +++ G+WE DP  ++ C+   + +L+YC+++YPELQI  V +A Q +
Sbjct: 33   QIAMFCGKLNMHMNVQNGKWESDPSGTKTCIGTKEGILQYCQEVYPELQITNVVEANQPV 92

Query: 429  PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
             ++ WC   R  +C    H V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+    H
Sbjct: 93   TIQNWCKRGRK-QCKTHTHIVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151

Query: 609  QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP--PPATPNPSGTAVGDPSTRSWP 782
              A+E C+ +   LH  GMLLPCG D+FRGVE+VCCP    +    S  A  D S   W 
Sbjct: 152  TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDSVDSADAEEDDSDVWWG 211

Query: 783  LXXXXXXXXXXXXXXSFLQPV-----------DDYFVEPPRAXXXXXXXKVPPASSHTPA 929
                              +             DD  VE               A+  T +
Sbjct: 212  GADTDYADGGEDKVVEVAEEEEVADVEEEEADDDEDVEDGDEVEEEAEEPYEEATERTTS 271

Query: 930  GVSKVTPTPR--------PT------DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQI 1067
              +  T T          PT      D VD Y   PG+ +EH  F +AK  LE +   ++
Sbjct: 272  TATTTTTTTESVEEVVRVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERM 331

Query: 1068 NEVMREWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
            ++VMREW  A+ Q++NLPKAD++A+ +HFQ  +++LE++ +
Sbjct: 332  SQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAA 372


>ref|NP_001095925.1| amyloid-like protein 2 isoform a [Mus musculus].
          Length = 751

 Score =  180 bits (456), Expect = 2e-45
 Identities = 80/167 (47%), Positives = 111/167 (66%)
 Frame = +3

Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
           Q+A  CG+  +H +++TG+WEPDP  ++ CL   + VL+YC+++YPELQI  V +A Q +
Sbjct: 51  QIAMFCGKLNMHVNIQTGKWEPDPTGTKSCLGTKEEVLQYCQEIYPELQITNVMEANQPV 110

Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
            ++ WC   R  +     H V+PF+CL GEFVS+ LLVP+ C+F HQERM+ CE   R H
Sbjct: 111 NIDSWC---RRDKRQCKSHIVIPFKCLVGEFVSDVLLVPDNCQFFHQERMEVCEKHQRWH 167

Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGT 749
              +EAC ++GL L+  GMLLPCG D+F G EYVCCP   T +   T
Sbjct: 168 TLVKEACLTEGLTLYSYGMLLPCGVDQFHGTEYVCCPQTKTVDSDST 214



 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 35/83 (42%), Positives = 56/83 (67%)
 Frame = +3

Query: 942  VTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLP 1121
            + PTP PT+ VDVYF    + +EH  F +AK  LE R   +++ V +EW  A+ Q++NLP
Sbjct: 364  IPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLP 423

Query: 1122 KADRQALNEHFQSILQTLEEQVS 1190
            K +RQ L +HFQ++++ LE++ +
Sbjct: 424  KTERQTLIQHFQAMVKALEKEAA 446


>ref|NP_001185755.1| amyloid beta A4 protein isoform 6 precursor [Mus musculus].
          Length = 752

 Score =  178 bits (452), Expect = 6e-45
 Identities = 77/157 (49%), Positives = 109/157 (69%)
 Frame = +3

Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
           Q+A  CG+  +H +++ G+WE DP  ++ C+   + +L+YC+++YPELQI  V +A Q +
Sbjct: 33  QIAMFCGKLNMHMNVQNGKWESDPSGTKTCIGTKEGILQYCQEVYPELQITNVVEANQPV 92

Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
            ++ WC   R  +C    H V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+    H
Sbjct: 93  TIQNWCKRGRK-QCKTHTHIVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151

Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
             A+E C+ +   LH  GMLLPCG D+FRGVE+VCCP
Sbjct: 152 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 188



 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 37/94 (39%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
 Frame = +3

Query: 912  SSHTPAGVSKVTPTPRPT-DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREW 1088
            S   P    K+  T   T D VD Y   PG+ +EH  F +AK  LE +   ++++VMREW
Sbjct: 354  SEPLPQDPDKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREW 413

Query: 1089 AMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
              A+ Q++NLPKAD++A+ +HFQ  +++LE++ +
Sbjct: 414  EEAERQAKNLPKADKKAVIQHFQEKVESLEQEAA 447


>ref|NP_001185754.1| amyloid beta A4 protein isoform 5 precursor [Mus musculus].
          Length = 733

 Score =  178 bits (452), Expect = 6e-45
 Identities = 77/157 (49%), Positives = 109/157 (69%)
 Frame = +3

Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
           Q+A  CG+  +H +++ G+WE DP  ++ C+   + +L+YC+++YPELQI  V +A Q +
Sbjct: 33  QIAMFCGKLNMHMNVQNGKWESDPSGTKTCIGTKEGILQYCQEVYPELQITNVVEANQPV 92

Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
            ++ WC   R  +C    H V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+    H
Sbjct: 93  TIQNWCKRGRK-QCKTHTHIVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151

Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
             A+E C+ +   LH  GMLLPCG D+FRGVE+VCCP
Sbjct: 152 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 188



 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 32/75 (42%), Positives = 53/75 (70%)
 Frame = +3

Query: 966  DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLPKADRQALN 1145
            D VD Y   PG+ +EH  F +AK  LE +   ++++VMREW  A+ Q++NLPKAD++A+ 
Sbjct: 354  DAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVI 413

Query: 1146 EHFQSILQTLEEQVS 1190
            +HFQ  +++LE++ +
Sbjct: 414  QHFQEKVESLEQEAA 428


>ref|NP_001185753.1| amyloid beta A4 protein isoform 3 precursor [Mus musculus].
          Length = 751

 Score =  178 bits (452), Expect = 6e-45
 Identities = 77/157 (49%), Positives = 109/157 (69%)
 Frame = +3

Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
           Q+A  CG+  +H +++ G+WE DP  ++ C+   + +L+YC+++YPELQI  V +A Q +
Sbjct: 33  QIAMFCGKLNMHMNVQNGKWESDPSGTKTCIGTKEGILQYCQEVYPELQITNVVEANQPV 92

Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
            ++ WC   R  +C    H V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+    H
Sbjct: 93  TIQNWCKRGRK-QCKTHTHIVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151

Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
             A+E C+ +   LH  GMLLPCG D+FRGVE+VCCP
Sbjct: 152 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 188



 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 32/75 (42%), Positives = 53/75 (70%)
 Frame = +3

Query: 966  DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLPKADRQALN 1145
            D VD Y   PG+ +EH  F +AK  LE +   ++++VMREW  A+ Q++NLPKAD++A+ 
Sbjct: 354  DAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVI 413

Query: 1146 EHFQSILQTLEEQVS 1190
            +HFQ  +++LE++ +
Sbjct: 414  QHFQEKVESLEQEAA 428


>ref|NP_001185752.1| amyloid beta A4 protein isoform 1 precursor [Mus musculus].
          Length = 770

 Score =  178 bits (452), Expect = 6e-45
 Identities = 77/157 (49%), Positives = 109/157 (69%)
 Frame = +3

Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
           Q+A  CG+  +H +++ G+WE DP  ++ C+   + +L+YC+++YPELQI  V +A Q +
Sbjct: 33  QIAMFCGKLNMHMNVQNGKWESDPSGTKTCIGTKEGILQYCQEVYPELQITNVVEANQPV 92

Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
            ++ WC   R  +C    H V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+    H
Sbjct: 93  TIQNWCKRGRK-QCKTHTHIVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151

Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
             A+E C+ +   LH  GMLLPCG D+FRGVE+VCCP
Sbjct: 152 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 188



 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 37/94 (39%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
 Frame = +3

Query: 912  SSHTPAGVSKVTPTPRPT-DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREW 1088
            S   P    K+  T   T D VD Y   PG+ +EH  F +AK  LE +   ++++VMREW
Sbjct: 354  SEPLPQDPDKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREW 413

Query: 1089 AMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
              A+ Q++NLPKAD++A+ +HFQ  +++LE++ +
Sbjct: 414  EEAERQAKNLPKADKKAVIQHFQEKVESLEQEAA 447


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,589,696
Number of extensions: 1391690
Number of successful extensions: 8330
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 8192
Number of HSP's successfully gapped: 17
Length of query: 397
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 294
Effective length of database: 12,523,851
Effective search space: 3682012194
Effective search space used: 3682012194
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003503
         (1192 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003127129.1| PREDICTED: amyloid-like protein 1-like [Sus ...   282   2e-76
Alignment   gi|NP_999537.1| amyloid beta A4 protein [Sus scrofa].                179   3e-45
Alignment   gi|XP_003357409.1| PREDICTED: amyloid-like protein 2, partial [...   173   1e-43
Alignment   gi|XP_003358940.1| PREDICTED: amyloid beta A4 protein-like [Sus...    66   3e-11

>ref|XP_003127129.1| PREDICTED: amyloid-like protein 1-like [Sus scrofa].
          Length = 181

 Score =  282 bits (722), Expect = 2e-76
 Identities = 129/130 (99%), Positives = 130/130 (100%)
 Frame = +3

Query: 375 QMYPELQIARVEQATQAIPMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGC 554
           +MYPELQIARVEQATQAIPMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGC
Sbjct: 43  EMYPELQIARVEQATQAIPMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGC 102

Query: 555 RFLHQERMDQCESSTRRHQEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATP 734
           RFLHQERMDQCESSTRRHQEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATP
Sbjct: 103 RFLHQERMDQCESSTRRHQEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATP 162

Query: 735 NPSGTAVGDP 764
           NPSGTAVGDP
Sbjct: 163 NPSGTAVGDP 172


>ref|NP_999537.1| amyloid beta A4 protein [Sus scrofa].
          Length = 770

 Score =  179 bits (454), Expect = 3e-45
 Identities = 78/157 (49%), Positives = 110/157 (70%)
 Frame = +3

Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
           QVA  CG+  +H +++ G+WE DP  ++ C+   + +L+YC+++YPELQI  V +A Q +
Sbjct: 33  QVAMFCGKLNMHMNVQNGKWESDPSGTKTCIGTKEGILQYCQEVYPELQITNVVEANQPV 92

Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
            ++ WC  +R  +C    H V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+    H
Sbjct: 93  TIQNWCKRSRK-QCKTHTHIVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151

Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
             A+E C+ +   LH  GMLLPCG D+FRGVE+VCCP
Sbjct: 152 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 188



 Score = 76.3 bits (186), Expect = 3e-14
 Identities = 37/92 (40%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
 Frame = +3

Query: 918  HTPAGVSKVTPTPRPT-DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAM 1094
            H P    K+  T   T D VD Y   PG+ +EH  F +AK  LE +   ++++VMREW  
Sbjct: 356  HLPQDPVKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEE 415

Query: 1095 ADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
            A+ Q++NLPKAD++A+ +HFQ  +++LE++ +
Sbjct: 416  AERQAKNLPKADKKAVIQHFQEKVESLEQEAA 447


>ref|XP_003357409.1| PREDICTED: amyloid-like protein 2, partial [Sus scrofa].
          Length = 744

 Score =  173 bits (439), Expect = 1e-43
 Identities = 76/157 (48%), Positives = 106/157 (67%)
 Frame = +3

Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
           Q+A  CG+  +H +++TG+WEPDP  ++ C    + VL+YC++MYPELQI  V +A Q +
Sbjct: 51  QIAMFCGKLNMHVNIQTGKWEPDPTGTKSCFGTKEEVLQYCQEMYPELQITNVMEANQPV 110

Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
            ++ WC   R  +     H V+P +CL GEFVS+ LLVPE C+F H+ERM+ CE+    H
Sbjct: 111 RVDNWC---RRDKKQCKSHVVIPSKCLVGEFVSDVLLVPEKCQFFHKERMEVCENHQHWH 167

Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
              +EAC +QG+ L+  GMLLPCG D+F G EYVCCP
Sbjct: 168 TVVKEACLTQGMTLYSYGMLLPCGVDQFHGTEYVCCP 204



 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 36/83 (43%), Positives = 57/83 (68%)
 Frame = +3

Query: 942  VTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLP 1121
            + PTP PT+ VDVYF    + +EH  F +AK  LE R   +++ V +EW  A+ Q++NLP
Sbjct: 371  IPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLP 430

Query: 1122 KADRQALNEHFQSILQTLEEQVS 1190
            KA+RQ L +HFQ++++ LE++ +
Sbjct: 431  KAERQTLIQHFQAMVKALEKEAA 453


>ref|XP_003358940.1| PREDICTED: amyloid beta A4 protein-like [Sus scrofa].
          Length = 422

 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
 Frame = +3

Query: 918  HTPAGVSKVTPTPRPT-DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAM 1094
            H P    K+  T   T D VD Y   PG+ +EH  F +AK  LE +   ++++VMREW  
Sbjct: 71   HLPQDPVKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEE 130

Query: 1095 ADNQSQNLPKADRQALNEHFQSILQ 1169
            A+ Q++NLPKAD++A+ +  +S+ Q
Sbjct: 131  AERQAKNLPKADKKAVIQKVESLEQ 155


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,004,727
Number of extensions: 1117514
Number of successful extensions: 7472
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7366
Number of HSP's successfully gapped: 6
Length of query: 397
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 296
Effective length of database: 8,829,335
Effective search space: 2613483160
Effective search space used: 2613483160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003503
         (1192 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                         464   e-128

>Sscrofa_Chr06 
||          Length = 157765593

 Score =  464 bits (234), Expect = e-128
 Identities = 234/234 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        gggaggaggaggcggcggccgtggcgctgggagctcctgtcaccgctggggcctggctgg 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40668849 gggaggaggaggcggcggccgtggcgctgggagctcctgtcaccgctggggcctggctgg 40668908

                                                                            
Query: 61       gccgggcgggagtgcaggggacgtgagggcgcgagggccgggacatggggcccgccagcc 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40668909 gccgggcgggagtgcaggggacgtgagggcgcgagggccgggacatggggcccgccagcc 40668968

                                                                            
Query: 121      ccgccgctcgcggtctgggcccgctgcccttgttgctgccactattgctgctgcttttgc 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40668969 ccgccgctcgcggtctgggcccgctgcccttgttgctgccactattgctgctgcttttgc 40669028

                                                                      
Query: 181      gcgcgcagctcgccgtcgggagcctggccggtggaagccccagcgcagcagagg 234
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40669029 gcgcgcagctcgccgtcgggagcctggccggtggaagccccagcgcagcagagg 40669082



 Score =  270 bits (136), Expect = 2e-69
 Identities = 136/136 (100%)
 Strand = Plus / Plus

                                                                            
Query: 375      cagatgtacccggagctgcagattgcacgcgtggagcaggcaacgcaggccatccccatg 434
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40671166 cagatgtacccggagctgcagattgcacgcgtggagcaggcaacgcaggccatccccatg 40671225

                                                                            
Query: 435      gagcaatggtgcggggatgcccggggtggccgctgtgcccacccccaccaccaggttgtg 494
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40671226 gagcaatggtgcggggatgcccggggtggccgctgtgcccacccccaccaccaggttgtg 40671285

                                
Query: 495      cctttccgctgcctgc 510
                ||||||||||||||||
Sbjct: 40671286 cctttccgctgcctgc 40671301



 Score =  270 bits (136), Expect = 2e-69
 Identities = 136/136 (100%)
 Strand = Plus / Plus

                                                                            
Query: 622      aggcctgcaactctcagggcctcatcctgcatggctcgggcatgcttttgccctgtggcg 681
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40671866 aggcctgcaactctcagggcctcatcctgcatggctcgggcatgcttttgccctgtggcg 40671925

                                                                            
Query: 682      cggatcggttccgaggtgtggagtatgtgtgctgcccgcctccagcgacccccaacccat 741
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40671926 cggatcggttccgaggtgtggagtatgtgtgctgcccgcctccagcgacccccaacccat 40671985

                                
Query: 742      ctgggacagcagttgg 757
                ||||||||||||||||
Sbjct: 40671986 ctgggacagcagttgg 40672001



 Score =  226 bits (114), Expect = 2e-56
 Identities = 114/114 (100%)
 Strand = Plus / Plus

                                                                            
Query: 511      cgggtgaatttgtaagcgaggccctgctagtccctgaaggctgccggttcttgcaccagg 570
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40671519 cgggtgaatttgtaagcgaggccctgctagtccctgaaggctgccggttcttgcaccagg 40671578

                                                                      
Query: 571      agcgcatggaccagtgtgagagttcaacccggaggcatcaggaggcacaggagg 624
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40671579 agcgcatggaccagtgtgagagttcaacccggaggcatcaggaggcacaggagg 40671632



 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                                  
Query: 344      ggacccgcagcgcgtgctggagtactgcagacag 377
                ||||||||||| ||||||||||||||||||||||
Sbjct: 40669837 ggacccgcagcccgtgctggagtactgcagacag 40669870


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,787,575
Number of extensions: 543
Number of successful extensions: 543
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 543
Number of HSP's successfully gapped: 5
Length of query: 1192
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1171
Effective length of database: 2,808,413,156
Effective search space: 3288651805676
Effective search space used: 3288651805676
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)