Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003503
(1192 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033184.1| amyloid-like protein 1 [Bos taurus]. 581 e-166
Alignment gi|NP_001070264.1| amyloid beta A4 protein [Bos taurus]. 226 2e-59
Alignment gi|XP_002699281.1| PREDICTED: amyloid beta (A4) precursor-like ... 173 3e-43
Alignment gi|XP_001251235.1| PREDICTED: amyloid beta (A4) precursor-like ... 173 3e-43
>ref|NP_001033184.1| amyloid-like protein 1 [Bos taurus].
Length = 642
Score = 581 bits (1498), Expect = e-166
Identities = 280/314 (89%), Positives = 284/314 (90%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI
Sbjct: 49 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 108
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
PMEQWCG RGG CAHPHHQVVPF CLPGEFVSEALLVPEGCRFLHQERMDQCESS RR
Sbjct: 109 PMEQWCGGTRGGHCAHPHHQVVPFHCLPGEFVSEALLVPEGCRFLHQERMDQCESSARRQ 168
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGTAVGDPSTRSWPLX 788
QEAQEAC+SQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGTA GDPSTRSWP
Sbjct: 169 QEAQEACSSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGTAFGDPSTRSWPPG 228
Query: 789 XXXXXXXXXXXXXSFLQPVDDYFVEPPRAXXXXXXXKVPPASSHTPAGVSKVTPTPRPTD 968
SFLQPVDDYFVEPPRA +VPP+SS TPAGVSKVTPTPRPTD
Sbjct: 229 GRVERGDDEEEEESFLQPVDDYFVEPPRA-DEEEEDRVPPSSSQTPAGVSKVTPTPRPTD 287
Query: 969 GVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLPKADRQALNE 1148
GVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQS+NLPKADRQALNE
Sbjct: 288 GVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSKNLPKADRQALNE 347
Query: 1149 HFQSILQTLEEQVS 1190
HFQSILQTLEEQVS
Sbjct: 348 HFQSILQTLEEQVS 361
>ref|NP_001070264.1| amyloid beta A4 protein [Bos taurus].
Length = 695
Score = 226 bits (577), Expect = 2e-59
Identities = 121/341 (35%), Positives = 181/341 (53%), Gaps = 27/341 (7%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
QVA CG+ +H +++ G+WE DP ++ C+ + +L+YC+++YPELQI V +A Q +
Sbjct: 33 QVAMFCGKLNMHMNVQNGKWESDPSGTKTCIGTKEGILQYCQEVYPELQITNVVEANQPV 92
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R +C H V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+ H
Sbjct: 93 TIQNWCKRGRK-QCKTHAHMVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPN--PSGTAVGDPSTRSWP 782
A+E C+ + LH GMLLPCG D+FRGVE+VCCP + S A D S W
Sbjct: 152 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVDSADAEEDDSDVWWG 211
Query: 783 LXXXXXXXXXXXXXXSFLQPVD---------------------DYFVEPPRAXXXXXXXK 899
+ + + E P
Sbjct: 212 GADTDYADGSEDKVIEVAEEEEVADVEEEEADDEEDDEDGEELEEEAEEPYEEATERTTS 271
Query: 900 VPPASSHTPAGVSKVTPTPRPT----DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQI 1067
+ ++ T V +V P D VD Y PG+ +EH F +AK LE + ++
Sbjct: 272 IATTTTTTTESVEEVVRVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERM 331
Query: 1068 NEVMREWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
++VMREW A+ Q++NLPKAD++A+ +HFQ +++LE++ +
Sbjct: 332 SQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAA 372
>ref|XP_002699281.1| PREDICTED: amyloid beta (A4) precursor-like protein 2 [Bos taurus].
Length = 767
Score = 173 bits (438), Expect = 3e-43
Identities = 77/157 (49%), Positives = 105/157 (66%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CG+ +H +++TGRWEPDP ++ C + VL+YC++MYPELQI V +A Q +
Sbjct: 51 QIAMFCGKLNMHVNIQTGRWEPDPSGTQSCFGTKEEVLQYCQEMYPELQITNVMEANQPV 110
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R + H V+PF+CL GEFVS+ LLVPE C F H+ERM+ CE+ R H
Sbjct: 111 SVDNWC---RRDKKQCKSHIVIPFKCLVGEFVSDVLLVPEKCLFFHKERMEVCENHQRWH 167
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
+EAC +Q + L+ MLLPCG D+F G EYVCCP
Sbjct: 168 TVVKEACLTQEMTLYSYSMLLPCGVDQFHGTEYVCCP 204
Score = 79.7 bits (195), Expect = 5e-15
Identities = 36/83 (43%), Positives = 57/83 (68%)
Frame = +3
Query: 942 VTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLP 1121
+ PTP PT+ VDVYF + +EH F +AK LE R +++ V +EW A+ Q++NLP
Sbjct: 368 IPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLP 427
Query: 1122 KADRQALNEHFQSILQTLEEQVS 1190
KA+RQ L +HFQ++++ LE++ +
Sbjct: 428 KAERQTLIQHFQAMVKALEKEAA 450
>ref|XP_001251235.1| PREDICTED: amyloid beta (A4) precursor-like protein 2 [Bos taurus].
Length = 767
Score = 173 bits (438), Expect = 3e-43
Identities = 77/157 (49%), Positives = 105/157 (66%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CG+ +H +++TGRWEPDP ++ C + VL+YC++MYPELQI V +A Q +
Sbjct: 51 QIAMFCGKLNMHVNIQTGRWEPDPSGTQSCFGTKEEVLQYCQEMYPELQITNVMEANQPV 110
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R + H V+PF+CL GEFVS+ LLVPE C F H+ERM+ CE+ R H
Sbjct: 111 SVDNWC---RRDKKQCKSHIVIPFKCLVGEFVSDVLLVPEKCLFFHKERMEVCENHQRWH 167
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
+EAC +Q + L+ MLLPCG D+F G EYVCCP
Sbjct: 168 TVVKEACLTQEMTLYSYSMLLPCGVDQFHGTEYVCCP 204
Score = 79.7 bits (195), Expect = 5e-15
Identities = 36/83 (43%), Positives = 57/83 (68%)
Frame = +3
Query: 942 VTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLP 1121
+ PTP PT+ VDVYF + +EH F +AK LE R +++ V +EW A+ Q++NLP
Sbjct: 368 IPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLP 427
Query: 1122 KADRQALNEHFQSILQTLEEQVS 1190
KA+RQ L +HFQ++++ LE++ +
Sbjct: 428 KAERQTLIQHFQAMVKALEKEAA 450
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,484,719
Number of extensions: 1716987
Number of successful extensions: 11467
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 11311
Number of HSP's successfully gapped: 7
Length of query: 397
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 293
Effective length of database: 14,240,222
Effective search space: 4172385046
Effective search space used: 4172385046
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003503
(1192 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533688.2| PREDICTED: similar to Amyloid-like protein 1 pr... 552 e-157
Alignment gi|XP_856822.1| PREDICTED: similar to amyloid beta (A4) precurs... 227 2e-59
Alignment gi|XP_856660.1| PREDICTED: similar to amyloid beta (A4) precurs... 227 2e-59
Alignment gi|XP_856368.1| PREDICTED: similar to amyloid beta (A4) precurs... 227 2e-59
Alignment gi|XP_856156.1| PREDICTED: similar to amyloid beta (A4) precurs... 227 2e-59
Alignment gi|NP_001006601.1| amyloid beta A4 protein [Canis lupus familia... 180 3e-45
Alignment gi|XP_536530.2| PREDICTED: similar to Amyloid-like protein 2 pr... 176 4e-44
Alignment gi|XP_856859.1| PREDICTED: similar to Amyloid-like protein 2 pr... 176 4e-44
Alignment gi|XP_856781.1| PREDICTED: similar to Amyloid-like protein 2 pr... 176 4e-44
Alignment gi|XP_856735.1| PREDICTED: similar to Amyloid-like protein 2 pr... 176 4e-44
>ref|XP_533688.2| PREDICTED: similar to Amyloid-like protein 1 precursor (APLP)
(APLP-1) [Canis familiaris].
Length = 834
Score = 552 bits (1422), Expect = e-157
Identities = 275/369 (74%), Positives = 283/369 (76%), Gaps = 6/369 (1%)
Frame = +3
Query: 60 GRAGVQGT*GREGRDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 239
GRAG QGT GREGRDM
Sbjct: 179 GRAGAQGTRGREGRDMGPSSPAARGLGRRRGPPPLPLSLPLLLLLLRAQLAVGSLAGGSP 238
Query: 240 XXX------QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIA 401
QVAGLC TLHRDLRTGRWEPDPQ SRRCLRDPQRVLEYCRQMYPELQIA
Sbjct: 239 GAAEAPGSAQVAGLCRHLTLHRDLRTGRWEPDPQRSRRCLRDPQRVLEYCRQMYPELQIA 298
Query: 402 RVEQATQAIPMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMD 581
RVEQATQAIPME+WCG ARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMD
Sbjct: 299 RVEQATQAIPMERWCGGARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMD 358
Query: 582 QCESSTRRHQEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGTAVGD 761
QCESSTRRHQEAQEAC+SQGLILHGSGMLLPCG DRFRGVEYVCCPPP TP+PSGTA GD
Sbjct: 359 QCESSTRRHQEAQEACSSQGLILHGSGMLLPCGTDRFRGVEYVCCPPPVTPDPSGTAAGD 418
Query: 762 PSTRSWPLXXXXXXXXXXXXXXSFLQPVDDYFVEPPRAXXXXXXXKVPPASSHTPAGVSK 941
PSTRSWPL SFLQPVDDYFVEPPRA ++ P+SSH+PAGVSK
Sbjct: 419 PSTRSWPLGGRVEGAEEEEEEESFLQPVDDYFVEPPRAEEEDEEERILPSSSHSPAGVSK 478
Query: 942 VTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLP 1121
VT TPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQS+NLP
Sbjct: 479 VTTTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSKNLP 538
Query: 1122 KADRQALNE 1148
KADRQALNE
Sbjct: 539 KADRQALNE 547
>ref|XP_856822.1| PREDICTED: similar to amyloid beta (A4) precursor-like protein 2
isoform 25 [Canis familiaris].
Length = 695
Score = 227 bits (578), Expect = 2e-59
Identities = 124/345 (35%), Positives = 181/345 (52%), Gaps = 31/345 (8%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CG+ +H +++TG+WEPDP +++C + VL+YC++MYPELQI V +A + +
Sbjct: 51 QIAVFCGKLNMHVNIQTGKWEPDPTGTKKCFGTKEEVLQYCQEMYPELQITNVMEANEPV 110
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R + H VVPF+CL GEFVS+ LLVPE C+F H+E+M+ CE+ H
Sbjct: 111 SVDNWC---RRDKKQCKTHVVVPFKCLVGEFVSDVLLVPEKCQFSHKEQMEVCENHQHWH 167
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGTAVGDPSTRSWPLX 788
+EAC +QG+ L+ GMLLPCG DRF G EYVCC P T T +
Sbjct: 168 TVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCC--PQTKTVESTVSKEEEEDEDEEE 225
Query: 789 XXXXXXXXXXXXXSFLQPVD--------------------------DYFVEPPRAXXXXX 890
F D DY+ + +
Sbjct: 226 EEDEEEDYDIYKSEFPTEADLEDFTEAAVDEDDEDEEEGEEVVEDRDYYYDTFKGDDYND 285
Query: 891 XXKVPPASSHTPAGVS-----KVTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERR 1055
P+S T + KV PTP PT+ VDVYF + +EH F +AK LE R
Sbjct: 286 ENPTEPSSDGTISEKEITHDVKVPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRH 345
Query: 1056 MRQINEVMREWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
+++ V +EW A+ Q++NLPKA+RQ L +HFQ++++ LE++ +
Sbjct: 346 RNRMDRVKKEWEEAELQAKNLPKAERQTLIQHFQAMVKALEKEAA 390
>ref|XP_856660.1| PREDICTED: similar to amyloid beta (A4) precursor-like protein 2
isoform 21 [Canis familiaris].
Length = 707
Score = 227 bits (578), Expect = 2e-59
Identities = 124/345 (35%), Positives = 181/345 (52%), Gaps = 31/345 (8%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CG+ +H +++TG+WEPDP +++C + VL+YC++MYPELQI V +A + +
Sbjct: 51 QIAVFCGKLNMHVNIQTGKWEPDPTGTKKCFGTKEEVLQYCQEMYPELQITNVMEANEPV 110
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R + H VVPF+CL GEFVS+ LLVPE C+F H+E+M+ CE+ H
Sbjct: 111 SVDNWC---RRDKKQCKTHVVVPFKCLVGEFVSDVLLVPEKCQFSHKEQMEVCENHQHWH 167
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGTAVGDPSTRSWPLX 788
+EAC +QG+ L+ GMLLPCG DRF G EYVCC P T T +
Sbjct: 168 TVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCC--PQTKTVESTVSKEEEEDEDEEE 225
Query: 789 XXXXXXXXXXXXXSFLQPVD--------------------------DYFVEPPRAXXXXX 890
F D DY+ + +
Sbjct: 226 EEDEEEDYDIYKSEFPTEADLEDFTEAAVDEDDEDEEEGEEVVEDRDYYYDTFKGDDYND 285
Query: 891 XXKVPPASSHTPAGVS-----KVTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERR 1055
P+S T + KV PTP PT+ VDVYF + +EH F +AK LE R
Sbjct: 286 ENPTEPSSDGTISEKEITHDVKVPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRH 345
Query: 1056 MRQINEVMREWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
+++ V +EW A+ Q++NLPKA+RQ L +HFQ++++ LE++ +
Sbjct: 346 RNRMDRVKKEWEEAELQAKNLPKAERQTLIQHFQAMVKALEKEAA 390
>ref|XP_856368.1| PREDICTED: similar to amyloid beta (A4) precursor-like protein 2
isoform 14 [Canis familiaris].
Length = 682
Score = 227 bits (578), Expect = 2e-59
Identities = 124/345 (35%), Positives = 181/345 (52%), Gaps = 31/345 (8%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CG+ +H +++TG+WEPDP +++C + VL+YC++MYPELQI V +A + +
Sbjct: 51 QIAVFCGKLNMHVNIQTGKWEPDPTGTKKCFGTKEEVLQYCQEMYPELQITNVMEANEPV 110
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R + H VVPF+CL GEFVS+ LLVPE C+F H+E+M+ CE+ H
Sbjct: 111 SVDNWC---RRDKKQCKTHVVVPFKCLVGEFVSDVLLVPEKCQFSHKEQMEVCENHQHWH 167
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGTAVGDPSTRSWPLX 788
+EAC +QG+ L+ GMLLPCG DRF G EYVCC P T T +
Sbjct: 168 TVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCC--PQTKTVESTVSKEEEEDEDEEE 225
Query: 789 XXXXXXXXXXXXXSFLQPVD--------------------------DYFVEPPRAXXXXX 890
F D DY+ + +
Sbjct: 226 EEDEEEDYDIYKSEFPTEADLEDFTEAAVDEDDEDEEEGEEVVEDRDYYYDTFKGDDYND 285
Query: 891 XXKVPPASSHTPAGVS-----KVTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERR 1055
P+S T + KV PTP PT+ VDVYF + +EH F +AK LE R
Sbjct: 286 ENPTEPSSDGTISEKEITHDVKVPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRH 345
Query: 1056 MRQINEVMREWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
+++ V +EW A+ Q++NLPKA+RQ L +HFQ++++ LE++ +
Sbjct: 346 RNRMDRVKKEWEEAELQAKNLPKAERQTLIQHFQAMVKALEKEAA 390
>ref|XP_856156.1| PREDICTED: similar to amyloid beta (A4) precursor-like protein 2
isoform 9 [Canis familiaris].
Length = 699
Score = 227 bits (578), Expect = 2e-59
Identities = 122/335 (36%), Positives = 179/335 (53%), Gaps = 21/335 (6%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CG+ +H +++TG+WEPDP +++C + VL+YC++MYPELQI V +A + +
Sbjct: 51 QIAVFCGKLNMHVNIQTGKWEPDPTGTKKCFGTKEEVLQYCQEMYPELQITNVMEANEPV 110
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R + H VVPF+CL GEFVS+ LLVPE C+F H+E+M+ CE+ H
Sbjct: 111 SVDNWC---RRDKKQCKTHVVVPFKCLVGEFVSDVLLVPEKCQFSHKEQMEVCENHQHWH 167
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGTA-------VGDPS 767
+EAC +QG+ L+ GMLLPCG DRF G EYVCCP T + + +
Sbjct: 168 TVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCCPQTKTVESTVSKEEEEDEDEEEEE 227
Query: 768 TRSWPLXXXXXXXXXXXXXXSFLQPVDDYFVEPPRAXXXXXXXKVPPASSHTPA-GVSK- 941
F + D E A H+P G S
Sbjct: 228 DEEEDYDIYKSEFPTEADLEDFTEAAVDEDDEDEEEGEEVVEDPYVGAKRHSPGFGTSSL 287
Query: 942 ------------VTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMRE 1085
+ PTP PT+ VDVYF + +EH F +AK LE R +++ V +E
Sbjct: 288 SADVMTQQVVRAIPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKE 347
Query: 1086 WAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
W A+ Q++NLPKA+RQ L +HFQ++++ LE++ +
Sbjct: 348 WEEAELQAKNLPKAERQTLIQHFQAMVKALEKEAA 382
>ref|NP_001006601.1| amyloid beta A4 protein [Canis lupus familiaris].
Length = 770
Score = 180 bits (456), Expect = 3e-45
Identities = 79/157 (50%), Positives = 110/157 (70%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
QVA LCG+ +H +++ G+WE DP ++ C+ + +L+YC+++YPELQI V +A Q +
Sbjct: 33 QVAMLCGKLRMHMNVQNGKWESDPLGTKTCIGSKEDILQYCQEVYPELQITNVVEANQPV 92
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R +C H V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+ H
Sbjct: 93 TIQNWCKKGRK-QCKTHAHIVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
A+E C+ + LH GMLLPCG D+FRGVE+VCCP
Sbjct: 152 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 188
Score = 74.3 bits (181), Expect = 2e-13
Identities = 36/90 (40%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = +3
Query: 924 PAGVSKVTPTPRPT-DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMAD 1100
P K+ T T D VD Y PG+ +EH F +AK LE + ++++VMREW A+
Sbjct: 358 PQDAVKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAE 417
Query: 1101 NQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
Q++NLPKAD++A+ +HFQ +++LE++ +
Sbjct: 418 RQAKNLPKADKKAVIQHFQEKVESLEQEAA 447
>ref|XP_536530.2| PREDICTED: similar to Amyloid-like protein 2 precursor (Amyloid
protein homolog) (APPH) (CDEI-box binding protein)
(CDEBP) isoform 1 [Canis familiaris].
Length = 763
Score = 176 bits (446), Expect = 4e-44
Identities = 78/161 (48%), Positives = 109/161 (67%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CG+ +H +++TG+WEPDP +++C + VL+YC++MYPELQI V +A + +
Sbjct: 51 QIAVFCGKLNMHVNIQTGKWEPDPTGTKKCFGTKEEVLQYCQEMYPELQITNVMEANEPV 110
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R + H VVPF+CL GEFVS+ LLVPE C+F H+E+M+ CE+ H
Sbjct: 111 SVDNWC---RRDKKQCKTHVVVPFKCLVGEFVSDVLLVPEKCQFSHKEQMEVCENHQHWH 167
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPAT 731
+EAC +QG+ L+ GMLLPCG DRF G EYVCCP T
Sbjct: 168 TVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCCPQTKT 208
Score = 79.7 bits (195), Expect = 5e-15
Identities = 36/83 (43%), Positives = 57/83 (68%)
Frame = +3
Query: 942 VTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLP 1121
+ PTP PT+ VDVYF + +EH F +AK LE R +++ V +EW A+ Q++NLP
Sbjct: 364 IPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLP 423
Query: 1122 KADRQALNEHFQSILQTLEEQVS 1190
KA+RQ L +HFQ++++ LE++ +
Sbjct: 424 KAERQTLIQHFQAMVKALEKEAA 446
>ref|XP_856859.1| PREDICTED: similar to Amyloid-like protein 2 precursor (Amyloid
protein homolog) (APPH) (CDEI-box binding protein)
(CDEBP) isoform 26 [Canis familiaris].
Length = 755
Score = 176 bits (446), Expect = 4e-44
Identities = 78/161 (48%), Positives = 109/161 (67%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CG+ +H +++TG+WEPDP +++C + VL+YC++MYPELQI V +A + +
Sbjct: 51 QIAVFCGKLNMHVNIQTGKWEPDPTGTKKCFGTKEEVLQYCQEMYPELQITNVMEANEPV 110
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R + H VVPF+CL GEFVS+ LLVPE C+F H+E+M+ CE+ H
Sbjct: 111 SVDNWC---RRDKKQCKTHVVVPFKCLVGEFVSDVLLVPEKCQFSHKEQMEVCENHQHWH 167
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPAT 731
+EAC +QG+ L+ GMLLPCG DRF G EYVCCP T
Sbjct: 168 TVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCCPQTKT 208
Score = 79.7 bits (195), Expect = 5e-15
Identities = 36/83 (43%), Positives = 57/83 (68%)
Frame = +3
Query: 942 VTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLP 1121
+ PTP PT+ VDVYF + +EH F +AK LE R +++ V +EW A+ Q++NLP
Sbjct: 368 IPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLP 427
Query: 1122 KADRQALNEHFQSILQTLEEQVS 1190
KA+RQ L +HFQ++++ LE++ +
Sbjct: 428 KAERQTLIQHFQAMVKALEKEAA 450
>ref|XP_856781.1| PREDICTED: similar to Amyloid-like protein 2 precursor (Amyloid
protein homolog) (APPH) (CDEI-box binding protein)
(CDEBP) isoform 24 [Canis familiaris].
Length = 732
Score = 176 bits (446), Expect = 4e-44
Identities = 78/161 (48%), Positives = 109/161 (67%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CG+ +H +++TG+WEPDP +++C + VL+YC++MYPELQI V +A + +
Sbjct: 51 QIAVFCGKLNMHVNIQTGKWEPDPTGTKKCFGTKEEVLQYCQEMYPELQITNVMEANEPV 110
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R + H VVPF+CL GEFVS+ LLVPE C+F H+E+M+ CE+ H
Sbjct: 111 SVDNWC---RRDKKQCKTHVVVPFKCLVGEFVSDVLLVPEKCQFSHKEQMEVCENHQHWH 167
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPAT 731
+EAC +QG+ L+ GMLLPCG DRF G EYVCCP T
Sbjct: 168 TVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCCPQTKT 208
Score = 79.7 bits (195), Expect = 5e-15
Identities = 36/83 (43%), Positives = 57/83 (68%)
Frame = +3
Query: 942 VTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLP 1121
+ PTP PT+ VDVYF + +EH F +AK LE R +++ V +EW A+ Q++NLP
Sbjct: 345 IPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLP 404
Query: 1122 KADRQALNEHFQSILQTLEEQVS 1190
KA+RQ L +HFQ++++ LE++ +
Sbjct: 405 KAERQTLIQHFQAMVKALEKEAA 427
>ref|XP_856735.1| PREDICTED: similar to Amyloid-like protein 2 precursor (Amyloid
protein homolog) (APPH) (CDEI-box binding protein)
(CDEBP) isoform 23 [Canis familiaris].
Length = 770
Score = 176 bits (446), Expect = 4e-44
Identities = 78/161 (48%), Positives = 109/161 (67%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CG+ +H +++TG+WEPDP +++C + VL+YC++MYPELQI V +A + +
Sbjct: 51 QIAVFCGKLNMHVNIQTGKWEPDPTGTKKCFGTKEEVLQYCQEMYPELQITNVMEANEPV 110
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R + H VVPF+CL GEFVS+ LLVPE C+F H+E+M+ CE+ H
Sbjct: 111 SVDNWC---RRDKKQCKTHVVVPFKCLVGEFVSDVLLVPEKCQFSHKEQMEVCENHQHWH 167
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPAT 731
+EAC +QG+ L+ GMLLPCG DRF G EYVCCP T
Sbjct: 168 TVVKEACLAQGMTLYRYGMLLPCGVDRFHGTEYVCCPQTKT 208
Score = 81.3 bits (199), Expect = 2e-15
Identities = 40/95 (42%), Positives = 61/95 (64%)
Frame = +3
Query: 906 PASSHTPAGVSKVTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMRE 1085
PA P G+ PTP PT+ VDVYF + +EH F +AK LE R +++ V +E
Sbjct: 374 PAWQRCPVGLP---PTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKE 430
Query: 1086 WAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
W A+ Q++NLPKA+RQ L +HFQ++++ LE++ +
Sbjct: 431 WEEAELQAKNLPKAERQTLIQHFQAMVKALEKEAA 465
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,486,272
Number of extensions: 1760575
Number of successful extensions: 12686
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 12320
Number of HSP's successfully gapped: 52
Length of query: 397
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 292
Effective length of database: 15,374,224
Effective search space: 4489273408
Effective search space used: 4489273408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003503
(1192 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005157.1| amyloid-like protein 1 isoform 2 precursor [Hom... 563 e-160
Alignment gi|NP_001019978.1| amyloid-like protein 1 isoform 1 precursor [... 563 e-160
Alignment gi|NP_958817.1| amyloid beta A4 protein isoform c precursor [Ho... 227 1e-59
Alignment gi|NP_001191232.1| amyloid beta A4 protein isoform j precursor ... 227 1e-59
Alignment gi|NP_001129603.1| amyloid beta A4 protein isoform g [Homo sapi... 224 2e-58
Alignment gi|NP_001129601.1| amyloid beta A4 protein isoform e precursor ... 188 1e-47
Alignment gi|NP_001129488.1| amyloid beta A4 protein isoform d [Homo sapi... 181 2e-45
Alignment gi|NP_958816.1| amyloid beta A4 protein isoform b precursor [Ho... 181 2e-45
Alignment gi|NP_000475.1| amyloid beta A4 protein isoform a precursor [Ho... 181 2e-45
Alignment gi|NP_001191231.1| amyloid beta A4 protein isoform i precursor ... 181 2e-45
>ref|NP_005157.1| amyloid-like protein 1 isoform 2 precursor [Homo sapiens].
Length = 650
Score = 563 bits (1451), Expect = e-160
Identities = 272/314 (86%), Positives = 280/314 (89%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
QVAGLCGR TLHRDLRTGRWEPDPQ SRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI
Sbjct: 55 QVAGLCGRLTLHRDLRTGRWEPDPQRSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 114
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
PME+WCG +R G CAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH
Sbjct: 115 PMERWCGGSRSGSCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 174
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGTAVGDPSTRSWPLX 788
QEAQEAC+SQGLILHGSGMLLPCG+DRFRGVEYVCCPPP TP+PSGTAVGDPSTRSWP
Sbjct: 175 QEAQEACSSQGLILHGSGMLLPCGSDRFRGVEYVCCPPPGTPDPSGTAVGDPSTRSWPPG 234
Query: 789 XXXXXXXXXXXXXSFLQPVDDYFVEPPRAXXXXXXXKVPPASSHTPAGVSKVTPTPRPTD 968
SF QPVDDYFVEPP+A VPP SSHT A V KVTPTPRPTD
Sbjct: 235 SRVEGAEDEEEEESFPQPVDDYFVEPPQA--EEEEETVPPPSSHTLAVVGKVTPTPRPTD 292
Query: 969 GVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLPKADRQALNE 1148
GVD+YFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQS+NLPKADRQALNE
Sbjct: 293 GVDIYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSKNLPKADRQALNE 352
Query: 1149 HFQSILQTLEEQVS 1190
HFQSILQTLEEQVS
Sbjct: 353 HFQSILQTLEEQVS 366
>ref|NP_001019978.1| amyloid-like protein 1 isoform 1 precursor [Homo sapiens].
Length = 651
Score = 563 bits (1451), Expect = e-160
Identities = 272/314 (86%), Positives = 280/314 (89%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
QVAGLCGR TLHRDLRTGRWEPDPQ SRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI
Sbjct: 55 QVAGLCGRLTLHRDLRTGRWEPDPQRSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 114
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
PME+WCG +R G CAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH
Sbjct: 115 PMERWCGGSRSGSCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 174
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGTAVGDPSTRSWPLX 788
QEAQEAC+SQGLILHGSGMLLPCG+DRFRGVEYVCCPPP TP+PSGTAVGDPSTRSWP
Sbjct: 175 QEAQEACSSQGLILHGSGMLLPCGSDRFRGVEYVCCPPPGTPDPSGTAVGDPSTRSWPPG 234
Query: 789 XXXXXXXXXXXXXSFLQPVDDYFVEPPRAXXXXXXXKVPPASSHTPAGVSKVTPTPRPTD 968
SF QPVDDYFVEPP+A VPP SSHT A V KVTPTPRPTD
Sbjct: 235 SRVEGAEDEEEEESFPQPVDDYFVEPPQA--EEEEETVPPPSSHTLAVVGKVTPTPRPTD 292
Query: 969 GVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLPKADRQALNE 1148
GVD+YFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQS+NLPKADRQALNE
Sbjct: 293 GVDIYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSKNLPKADRQALNE 352
Query: 1149 HFQSILQTLEEQVS 1190
HFQSILQTLEEQVS
Sbjct: 353 HFQSILQTLEEQVS 366
>ref|NP_958817.1| amyloid beta A4 protein isoform c precursor [Homo sapiens].
Length = 695
Score = 227 bits (579), Expect = 1e-59
Identities = 121/341 (35%), Positives = 181/341 (53%), Gaps = 27/341 (7%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CGR +H +++ G+W+ DP ++ C+ + +L+YC+++YPELQI V +A Q +
Sbjct: 33 QIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPV 92
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R HPH V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+ H
Sbjct: 93 TIQNWCKRGRKQCKTHPHF-VIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPN--PSGTAVGDPSTRSWP 782
A+E C+ + LH GMLLPCG D+FRGVE+VCCP + S A D S W
Sbjct: 152 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVDSADAEEDDSDVWWG 211
Query: 783 LXXXXXXXXXXXXXXSFLQPVD---------------------DYFVEPPRAXXXXXXXK 899
+ + + E P
Sbjct: 212 GADTDYADGSEDKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEEAEEPYEEATERTTS 271
Query: 900 VPPASSHTPAGVSKVTPTPRPT----DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQI 1067
+ ++ T V +V P D VD Y PG+ +EH F +AK LE + ++
Sbjct: 272 IATTTTTTTESVEEVVRVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERM 331
Query: 1068 NEVMREWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
++VMREW A+ Q++NLPKAD++A+ +HFQ +++LE++ +
Sbjct: 332 SQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAA 372
>ref|NP_001191232.1| amyloid beta A4 protein isoform j precursor [Homo sapiens].
Length = 677
Score = 227 bits (579), Expect = 1e-59
Identities = 121/341 (35%), Positives = 181/341 (53%), Gaps = 27/341 (7%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CGR +H +++ G+W+ DP ++ C+ + +L+YC+++YPELQI V +A Q +
Sbjct: 33 QIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPV 92
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R HPH V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+ H
Sbjct: 93 TIQNWCKRGRKQCKTHPHF-VIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPN--PSGTAVGDPSTRSWP 782
A+E C+ + LH GMLLPCG D+FRGVE+VCCP + S A D S W
Sbjct: 152 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVDSADAEEDDSDVWWG 211
Query: 783 LXXXXXXXXXXXXXXSFLQPVD---------------------DYFVEPPRAXXXXXXXK 899
+ + + E P
Sbjct: 212 GADTDYADGSEDKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEEAEEPYEEATERTTS 271
Query: 900 VPPASSHTPAGVSKVTPTPRPT----DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQI 1067
+ ++ T V +V P D VD Y PG+ +EH F +AK LE + ++
Sbjct: 272 IATTTTTTTESVEEVVRVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERM 331
Query: 1068 NEVMREWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
++VMREW A+ Q++NLPKAD++A+ +HFQ +++LE++ +
Sbjct: 332 SQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAA 372
>ref|NP_001129603.1| amyloid beta A4 protein isoform g [Homo sapiens].
Length = 660
Score = 224 bits (570), Expect = 2e-58
Identities = 119/336 (35%), Positives = 178/336 (52%), Gaps = 27/336 (8%)
Frame = +3
Query: 264 CGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAIPMEQW 443
CGR +H +++ G+W+ DP ++ C+ + +L+YC+++YPELQI V +A Q + ++ W
Sbjct: 3 CGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPVTIQNW 62
Query: 444 CGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRHQEAQE 623
C R HPH V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+ H A+E
Sbjct: 63 CKRGRKQCKTHPHF-VIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWHTVAKE 121
Query: 624 ACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPN--PSGTAVGDPSTRSWPLXXXX 797
C+ + LH GMLLPCG D+FRGVE+VCCP + S A D S W
Sbjct: 122 TCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVDSADAEEDDSDVWWGGADTD 181
Query: 798 XXXXXXXXXXSFLQPVD---------------------DYFVEPPRAXXXXXXXKVPPAS 914
+ + + E P + +
Sbjct: 182 YADGSEDKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEEAEEPYEEATERTTSIATTT 241
Query: 915 SHTPAGVSKVTPTPRPT----DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMR 1082
+ T V +V P D VD Y PG+ +EH F +AK LE + ++++VMR
Sbjct: 242 TTTTESVEEVVRVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMR 301
Query: 1083 EWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
EW A+ Q++NLPKAD++A+ +HFQ +++LE++ +
Sbjct: 302 EWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAA 337
>ref|NP_001129601.1| amyloid beta A4 protein isoform e precursor [Homo sapiens].
Length = 639
Score = 188 bits (477), Expect = 1e-47
Identities = 107/299 (35%), Positives = 153/299 (51%), Gaps = 27/299 (9%)
Frame = +3
Query: 375 QMYPELQIARVEQATQAIPMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGC 554
++YPELQI V +A Q + ++ WC R HPH V+P+RCL GEFVS+ALLVP+ C
Sbjct: 19 EVYPELQITNVVEANQPVTIQNWCKRGRKQCKTHPHF-VIPYRCLVGEFVSDALLVPDKC 77
Query: 555 RFLHQERMDQCESSTRRHQEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATP 734
+FLHQERMD CE+ H A+E C+ + LH GMLLPCG D+FRGVE+VCCP
Sbjct: 78 KFLHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEES 137
Query: 735 N--PSGTAVGDPSTRSWPLXXXXXXXXXXXXXXSFLQPVD-------------------- 848
+ S A D S W + +
Sbjct: 138 DNVDSADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVAEVEEEEADDDEDDEDGDE 197
Query: 849 -DYFVEPPRAXXXXXXXKVPPASSHTPAGVSKVTPTPRPT----DGVDVYFGMPGEISEH 1013
+ E P + ++ T V +V P D VD Y PG+ +EH
Sbjct: 198 VEEEAEEPYEEATERTTSIATTTTTTTESVEEVVRVPTTAASTPDAVDKYLETPGDENEH 257
Query: 1014 EGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
F +AK LE + ++++VMREW A+ Q++NLPKAD++A+ +HFQ +++LE++ +
Sbjct: 258 AHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAA 316
>ref|NP_001129488.1| amyloid beta A4 protein isoform d [Homo sapiens].
Length = 746
Score = 181 bits (458), Expect = 2e-45
Identities = 78/157 (49%), Positives = 109/157 (69%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CGR +H +++ G+W+ DP ++ C+ + +L+YC+++YPELQI V +A Q +
Sbjct: 28 QIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPV 87
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R HPH V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+ H
Sbjct: 88 TIQNWCKRGRKQCKTHPHF-VIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 146
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
A+E C+ + LH GMLLPCG D+FRGVE+VCCP
Sbjct: 147 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 183
Score = 73.6 bits (179), Expect = 3e-13
Identities = 32/75 (42%), Positives = 53/75 (70%)
Frame = +3
Query: 966 DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLPKADRQALN 1145
D VD Y PG+ +EH F +AK LE + ++++VMREW A+ Q++NLPKAD++A+
Sbjct: 349 DAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVI 408
Query: 1146 EHFQSILQTLEEQVS 1190
+HFQ +++LE++ +
Sbjct: 409 QHFQEKVESLEQEAA 423
>ref|NP_958816.1| amyloid beta A4 protein isoform b precursor [Homo sapiens].
Length = 751
Score = 181 bits (458), Expect = 2e-45
Identities = 78/157 (49%), Positives = 109/157 (69%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CGR +H +++ G+W+ DP ++ C+ + +L+YC+++YPELQI V +A Q +
Sbjct: 33 QIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPV 92
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R HPH V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+ H
Sbjct: 93 TIQNWCKRGRKQCKTHPHF-VIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
A+E C+ + LH GMLLPCG D+FRGVE+VCCP
Sbjct: 152 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 188
Score = 73.6 bits (179), Expect = 3e-13
Identities = 32/75 (42%), Positives = 53/75 (70%)
Frame = +3
Query: 966 DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLPKADRQALN 1145
D VD Y PG+ +EH F +AK LE + ++++VMREW A+ Q++NLPKAD++A+
Sbjct: 354 DAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVI 413
Query: 1146 EHFQSILQTLEEQVS 1190
+HFQ +++LE++ +
Sbjct: 414 QHFQEKVESLEQEAA 428
>ref|NP_000475.1| amyloid beta A4 protein isoform a precursor [Homo sapiens].
Length = 770
Score = 181 bits (458), Expect = 2e-45
Identities = 78/157 (49%), Positives = 109/157 (69%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CGR +H +++ G+W+ DP ++ C+ + +L+YC+++YPELQI V +A Q +
Sbjct: 33 QIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPV 92
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R HPH V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+ H
Sbjct: 93 TIQNWCKRGRKQCKTHPHF-VIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
A+E C+ + LH GMLLPCG D+FRGVE+VCCP
Sbjct: 152 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 188
Score = 73.9 bits (180), Expect = 3e-13
Identities = 36/98 (36%), Positives = 60/98 (61%)
Frame = +3
Query: 897 KVPPASSHTPAGVSKVTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEV 1076
K+P ++ TP D VD Y PG+ +EH F +AK LE + ++++V
Sbjct: 363 KLPTTAASTP-------------DAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQV 409
Query: 1077 MREWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
MREW A+ Q++NLPKAD++A+ +HFQ +++LE++ +
Sbjct: 410 MREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAA 447
>ref|NP_001191231.1| amyloid beta A4 protein isoform i precursor [Homo sapiens].
Length = 733
Score = 181 bits (458), Expect = 2e-45
Identities = 78/157 (49%), Positives = 109/157 (69%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CGR +H +++ G+W+ DP ++ C+ + +L+YC+++YPELQI V +A Q +
Sbjct: 33 QIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPV 92
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R HPH V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+ H
Sbjct: 93 TIQNWCKRGRKQCKTHPHF-VIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
A+E C+ + LH GMLLPCG D+FRGVE+VCCP
Sbjct: 152 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 188
Score = 73.6 bits (179), Expect = 3e-13
Identities = 32/75 (42%), Positives = 53/75 (70%)
Frame = +3
Query: 966 DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLPKADRQALN 1145
D VD Y PG+ +EH F +AK LE + ++++VMREW A+ Q++NLPKAD++A+
Sbjct: 354 DAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVI 413
Query: 1146 EHFQSILQTLEEQVS 1190
+HFQ +++LE++ +
Sbjct: 414 QHFQEKVESLEQEAA 428
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,258,654
Number of extensions: 1705331
Number of successful extensions: 11087
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 10889
Number of HSP's successfully gapped: 32
Length of query: 397
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 292
Effective length of database: 14,835,944
Effective search space: 4332095648
Effective search space used: 4332095648
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003503
(1192 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031493.2| amyloid-like protein 1 [Mus musculus]. 556 e-158
Alignment gi|NP_033821.1| amyloid-like protein 2 isoform c [Mus musculus]. 234 8e-62
Alignment gi|NP_001095926.1| amyloid-like protein 2 isoform b [Mus muscul... 234 8e-62
Alignment gi|NP_031497.2| amyloid beta A4 protein isoform 2 precursor [Mu... 225 6e-59
Alignment gi|NP_001095925.1| amyloid-like protein 2 isoform a [Mus muscul... 180 2e-45
Alignment gi|NP_001185755.1| amyloid beta A4 protein isoform 6 precursor ... 178 6e-45
Alignment gi|NP_001185754.1| amyloid beta A4 protein isoform 5 precursor ... 178 6e-45
Alignment gi|NP_001185753.1| amyloid beta A4 protein isoform 3 precursor ... 178 6e-45
Alignment gi|NP_001185752.1| amyloid beta A4 protein isoform 1 precursor ... 178 6e-45
>ref|NP_031493.2| amyloid-like protein 1 [Mus musculus].
Length = 654
Score = 556 bits (1433), Expect = e-158
Identities = 267/316 (84%), Positives = 276/316 (87%), Gaps = 2/316 (0%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
QVAGLCGR TLHRDLRTGRWEPDPQ SRRCL DPQRVLEYCRQMYPEL IARVEQA QAI
Sbjct: 55 QVAGLCGRLTLHRDLRTGRWEPDPQRSRRCLLDPQRVLEYCRQMYPELHIARVEQAAQAI 114
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
PME+WCG R GRCAHPHH+VVPF CLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH
Sbjct: 115 PMERWCGGTRSGRCAHPHHEVVPFHCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 174
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGTAVGDPSTRSWPLX 788
QEAQEAC+SQGLILHGSGMLLPCG+DRFRGVEYVCCPPPATPNPSG A GDPSTRSWPL
Sbjct: 175 QEAQEACSSQGLILHGSGMLLPCGSDRFRGVEYVCCPPPATPNPSGMAAGDPSTRSWPLG 234
Query: 789 XXXXXXXXXXXXXSFLQPVDDYFVEPPRA--XXXXXXXKVPPASSHTPAGVSKVTPTPRP 962
SF QPVDDYFVEPP+A + PP SSHTP VS+VTPTPRP
Sbjct: 235 GRAEGGEDEEEVESFPQPVDDYFVEPPQAEEEEEEEEERAPPPSSHTPVMVSRVTPTPRP 294
Query: 963 TDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLPKADRQAL 1142
TDGVDVYFGMPGEI EHEGFLRAKMDLEERRMRQINEVMREWAMAD+QS+NLPKADRQAL
Sbjct: 295 TDGVDVYFGMPGEIGEHEGFLRAKMDLEERRMRQINEVMREWAMADSQSKNLPKADRQAL 354
Query: 1143 NEHFQSILQTLEEQVS 1190
NEHFQSILQTLEEQVS
Sbjct: 355 NEHFQSILQTLEEQVS 370
>ref|NP_033821.1| amyloid-like protein 2 isoform c [Mus musculus].
Length = 695
Score = 234 bits (598), Expect = 8e-62
Identities = 125/343 (36%), Positives = 182/343 (53%), Gaps = 29/343 (8%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CG+ +H +++TG+WEPDP ++ CL + VL+YC+++YPELQI V +A Q +
Sbjct: 51 QIAMFCGKLNMHVNIQTGKWEPDPTGTKSCLGTKEEVLQYCQEIYPELQITNVMEANQPV 110
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R + H V+PF+CL GEFVS+ LLVP+ C+F HQERM+ CE R H
Sbjct: 111 NIDSWC---RRDKRQCKSHIVIPFKCLVGEFVSDVLLVPDNCQFFHQERMEVCEKHQRWH 167
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGT-------AVGDPS 767
+EAC ++GL L+ GMLLPCG D+F G EYVCCP T + T D
Sbjct: 168 TLVKEACLTEGLTLYSYGMLLPCGVDQFHGTEYVCCPQTKTVDSDSTMSKEEEEEEEDEE 227
Query: 768 TRSWPLXXXXXXXXXXXXXXSFLQPV-----------------DDYFVEPPRAXXXXXXX 896
F + DY+ +P +
Sbjct: 228 DEEEDYDLDKSEFPTEADLEDFTEAAADEEEEDEEEGEEVVEDRDYYYDPFKGDDYNEEN 287
Query: 897 KVPPASSHTPAGVS-----KVTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMR 1061
P+S T + KV PTP PT+ VDVYF + +EH F +AK LE R
Sbjct: 288 PTEPSSEGTISDKEIVHDVKVPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRN 347
Query: 1062 QINEVMREWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
+++ V +EW A+ Q++NLPK +RQ L +HFQ++++ LE++ +
Sbjct: 348 RMDRVKKEWEEAELQAKNLPKTERQTLIQHFQAMVKALEKEAA 390
>ref|NP_001095926.1| amyloid-like protein 2 isoform b [Mus musculus].
Length = 707
Score = 234 bits (598), Expect = 8e-62
Identities = 125/343 (36%), Positives = 182/343 (53%), Gaps = 29/343 (8%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CG+ +H +++TG+WEPDP ++ CL + VL+YC+++YPELQI V +A Q +
Sbjct: 51 QIAMFCGKLNMHVNIQTGKWEPDPTGTKSCLGTKEEVLQYCQEIYPELQITNVMEANQPV 110
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R + H V+PF+CL GEFVS+ LLVP+ C+F HQERM+ CE R H
Sbjct: 111 NIDSWC---RRDKRQCKSHIVIPFKCLVGEFVSDVLLVPDNCQFFHQERMEVCEKHQRWH 167
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGT-------AVGDPS 767
+EAC ++GL L+ GMLLPCG D+F G EYVCCP T + T D
Sbjct: 168 TLVKEACLTEGLTLYSYGMLLPCGVDQFHGTEYVCCPQTKTVDSDSTMSKEEEEEEEDEE 227
Query: 768 TRSWPLXXXXXXXXXXXXXXSFLQPV-----------------DDYFVEPPRAXXXXXXX 896
F + DY+ +P +
Sbjct: 228 DEEEDYDLDKSEFPTEADLEDFTEAAADEEEEDEEEGEEVVEDRDYYYDPFKGDDYNEEN 287
Query: 897 KVPPASSHTPAGVS-----KVTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMR 1061
P+S T + KV PTP PT+ VDVYF + +EH F +AK LE R
Sbjct: 288 PTEPSSEGTISDKEIVHDVKVPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRN 347
Query: 1062 QINEVMREWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
+++ V +EW A+ Q++NLPK +RQ L +HFQ++++ LE++ +
Sbjct: 348 RMDRVKKEWEEAELQAKNLPKTERQTLIQHFQAMVKALEKEAA 390
>ref|NP_031497.2| amyloid beta A4 protein isoform 2 precursor [Mus musculus].
Length = 695
Score = 225 bits (573), Expect = 6e-59
Identities = 124/341 (36%), Positives = 182/341 (53%), Gaps = 27/341 (7%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CG+ +H +++ G+WE DP ++ C+ + +L+YC+++YPELQI V +A Q +
Sbjct: 33 QIAMFCGKLNMHMNVQNGKWESDPSGTKTCIGTKEGILQYCQEVYPELQITNVVEANQPV 92
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R +C H V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+ H
Sbjct: 93 TIQNWCKRGRK-QCKTHTHIVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP--PPATPNPSGTAVGDPSTRSWP 782
A+E C+ + LH GMLLPCG D+FRGVE+VCCP + S A D S W
Sbjct: 152 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDSVDSADAEEDDSDVWWG 211
Query: 783 LXXXXXXXXXXXXXXSFLQPV-----------DDYFVEPPRAXXXXXXXKVPPASSHTPA 929
+ DD VE A+ T +
Sbjct: 212 GADTDYADGGEDKVVEVAEEEEVADVEEEEADDDEDVEDGDEVEEEAEEPYEEATERTTS 271
Query: 930 GVSKVTPTPR--------PT------DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQI 1067
+ T T PT D VD Y PG+ +EH F +AK LE + ++
Sbjct: 272 TATTTTTTTESVEEVVRVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERM 331
Query: 1068 NEVMREWAMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
++VMREW A+ Q++NLPKAD++A+ +HFQ +++LE++ +
Sbjct: 332 SQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAA 372
>ref|NP_001095925.1| amyloid-like protein 2 isoform a [Mus musculus].
Length = 751
Score = 180 bits (456), Expect = 2e-45
Identities = 80/167 (47%), Positives = 111/167 (66%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CG+ +H +++TG+WEPDP ++ CL + VL+YC+++YPELQI V +A Q +
Sbjct: 51 QIAMFCGKLNMHVNIQTGKWEPDPTGTKSCLGTKEEVLQYCQEIYPELQITNVMEANQPV 110
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R + H V+PF+CL GEFVS+ LLVP+ C+F HQERM+ CE R H
Sbjct: 111 NIDSWC---RRDKRQCKSHIVIPFKCLVGEFVSDVLLVPDNCQFFHQERMEVCEKHQRWH 167
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATPNPSGT 749
+EAC ++GL L+ GMLLPCG D+F G EYVCCP T + T
Sbjct: 168 TLVKEACLTEGLTLYSYGMLLPCGVDQFHGTEYVCCPQTKTVDSDST 214
Score = 78.2 bits (191), Expect = 1e-14
Identities = 35/83 (42%), Positives = 56/83 (67%)
Frame = +3
Query: 942 VTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLP 1121
+ PTP PT+ VDVYF + +EH F +AK LE R +++ V +EW A+ Q++NLP
Sbjct: 364 IPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLP 423
Query: 1122 KADRQALNEHFQSILQTLEEQVS 1190
K +RQ L +HFQ++++ LE++ +
Sbjct: 424 KTERQTLIQHFQAMVKALEKEAA 446
>ref|NP_001185755.1| amyloid beta A4 protein isoform 6 precursor [Mus musculus].
Length = 752
Score = 178 bits (452), Expect = 6e-45
Identities = 77/157 (49%), Positives = 109/157 (69%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CG+ +H +++ G+WE DP ++ C+ + +L+YC+++YPELQI V +A Q +
Sbjct: 33 QIAMFCGKLNMHMNVQNGKWESDPSGTKTCIGTKEGILQYCQEVYPELQITNVVEANQPV 92
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R +C H V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+ H
Sbjct: 93 TIQNWCKRGRK-QCKTHTHIVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
A+E C+ + LH GMLLPCG D+FRGVE+VCCP
Sbjct: 152 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 188
Score = 74.7 bits (182), Expect = 1e-13
Identities = 37/94 (39%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Frame = +3
Query: 912 SSHTPAGVSKVTPTPRPT-DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREW 1088
S P K+ T T D VD Y PG+ +EH F +AK LE + ++++VMREW
Sbjct: 354 SEPLPQDPDKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREW 413
Query: 1089 AMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
A+ Q++NLPKAD++A+ +HFQ +++LE++ +
Sbjct: 414 EEAERQAKNLPKADKKAVIQHFQEKVESLEQEAA 447
>ref|NP_001185754.1| amyloid beta A4 protein isoform 5 precursor [Mus musculus].
Length = 733
Score = 178 bits (452), Expect = 6e-45
Identities = 77/157 (49%), Positives = 109/157 (69%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CG+ +H +++ G+WE DP ++ C+ + +L+YC+++YPELQI V +A Q +
Sbjct: 33 QIAMFCGKLNMHMNVQNGKWESDPSGTKTCIGTKEGILQYCQEVYPELQITNVVEANQPV 92
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R +C H V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+ H
Sbjct: 93 TIQNWCKRGRK-QCKTHTHIVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
A+E C+ + LH GMLLPCG D+FRGVE+VCCP
Sbjct: 152 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 188
Score = 73.6 bits (179), Expect = 3e-13
Identities = 32/75 (42%), Positives = 53/75 (70%)
Frame = +3
Query: 966 DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLPKADRQALN 1145
D VD Y PG+ +EH F +AK LE + ++++VMREW A+ Q++NLPKAD++A+
Sbjct: 354 DAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVI 413
Query: 1146 EHFQSILQTLEEQVS 1190
+HFQ +++LE++ +
Sbjct: 414 QHFQEKVESLEQEAA 428
>ref|NP_001185753.1| amyloid beta A4 protein isoform 3 precursor [Mus musculus].
Length = 751
Score = 178 bits (452), Expect = 6e-45
Identities = 77/157 (49%), Positives = 109/157 (69%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CG+ +H +++ G+WE DP ++ C+ + +L+YC+++YPELQI V +A Q +
Sbjct: 33 QIAMFCGKLNMHMNVQNGKWESDPSGTKTCIGTKEGILQYCQEVYPELQITNVVEANQPV 92
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R +C H V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+ H
Sbjct: 93 TIQNWCKRGRK-QCKTHTHIVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
A+E C+ + LH GMLLPCG D+FRGVE+VCCP
Sbjct: 152 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 188
Score = 73.6 bits (179), Expect = 3e-13
Identities = 32/75 (42%), Positives = 53/75 (70%)
Frame = +3
Query: 966 DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLPKADRQALN 1145
D VD Y PG+ +EH F +AK LE + ++++VMREW A+ Q++NLPKAD++A+
Sbjct: 354 DAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVI 413
Query: 1146 EHFQSILQTLEEQVS 1190
+HFQ +++LE++ +
Sbjct: 414 QHFQEKVESLEQEAA 428
>ref|NP_001185752.1| amyloid beta A4 protein isoform 1 precursor [Mus musculus].
Length = 770
Score = 178 bits (452), Expect = 6e-45
Identities = 77/157 (49%), Positives = 109/157 (69%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CG+ +H +++ G+WE DP ++ C+ + +L+YC+++YPELQI V +A Q +
Sbjct: 33 QIAMFCGKLNMHMNVQNGKWESDPSGTKTCIGTKEGILQYCQEVYPELQITNVVEANQPV 92
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R +C H V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+ H
Sbjct: 93 TIQNWCKRGRK-QCKTHTHIVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
A+E C+ + LH GMLLPCG D+FRGVE+VCCP
Sbjct: 152 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 188
Score = 74.7 bits (182), Expect = 1e-13
Identities = 37/94 (39%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Frame = +3
Query: 912 SSHTPAGVSKVTPTPRPT-DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREW 1088
S P K+ T T D VD Y PG+ +EH F +AK LE + ++++VMREW
Sbjct: 354 SEPLPQDPDKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREW 413
Query: 1089 AMADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
A+ Q++NLPKAD++A+ +HFQ +++LE++ +
Sbjct: 414 EEAERQAKNLPKADKKAVIQHFQEKVESLEQEAA 447
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,589,696
Number of extensions: 1391690
Number of successful extensions: 8330
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 8192
Number of HSP's successfully gapped: 17
Length of query: 397
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 294
Effective length of database: 12,523,851
Effective search space: 3682012194
Effective search space used: 3682012194
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003503
(1192 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127129.1| PREDICTED: amyloid-like protein 1-like [Sus ... 282 2e-76
Alignment gi|NP_999537.1| amyloid beta A4 protein [Sus scrofa]. 179 3e-45
Alignment gi|XP_003357409.1| PREDICTED: amyloid-like protein 2, partial [... 173 1e-43
Alignment gi|XP_003358940.1| PREDICTED: amyloid beta A4 protein-like [Sus... 66 3e-11
>ref|XP_003127129.1| PREDICTED: amyloid-like protein 1-like [Sus scrofa].
Length = 181
Score = 282 bits (722), Expect = 2e-76
Identities = 129/130 (99%), Positives = 130/130 (100%)
Frame = +3
Query: 375 QMYPELQIARVEQATQAIPMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGC 554
+MYPELQIARVEQATQAIPMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGC
Sbjct: 43 EMYPELQIARVEQATQAIPMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGC 102
Query: 555 RFLHQERMDQCESSTRRHQEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATP 734
RFLHQERMDQCESSTRRHQEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATP
Sbjct: 103 RFLHQERMDQCESSTRRHQEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCPPPATP 162
Query: 735 NPSGTAVGDP 764
NPSGTAVGDP
Sbjct: 163 NPSGTAVGDP 172
>ref|NP_999537.1| amyloid beta A4 protein [Sus scrofa].
Length = 770
Score = 179 bits (454), Expect = 3e-45
Identities = 78/157 (49%), Positives = 110/157 (70%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
QVA CG+ +H +++ G+WE DP ++ C+ + +L+YC+++YPELQI V +A Q +
Sbjct: 33 QVAMFCGKLNMHMNVQNGKWESDPSGTKTCIGTKEGILQYCQEVYPELQITNVVEANQPV 92
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC +R +C H V+P+RCL GEFVS+ALLVP+ C+FLHQERMD CE+ H
Sbjct: 93 TIQNWCKRSRK-QCKTHTHIVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWH 151
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
A+E C+ + LH GMLLPCG D+FRGVE+VCCP
Sbjct: 152 TVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCP 188
Score = 76.3 bits (186), Expect = 3e-14
Identities = 37/92 (40%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Frame = +3
Query: 918 HTPAGVSKVTPTPRPT-DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAM 1094
H P K+ T T D VD Y PG+ +EH F +AK LE + ++++VMREW
Sbjct: 356 HLPQDPVKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEE 415
Query: 1095 ADNQSQNLPKADRQALNEHFQSILQTLEEQVS 1190
A+ Q++NLPKAD++A+ +HFQ +++LE++ +
Sbjct: 416 AERQAKNLPKADKKAVIQHFQEKVESLEQEAA 447
>ref|XP_003357409.1| PREDICTED: amyloid-like protein 2, partial [Sus scrofa].
Length = 744
Score = 173 bits (439), Expect = 1e-43
Identities = 76/157 (48%), Positives = 106/157 (67%)
Frame = +3
Query: 249 QVAGLCGRPTLHRDLRTGRWEPDPQLSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAI 428
Q+A CG+ +H +++TG+WEPDP ++ C + VL+YC++MYPELQI V +A Q +
Sbjct: 51 QIAMFCGKLNMHVNIQTGKWEPDPTGTKSCFGTKEEVLQYCQEMYPELQITNVMEANQPV 110
Query: 429 PMEQWCGDARGGRCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRH 608
++ WC R + H V+P +CL GEFVS+ LLVPE C+F H+ERM+ CE+ H
Sbjct: 111 RVDNWC---RRDKKQCKSHVVIPSKCLVGEFVSDVLLVPEKCQFFHKERMEVCENHQHWH 167
Query: 609 QEAQEACNSQGLILHGSGMLLPCGADRFRGVEYVCCP 719
+EAC +QG+ L+ GMLLPCG D+F G EYVCCP
Sbjct: 168 TVVKEACLTQGMTLYSYGMLLPCGVDQFHGTEYVCCP 204
Score = 79.7 bits (195), Expect = 3e-15
Identities = 36/83 (43%), Positives = 57/83 (68%)
Frame = +3
Query: 942 VTPTPRPTDGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSQNLP 1121
+ PTP PT+ VDVYF + +EH F +AK LE R +++ V +EW A+ Q++NLP
Sbjct: 371 IPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLP 430
Query: 1122 KADRQALNEHFQSILQTLEEQVS 1190
KA+RQ L +HFQ++++ LE++ +
Sbjct: 431 KAERQTLIQHFQAMVKALEKEAA 453
>ref|XP_003358940.1| PREDICTED: amyloid beta A4 protein-like [Sus scrofa].
Length = 422
Score = 66.2 bits (160), Expect = 3e-11
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +3
Query: 918 HTPAGVSKVTPTPRPT-DGVDVYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAM 1094
H P K+ T T D VD Y PG+ +EH F +AK LE + ++++VMREW
Sbjct: 71 HLPQDPVKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEE 130
Query: 1095 ADNQSQNLPKADRQALNEHFQSILQ 1169
A+ Q++NLPKAD++A+ + +S+ Q
Sbjct: 131 AERQAKNLPKADKKAVIQKVESLEQ 155
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,004,727
Number of extensions: 1117514
Number of successful extensions: 7472
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7366
Number of HSP's successfully gapped: 6
Length of query: 397
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 296
Effective length of database: 8,829,335
Effective search space: 2613483160
Effective search space used: 2613483160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003503
(1192 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 464 e-128
>Sscrofa_Chr06
|| Length = 157765593
Score = 464 bits (234), Expect = e-128
Identities = 234/234 (100%)
Strand = Plus / Plus
Query: 1 gggaggaggaggcggcggccgtggcgctgggagctcctgtcaccgctggggcctggctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40668849 gggaggaggaggcggcggccgtggcgctgggagctcctgtcaccgctggggcctggctgg 40668908
Query: 61 gccgggcgggagtgcaggggacgtgagggcgcgagggccgggacatggggcccgccagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40668909 gccgggcgggagtgcaggggacgtgagggcgcgagggccgggacatggggcccgccagcc 40668968
Query: 121 ccgccgctcgcggtctgggcccgctgcccttgttgctgccactattgctgctgcttttgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40668969 ccgccgctcgcggtctgggcccgctgcccttgttgctgccactattgctgctgcttttgc 40669028
Query: 181 gcgcgcagctcgccgtcgggagcctggccggtggaagccccagcgcagcagagg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40669029 gcgcgcagctcgccgtcgggagcctggccggtggaagccccagcgcagcagagg 40669082
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 375 cagatgtacccggagctgcagattgcacgcgtggagcaggcaacgcaggccatccccatg 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40671166 cagatgtacccggagctgcagattgcacgcgtggagcaggcaacgcaggccatccccatg 40671225
Query: 435 gagcaatggtgcggggatgcccggggtggccgctgtgcccacccccaccaccaggttgtg 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40671226 gagcaatggtgcggggatgcccggggtggccgctgtgcccacccccaccaccaggttgtg 40671285
Query: 495 cctttccgctgcctgc 510
||||||||||||||||
Sbjct: 40671286 cctttccgctgcctgc 40671301
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 622 aggcctgcaactctcagggcctcatcctgcatggctcgggcatgcttttgccctgtggcg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40671866 aggcctgcaactctcagggcctcatcctgcatggctcgggcatgcttttgccctgtggcg 40671925
Query: 682 cggatcggttccgaggtgtggagtatgtgtgctgcccgcctccagcgacccccaacccat 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40671926 cggatcggttccgaggtgtggagtatgtgtgctgcccgcctccagcgacccccaacccat 40671985
Query: 742 ctgggacagcagttgg 757
||||||||||||||||
Sbjct: 40671986 ctgggacagcagttgg 40672001
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 511 cgggtgaatttgtaagcgaggccctgctagtccctgaaggctgccggttcttgcaccagg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40671519 cgggtgaatttgtaagcgaggccctgctagtccctgaaggctgccggttcttgcaccagg 40671578
Query: 571 agcgcatggaccagtgtgagagttcaacccggaggcatcaggaggcacaggagg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40671579 agcgcatggaccagtgtgagagttcaacccggaggcatcaggaggcacaggagg 40671632
Score = 60.0 bits (30), Expect = 3e-06
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 344 ggacccgcagcgcgtgctggagtactgcagacag 377
||||||||||| ||||||||||||||||||||||
Sbjct: 40669837 ggacccgcagcccgtgctggagtactgcagacag 40669870
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,787,575
Number of extensions: 543
Number of successful extensions: 543
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 543
Number of HSP's successfully gapped: 5
Length of query: 1192
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1171
Effective length of database: 2,808,413,156
Effective search space: 3288651805676
Effective search space used: 3288651805676
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)