Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003506
(1573 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095607.1| acyl-CoA synthetase short-chain family membe... 540 e-153
Alignment gi|NP_001098809.1| acetyl-coenzyme A synthetase, cytoplasmic [B... 147 2e-35
Alignment gi|NP_777171.1| acetyl-coenzyme A synthetase 2-like, mitochondr... 143 5e-34
Alignment gi|NP_777107.1| acyl-coenzyme A synthetase ACSM1, mitochondrial... 120 3e-27
Alignment gi|XP_002698032.1| PREDICTED: acyl-coenzyme A synthetase ACSM2,... 116 5e-26
Alignment gi|XP_613318.4| PREDICTED: acyl-coenzyme A synthetase ACSM2, mi... 116 5e-26
Alignment gi|XP_002698062.1| PREDICTED: acyl-CoA synthetase medium-chain ... 108 2e-23
Alignment gi|XP_002698030.1| PREDICTED: acyl-CoA synthetase medium-chain ... 100 6e-21
Alignment gi|XP_586827.3| PREDICTED: acyl-CoA synthetase medium-chain fam... 100 6e-21
Alignment gi|NP_001095422.1| acyl-CoA synthetase medium-chain family memb... 92 2e-18
>ref|NP_001095607.1| acyl-CoA synthetase short-chain family member 3, mitochondrial
precursor [Bos taurus].
Length = 686
Score = 540 bits (1392), Expect = e-153
Identities = 263/284 (92%), Positives = 273/284 (96%)
Frame = +3
Query: 12 QDSGAALGKQYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCI 191
QD GAALGKQYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCI
Sbjct: 402 QDPGAALGKQYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCI 461
Query: 192 GLGNSKTPPPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEA 371
GLGNSKTPPPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEA
Sbjct: 462 GLGNSKTPPPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEA 521
Query: 372 FKHLYFEKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVA 551
FKHLYFEKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGA+EES+LS G VA
Sbjct: 522 FKHLYFEKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGALEESILSLGIVA 581
Query: 552 DCAVVGKEDPLKGHVPLALCVLRKDINITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQL 731
DCAVVGKED LKGH+PLALCVL+KDIN TE VLEEIV+HVRQ+IGPVAAFRKAVFV+QL
Sbjct: 582 DCAVVGKEDSLKGHIPLALCVLKKDINTTEEHVLEEIVKHVRQTIGPVAAFRKAVFVKQL 641
Query: 732 PKTRSGKIPRAALSALVNGKPYKVTPTIEDPSIFGHIEEVLKQA 863
PKTRSGKIPR+ LSALVNGKPYKV+PTIEDP IF HIE +LKQA
Sbjct: 642 PKTRSGKIPRSTLSALVNGKPYKVSPTIEDPGIFEHIEAMLKQA 685
>ref|NP_001098809.1| acetyl-coenzyme A synthetase, cytoplasmic [Bos taurus].
Length = 701
Score = 147 bits (372), Expect = 2e-35
Identities = 96/268 (35%), Positives = 139/268 (51%), Gaps = 4/268 (1%)
Frame = +3
Query: 39 QYSLTRFKTLFVAGERCDVETLEWSKKVF---RVPVLDHWWQTETGSPITASCIGLGNSK 209
++S + L GE + E W +V R P++D +WQTETG + G K
Sbjct: 426 KHSRASLQVLGTVGEPINPEAWLWYHRVVGAQRCPIVDTFWQTETGGHMLTPLPGAIPMK 485
Query: 210 TPPPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEAFKHLYF 389
PG A G IL+++ ++L+ G +V K P P G ++ N E F+ YF
Sbjct: 486 ---PGSATFPFFGVAPAILNESGEELEGEAEGYLVFKQPWP-GIMRTVYGNHERFETTYF 541
Query: 390 EKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVG 569
+KFPGYY T D D++GY ++ R+DD++NV+GH +S +E +L+ H VA+ AVVG
Sbjct: 542 KKFPGYYVTGDGCRRDKDGYYWITGRIDDMLNVSGHLLSTAEVESALVEHKAVAEAAVVG 601
Query: 570 KEDPLKGHVPLALCVLRKDINITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSG 749
P+KG L V D +I + EE+ + +R+ IGP+A LPKTRSG
Sbjct: 602 HPHPVKGEC-LYCFVTLCDGHIFSPALTEELKKQIREKIGPIATPDYIQNAPGLPKTRSG 660
Query: 750 KIPRAALSALV-NGKPYKVTPTIEDPSI 830
KI R L + N T T+ DPSI
Sbjct: 661 KIMRRVLRKIAQNDHDLGDTSTVVDPSI 688
>ref|NP_777171.1| acetyl-coenzyme A synthetase 2-like, mitochondrial [Bos taurus].
Length = 675
Score = 143 bits (360), Expect = 5e-34
Identities = 90/277 (32%), Positives = 139/277 (50%), Gaps = 8/277 (2%)
Frame = +3
Query: 36 KQYSLTRFKTLFVAGERCDVETLEWSKKVF---RVPVLDHWWQTETGSPITASCIGLGNS 206
K+Y + +TL GE + E EW +V R ++D WWQTETG CI S
Sbjct: 389 KKYDRSSLRTLGSVGEPINHEAWEWLHRVVGDSRCTLVDTWWQTETGG----ICISPRPS 444
Query: 207 KTPP---PGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEAFK 377
+ P A + + G +++D+ L+ + + PG ++ + + F
Sbjct: 445 EEGAEILPCMAMRPLFGIVPVLMDEKGNVLEGGDVSGALCLSQAWPGMARTIYGDHQRFL 504
Query: 378 HLYFEKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADC 557
YFE +PGYY T D Y EEGY + R+DDVIN++GHR+ IE+++ H V +
Sbjct: 505 DAYFETYPGYYFTGDGAYRTEEGYYEITGRMDDVINISGHRLGTAEIEDAMADHPAVPET 564
Query: 558 AVVGKEDPLKGHVPLALCVLRKDINITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPK 737
AV+G +KG A VL+ D+ + V++E+ V I A + + V++LPK
Sbjct: 565 AVIGYPHDIKGEAAFAFVVLKDDVGDVD-VVVKELRSVVADKIAKYAVPDQVLVVKRLPK 623
Query: 738 TRSGKIPRAALSALVNGKPYKV--TPTIEDPSIFGHI 842
TRSGK+ R L +V G+ + T T+EDP + I
Sbjct: 624 TRSGKVMRRLLRKIVMGRAQDLGDTTTLEDPGVITEI 660
>ref|NP_777107.1| acyl-coenzyme A synthetase ACSM1, mitochondrial [Bos taurus].
Length = 577
Score = 120 bits (302), Expect = 3e-27
Identities = 86/253 (33%), Positives = 125/253 (49%), Gaps = 6/253 (2%)
Frame = +3
Query: 30 LGKQYSLTRFKTL---FVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIGLG 200
L + Y+ RF TL GE E E K+ V + + Q+E G SC L
Sbjct: 325 LQQNYTSLRFPTLEHCCTGGEALLPEEQEQWKRQTGVLLYQAYGQSEAG----ISCGTLR 380
Query: 201 NSKTPPPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLP--LPPGAFSGLWKNQEAF 374
K P G GK++P +++ I+DD GNI +++ P G F N E
Sbjct: 381 GMKIKP-GSMGKAIPPFDIQIIDDKGNIQPPNTEGNIGIRIKPTRPIGLFMYYENNPEKT 439
Query: 375 KHLYFEKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVAD 554
+ F Y+T D +DEEGY + + R DDVIN +G+R+ +E +L H VA+
Sbjct: 440 AEVECGDF---YNTGDRATIDEEGYFWFLGRSDDVINASGYRVGPAEVENALAEHPAVAE 496
Query: 555 CAVVGKEDPLKGHVPLALCVLRKDINITE-GQVLEEIVQHVRQSIGPVAAFRKAVFVQQL 731
AVV DP++G V A VL + + + G++ +E+ QHV+ P RK FV +L
Sbjct: 497 SAVVSSPDPVRGEVVKAFIVLNPEFSSRDPGELTKELQQHVKSVTAPYKYPRKVEFVSEL 556
Query: 732 PKTRSGKIPRAAL 770
PKT +GKI R+ L
Sbjct: 557 PKTITGKIKRSEL 569
>ref|XP_002698032.1| PREDICTED: acyl-coenzyme A synthetase ACSM2, mitochondrial-like [Bos
taurus].
Length = 580
Score = 116 bits (291), Expect = 5e-26
Identities = 86/248 (34%), Positives = 122/248 (49%), Gaps = 5/248 (2%)
Frame = +3
Query: 42 YSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIGLGNSKTPP- 218
Y K AGE + E E + + + + + QTET + GN K
Sbjct: 335 YKFKSLKHCVSAGEPINPEVTEQWRNRTGLDIYEGYGQTET-------VLICGNFKGMKI 387
Query: 219 -PGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLP--LPPGAFSGLWKNQEAFKHLYF 389
PG GK P ++V ILD N L G+I +++ P G F+ N
Sbjct: 388 KPGSMGKPSPAFDVKILDVNGNVLPPGKEGDIGIRVRPNRPLGLFTHYIDNPTKTASTLR 447
Query: 390 EKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVG 569
F Y T D GYMDE+GY + +SR DD+I +G+RI +E +L+ H VA+ AVV
Sbjct: 448 GNF---YITGDRGYMDEDGYFWFVSRADDIILSSGYRIGPFEVESALIEHPAVAESAVVS 504
Query: 570 KEDPLKGHVPLALCVLRKDI-NITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRS 746
DP++G V A VL D + + Q+ +EI +HV+++ P RK F+Q+LPKT S
Sbjct: 505 SPDPIRGEVVKAFIVLNPDYKSHDQEQLKKEIQEHVKRNTAPYKYPRKVEFIQELPKTIS 564
Query: 747 GKIPRAAL 770
GKI R L
Sbjct: 565 GKIKRNEL 572
>ref|XP_613318.4| PREDICTED: acyl-coenzyme A synthetase ACSM2, mitochondrial-like [Bos
taurus].
Length = 580
Score = 116 bits (291), Expect = 5e-26
Identities = 86/248 (34%), Positives = 122/248 (49%), Gaps = 5/248 (2%)
Frame = +3
Query: 42 YSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIGLGNSKTPP- 218
Y K AGE + E E + + + + + QTET + GN K
Sbjct: 335 YKFKSLKHCVSAGEPINPEVTEQWRNRTGLDIYEGYGQTET-------VLICGNFKGMKI 387
Query: 219 -PGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLP--LPPGAFSGLWKNQEAFKHLYF 389
PG GK P ++V ILD N L G+I +++ P G F+ N
Sbjct: 388 KPGSMGKPSPAFDVKILDVNGNVLPPGKEGDIGIRVRPNRPLGLFTHYIDNPTKTASTLR 447
Query: 390 EKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVG 569
F Y T D GYMDE+GY + +SR DD+I +G+RI +E +L+ H VA+ AVV
Sbjct: 448 GNF---YITGDRGYMDEDGYFWFVSRADDIILSSGYRIGPFEVESALIEHPAVAESAVVS 504
Query: 570 KEDPLKGHVPLALCVLRKDI-NITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRS 746
DP++G V A VL D + + Q+ +EI +HV+++ P RK F+Q+LPKT S
Sbjct: 505 SPDPIRGEVVKAFIVLNPDYKSHDQEQLKKEIQEHVKRNTAPYKYPRKVEFIQELPKTIS 564
Query: 747 GKIPRAAL 770
GKI R L
Sbjct: 565 GKIKRNEL 572
>ref|XP_002698062.1| PREDICTED: acyl-CoA synthetase medium-chain family member 4 [Bos
taurus].
Length = 580
Score = 108 bits (269), Expect = 2e-23
Identities = 84/248 (33%), Positives = 118/248 (47%), Gaps = 3/248 (1%)
Frame = +3
Query: 36 KQYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIGLGNSKTP 215
K+Y + + GE + E LE K + + + + QTE G I A+ G +
Sbjct: 333 KRYKFKKLRHCLTGGEPLNPEVLEQWKVQTGLELYEGYGQTEVGI-ICANQKG----QEI 387
Query: 216 PPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPL--PPGAFSGLWKNQEAFKHLYF 389
PG GK V Y+V I+D+N L G I ++L P FS N E
Sbjct: 388 KPGSMGKGVLPYDVQIIDENGNILPPGKEGEIALRLTSTRPFCFFSEYVDNPEKTAATIR 447
Query: 390 EKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVG 569
F Y T D G MD +GY + + R DDVI +G+RI +E +L+ H V + AVV
Sbjct: 448 GNF---YVTGDRGVMDSDGYFWFVGRADDVIISSGYRIGPFEVESALIEHPAVVESAVVS 504
Query: 570 KEDPLKGHVPLALCVLRKDINITEGQVLE-EIVQHVRQSIGPVAAFRKAVFVQQLPKTRS 746
DP++G V A VL + + L E+ HV++S P RK FV++LPKT +
Sbjct: 505 SPDPVRGEVVKAFVVLSAPFKSSNPEKLTLELQDHVKKSTAPYKYPRKVEFVKELPKTIT 564
Query: 747 GKIPRAAL 770
GKI R L
Sbjct: 565 GKIKRNVL 572
>ref|XP_002698030.1| PREDICTED: acyl-CoA synthetase medium-chain family member 5-like [Bos
taurus].
Length = 590
Score = 99.8 bits (247), Expect = 6e-21
Identities = 71/220 (32%), Positives = 110/220 (50%), Gaps = 13/220 (5%)
Frame = +3
Query: 150 WQTETGSPITASCIGLGNSKTP-----------PPGQAGKSVPGYNVMILDDNMQKLKAR 296
W+++TG + G G S+T G GK+ P Y+V ++D+ L
Sbjct: 358 WKSQTGLELHE---GYGQSETVVICANPKGMKIKSGSMGKASPPYDVQVVDEEGNILPPG 414
Query: 297 CLGNIVVKL-PLPPGAFSGLWKNQEAFKHLYFEKFPGYYDTMDAGYMDEEGYVYVMSRVD 473
GN+ +++ P P F + + K E+ +Y T D +MD++GY + M R D
Sbjct: 415 EEGNVAIRVRPTRPFCFFTCYLDNPE-KTAASER-GDFYITGDRAHMDKDGYFWFMGRND 472
Query: 474 DVINVAGHRISAGAIEESLLSHGTVADCAVVGKEDPLKGHVPLALCVLRKDINITEGQVL 653
DVIN + +RI +E +L H V + AVV DP++G V A VL + + + L
Sbjct: 473 DVINSSSYRIGPVEVESALAEHPAVLESAVVSSPDPIRGEVVKAFIVLSPAYSSHDPEKL 532
Query: 654 -EEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSGKIPRAAL 770
+E+ +HV++ P RK FV +LPKT SGKI R+ L
Sbjct: 533 TQELQEHVKRVTAPYKYPRKMAFVSELPKTVSGKIQRSKL 572
>ref|XP_586827.3| PREDICTED: acyl-CoA synthetase medium-chain family member 5 isoform
1, partial [Bos taurus].
Length = 283
Score = 99.8 bits (247), Expect = 6e-21
Identities = 71/220 (32%), Positives = 110/220 (50%), Gaps = 13/220 (5%)
Frame = +3
Query: 150 WQTETGSPITASCIGLGNSKTP-----------PPGQAGKSVPGYNVMILDDNMQKLKAR 296
W+++TG + G G S+T G GK+ P Y+V ++D+ L
Sbjct: 51 WKSQTGLELHE---GYGQSETVVICANPKGMKIKSGSMGKASPPYDVQVVDEEGNILPPG 107
Query: 297 CLGNIVVKL-PLPPGAFSGLWKNQEAFKHLYFEKFPGYYDTMDAGYMDEEGYVYVMSRVD 473
GN+ +++ P P F + + K E+ +Y T D +MD++GY + M R D
Sbjct: 108 EEGNVAIRVRPTRPFCFFTCYLDNPE-KTAASER-GDFYITGDRAHMDKDGYFWFMGRND 165
Query: 474 DVINVAGHRISAGAIEESLLSHGTVADCAVVGKEDPLKGHVPLALCVLRKDINITEGQVL 653
DVIN + +RI +E +L H V + AVV DP++G V A VL + + + L
Sbjct: 166 DVINSSSYRIGPVEVESALAEHPAVLESAVVSSPDPIRGEVVKAFIVLSPAYSSHDPEKL 225
Query: 654 -EEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSGKIPRAAL 770
+E+ +HV++ P RK FV +LPKT SGKI R+ L
Sbjct: 226 TQELQEHVKRVTAPYKYPRKMAFVSELPKTVSGKIQRSKL 265
>ref|NP_001095422.1| acyl-CoA synthetase medium-chain family member 2A [Bos taurus].
Length = 550
Score = 91.7 bits (226), Expect = 2e-18
Identities = 73/246 (29%), Positives = 107/246 (43%), Gaps = 3/246 (1%)
Frame = +3
Query: 42 YSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIGLGNSKTPPP 221
Y K F GE +TLE K + +L+ + QTET
Sbjct: 327 YKFPHLKCCFSGGETLLPDTLEKWKAQTGLDILEFYGQTET------------------- 367
Query: 222 GQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKL-PLPP-GAFSGLWKNQEAFKHLYFEK 395
++DD L G++ +++ P+ P G FSG N E +
Sbjct: 368 -------------VIDDKGNVLPPGTEGDVGIRVKPIRPIGIFSGYVDNLEKTEANIRGD 414
Query: 396 FPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVGKE 575
F + D D+EGY M R DD+IN +G+RI +E +L+ H V + AVV
Sbjct: 415 F---WVLGDRAIKDQEGYFRFMGRTDDIINSSGYRIGPSEVENALMEHPAVVETAVVSSP 471
Query: 576 DPLKGHVPLALCVLRKD-INITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSGK 752
DP++G V A VL ++ ++ +E+ QHV+ P RK FV LPKT +GK
Sbjct: 472 DPIRGEVVKAFVVLAPHFLSRDPDELTKELQQHVKLVTAPYKYPRKIEFVLDLPKTNTGK 531
Query: 753 IPRAAL 770
I R+ L
Sbjct: 532 IQRSKL 537
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,829,932
Number of extensions: 1652001
Number of successful extensions: 5165
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 5141
Number of HSP's successfully gapped: 12
Length of query: 524
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 417
Effective length of database: 14,140,958
Effective search space: 5896779486
Effective search space used: 5896779486
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003506
(1573 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532637.2| PREDICTED: similar to CG6432-PA [Canis familiar... 556 e-158
Alignment gi|XP_534395.2| PREDICTED: similar to Acetyl-coenzyme A synthet... 130 3e-30
Alignment gi|XP_534200.2| PREDICTED: similar to acetyl-CoA synthetase 2-l... 123 4e-28
Alignment gi|XP_851120.1| PREDICTED: similar to SA hypertension-associate... 116 7e-26
Alignment gi|XP_536948.2| PREDICTED: similar to olfactory specific medium... 107 2e-23
Alignment gi|XP_851280.1| PREDICTED: similar to Acetyl-coenzyme A synthet... 102 1e-21
Alignment gi|XP_536949.2| PREDICTED: similar to kidney-specific protein (... 100 5e-21
Alignment gi|XP_537673.2| PREDICTED: similar to F46E10.1a [Canis familiar... 50 6e-06
>ref|XP_532637.2| PREDICTED: similar to CG6432-PA [Canis familiaris].
Length = 629
Score = 556 bits (1432), Expect = e-158
Identities = 270/284 (95%), Positives = 278/284 (97%)
Frame = +3
Query: 12 QDSGAALGKQYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCI 191
QD GAALG+QYSLTRFKTLFVAGERCDVETLEWSKK FRVPVLDHWWQTETGSPITASCI
Sbjct: 345 QDPGAALGRQYSLTRFKTLFVAGERCDVETLEWSKKAFRVPVLDHWWQTETGSPITASCI 404
Query: 192 GLGNSKTPPPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEA 371
GLGNSKTPPPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEA
Sbjct: 405 GLGNSKTPPPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEA 464
Query: 372 FKHLYFEKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVA 551
FKHLYFEKFPGYYDTMDAGYMDEEGY+YVMSRVDDVINVAGHRISAGAIEES+LSHGTVA
Sbjct: 465 FKHLYFEKFPGYYDTMDAGYMDEEGYLYVMSRVDDVINVAGHRISAGAIEESVLSHGTVA 524
Query: 552 DCAVVGKEDPLKGHVPLALCVLRKDINITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQL 731
DCAVVGKEDPLKGHVPLALCVLRKDIN TE QVLEEIV+HVRQSIGPVAAFR AVFV+QL
Sbjct: 525 DCAVVGKEDPLKGHVPLALCVLRKDINTTEEQVLEEIVKHVRQSIGPVAAFRNAVFVKQL 584
Query: 732 PKTRSGKIPRAALSALVNGKPYKVTPTIEDPSIFGHIEEVLKQA 863
PKTRSGKIPR+ALSALVNGKPYK+TPTIEDPSIF HIEEVLKQ+
Sbjct: 585 PKTRSGKIPRSALSALVNGKPYKITPTIEDPSIFRHIEEVLKQS 628
>ref|XP_534395.2| PREDICTED: similar to Acetyl-coenzyme A synthetase, cytoplasmic
(Acetate--CoA ligase) (Acyl-activating enzyme)
(Acetyl-CoA synthetase) (ACS) (AceCS) [Canis familiaris].
Length = 657
Score = 130 bits (328), Expect = 3e-30
Identities = 84/268 (31%), Positives = 129/268 (48%), Gaps = 4/268 (1%)
Frame = +3
Query: 39 QYSLTRFKTLFVAGERCDVETLEWSKKVF---RVPVLDHWWQTETGSPITASCIGLGNSK 209
++S + L GE + E W +V R ++D +WQTET P
Sbjct: 401 RHSRASLQVLGTVGEPINPEAWLWYHRVVGAQRCSIVDTFWQTETTFPFF---------- 450
Query: 210 TPPPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEAFKHLYF 389
G IL+++ ++L+ G +V K P P G ++ N E F+ YF
Sbjct: 451 ------------GVAPAILNESGEELEGEAEGYLVFKQPWP-GIMRTVYGNHERFEATYF 497
Query: 390 EKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVG 569
+KFPGYY T D D++GY ++ R+DD++NV+GH +S +E +L+ H +A+ AVVG
Sbjct: 498 KKFPGYYVTGDGCRRDQDGYYWITGRIDDMLNVSGHLLSTAEVESALVEHEAIAEAAVVG 557
Query: 570 KEDPLKGHVPLALCVLRKDINITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSG 749
P+KG L + + EE+ + +R+ IGP+A LPKTRSG
Sbjct: 558 HPHPVKGECLYCFVTLCDGYTFSP-TLTEELKKQIREKIGPIATPDYIQNAPGLPKTRSG 616
Query: 750 KIPRAALSALV-NGKPYKVTPTIEDPSI 830
KI R L + N T T+ DP++
Sbjct: 617 KIMRRVLRKIAQNDHDLGDTSTVADPTV 644
>ref|XP_534200.2| PREDICTED: similar to acetyl-CoA synthetase 2-like [Canis
familiaris].
Length = 628
Score = 123 bits (309), Expect = 4e-28
Identities = 83/278 (29%), Positives = 139/278 (50%), Gaps = 9/278 (3%)
Frame = +3
Query: 36 KQYSLTRFKTLFVAGERCDVETLEWSKKVF---RVPVLDHWWQTETGSPITASCIGLGNS 206
K+Y + +TL GE + E EW KV R ++D WWQTETG CI S
Sbjct: 343 KKYDRSSLRTLGSVGEPINFEAWEWLHKVVGDGRCTLVDTWWQTETGG----ICIAPRPS 398
Query: 207 KTPP---PGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLW-KNQEAF 374
+ PG A + G +++D+ + ++ + + PG ++ +++++
Sbjct: 399 EEGAEILPGMAMRPFFGIVPVLMDEKGKVVEGGNISGALCLSQAWPGMARTIYGDHRDSW 458
Query: 375 KHLYFEKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVAD 554
+ P +Y T D Y E+GY + R+DDVIN++GHR+ IE+++ +H V +
Sbjct: 459 RPT--SALPSHYFTGDGAYRTEDGYYQITGRMDDVINISGHRLGTAEIEDAMANHPAVPE 516
Query: 555 CAVVGKEDPLKGHVPLALCVLRKDINITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLP 734
AV+G +KG A VL+ + T+ V++E+ V I A + + V++LP
Sbjct: 517 TAVIGYPHDIKGEGAFAFIVLKDNTGDTDA-VVKELKSAVATKIAKYAVPDQILVVKRLP 575
Query: 735 KTRSGKIPRAALSALVNGKPYKV--TPTIEDPSIFGHI 842
KTRSGK+ R L ++ G+ + T+EDPS+ I
Sbjct: 576 KTRSGKVMRRLLRKIITGRTQDLGDITTLEDPSVITEI 613
>ref|XP_851120.1| PREDICTED: similar to SA hypertension-associated homolog isoform 1
[Canis familiaris].
Length = 580
Score = 116 bits (290), Expect = 7e-26
Identities = 88/248 (35%), Positives = 123/248 (49%), Gaps = 5/248 (2%)
Frame = +3
Query: 42 YSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIGLGNSKTPP- 218
Y K AGE + E E +K + + + + QTET + GN K
Sbjct: 335 YKFKSLKHCVSAGEPINPEVTEQWRKRTGLDIYEGYGQTET-------VLICGNFKGMKI 387
Query: 219 -PGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVK-LPLPP-GAFSGLWKNQEAFKHLYF 389
PG GK P ++V ILD N L G+I ++ LP P G F+ N
Sbjct: 388 KPGSMGKPSPAFDVKILDVNGNVLPPGQEGDIGIQVLPNRPFGLFTHYVDNPTKTASTLR 447
Query: 390 EKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVG 569
F Y T D GYMDE+GY + ++R DD+I +G+RI +E +L H VA+ AVV
Sbjct: 448 GNF---YITGDRGYMDEDGYFWFVARSDDIILSSGYRIGPFEVESALTEHPAVAEAAVVS 504
Query: 570 KEDPLKGHVPLALCVLRKDI-NITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRS 746
DP++G V A VL D + + Q+ +EI +HV+++ P RK F+Q+LPKT S
Sbjct: 505 SPDPIRGEVVKAFIVLTPDYKSCDQEQLKKEIQEHVKKTTAPYKYPRKVEFIQELPKTIS 564
Query: 747 GKIPRAAL 770
GKI R L
Sbjct: 565 GKIKRNEL 572
>ref|XP_536948.2| PREDICTED: similar to olfactory specific medium-chain acyl CoA
synthetase [Canis familiaris].
Length = 583
Score = 107 bits (268), Expect = 2e-23
Identities = 84/248 (33%), Positives = 118/248 (47%), Gaps = 3/248 (1%)
Frame = +3
Query: 36 KQYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIGLGNSKTP 215
K+Y + + GE + E LE K + + + + QTE G I A+ G +
Sbjct: 336 KRYKFKKLQHCLTGGEPLNPEVLEQWKVQTGLELYEGYGQTEVGI-ICANQKG----QEI 390
Query: 216 PPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPL--PPGAFSGLWKNQEAFKHLYF 389
PG GK V Y+V I+D+N L G I ++L P FS N E
Sbjct: 391 KPGSMGKGVLPYDVQIIDENGNVLPPGKEGEIALRLKSTRPFCFFSEYVDNPEKTAATIR 450
Query: 390 EKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVG 569
F Y T D G MD +GY + +SR DDVI +G+RI +E +L+ H V + AVV
Sbjct: 451 GDF---YVTGDRGIMDSDGYFWFVSRADDVIISSGYRIGPFEVESALIEHPAVVESAVVS 507
Query: 570 KEDPLKGHVPLALCVLRKDINITEGQVLE-EIVQHVRQSIGPVAAFRKAVFVQQLPKTRS 746
DP++G V A VL + + L E+ HV+++ P RK FV +LPKT +
Sbjct: 508 SPDPIRGEVVKAFVVLSAPFKSSNPEKLTLELQDHVKKTTAPYKYPRKVEFVPELPKTVT 567
Query: 747 GKIPRAAL 770
GKI R L
Sbjct: 568 GKIKRHVL 575
>ref|XP_851280.1| PREDICTED: similar to Acetyl-coenzyme A synthetase (Acetate--CoA
ligase) (Acyl-activating enzyme) (Acetyl-CoA synthetase)
(ACS) (AceCS) [Canis familiaris].
Length = 616
Score = 102 bits (253), Expect = 1e-21
Identities = 78/247 (31%), Positives = 114/247 (46%), Gaps = 3/247 (1%)
Frame = +3
Query: 39 QYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIGLGNSKTPP 218
+Y + GE + + E K + + + + Q+ET C L K
Sbjct: 362 RYQFQSLRHCVTGGEALNPDVREKWKSQVGLELHEGYGQSET----VLICANLKGMKIKA 417
Query: 219 PGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKL-PLPPGAFSGLW-KNQEAFKHLYFE 392
G GK+ P Y+V ++DD L GNI V++ P P F + N E K
Sbjct: 418 -GSMGKAFPPYDVQVVDDEGNILPPGEQGNIAVRVKPTQPFCFFSCYLDNPEKTKATERG 476
Query: 393 KFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVGK 572
F Y T D + D++GY + R DDVIN + +RI +E +L H V + AVV
Sbjct: 477 DF---YITGDQAHKDKDGYFWFTGRNDDVINSSSYRIGPVEVENALAEHPAVLEAAVVSS 533
Query: 573 EDPLKGHVPLALCVLRKDINITEGQVL-EEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSG 749
DP++G V A VL + + + L +E+ +HV++ P RK FV +LPKT SG
Sbjct: 534 PDPIRGEVVKAFIVLSPAYSSQDPKKLTQELQEHVKRETAPYKYPRKMAFVSELPKTTSG 593
Query: 750 KIPRAAL 770
KI R L
Sbjct: 594 KIQRNIL 600
>ref|XP_536949.2| PREDICTED: similar to kidney-specific protein (KS) [Canis
familiaris].
Length = 616
Score = 100 bits (248), Expect = 5e-21
Identities = 75/246 (30%), Positives = 115/246 (46%), Gaps = 3/246 (1%)
Frame = +3
Query: 42 YSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIGLGNSKTPPP 221
Y + + G+ + LE + + + + + QTETG +C N K P
Sbjct: 365 YKFPHLQNCYSGGDALLPDILENWRARTGLDIRELYGQTETG----ITCRVSKNMKIKP- 419
Query: 222 GQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKL-PLPP-GAFSGLWKNQEAFKHLYFEK 395
G G ++P Y+V +LDD L G+I +++ P+ P G FSG + E
Sbjct: 420 GYLGTAIPHYDVQVLDDKGNVLPPGIEGDIGIRVKPIRPIGIFSGYVDSPEKTAASIRGD 479
Query: 396 FPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVGKE 575
F + D D++GY + R DD+IN +G+RI +E +L+ H V + AV+
Sbjct: 480 F---WILGDRAIKDQDGYFRFIGRSDDIINSSGYRIGPSEVENALMEHPAVIETAVISSP 536
Query: 576 DPLKGHVPLALCVLRKDINITE-GQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSGK 752
DP++ V A VL Q+ +E+ QHV+ P RK FV +LPKT +GK
Sbjct: 537 DPVRKEVVKAFVVLAPQFLFHNLDQLTKELQQHVKSVTAPYKYPRKVEFVSELPKTNTGK 596
Query: 753 IPRAAL 770
I R L
Sbjct: 597 IQRKKL 602
>ref|XP_537673.2| PREDICTED: similar to F46E10.1a [Canis familiaris].
Length = 652
Score = 50.1 bits (118), Expect = 6e-06
Identities = 38/122 (31%), Positives = 53/122 (43%)
Frame = +3
Query: 405 YYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVGKEDPL 584
+Y T D +D++G+ ++ R D+I G I +E+ H V + VVG +D
Sbjct: 525 WYRTGDIAAIDKQGFCKIVGRSKDMIIRGGENIYPAELEDFFHKHPQVLEVQVVGVKDAR 584
Query: 585 KGHVPLALCVLRKDINITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSGKIPRA 764
G A L+K TE EEI + I R VFV P T SGKI +
Sbjct: 585 MGEEICACIRLKKGEKTTE----EEIKAFCKGKISHFKIPRYIVFVTDYPLTVSGKIQKF 640
Query: 765 AL 770
L
Sbjct: 641 KL 642
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,573,824
Number of extensions: 1712228
Number of successful extensions: 5359
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5339
Number of HSP's successfully gapped: 8
Length of query: 524
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 417
Effective length of database: 15,307,552
Effective search space: 6383249184
Effective search space used: 6383249184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003506
(1573 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_078836.1| acyl-CoA synthetase short-chain family member 3... 554 e-158
Alignment gi|NP_001070020.2| acetyl-coenzyme A synthetase, cytoplasmic is... 149 5e-36
Alignment gi|NP_061147.1| acetyl-coenzyme A synthetase, cytoplasmic isofo... 149 5e-36
Alignment gi|NP_001229322.1| acetyl-coenzyme A synthetase, cytoplasmic is... 149 5e-36
Alignment gi|NP_115890.2| acetyl-coenzyme A synthetase 2-like, mitochondr... 138 1e-32
Alignment gi|NP_443188.2| acyl-coenzyme A synthetase ACSM1, mitochondrial... 119 1e-26
Alignment gi|NP_005613.2| acyl-coenzyme A synthetase ACSM3, mitochondrial... 110 5e-24
Alignment gi|NP_001010845.1| acyl-coenzyme A synthetase ACSM2A, mitochond... 109 8e-24
Alignment gi|NP_001098539.1| acyl-coenzyme A synthetase ACSM2B, mitochond... 108 2e-23
Alignment gi|NP_872423.3| acyl-coenzyme A synthetase ACSM2B, mitochondria... 108 2e-23
>ref|NP_078836.1| acyl-CoA synthetase short-chain family member 3, mitochondrial
precursor [Homo sapiens].
Length = 686
Score = 554 bits (1428), Expect = e-158
Identities = 267/284 (94%), Positives = 278/284 (97%)
Frame = +3
Query: 12 QDSGAALGKQYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCI 191
QD GAALGKQYSLTRFKTLFVAGERCDVETLEWSK VFRVPVLDHWWQTETGSPITASC+
Sbjct: 403 QDPGAALGKQYSLTRFKTLFVAGERCDVETLEWSKNVFRVPVLDHWWQTETGSPITASCV 462
Query: 192 GLGNSKTPPPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEA 371
GLGNSKTPPPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEA
Sbjct: 463 GLGNSKTPPPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEA 522
Query: 372 FKHLYFEKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVA 551
FKHLYFEKFPGYYDTMDAGYMDEEGY+YVMSRVDDVINVAGHRISAGAIEES+LSHGTVA
Sbjct: 523 FKHLYFEKFPGYYDTMDAGYMDEEGYLYVMSRVDDVINVAGHRISAGAIEESILSHGTVA 582
Query: 552 DCAVVGKEDPLKGHVPLALCVLRKDINITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQL 731
DCAVVGKEDPLKGHVPLALCVLRKDIN TE QVLEEIV+HVRQ+IGPVAAFR AVFV+QL
Sbjct: 583 DCAVVGKEDPLKGHVPLALCVLRKDINATEEQVLEEIVKHVRQNIGPVAAFRNAVFVKQL 642
Query: 732 PKTRSGKIPRAALSALVNGKPYKVTPTIEDPSIFGHIEEVLKQA 863
PKTRSGKIPR+ALSA+VNGKPYK+T TIEDPSIFGH+EE+LKQA
Sbjct: 643 PKTRSGKIPRSALSAIVNGKPYKITSTIEDPSIFGHVEEMLKQA 686
>ref|NP_001070020.2| acetyl-coenzyme A synthetase, cytoplasmic isoform 2 [Homo sapiens].
Length = 714
Score = 149 bits (377), Expect = 5e-36
Identities = 94/272 (34%), Positives = 140/272 (51%), Gaps = 4/272 (1%)
Frame = +3
Query: 39 QYSLTRFKTLFVAGERCDVETLEWSKKVF---RVPVLDHWWQTETGSPITASCIGLGNSK 209
++S + L GE + E W +V R P++D +WQTETG + G K
Sbjct: 439 KHSRASLQVLGTVGEPINPEAWLWYHRVVGAQRCPIVDTFWQTETGGHMLTPLPGATPMK 498
Query: 210 TPPPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEAFKHLYF 389
PG A G IL+++ ++L+ G +V K P P G ++ N E F+ YF
Sbjct: 499 ---PGSATFPFFGVAPAILNESGEELEGEAEGYLVFKQPWP-GIMRTVYGNHERFETTYF 554
Query: 390 EKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVG 569
+KFPGYY T D D++GY ++ R+DD++NV+GH +S +E +L+ H VA+ AVVG
Sbjct: 555 KKFPGYYVTGDGCQRDQDGYYWITGRIDDMLNVSGHLLSTAEVESALVEHEAVAEAAVVG 614
Query: 570 KEDPLKGHVPLALCVLRKDINITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSG 749
P+KG L V D + ++ EE+ + +R+ IGP+A LPKTRSG
Sbjct: 615 HPHPVKGEC-LYCFVTLCDGHTFSPKLTEELKKQIREKIGPIATPDYIQNAPGLPKTRSG 673
Query: 750 KIPRAALSALV-NGKPYKVTPTIEDPSIFGHI 842
KI R L + N T+ DPS+ H+
Sbjct: 674 KIMRRVLRKIAQNDHDLGDMSTVADPSVISHL 705
>ref|NP_061147.1| acetyl-coenzyme A synthetase, cytoplasmic isoform 1 [Homo sapiens].
Length = 701
Score = 149 bits (377), Expect = 5e-36
Identities = 94/272 (34%), Positives = 140/272 (51%), Gaps = 4/272 (1%)
Frame = +3
Query: 39 QYSLTRFKTLFVAGERCDVETLEWSKKVF---RVPVLDHWWQTETGSPITASCIGLGNSK 209
++S + L GE + E W +V R P++D +WQTETG + G K
Sbjct: 426 KHSRASLQVLGTVGEPINPEAWLWYHRVVGAQRCPIVDTFWQTETGGHMLTPLPGATPMK 485
Query: 210 TPPPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEAFKHLYF 389
PG A G IL+++ ++L+ G +V K P P G ++ N E F+ YF
Sbjct: 486 ---PGSATFPFFGVAPAILNESGEELEGEAEGYLVFKQPWP-GIMRTVYGNHERFETTYF 541
Query: 390 EKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVG 569
+KFPGYY T D D++GY ++ R+DD++NV+GH +S +E +L+ H VA+ AVVG
Sbjct: 542 KKFPGYYVTGDGCQRDQDGYYWITGRIDDMLNVSGHLLSTAEVESALVEHEAVAEAAVVG 601
Query: 570 KEDPLKGHVPLALCVLRKDINITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSG 749
P+KG L V D + ++ EE+ + +R+ IGP+A LPKTRSG
Sbjct: 602 HPHPVKGEC-LYCFVTLCDGHTFSPKLTEELKKQIREKIGPIATPDYIQNAPGLPKTRSG 660
Query: 750 KIPRAALSALV-NGKPYKVTPTIEDPSIFGHI 842
KI R L + N T+ DPS+ H+
Sbjct: 661 KIMRRVLRKIAQNDHDLGDMSTVADPSVISHL 692
>ref|NP_001229322.1| acetyl-coenzyme A synthetase, cytoplasmic isoform 3 [Homo sapiens].
Length = 606
Score = 149 bits (377), Expect = 5e-36
Identities = 94/272 (34%), Positives = 140/272 (51%), Gaps = 4/272 (1%)
Frame = +3
Query: 39 QYSLTRFKTLFVAGERCDVETLEWSKKVF---RVPVLDHWWQTETGSPITASCIGLGNSK 209
++S + L GE + E W +V R P++D +WQTETG + G K
Sbjct: 331 KHSRASLQVLGTVGEPINPEAWLWYHRVVGAQRCPIVDTFWQTETGGHMLTPLPGATPMK 390
Query: 210 TPPPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEAFKHLYF 389
PG A G IL+++ ++L+ G +V K P P G ++ N E F+ YF
Sbjct: 391 ---PGSATFPFFGVAPAILNESGEELEGEAEGYLVFKQPWP-GIMRTVYGNHERFETTYF 446
Query: 390 EKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVG 569
+KFPGYY T D D++GY ++ R+DD++NV+GH +S +E +L+ H VA+ AVVG
Sbjct: 447 KKFPGYYVTGDGCQRDQDGYYWITGRIDDMLNVSGHLLSTAEVESALVEHEAVAEAAVVG 506
Query: 570 KEDPLKGHVPLALCVLRKDINITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSG 749
P+KG L V D + ++ EE+ + +R+ IGP+A LPKTRSG
Sbjct: 507 HPHPVKGEC-LYCFVTLCDGHTFSPKLTEELKKQIREKIGPIATPDYIQNAPGLPKTRSG 565
Query: 750 KIPRAALSALV-NGKPYKVTPTIEDPSIFGHI 842
KI R L + N T+ DPS+ H+
Sbjct: 566 KIMRRVLRKIAQNDHDLGDMSTVADPSVISHL 597
>ref|NP_115890.2| acetyl-coenzyme A synthetase 2-like, mitochondrial precursor [Homo
sapiens].
Length = 689
Score = 138 bits (348), Expect = 1e-32
Identities = 90/288 (31%), Positives = 141/288 (48%), Gaps = 8/288 (2%)
Frame = +3
Query: 21 GAALGKQYSLTRFKTLFVAGERCDVETLEWSKKVF---RVPVLDHWWQTETGSPITASCI 191
G A K+Y + +TL GE + E EW +V R ++D WWQTETG CI
Sbjct: 398 GDAWVKKYDRSSLRTLGSVGEPINCEAWEWLHRVVGDSRCTLVDTWWQTETGG----ICI 453
Query: 192 GLGNSKTPP---PGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKN 362
S+ P A + G +++D+ ++ + + PG ++ +
Sbjct: 454 APRPSEEGAEILPAMAMRPFFGIVPVLMDEKGSVVEGSNVSGALCISQAWPGMARTIYGD 513
Query: 363 QEAFKHLYFEKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHG 542
+ F YF+ +PGYY T D Y E GY + R+DDVIN++GHR+ IE+++ H
Sbjct: 514 HQRFVDAYFKAYPGYYFTGDGAYRTEGGYYQITGRMDDVINISGHRLGTAEIEDAIADHP 573
Query: 543 TVADCAVVGKEDPLKGHVPLALCVLRKDINITEGQVLEEIVQHVRQSIGPVAAFRKAVFV 722
V + AV+G +KG A V+ KD V++E+ V I A + + V
Sbjct: 574 AVPESAVIGYPHDIKGEAAFAFIVV-KDSAGDSDVVVQELKSMVATKIAKYAVPDEILVV 632
Query: 723 QQLPKTRSGKIPRAALSALVNGKPYKV--TPTIEDPSIFGHIEEVLKQ 860
++LPKTRSGK+ R L ++ + ++ T T+EDPSI I V ++
Sbjct: 633 KRLPKTRSGKVMRRLLRKIITSEAQELGDTTTLEDPSIIAEILSVYQK 680
>ref|NP_443188.2| acyl-coenzyme A synthetase ACSM1, mitochondrial [Homo sapiens].
Length = 577
Score = 119 bits (297), Expect = 1e-26
Identities = 78/231 (33%), Positives = 124/231 (53%), Gaps = 2/231 (0%)
Frame = +3
Query: 105 EWSKKVFRVPVLDHWWQTETGSPITASCIGLGNSKTPPPGQAGKSVPGYNVMILDDNMQK 284
EW ++ + + +++ Q+ETG I A+ G+ PG GK+ P Y+V ++DD
Sbjct: 354 EWKRRTGLL-LYENYGQSETGL-ICATYWGMKIK----PGFMGKATPPYDVQVIDDKGSI 407
Query: 285 LKARCLGNIVVKL-PLPPGAFSGLWKNQEAFKHLYFEKFPGYYDTMDAGYMDEEGYVYVM 461
L GNI +++ P+ P + ++ + + +Y+T D G MDEEGY+ +
Sbjct: 408 LPPNTEGNIGIRIKPVRPVSLFMCYEGDP--EKTAKVECGDFYNTGDRGKMDEEGYICFL 465
Query: 462 SRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVGKEDPLKGHVPLALCVLRKD-INIT 638
R DD+IN +G+RI +E +L+ H VA+ AVVG DP++G V A VL ++
Sbjct: 466 GRSDDIINASGYRIGPAEVESALVEHPAVAESAVVGSPDPIRGEVVKAFIVLTPQFLSHD 525
Query: 639 EGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSGKIPRAALSALVNGK 791
+ Q+ +E+ QHV+ P RK FV +LPKT +GKI R L G+
Sbjct: 526 KDQLTKELQQHVKSVTAPYKYPRKVEFVSELPKTITGKIERKELRKKETGQ 576
>ref|NP_005613.2| acyl-coenzyme A synthetase ACSM3, mitochondrial isoform 1 [Homo
sapiens].
Length = 586
Score = 110 bits (274), Expect = 5e-24
Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 11/224 (4%)
Frame = +3
Query: 132 PVLDHWWQTETGSPI------TASCIGLGNSKTPP--PGQAGKSVPGYNVMILDDNMQKL 287
P + W+ +TG I T + + GN K PG GK P ++V I+D N L
Sbjct: 358 PDVTEKWRNKTGLDIYEGYGQTETVLICGNFKGMKIKPGSMGKPSPAFDVKIVDVNGNVL 417
Query: 288 KARCLGNIVVK-LPLPP-GAFSGLWKNQEAFKHLYFEKFPGYYDTMDAGYMDEEGYVYVM 461
G+I ++ LP P G F+ N F Y T D GYMD++GY + +
Sbjct: 418 PPGQEGDIGIQVLPNRPFGLFTHYVDNPSKTASTLRGNF---YITGDRGYMDKDGYFWFV 474
Query: 462 SRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVGKEDPLKGHVPLALCVLRKDI-NIT 638
+R DDVI +G+RI +E +L H +VA+ AVV DP++G V A VL D +
Sbjct: 475 ARADDVILSSGYRIGPFEVENALNEHPSVAESAVVSSPDPIRGEVVKAFVVLNPDYKSHD 534
Query: 639 EGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSGKIPRAAL 770
+ Q+++EI +HV+++ P RK F+Q+LPKT SGK R L
Sbjct: 535 QEQLIKEIQEHVKKTTAPYKYPRKVEFIQELPKTISGKTKRNEL 578
>ref|NP_001010845.1| acyl-coenzyme A synthetase ACSM2A, mitochondrial [Homo sapiens].
Length = 577
Score = 109 bits (272), Expect = 8e-24
Identities = 80/246 (32%), Positives = 118/246 (47%), Gaps = 3/246 (1%)
Frame = +3
Query: 42 YSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIGLGNSKTPPP 221
Y + GE ETLE + + + + + QTETG +C+ + + P
Sbjct: 326 YKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETG----LTCM-VSKTMKIKP 380
Query: 222 GQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKL-PLPP-GAFSGLWKNQEAFKHLYFEK 395
G G + Y+V I+DD L G+I +++ P+ P G FSG N +
Sbjct: 381 GYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGD 440
Query: 396 FPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVGKE 575
F + D G DE+GY M R DD+IN +G+RI +E +L+ H V + AV+
Sbjct: 441 F---WLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSP 497
Query: 576 DPLKGHVPLALCVLRKD-INITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSGK 752
DP++G V A VL ++ Q+ +E+ QHV+ P RK FV LPKT +GK
Sbjct: 498 DPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGK 557
Query: 753 IPRAAL 770
I RA L
Sbjct: 558 IQRAKL 563
>ref|NP_001098539.1| acyl-coenzyme A synthetase ACSM2B, mitochondrial [Homo sapiens].
Length = 577
Score = 108 bits (269), Expect = 2e-23
Identities = 77/246 (31%), Positives = 118/246 (47%), Gaps = 3/246 (1%)
Frame = +3
Query: 42 YSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIGLGNSKTPPP 221
Y + GE ETLE + + + + + QTETG +C+ + + P
Sbjct: 326 YKFPHLQNCLAGGESLLPETLENWRAQTGLDIREFYGQTETG----LTCM-VSKTMKIKP 380
Query: 222 GQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKL-PLPP-GAFSGLWKNQEAFKHLYFEK 395
G G + Y+V ++DD L G+I +++ P+ P G FSG +N +
Sbjct: 381 GYMGTAASCYDVQVIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVENPDKTAANIRGD 440
Query: 396 FPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVGKE 575
F + D G DE+GY M R DD+IN +G+RI +E +L+ H V + AV+
Sbjct: 441 F---WLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMKHPAVVETAVISSP 497
Query: 576 DPLKGHVPLALCVLRKD-INITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSGK 752
DP++G V A +L ++ Q+ +E+ QHV+ P RK FV LPKT +GK
Sbjct: 498 DPVRGEVVKAFVILASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGK 557
Query: 753 IPRAAL 770
I R L
Sbjct: 558 IQRTKL 563
>ref|NP_872423.3| acyl-coenzyme A synthetase ACSM2B, mitochondrial [Homo sapiens].
Length = 577
Score = 108 bits (269), Expect = 2e-23
Identities = 77/246 (31%), Positives = 118/246 (47%), Gaps = 3/246 (1%)
Frame = +3
Query: 42 YSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIGLGNSKTPPP 221
Y + GE ETLE + + + + + QTETG +C+ + + P
Sbjct: 326 YKFPHLQNCLAGGESLLPETLENWRAQTGLDIREFYGQTETG----LTCM-VSKTMKIKP 380
Query: 222 GQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKL-PLPP-GAFSGLWKNQEAFKHLYFEK 395
G G + Y+V ++DD L G+I +++ P+ P G FSG +N +
Sbjct: 381 GYMGTAASCYDVQVIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVENPDKTAANIRGD 440
Query: 396 FPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVGKE 575
F + D G DE+GY M R DD+IN +G+RI +E +L+ H V + AV+
Sbjct: 441 F---WLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMKHPAVVETAVISSP 497
Query: 576 DPLKGHVPLALCVLRKD-INITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSGK 752
DP++G V A +L ++ Q+ +E+ QHV+ P RK FV LPKT +GK
Sbjct: 498 DPVRGEVVKAFVILASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGK 557
Query: 753 IPRAAL 770
I R L
Sbjct: 558 IQRTKL 563
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,361,357
Number of extensions: 1683782
Number of successful extensions: 5084
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 5049
Number of HSP's successfully gapped: 20
Length of query: 524
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 417
Effective length of database: 14,770,016
Effective search space: 6159096672
Effective search space used: 6159096672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003506
(1573 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001136276.1| acyl-CoA synthetase short-chain family membe... 553 e-157
Alignment gi|NP_941038.2| acyl-CoA synthetase short-chain family member 3... 170 2e-42
Alignment gi|NP_062785.2| acetyl-coenzyme A synthetase, cytoplasmic [Mus ... 149 6e-36
Alignment gi|NP_542142.1| acetyl-coenzyme A synthetase 2-like, mitochondr... 142 9e-34
Alignment gi|NP_997607.2| acyl-coenzyme A synthetase ACSM3, mitochondrial... 119 5e-27
Alignment gi|NP_997606.2| acyl-coenzyme A synthetase ACSM3, mitochondrial... 119 5e-27
Alignment gi|NP_058566.3| acyl-coenzyme A synthetase ACSM3, mitochondrial... 119 5e-27
Alignment gi|NP_848501.1| acyl-coenzyme A synthetase ACSM4, mitochondrial... 114 2e-25
Alignment gi|NP_001171448.1| acyl-coenzyme A synthetase ACSM2, mitochondr... 106 4e-23
Alignment gi|NP_666309.1| acyl-coenzyme A synthetase ACSM2, mitochondrial... 106 4e-23
>ref|NP_001136276.1| acyl-CoA synthetase short-chain family member 3, mitochondrial
isoform 1 [Mus musculus].
Length = 682
Score = 553 bits (1425), Expect = e-157
Identities = 269/285 (94%), Positives = 278/285 (97%)
Frame = +3
Query: 12 QDSGAALGKQYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCI 191
QD GAALGKQYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCI
Sbjct: 398 QDPGAALGKQYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCI 457
Query: 192 GLGNSKTPPPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEA 371
GLGNSKTPPPGQAGK VPGYNVMILDDNMQKLKAR LGNIVVKLPLPPGAFSGLWKNQEA
Sbjct: 458 GLGNSKTPPPGQAGKCVPGYNVMILDDNMQKLKARSLGNIVVKLPLPPGAFSGLWKNQEA 517
Query: 372 FKHLYFEKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVA 551
FKHLYFEKFPGYYDTMDAGYMDEEGY+YVMSRVDDVINVAGHRISAGAIEES+LSHGTVA
Sbjct: 518 FKHLYFEKFPGYYDTMDAGYMDEEGYLYVMSRVDDVINVAGHRISAGAIEESVLSHGTVA 577
Query: 552 DCAVVGKEDPLKGHVPLALCVLRKDINITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQL 731
DCAVVGKEDPLKGHVPLALCVL+KD+N +E QVLEEIV+HVRQSIGPVAAFR AVFV+QL
Sbjct: 578 DCAVVGKEDPLKGHVPLALCVLKKDVNASEEQVLEEIVKHVRQSIGPVAAFRNAVFVKQL 637
Query: 732 PKTRSGKIPRAALSALVNGKPYKVTPTIEDPSIFGHIEEVLKQAL 866
PKTRSGKIPR+ LSALVNGKPYKVTPTIEDPSIFGHIEEVLKQA+
Sbjct: 638 PKTRSGKIPRSTLSALVNGKPYKVTPTIEDPSIFGHIEEVLKQAV 682
>ref|NP_941038.2| acyl-CoA synthetase short-chain family member 3, mitochondrial
isoform 2 [Mus musculus].
Length = 497
Score = 170 bits (431), Expect = 2e-42
Identities = 79/81 (97%), Positives = 79/81 (97%)
Frame = +3
Query: 12 QDSGAALGKQYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCI 191
QD GAALGKQYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCI
Sbjct: 398 QDPGAALGKQYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCI 457
Query: 192 GLGNSKTPPPGQAGKSVPGYN 254
GLGNSKTPPPGQAGK VPGYN
Sbjct: 458 GLGNSKTPPPGQAGKCVPGYN 478
>ref|NP_062785.2| acetyl-coenzyme A synthetase, cytoplasmic [Mus musculus].
Length = 701
Score = 149 bits (376), Expect = 6e-36
Identities = 94/272 (34%), Positives = 139/272 (51%), Gaps = 4/272 (1%)
Frame = +3
Query: 39 QYSLTRFKTLFVAGERCDVETLEWSKKVF---RVPVLDHWWQTETGSPITASCIGLGNSK 209
++S + L GE + E W +V R P++D +WQTETG + G K
Sbjct: 426 KHSRASLQVLGTVGEPINPEAWLWYHRVVGSQRCPIVDTFWQTETGGHMLTPLPGATPMK 485
Query: 210 TPPPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEAFKHLYF 389
PG A G IL+++ ++L+ G +V K P P G ++ N F+ YF
Sbjct: 486 ---PGSASFPFFGVAPAILNESGEELEGEAEGYLVFKQPWP-GIMRTVYGNHTRFETTYF 541
Query: 390 EKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVG 569
+KFPGYY T D D++GY ++ R+DD++NV+GH +S +E +L+ H VA+ AVVG
Sbjct: 542 KKFPGYYVTGDGCRRDQDGYYWITGRIDDMLNVSGHLLSTAEVESALVEHEAVAEAAVVG 601
Query: 570 KEDPLKGHVPLALCVLRKDINITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSG 749
P+KG L V D + + EE+ + +R+ IGP+A LPKTRSG
Sbjct: 602 HPHPVKGEC-LYCFVTLCDGHTFSPTLTEELKKQIREKIGPIATPDYIQNAPGLPKTRSG 660
Query: 750 KIPRAALSALV-NGKPYKVTPTIEDPSIFGHI 842
KI R L + N T T+ DPS+ H+
Sbjct: 661 KIMRRVLRKIAQNDHDLGDTSTVADPSVINHL 692
>ref|NP_542142.1| acetyl-coenzyme A synthetase 2-like, mitochondrial precursor [Mus
musculus].
Length = 682
Score = 142 bits (357), Expect = 9e-34
Identities = 92/282 (32%), Positives = 139/282 (49%), Gaps = 8/282 (2%)
Frame = +3
Query: 21 GAALGKQYSLTRFKTLFVAGERCDVETLEWSKKVF---RVPVLDHWWQTETGSPITASCI 191
G A K+Y + +TL GE + E EW KV R ++D WWQTETG CI
Sbjct: 391 GDAWVKKYDRSSLRTLGSVGEPINHEAWEWLHKVVGDGRCTLVDTWWQTETGG----ICI 446
Query: 192 GLGNSKTPP---PGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKN 362
S+ PG A + G +++D+ L+ + + PG ++ +
Sbjct: 447 APRPSEDGAEILPGMAMRPFFGIVPVLMDEKGNVLEGGDVSGALCISQAWPGMARTIYGD 506
Query: 363 QEAFKHLYFEKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHG 542
+ F YF +PGYY T D + E GY + R+DDVIN++GHR+ IE+++ H
Sbjct: 507 HQRFVDAYFRAYPGYYFTGDGAHRTEGGYYQITGRMDDVINISGHRLGTAEIEDAMADHP 566
Query: 543 TVADCAVVGKEDPLKGHVPLALCVLRKDINITEGQVLEEIVQHVRQSIGPVAAFRKAVFV 722
V + AV+G +KG A VL+ +I+ E V+ E+ V I A + + V
Sbjct: 567 AVPETAVIGYPHDIKGEAAFAFIVLKDNIS-DENMVVNELKLSVATKIAKYAVPDQILVV 625
Query: 723 QQLPKTRSGKIPRAALSALV--NGKPYKVTPTIEDPSIFGHI 842
++LPKTRSGK+ R L ++ G+ T T+EDPS+ I
Sbjct: 626 KRLPKTRSGKVMRRLLRKIITSRGQDLGDTTTLEDPSVITEI 667
>ref|NP_997607.2| acyl-coenzyme A synthetase ACSM3, mitochondrial [Mus musculus].
Length = 580
Score = 119 bits (299), Expect = 5e-27
Identities = 84/247 (34%), Positives = 129/247 (52%), Gaps = 4/247 (1%)
Frame = +3
Query: 42 YSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIGLGNSKTPP- 218
Y K AGE + E +E +K + + + + QTET + GN K
Sbjct: 335 YKFNSLKHCVSAGEPINPEVMEQWRKKTGLDIYEGYGQTET-------VLICGNFKGMKI 387
Query: 219 -PGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEAFKHLYFEK 395
PG GK P ++V ILD+N L G+I +++ LP F GL+ +
Sbjct: 388 KPGSMGKPSPAFDVKILDENGATLPPGQEGDIALQV-LPERPF-GLFTHYVDNPSKTAST 445
Query: 396 FPG-YYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVGK 572
G +Y T D GYMDE+GY + ++R DD+I +G+RI +E +L+ H ++A+ AVV
Sbjct: 446 LRGSFYITGDRGYMDEDGYFWFVARSDDIILSSGYRIGPFEVESALIEHPSIAESAVVSS 505
Query: 573 EDPLKGHVPLALCVLRKDI-NITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSG 749
DP++G V A VL D + + Q+ +EI +HV+++ P RK F+++LPKT SG
Sbjct: 506 PDPIRGEVVKAFIVLNPDYKSHDQEQLKKEIQEHVKKTTAPYKYPRKVEFIEELPKTVSG 565
Query: 750 KIPRAAL 770
K+ R L
Sbjct: 566 KVKRNEL 572
>ref|NP_997606.2| acyl-coenzyme A synthetase ACSM3, mitochondrial [Mus musculus].
Length = 580
Score = 119 bits (299), Expect = 5e-27
Identities = 84/247 (34%), Positives = 129/247 (52%), Gaps = 4/247 (1%)
Frame = +3
Query: 42 YSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIGLGNSKTPP- 218
Y K AGE + E +E +K + + + + QTET + GN K
Sbjct: 335 YKFNSLKHCVSAGEPINPEVMEQWRKKTGLDIYEGYGQTET-------VLICGNFKGMKI 387
Query: 219 -PGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEAFKHLYFEK 395
PG GK P ++V ILD+N L G+I +++ LP F GL+ +
Sbjct: 388 KPGSMGKPSPAFDVKILDENGATLPPGQEGDIALQV-LPERPF-GLFTHYVDNPSKTAST 445
Query: 396 FPG-YYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVGK 572
G +Y T D GYMDE+GY + ++R DD+I +G+RI +E +L+ H ++A+ AVV
Sbjct: 446 LRGSFYITGDRGYMDEDGYFWFVARSDDIILSSGYRIGPFEVESALIEHPSIAESAVVSS 505
Query: 573 EDPLKGHVPLALCVLRKDI-NITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSG 749
DP++G V A VL D + + Q+ +EI +HV+++ P RK F+++LPKT SG
Sbjct: 506 PDPIRGEVVKAFIVLNPDYKSHDQEQLKKEIQEHVKKTTAPYKYPRKVEFIEELPKTVSG 565
Query: 750 KIPRAAL 770
K+ R L
Sbjct: 566 KVKRNEL 572
>ref|NP_058566.3| acyl-coenzyme A synthetase ACSM3, mitochondrial [Mus musculus].
Length = 580
Score = 119 bits (299), Expect = 5e-27
Identities = 84/247 (34%), Positives = 129/247 (52%), Gaps = 4/247 (1%)
Frame = +3
Query: 42 YSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIGLGNSKTPP- 218
Y K AGE + E +E +K + + + + QTET + GN K
Sbjct: 335 YKFNSLKHCVSAGEPINPEVMEQWRKKTGLDIYEGYGQTET-------VLICGNFKGMKI 387
Query: 219 -PGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEAFKHLYFEK 395
PG GK P ++V ILD+N L G+I +++ LP F GL+ +
Sbjct: 388 KPGSMGKPSPAFDVKILDENGATLPPGQEGDIALQV-LPERPF-GLFTHYVDNPSKTAST 445
Query: 396 FPG-YYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVGK 572
G +Y T D GYMDE+GY + ++R DD+I +G+RI +E +L+ H ++A+ AVV
Sbjct: 446 LRGSFYITGDRGYMDEDGYFWFVARSDDIILSSGYRIGPFEVESALIEHPSIAESAVVSS 505
Query: 573 EDPLKGHVPLALCVLRKDI-NITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSG 749
DP++G V A VL D + + Q+ +EI +HV+++ P RK F+++LPKT SG
Sbjct: 506 PDPIRGEVVKAFIVLNPDYKSHDQEQLKKEIQEHVKKTTAPYKYPRKVEFIEELPKTVSG 565
Query: 750 KIPRAAL 770
K+ R L
Sbjct: 566 KVKRNEL 572
>ref|NP_848501.1| acyl-coenzyme A synthetase ACSM4, mitochondrial precursor [Mus
musculus].
Length = 580
Score = 114 bits (285), Expect = 2e-25
Identities = 86/248 (34%), Positives = 119/248 (47%), Gaps = 3/248 (1%)
Frame = +3
Query: 36 KQYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIGLGNSKTP 215
K+Y R + GE + E LE K + + + + QTE G I A+ G +
Sbjct: 333 KRYQFKRLRHCLTGGEPLNPEVLEQWKMQTGLELYEGYGQTEVGI-ICANRKG----EAI 387
Query: 216 PPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPL--PPGAFSGLWKNQEAFKHLYF 389
PG GK V Y+V I+D+N L + G I ++L P FS N E
Sbjct: 388 KPGSMGKGVVPYDVQIIDENGNILPSGKEGEIALRLKSDRPFCFFSEYVDNPEKTDATIR 447
Query: 390 EKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVG 569
F Y T D G MD++GY + + R DDVI +G+RI +E +L+ H V + AVV
Sbjct: 448 RNF---YVTGDRGVMDDDGYFWFVGRADDVIISSGYRIGPFEVESALIEHPAVVESAVVS 504
Query: 570 KEDPLKGHVPLALCVLRKDINITEGQVL-EEIVQHVRQSIGPVAAFRKAVFVQQLPKTRS 746
DP++G V A VL + + L E+ HV+ S P RK FVQ+LPKT +
Sbjct: 505 SPDPIRGEVVKAFIVLAAPYKCSNREKLTAELQDHVKNSTAPYKYPRKVEFVQELPKTIT 564
Query: 747 GKIPRAAL 770
GKI R L
Sbjct: 565 GKIKRNVL 572
>ref|NP_001171448.1| acyl-coenzyme A synthetase ACSM2, mitochondrial isoform 1 [Mus
musculus].
Length = 600
Score = 106 bits (265), Expect = 4e-23
Identities = 79/249 (31%), Positives = 120/249 (48%), Gaps = 4/249 (1%)
Frame = +3
Query: 42 YSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIGLGNSKTPPP 221
Y + F GE ETLE K + + + + QTETG S + P
Sbjct: 352 YKFPHLHSCFSGGETLLPETLENWKAKTGLEIREIYGQTETGLICRVS-----RTMKVKP 406
Query: 222 GQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKL-PL-PPGAFSGLWKNQEAFKHLYFEK 395
G G + Y+V ++D+ L G+I +++ P+ P G FSG N + + +
Sbjct: 407 GYLGTAFAHYDVQVIDEQGNVLPPGKEGDIAIRVKPIWPIGMFSGYVDNPKKTQ----DN 462
Query: 396 FPGYYDTM-DAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVGK 572
G + M D G D EGY + + R DD+IN +G+RI +E +L+ H V++ AV+
Sbjct: 463 IRGDFWLMGDRGIKDPEGYFHFIGRSDDIINSSGYRIGPSEVENALMEHPAVSETAVISS 522
Query: 573 EDPLKGHVPLALCVLRKD-INITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSG 749
DP +G V A VL + ++ Q+ + + +HV+ P RK FV LPKT +G
Sbjct: 523 PDPSRGEVVKAFVVLAPEFLSHDRDQLTKVLQEHVKSVTAPYKYPRKVEFVLDLPKTVTG 582
Query: 750 KIPRAALSA 776
KI RA L A
Sbjct: 583 KIERAKLRA 591
>ref|NP_666309.1| acyl-coenzyme A synthetase ACSM2, mitochondrial isoform 3 [Mus
musculus].
Length = 575
Score = 106 bits (265), Expect = 4e-23
Identities = 79/249 (31%), Positives = 120/249 (48%), Gaps = 4/249 (1%)
Frame = +3
Query: 42 YSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIGLGNSKTPPP 221
Y + F GE ETLE K + + + + QTETG S + P
Sbjct: 327 YKFPHLHSCFSGGETLLPETLENWKAKTGLEIREIYGQTETGLICRVS-----RTMKVKP 381
Query: 222 GQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKL-PL-PPGAFSGLWKNQEAFKHLYFEK 395
G G + Y+V ++D+ L G+I +++ P+ P G FSG N + + +
Sbjct: 382 GYLGTAFAHYDVQVIDEQGNVLPPGKEGDIAIRVKPIWPIGMFSGYVDNPKKTQ----DN 437
Query: 396 FPGYYDTM-DAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVGK 572
G + M D G D EGY + + R DD+IN +G+RI +E +L+ H V++ AV+
Sbjct: 438 IRGDFWLMGDRGIKDPEGYFHFIGRSDDIINSSGYRIGPSEVENALMEHPAVSETAVISS 497
Query: 573 EDPLKGHVPLALCVLRKD-INITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSG 749
DP +G V A VL + ++ Q+ + + +HV+ P RK FV LPKT +G
Sbjct: 498 PDPSRGEVVKAFVVLAPEFLSHDRDQLTKVLQEHVKSVTAPYKYPRKVEFVLDLPKTVTG 557
Query: 750 KIPRAALSA 776
KI RA L A
Sbjct: 558 KIERAKLRA 566
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 53,122,606
Number of extensions: 1426677
Number of successful extensions: 4478
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 4436
Number of HSP's successfully gapped: 15
Length of query: 524
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 418
Effective length of database: 12,433,743
Effective search space: 5197304574
Effective search space used: 5197304574
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003506
(1573 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126794.1| PREDICTED: acyl-CoA synthetase short-chain f... 226 4e-59
Alignment gi|NP_001137167.1| acetyl-coenzyme A synthetase, cytoplasmic [S... 152 4e-37
Alignment gi|XP_001927148.2| PREDICTED: acetyl-coenzyme A synthetase 2-li... 142 7e-34
Alignment gi|XP_003124609.2| PREDICTED: acyl-coenzyme A synthetase ACSM2B... 113 3e-25
Alignment gi|XP_003124616.2| PREDICTED: acyl-coenzyme A synthetase ACSM3,... 112 4e-25
Alignment gi|NP_001229951.1| acyl-CoA synthetase medium-chain family memb... 111 1e-24
Alignment gi|XP_003124611.2| PREDICTED: acyl-coenzyme A synthetase ACSM5,... 98 1e-20
Alignment gi|XP_003131621.2| PREDICTED: acyl-CoA synthetase family member... 54 3e-07
>ref|XP_003126794.1| PREDICTED: acyl-CoA synthetase short-chain family member 3,
mitochondrial-like [Sus scrofa].
Length = 130
Score = 226 bits (575), Expect = 4e-59
Identities = 114/114 (100%), Positives = 114/114 (100%)
Frame = +3
Query: 525 SLLSHGTVADCAVVGKEDPLKGHVPLALCVLRKDINITEGQVLEEIVQHVRQSIGPVAAF 704
SLLSHGTVADCAVVGKEDPLKGHVPLALCVLRKDINITEGQVLEEIVQHVRQSIGPVAAF
Sbjct: 17 SLLSHGTVADCAVVGKEDPLKGHVPLALCVLRKDINITEGQVLEEIVQHVRQSIGPVAAF 76
Query: 705 RKAVFVQQLPKTRSGKIPRAALSALVNGKPYKVTPTIEDPSIFGHIEEVLKQAL 866
RKAVFVQQLPKTRSGKIPRAALSALVNGKPYKVTPTIEDPSIFGHIEEVLKQAL
Sbjct: 77 RKAVFVQQLPKTRSGKIPRAALSALVNGKPYKVTPTIEDPSIFGHIEEVLKQAL 130
>ref|NP_001137167.1| acetyl-coenzyme A synthetase, cytoplasmic [Sus scrofa].
Length = 701
Score = 152 bits (385), Expect = 4e-37
Identities = 97/275 (35%), Positives = 141/275 (51%), Gaps = 4/275 (1%)
Frame = +3
Query: 18 SGAALGKQYSLTRFKTLFVAGERCDVETLEWSKKVF---RVPVLDHWWQTETGSPITASC 188
SG ++S K L GE + E W +V R P++D +WQTETG +
Sbjct: 419 SGDGPVTKHSRASLKVLGTVGEPINPEAWLWYHRVVGDNRCPIVDTFWQTETGGHMLTPL 478
Query: 189 IGLGNSKTPPPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQE 368
G +K PG A G IL++ ++L+ G +V K P P G ++ N E
Sbjct: 479 PGATRTK---PGSATFPFFGVAPAILNEAGEELEGEAEGYLVFKQPWP-GIMRTVYGNHE 534
Query: 369 AFKHLYFEKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTV 548
F+ YF+KFPGYY T D D++GY ++ R+DD++NV+GH +S +E +L+ H +
Sbjct: 535 RFEATYFKKFPGYYVTGDGCRRDKDGYYWITGRIDDMLNVSGHLLSTAEVESALVEHQAI 594
Query: 549 ADCAVVGKEDPLKGHVPLALCVLRKDINITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQ 728
A+ AVVG P+KG LR D +I + EE+ + +R+ IGP+A
Sbjct: 595 AEAAVVGHPHPVKGECLYCFVTLR-DGHIFSPTLTEELKKQIREKIGPIATPDFIQNAPG 653
Query: 729 LPKTRSGKIPRAALSALV-NGKPYKVTPTIEDPSI 830
LPKTRSGKI R L + N T T+ DPS+
Sbjct: 654 LPKTRSGKIMRRVLRKIAQNDHDLGDTSTVADPSV 688
>ref|XP_001927148.2| PREDICTED: acetyl-coenzyme A synthetase 2-like, mitochondrial-like
[Sus scrofa].
Length = 672
Score = 142 bits (357), Expect = 7e-34
Identities = 92/283 (32%), Positives = 142/283 (50%), Gaps = 14/283 (4%)
Frame = +3
Query: 36 KQYSLTRFKTLFVAGERCDVETLEWSKKVF---RVPVLDHWWQTETGSPITASCIGLGNS 206
K+Y + +TL GE + E EW +V R ++D WWQTETG CI
Sbjct: 387 KKYDRSSLRTLGSVGEPINHEAWEWLHQVVGDGRCTLVDTWWQTETGG----ICI----- 437
Query: 207 KTPPPGQAGKSV-------PGYNVM--ILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWK 359
+P P + G ++ P + ++ ++D+ + L+ + + PG ++
Sbjct: 438 -SPRPSEEGANILPCMAMRPLFGIVPVLMDEKGKVLEGGDVSGALCLSQAWPGMARTIYG 496
Query: 360 NQEAFKHLYFEKFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSH 539
+ + F YF+ FPGYY T D Y EEGY + R+DDVIN++GHR+ IE+++ H
Sbjct: 497 DHQRFIDAYFKAFPGYYFTGDGAYRTEEGYYQITGRMDDVINISGHRLGTAEIEDAMADH 556
Query: 540 GTVADCAVVGKEDPLKGHVPLALCVLRKDINITEGQVLEEIVQHVRQSIGPVAAFRKAVF 719
V + AV+G +KG A VL KD V++E+ V I A + +
Sbjct: 557 PAVPETAVIGYPHDIKGEAAFAFIVL-KDGTGDVDVVVKELRSVVADKIAKYAVPDQVLV 615
Query: 720 VQQLPKTRSGKIPRAALSALVNGKPYKV--TPTIEDPSIFGHI 842
V++LPKTRSGK+ R L +V G+ + T T+EDPS+ I
Sbjct: 616 VKRLPKTRSGKVMRRLLRKIVTGQAQDLGDTTTLEDPSVISEI 658
>ref|XP_003124609.2| PREDICTED: acyl-coenzyme A synthetase ACSM2B, mitochondrial [Sus
scrofa].
Length = 587
Score = 113 bits (282), Expect = 3e-25
Identities = 80/247 (32%), Positives = 119/247 (48%), Gaps = 4/247 (1%)
Frame = +3
Query: 42 YSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIGLGNSKTPPP 221
Y K F GE +TLE + + + + + QTETG S + P
Sbjct: 336 YKFPHLKYCFTGGETLLPDTLENWRAQTGLDLREFYGQTETGLTCRVS-----KTMKVKP 390
Query: 222 GQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKL-PLPP-GAFSGLWKNQEAFKHLYFEK 395
G G ++P Y+V ++DD L G + +++ P+ P G FSG N E
Sbjct: 391 GHLGTAIPHYDVQVIDDKGNVLPPGTEGELGIRVKPIRPVGFFSGYVDNLEKT----IAN 446
Query: 396 FPG-YYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVGK 572
G ++ T D G D++GY + R DD+IN +G+RI +E +L+ H V + AV+
Sbjct: 447 IRGDFWLTGDRGIKDQDGYFQFLGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISS 506
Query: 573 EDPLKGHVPLALCVLRKD-INITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSG 749
DP++G V A VL ++ Q+ +E+ QHV+ P RK FV LPKT +G
Sbjct: 507 PDPIRGEVVKAFVVLDPQFLSHDLDQLTKELQQHVKLVTAPYKYPRKIEFVLDLPKTVTG 566
Query: 750 KIPRAAL 770
KI RA L
Sbjct: 567 KIQRAKL 573
>ref|XP_003124616.2| PREDICTED: acyl-coenzyme A synthetase ACSM3, mitochondrial-like [Sus
scrofa].
Length = 581
Score = 112 bits (281), Expect = 4e-25
Identities = 84/247 (34%), Positives = 125/247 (50%), Gaps = 8/247 (3%)
Frame = +3
Query: 54 RFKTL---FVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIGLGNSKTPP-- 218
+FK+L AGE + E E + + + + + + QTET + GN K
Sbjct: 337 KFKSLKHCVSAGEPINPEVTEQWRNLTGLDIYEGYGQTET-------VLICGNFKGMKIK 389
Query: 219 PGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLP--LPPGAFSGLWKNQEAFKHLYFE 392
PG GK P ++V ILD N L G+I +++ P G F+ N
Sbjct: 390 PGSMGKPSPAFDVKILDVNGNVLPPGQEGDIGIRVSPNRPFGLFTHYIDNPTKTASTLRG 449
Query: 393 KFPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVGK 572
F Y T D GYMDE+GY + ++R DD+I +G+RI +E +L+ H V + AV+
Sbjct: 450 DF---YITGDRGYMDEDGYFWFVARSDDIILSSGYRIGPSEVENALIEHPAVEESAVISS 506
Query: 573 EDPLKGHVPLALCVLRKDI-NITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSG 749
DP++G V A VL D + + Q+ +EI +HV+++ P RK F+Q+LPKT SG
Sbjct: 507 PDPVRGEVVKAFIVLNPDYKSHDQEQLKKEIQEHVKRTTAPYKYPRKIEFIQELPKTISG 566
Query: 750 KIPRAAL 770
KI R L
Sbjct: 567 KIKRNEL 573
>ref|NP_001229951.1| acyl-CoA synthetase medium-chain family member 4 [Sus scrofa].
Length = 580
Score = 111 bits (277), Expect = 1e-24
Identities = 84/246 (34%), Positives = 118/246 (47%), Gaps = 1/246 (0%)
Frame = +3
Query: 36 KQYSLTRFKTLFVAGERCDVETLEWSKKVFRVPVLDHWWQTETGSPITASCIGLGNSKTP 215
++Y K GE + E LE + + + + + QTE G I AS G +
Sbjct: 333 RRYKFKSLKHCLTGGEPLNPEVLEQWRAQTGLNLYEGYGQTEVGL-ICASYKG----QEI 387
Query: 216 PPGQAGKSVPGYNVMILDDNMQKLKARCLGNIVVKLPLPPGAFSGLWKNQEAFKHLYFEK 395
PG G P ++V I+D+N L G I ++L P FS K + +
Sbjct: 388 KPGSMGIRAPPHDVQIIDENGDVLPPGKEGEISIRLT-PTRHFSLFSKYVDNPEKTAATI 446
Query: 396 FPGYYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVGKE 575
G+Y T D G MD +GY + R DDVI AG+RI +E +L+ H VA+ AVV
Sbjct: 447 RGGFYVTGDRGVMDSDGYFRFVGRADDVIISAGYRIGPFEVESALIEHPAVAESAVVSSP 506
Query: 576 DPLKGHVPLALCVLRKDINITEGQVLE-EIVQHVRQSIGPVAAFRKAVFVQQLPKTRSGK 752
DP++G V A VL + + L E+ HV++S P RK FVQ+LPKT +GK
Sbjct: 507 DPIRGEVVKAFVVLSAPFKSSNPEQLTLELQDHVKKSTAPYKYPRKVEFVQELPKTVTGK 566
Query: 753 IPRAAL 770
I R L
Sbjct: 567 IKRNIL 572
>ref|XP_003124611.2| PREDICTED: acyl-coenzyme A synthetase ACSM5, mitochondrial [Sus
scrofa].
Length = 440
Score = 97.8 bits (242), Expect = 1e-20
Identities = 72/220 (32%), Positives = 107/220 (48%), Gaps = 13/220 (5%)
Frame = +3
Query: 150 WQTETGSPITASCIGLGNSKTP-----------PPGQAGKSVPGYNVMILDDNMQKLKAR 296
W+++TG + G G S+T G G++ P Y V I+DD L
Sbjct: 219 WKSQTGLELHE---GYGQSETVVICANPKGSKIKAGSMGQASPPYEVQIVDDEGNVLPPG 275
Query: 297 CLGNIVVKL-PLPPGAFSGLWKNQEAFKHLYFEKFPGYYDTMDAGYMDEEGYVYVMSRVD 473
GNI +++ P P F + + K E+ +Y T D ++D++GY + M R D
Sbjct: 276 EEGNIAIRVRPARPFCFFRCYLDNPE-KTAASER-GDFYITGDRAHIDKDGYFWFMGRND 333
Query: 474 DVINVAGHRISAGAIEESLLSHGTVADCAVVGKEDPLKGHVPLALCVLRKDINITEGQVL 653
DVIN + +RI +E +L H V + AVV DP++G V A VL + + L
Sbjct: 334 DVINSSSYRIGPVEVESALAEHPAVLEAAVVSSPDPIRGEVVKAFIVLSPAYTSHDPKKL 393
Query: 654 E-EIVQHVRQSIGPVAAFRKAVFVQQLPKTRSGKIPRAAL 770
E+ +HV++ P RK FV +LPKT SGKI R+ L
Sbjct: 394 TWELQEHVKRVTAPYKYPRKVAFVSELPKTVSGKIQRSKL 433
>ref|XP_003131621.2| PREDICTED: acyl-CoA synthetase family member 2, mitochondrial-like
[Sus scrofa].
Length = 197
Score = 53.5 bits (127), Expect = 3e-07
Identities = 39/122 (31%), Positives = 53/122 (43%)
Frame = +3
Query: 405 YYDTMDAGYMDEEGYVYVMSRVDDVINVAGHRISAGAIEESLLSHGTVADCAVVGKEDPL 584
+Y T D MDE+G+ ++ R D+I G I +E+ +H V D VVG +D
Sbjct: 70 WYRTGDIAVMDEQGFCRIVGRAKDMIIRGGENIYPAELEDFFHTHPQVQDVQVVGVKDNR 129
Query: 585 KGHVPLALCVLRKDINITEGQVLEEIVQHVRQSIGPVAAFRKAVFVQQLPKTRSGKIPRA 764
G A L+K E EEI + I R VFV P T SGK+ +
Sbjct: 130 MGEEICACIRLKKG----EKTTAEEIKAFCKGKISHFKIPRYIVFVTDYPLTVSGKVQKF 185
Query: 765 AL 770
L
Sbjct: 186 KL 187
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,161,708
Number of extensions: 1059675
Number of successful extensions: 3366
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3348
Number of HSP's successfully gapped: 8
Length of query: 524
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 420
Effective length of database: 8,754,644
Effective search space: 3676950480
Effective search space used: 3676950480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003506
(1573 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 1356 0.0
Sscrofa_Chr14 143 3e-31
>Sscrofa_Chr05
|| Length = 111506441
Score = 1356 bits (684), Expect = 0.0
Identities = 746/775 (96%)
Strand = Plus / Plus
Query: 799 aggtgactcctacgatcgaagaccccagcatttttgggcacatagaagaagtgctgaaac 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105218146 aggtgactcctacgatcgaagaccccagcatttttgggcacatagaagaagtgctgaaac 105218205
Query: 859 aggcattgtgaccttttgtttctccnnnnnnngaatcccgtttctaattggagccaagtt 918
||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 105218206 aggcattgtgaccttttgtttctcctttttttgaatcccgtttctaattggagccaagtt 105218265
Query: 919 ttggaattctttcccagagataatttacatgcagactgaaatgtgaatcataaagacctg 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105218266 ttggaattctttcccagagataatttacatgcagactgaaatgtgaatcataaagacctg 105218325
Query: 979 tgccttctgtttgatcagcccaattagcactcttacccgttgctgctagggtatctcatt 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105218326 tgccttctgtttgatcagcccaattagcactcttacccgttgctgctagggtatctcatt 105218385
Query: 1039 atgggtttgccagcacttcagtttaagaaaaatatatctaaggcatgatttttcaaactg 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105218386 atgggtttgccagcacttcagtttaagaaaaatatatctaaggcatgatttttcaaactg 105218445
Query: 1099 gtacccactnnnnnnnnnnnnnnnnnnccactttgactgaaagtgacactaatatcaagc 1158
||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 105218446 gtacccactaaaaaagaaaaaacaaaaccactttgactgaaagtgacactaatatcaagc 105218505
Query: 1159 cacttccttaaaggggggctctgcagctttgaccccaaacctaaaacccaagttgacgtc 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105218506 cacttccttaaaggggggctctgcagctttgaccccaaacctaaaacccaagttgacgtc 105218565
Query: 1219 agaaaatagttacccctttcttggagaaattctgagtattttctaatattcttgagatgc 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105218566 agaaaatagttacccctttcttggagaaattctgagtattttctaatattcttgagatgc 105218625
Query: 1279 ccgcatgcttggttattttaaatgaaagtgctgtgatacaaagttttaggttgtcatcta 1338
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 105218626 ccacatgcttggttattttaaatgaaagagctgtgatacaaagttttaggttgtcatcta 105218685
Query: 1339 gacatgcttttggtaggagaatctgtctggttatcagtccccttcctgaggggagggctg 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105218686 gacatgcttttggtaggagaatctgtctggttatcagtccccttcctgaggggagggctg 105218745
Query: 1399 ggtagcgggtatcgtgcctggtgctcagtcaagggaaatagacccagaggcgggttcatc 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105218746 ggtagcgggtatcgtgcctggtgctcagtcaagggaaatagacccagaggcgggttcatc 105218805
Query: 1459 ctctttcttcgtcctgaagatgaaggctctttggagcccctcctcctatcgggttcttaa 1518
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105218806 ctctttcttcgtcctggagatgaaggctctttggagcccctcctcctatcgggttcttag 105218865
Query: 1519 ctgtctgtgtatttctgagtgattcagcttcttttggagaaaaggcaatgatgta 1573
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105218866 ctgtctgtgtatttctgagtgattcagcttcttttggagaaaaggcaatgatgta 105218920
Score = 1332 bits (672), Expect = 0.0
Identities = 743/775 (95%)
Strand = Plus / Minus
Query: 799 aggtgactcctacgatcgaagaccccagcatttttgggcacatagaagaagtgctgaaac 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105197712 aggtgactcctacgatcgaagaccccagcatttttgggcacatagaagaagtgctgaaac 105197653
Query: 859 aggcattgtgaccttttgtttctccnnnnnnngaatcccgtttctaattggagccaagtt 918
||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 105197652 aggcattgtgaccttttgtttctcctttttttgaatcccgtttctaattggagccaagtt 105197593
Query: 919 ttggaattctttcccagagataatttacatgcagactgaaatgtgaatcataaagacctg 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105197592 ttggaattctttcccagagataatttacatgcagactgaaatgtgaatcataaagacctg 105197533
Query: 979 tgccttctgtttgatcagcccaattagcactcttacccgttgctgctagggtatctcatt 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105197532 tgccttctgtttgatcagcccaattagcactcttacccgttgctgctagggtatctcatt 105197473
Query: 1039 atgggtttgccagcacttcagtttaagaaaaatatatctaaggcatgatttttcaaactg 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105197472 atgggtttgccagcacttcagtttaagaaaaatatatctaaggcatgatttttcaaactg 105197413
Query: 1099 gtacccactnnnnnnnnnnnnnnnnnnccactttgactgaaagtgacactaatatcaagc 1158
||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 105197412 gtacccactaaaaaagaaaaaacaaaaccactttgactgaaagtgacactaatatcaagc 105197353
Query: 1159 cacttccttaaaggggggctctgcagctttgaccccaaacctaaaacccaagttgacgtc 1218
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 105197352 cacttccttaaaggggggctctgcagctttgacaccaaacctaaaacccaagttgacgtc 105197293
Query: 1219 agaaaatagttacccctttcttggagaaattctgagtattttctaatattcttgagatgc 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105197292 agaaaatagttacccctttcttggagaaattctgagtattttctaatattcttgagatgc 105197233
Query: 1279 ccgcatgcttggttattttaaatgaaagtgctgtgatacaaagttttaggttgtcatcta 1338
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 105197232 ccgcatgcttggttattttaaatgaaagagctgtgatacaaagttttaggttgtcatcta 105197173
Query: 1339 gacatgcttttggtaggagaatctgtctggttatcagtccccttcctgaggggagggctg 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105197172 gacatgcttttggtaggagaatctgtctggttatcagtccccttcctgaggggagggctg 105197113
Query: 1399 ggtagcgggtatcgtgcctggtgctcagtcaagggaaatagacccagaggcgggttcatc 1458
|||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 105197112 ggtagcgggtgtcgtgcctggtgctcagtcaagggaaatagatccagaggcaggttcatc 105197053
Query: 1459 ctctttcttcgtcctgaagatgaaggctctttggagcccctcctcctatcgggttcttaa 1518
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105197052 ctctttcttcgtcctggagatgaaggctctttggagcccctcctcctatcgggttcttag 105196993
Query: 1519 ctgtctgtgtatttctgagtgattcagcttcttttggagaaaaggcaatgatgta 1573
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105196992 ctgtctgtgtatttctgagtgattcagcttcttttggagaaaaggcaatgatgta 105196938
Score = 357 bits (180), Expect = 1e-95
Identities = 180/180 (100%)
Strand = Plus / Minus
Query: 623 agacataaacataacagagggacaagttttagaagaaattgtgcaacatgtcagacagag 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105198744 agacataaacataacagagggacaagttttagaagaaattgtgcaacatgtcagacagag 105198685
Query: 683 cattggccccgtggctgcttttcggaaagctgtgtttgttcaacagttgcccaaaacccg 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105198684 cattggccccgtggctgcttttcggaaagctgtgtttgttcaacagttgcccaaaacccg 105198625
Query: 743 atctggcaaaattccccgcgccgccctgtccgccctcgtcaacggcaagccgtacaaggt 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105198624 atctggcaaaattccccgcgccgccctgtccgccctcgtcaacggcaagccgtacaaggt 105198565
Score = 357 bits (180), Expect = 1e-95
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 623 agacataaacataacagagggacaagttttagaagaaattgtgcaacatgtcagacagag 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105217111 agacataaacataacagagggacaagttttagaagaaattgtgcaacatgtcagacagag 105217170
Query: 683 cattggccccgtggctgcttttcggaaagctgtgtttgttcaacagttgcccaaaacccg 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105217171 cattggccccgtggctgcttttcggaaagctgtgtttgttcaacagttgcccaaaacccg 105217230
Query: 743 atctggcaaaattccccgcgccgccctgtccgccctcgtcaacggcaagccgtacaaggt 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105217231 atctggcaaaattccccgcgccgccctgtccgccctcgtcaacggcaagccgtacaaggt 105217290
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 402 ggctactatgacaccatggatgctggttacatggatgaagaaggctatgtgtatgttatg 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105210188 ggctactatgacaccatggatgctggttacatggatgaagaaggctatgtgtatgttatg 105210129
Query: 462 tctcgtgttgacgacgtgataaatgttgcaggtcacaggatttctgcaggtgccattgaa 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105210128 tctcgtgttgacgacgtgataaatgttgcaggtcacaggatttctgcaggtgccattgaa 105210069
Query: 522 gag 524
|||
Sbjct: 105210068 gag 105210066
Score = 202 bits (102), Expect = 4e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 523 agtctctcctttcccatggcaccgtggcggactgtgctgtcgtgggcaaggaggatcctt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105198929 agtctctcctttcccatggcaccgtggcggactgtgctgtcgtgggcaaggaggatcctt 105198870
Query: 583 tgaaaggccatgtgccactagccctctgcgtgttgagaaaag 624
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105198869 tgaaaggccatgtgccactagccctctgcgtgttgagaaaag 105198828
Score = 202 bits (102), Expect = 4e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 523 agtctctcctttcccatggcaccgtggcggactgtgctgtcgtgggcaaggaggatcctt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105216926 agtctctcctttcccatggcaccgtggcggactgtgctgtcgtgggcaaggaggatcctt 105216985
Query: 583 tgaaaggccatgtgccactagccctctgcgtgttgagaaaag 624
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105216986 tgaaaggccatgtgccactagccctctgcgtgttgagaaaag 105217027
Score = 202 bits (102), Expect = 4e-49
Identities = 105/106 (99%)
Strand = Plus / Minus
Query: 54 aggttcaaaacattatttgtggctggagaacgatgtgacgtggagaccctggagtggtcc 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105265165 aggttcaaaacattatttgtggctggagaacgatgtgacgtggagaccctggagtggtcc 105265106
Query: 114 aaaaaggtcttccgagtccccgtcctagaccattggtggcaaactg 159
|||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 105265105 aaaaaggtcttccgagtccccgtcctagaccactggtggcaaactg 105265060
Score = 192 bits (97), Expect = 4e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 159 gagactggatccccaattacagcatcctgcattggattaggtaactccaaaacgcctcct 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105250421 gagactggatccccaattacagcatcctgcattggattaggtaactccaaaacgcctcct 105250362
Query: 219 ccagggcaagcaggaaaaagtgttccaggatacaacg 255
|||||||||||||||||||||||||||||||||||||
Sbjct: 105250361 ccagggcaagcaggaaaaagtgttccaggatacaacg 105250325
Score = 167 bits (84), Expect = 2e-38
Identities = 87/88 (98%)
Strand = Plus / Minus
Query: 315 gtaaagttgccattaccacctggagcgttttcaggactctggaagaatcaggaagcattc 374
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105213011 gtaaggttgccattaccacctggagcgttttcaggactctggaagaatcaggaagcattc 105212952
Query: 375 aagcatttatactttgaaaaatttcctg 402
||||||||||||||||||||||||||||
Sbjct: 105212951 aagcatttatactttgaaaaatttcctg 105212924
Score = 133 bits (67), Expect = 3e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 255 gttatgattttggatgacaacatgcaaaaactgaaggcgcggtgtttaggaaatatcgtg 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105247327 gttatgattttggatgacaacatgcaaaaactgaaggcgcggtgtttaggaaatatcgtg 105247268
Query: 315 gtaaagt 321
|||||||
Sbjct: 105247267 gtaaagt 105247261
Score = 77.8 bits (39), Expect = 2e-11
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 11 acaggactccggggccgccttggggaagcagtactctttgacaaggt 57
||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 105276920 acaggaccctggggccgccttggggaagcagtactctttgacaaggt 105276874
>Sscrofa_Chr14
|| Length = 153851969
Score = 143 bits (72), Expect = 3e-31
Identities = 99/108 (91%)
Strand = Plus / Plus
Query: 970 aaagacctgtgccttctgtttgatcagcccaattagcactcttacccgttgctgctaggg 1029
|||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| |||
Sbjct: 131495245 aaagacctgtgccttctgtttgattagcccaattagcactattaccagttgctggtagca 131495304
Query: 1030 tatctcattatgggtttgccagcacttcagtttaagaaaaatatatct 1077
| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 131495305 aagctcattgtgggtttgccagcacttcagtttaagaaaaatatatct 131495352
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 49,539,112
Number of extensions: 364
Number of successful extensions: 364
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 15
Length of query: 1573
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1551
Effective length of database: 2,808,408,574
Effective search space: 4355841698274
Effective search space used: 4355841698274
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)