Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003507
(1118 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069256.1| DNA damage-binding protein 2 [Bos taurus]. 543 e-154
>ref|NP_001069256.1| DNA damage-binding protein 2 [Bos taurus].
Length = 426
Score = 543 bits (1398), Expect = e-154
Identities = 262/298 (87%), Positives = 275/298 (92%)
Frame = +3
Query: 225 MAPRKRPETQKTPEVVLRPKSKRNRSPRELEPEAKKLCLKGPGSSRRSDSGCLWAGLASL 404
MAPRKRPE QKTPEVV+RPKSKRNRSPRELEPEAKKLC+KGPGSSRR DSG LWAGLASL
Sbjct: 1 MAPRKRPENQKTPEVVVRPKSKRNRSPRELEPEAKKLCVKGPGSSRRFDSG-LWAGLASL 59
Query: 405 RVPAPCSSIIRALHHYKLGRTSWPSLQQGLQQSFLHTLASYRIFQKAAPFDRRATSLAWH 584
RVP CSSI+RALH +KLG +WPSLQQGLQQSFL++LASYRIFQKAAPFDRRATSLAWH
Sbjct: 60 RVPPLCSSIVRALHQHKLGTAAWPSLQQGLQQSFLNSLASYRIFQKAAPFDRRATSLAWH 119
Query: 585 PTHPRILAVGSKGGDILLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNANQFFTSSMEGT 764
PTHP LAVGSKGGDILLWNFGIKDKPTFIKGIGAGGSITG+KFNPLN NQFFTSSMEGT
Sbjct: 120 PTHPSTLAVGSKGGDILLWNFGIKDKPTFIKGIGAGGSITGMKFNPLNTNQFFTSSMEGT 179
Query: 765 TRLQDFKGNTLRVFASSGTCNIWFCSLDXXXXXXXXXTGDNVGHVILLNLDGKELWNLRM 944
TRLQDFKGNTLRVFASS TCN+WFCSLD TGDNVGHVILLN+DG+ELWNLRM
Sbjct: 180 TRLQDFKGNTLRVFASSDTCNVWFCSLDVSVKSRVVVTGDNVGHVILLNMDGRELWNLRM 239
Query: 945 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKTSFLYSLPHRHPVNAALFSP 1118
HKKKVTHVALNPCCDW LATASVDQTVKIWDLRQVRGK+SFL+SLPHRHPVNAA FSP
Sbjct: 240 HKKKVTHVALNPCCDWLLATASVDQTVKIWDLRQVRGKSSFLHSLPHRHPVNAAHFSP 297
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,848,379
Number of extensions: 1617005
Number of successful extensions: 7172
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7109
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,240,222
Effective search space: 3816379496
Effective search space used: 3816379496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003507
(1118 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540746.2| PREDICTED: similar to DNA damage binding protei... 553 e-157
>ref|XP_540746.2| PREDICTED: similar to DNA damage binding protein 2 (Damage-specific
DNA binding protein 2) (DDB p48 subunit) (DDBb)
(UV-damaged DNA-binding protein 2) (UV-DDB 2) [Canis
familiaris].
Length = 413
Score = 553 bits (1425), Expect = e-157
Identities = 261/298 (87%), Positives = 277/298 (92%)
Frame = +3
Query: 225 MAPRKRPETQKTPEVVLRPKSKRNRSPRELEPEAKKLCLKGPGSSRRSDSGCLWAGLASL 404
MAPRKRPETQKTPEV +RPKSKR+RSPRELEPEAKKLC+KGPGSSRR DSGCLWAGLASL
Sbjct: 1 MAPRKRPETQKTPEVAVRPKSKRSRSPRELEPEAKKLCVKGPGSSRRFDSGCLWAGLASL 60
Query: 405 RVPAPCSSIIRALHHYKLGRTSWPSLQQGLQQSFLHTLASYRIFQKAAPFDRRATSLAWH 584
+VP CSSI+RALHH+KLG+ +WPSLQQGLQQSFLH+LASYRIFQKAAPFDRRATSLAWH
Sbjct: 61 QVPPSCSSIVRALHHHKLGKAAWPSLQQGLQQSFLHSLASYRIFQKAAPFDRRATSLAWH 120
Query: 585 PTHPRILAVGSKGGDILLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNANQFFTSSMEGT 764
PTHP LAVGSKGGDI+LWNFG+KDKPTFIKGIGAGGSITGLKFNPL+ NQFFTSSMEGT
Sbjct: 121 PTHPSTLAVGSKGGDIMLWNFGMKDKPTFIKGIGAGGSITGLKFNPLDTNQFFTSSMEGT 180
Query: 765 TRLQDFKGNTLRVFASSGTCNIWFCSLDXXXXXXXXXTGDNVGHVILLNLDGKELWNLRM 944
TRLQDFKGNTLRVF SSGTCN WFCSLD TGDNVGHVILLN+DG+ELWNLRM
Sbjct: 181 TRLQDFKGNTLRVFTSSGTCNFWFCSLDVSARSRMVVTGDNVGHVILLNMDGRELWNLRM 240
Query: 945 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKTSFLYSLPHRHPVNAALFSP 1118
HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK+SFL+SLPH HPVNAA FSP
Sbjct: 241 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKSSFLHSLPHSHPVNAACFSP 298
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,927,779
Number of extensions: 1661869
Number of successful extensions: 7762
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7683
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 268
Effective length of database: 15,407,560
Effective search space: 4129226080
Effective search space used: 4129226080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003507
(1118 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000098.1| DNA damage-binding protein 2 [Homo sapiens]. 518 e-147
>ref|NP_000098.1| DNA damage-binding protein 2 [Homo sapiens].
Length = 427
Score = 518 bits (1334), Expect = e-147
Identities = 247/298 (82%), Positives = 262/298 (87%)
Frame = +3
Query: 225 MAPRKRPETQKTPEVVLRPKSKRNRSPRELEPEAKKLCLKGPGSSRRSDSGCLWAGLASL 404
MAP+KRPETQKT E+VLRP++KR+RSP ELEPEAKKLC KG G SRR DS CLW GLA
Sbjct: 1 MAPKKRPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGP 60
Query: 405 RVPAPCSSIIRALHHYKLGRTSWPSLQQGLQQSFLHTLASYRIFQKAAPFDRRATSLAWH 584
++ PC SI+R LH +KLGR SWPS+QQGLQQSFLHTL SYRI QKAAPFDRRATSLAWH
Sbjct: 61 QILPPCRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWH 120
Query: 585 PTHPRILAVGSKGGDILLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNANQFFTSSMEGT 764
PTHP +AVGSKGGDI+LWNFGIKDKPTFIKGIGAGGSITGLKFNPLN NQF+ SSMEGT
Sbjct: 121 PTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 180
Query: 765 TRLQDFKGNTLRVFASSGTCNIWFCSLDXXXXXXXXXTGDNVGHVILLNLDGKELWNLRM 944
TRLQDFKGN LRVFASS T NIWFCSLD TGDNVG+VILLN+DGKELWNLRM
Sbjct: 181 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRM 240
Query: 945 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKTSFLYSLPHRHPVNAALFSP 1118
HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK SFLYSLPHRHPVNAA FSP
Sbjct: 241 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP 298
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,921,986
Number of extensions: 1627207
Number of successful extensions: 7120
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7045
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,868,908
Effective search space: 3984867344
Effective search space used: 3984867344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003507
(1118 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082395.2| DNA damage-binding protein 2 [Mus musculus]. 465 e-131
Alignment gi|NP_084510.2| WD repeat-containing protein 76 [Mus musculus]. 50 4e-06
>ref|NP_082395.2| DNA damage-binding protein 2 [Mus musculus].
Length = 432
Score = 465 bits (1197), Expect = e-131
Identities = 219/298 (73%), Positives = 253/298 (84%)
Frame = +3
Query: 225 MAPRKRPETQKTPEVVLRPKSKRNRSPRELEPEAKKLCLKGPGSSRRSDSGCLWAGLASL 404
MAP+K PETQK+P+V + +SK R P+ELEPEAKKL ++GP SSR +S CL A L+SL
Sbjct: 1 MAPKKCPETQKSPDVAVLLRSKSRRGPQELEPEAKKLRVQGPVSSRTCESCCLLAELSSL 60
Query: 405 RVPAPCSSIIRALHHYKLGRTSWPSLQQGLQQSFLHTLASYRIFQKAAPFDRRATSLAWH 584
++P+ SSI+R L+ +KLG+ +W SLQQGLQ+SFLH+LASY++F+KAAPFDRR TSLAWH
Sbjct: 61 QIPSRSSSIVRDLYQHKLGKATWSSLQQGLQKSFLHSLASYQVFRKAAPFDRRTTSLAWH 120
Query: 585 PTHPRILAVGSKGGDILLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNANQFFTSSMEGT 764
PTHP LAVGSKGGDI++WNFGIKDKP F+KGIGAGGSITGLKFN LN NQFF SSMEGT
Sbjct: 121 PTHPSTLAVGSKGGDIMIWNFGIKDKPIFLKGIGAGGSITGLKFNHLNTNQFFASSMEGT 180
Query: 765 TRLQDFKGNTLRVFASSGTCNIWFCSLDXXXXXXXXXTGDNVGHVILLNLDGKELWNLRM 944
TRLQDFKGN LRV+ SS +C +WFCSLD TGDN+GHVILL+ DGKELWNLRM
Sbjct: 181 TRLQDFKGNILRVYTSSNSCKVWFCSLDVSAKSRVVVTGDNMGHVILLSTDGKELWNLRM 240
Query: 945 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKTSFLYSLPHRHPVNAALFSP 1118
HKKKV HVALNPCCDW LATAS+DQTVKIWDLRQ++GK SFLYSLPHRHPVNAA FSP
Sbjct: 241 HKKKVAHVALNPCCDWLLATASIDQTVKIWDLRQIKGKDSFLYSLPHRHPVNAACFSP 298
>ref|NP_084510.2| WD repeat-containing protein 76 [Mus musculus].
Length = 524
Score = 49.7 bits (117), Expect = 4e-06
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 9/193 (4%)
Frame = +3
Query: 567 TSLAWHPTHPRIL-AVGSKGGDILLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNANQFF 743
+S+A HP+ R L A G+K G I LW+ + + ++ L F+P N
Sbjct: 218 SSVALHPSEVRTLVAAGAKSGQIGLWDLTQQSEDAMYVFYAHSRYVSCLSFSPTNPAHLL 277
Query: 744 TSSMEGTTRLQDFKGNTL-RVFASSGTCNIWFCSLDXXXXXXXXXTGDNVGHVILLN--- 911
+ S +GT R DF V+ + G S D G GH+ L++
Sbjct: 278 SLSYDGTLRCGDFSSAVFEEVYRNEGNSP---SSFDFLNDSSSLLVGHWDGHLSLVDRRT 334
Query: 912 --LDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR--QVRGKTSFLYSL 1079
++ +N + K + HV +P + TA + + V ++D R + RG +
Sbjct: 335 PGTSYEKFFNSSLEKIRTVHV--HPLSRQYFVTAGL-RDVHVYDARFLKSRGSQPLISLT 391
Query: 1080 PHRHPVNAALFSP 1118
H + +A FSP
Sbjct: 392 EHSKSIASAYFSP 404
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,776,301
Number of extensions: 1353593
Number of successful extensions: 5975
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5910
Number of HSP's successfully gapped: 2
Length of query: 372
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 269
Effective length of database: 12,523,851
Effective search space: 3368915919
Effective search space used: 3368915919
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003507
(1118 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361173.1| PREDICTED: DNA damage-binding protein 2-like... 597 e-171
Alignment gi|XP_003122861.1| PREDICTED: DNA damage-binding protein 2-like... 597 e-171
>ref|XP_003361173.1| PREDICTED: DNA damage-binding protein 2-like [Sus scrofa].
Length = 427
Score = 597 bits (1538), Expect = e-171
Identities = 288/298 (96%), Positives = 289/298 (96%)
Frame = +3
Query: 225 MAPRKRPETQKTPEVVLRPKSKRNRSPRELEPEAKKLCLKGPGSSRRSDSGCLWAGLASL 404
MAPRKRPETQKTPEVVLRPKSKRNRSPRELEPEAKKLCLKGPGSSRRSDSGCLWAGLASL
Sbjct: 1 MAPRKRPETQKTPEVVLRPKSKRNRSPRELEPEAKKLCLKGPGSSRRSDSGCLWAGLASL 60
Query: 405 RVPAPCSSIIRALHHYKLGRTSWPSLQQGLQQSFLHTLASYRIFQKAAPFDRRATSLAWH 584
RVPAPCSSIIRALHHYKLGRTSWPSLQQGLQQSFLHTLASYRIFQKAAPFDRRATSLAWH
Sbjct: 61 RVPAPCSSIIRALHHYKLGRTSWPSLQQGLQQSFLHTLASYRIFQKAAPFDRRATSLAWH 120
Query: 585 PTHPRILAVGSKGGDILLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNANQFFTSSMEGT 764
PTHPRILAVGSKGGDILLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNANQFFTSSMEGT
Sbjct: 121 PTHPRILAVGSKGGDILLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNANQFFTSSMEGT 180
Query: 765 TRLQDFKGNTLRVFASSGTCNIWFCSLDXXXXXXXXXTGDNVGHVILLNLDGKELWNLRM 944
TRLQDFKGNTLRVFASSGTCNIWFCSLD TGDNVGHVILLNLDGKELWNLRM
Sbjct: 181 TRLQDFKGNTLRVFASSGTCNIWFCSLDVSVRSRVVVTGDNVGHVILLNLDGKELWNLRM 240
Query: 945 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKTSFLYSLPHRHPVNAALFSP 1118
HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK+SFLYSLPHRHPVNAALFSP
Sbjct: 241 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKSSFLYSLPHRHPVNAALFSP 298
>ref|XP_003122861.1| PREDICTED: DNA damage-binding protein 2-like [Sus scrofa].
Length = 427
Score = 597 bits (1538), Expect = e-171
Identities = 288/298 (96%), Positives = 289/298 (96%)
Frame = +3
Query: 225 MAPRKRPETQKTPEVVLRPKSKRNRSPRELEPEAKKLCLKGPGSSRRSDSGCLWAGLASL 404
MAPRKRPETQKTPEVVLRPKSKRNRSPRELEPEAKKLCLKGPGSSRRSDSGCLWAGLASL
Sbjct: 1 MAPRKRPETQKTPEVVLRPKSKRNRSPRELEPEAKKLCLKGPGSSRRSDSGCLWAGLASL 60
Query: 405 RVPAPCSSIIRALHHYKLGRTSWPSLQQGLQQSFLHTLASYRIFQKAAPFDRRATSLAWH 584
RVPAPCSSIIRALHHYKLGRTSWPSLQQGLQQSFLHTLASYRIFQKAAPFDRRATSLAWH
Sbjct: 61 RVPAPCSSIIRALHHYKLGRTSWPSLQQGLQQSFLHTLASYRIFQKAAPFDRRATSLAWH 120
Query: 585 PTHPRILAVGSKGGDILLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNANQFFTSSMEGT 764
PTHPRILAVGSKGGDILLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNANQFFTSSMEGT
Sbjct: 121 PTHPRILAVGSKGGDILLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNANQFFTSSMEGT 180
Query: 765 TRLQDFKGNTLRVFASSGTCNIWFCSLDXXXXXXXXXTGDNVGHVILLNLDGKELWNLRM 944
TRLQDFKGNTLRVFASSGTCNIWFCSLD TGDNVGHVILLNLDGKELWNLRM
Sbjct: 181 TRLQDFKGNTLRVFASSGTCNIWFCSLDVSVRSRVVVTGDNVGHVILLNLDGKELWNLRM 240
Query: 945 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKTSFLYSLPHRHPVNAALFSP 1118
HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK+SFLYSLPHRHPVNAALFSP
Sbjct: 241 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKSSFLYSLPHRHPVNAALFSP 298
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,858,302
Number of extensions: 1046519
Number of successful extensions: 4751
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4704
Number of HSP's successfully gapped: 2
Length of query: 372
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 272
Effective length of database: 8,854,232
Effective search space: 2408351104
Effective search space used: 2408351104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003507
(1118 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 686 0.0
gb|GL893675.2| Sus scrofa unplaced genomic scaffold ChrUScaf1560 387 e-105
>Sscrofa_Chr02
|| Length = 162569375
Score = 686 bits (346), Expect = 0.0
Identities = 346/346 (100%)
Strand = Plus / Minus
Query: 8 ctggggagcggctgaggccctccccttacacacttcccatctctccgcgcgcgcccccgc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16592465 ctggggagcggctgaggccctccccttacacacttcccatctctccgcgcgcgcccccgc 16592406
Query: 68 cttcccggtgagcctgtttggcgggaagttggcttagttggcttacctgtggctcagcgg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16592405 cttcccggtgagcctgtttggcgggaagttggcttagttggcttacctgtggctcagcgg 16592346
Query: 128 gctccctggtccctcccttatttctccccagaagcttctcaatcttcccctggtgatctc 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16592345 gctccctggtccctcccttatttctccccagaagcttctcaatcttcccctggtgatctc 16592286
Query: 188 ggcatagggcatagtaccccttcgcacggaggacgcgatggctcccaggaaacgcccaga 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16592285 ggcatagggcatagtaccccttcgcacggaggacgcgatggctcccaggaaacgcccaga 16592226
Query: 248 aacccagaagacccctgaggtggttttacgccccaagagcaagaggaacagaagcccccg 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16592225 aacccagaagacccctgaggtggttttacgccccaagagcaagaggaacagaagcccccg 16592166
Query: 308 tgagctggagcccgaggccaagaagctctgtttgaagggccccggt 353
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16592165 tgagctggagcccgaggccaagaagctctgtttgaagggccccggt 16592120
Score = 387 bits (195), Expect = e-105
Identities = 195/195 (100%)
Strand = Plus / Minus
Query: 486 cagggtctccagcagtcctttttgcacactctggcttcttaccggatattccaaaaggct 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16590518 cagggtctccagcagtcctttttgcacactctggcttcttaccggatattccaaaaggct 16590459
Query: 546 gccccttttgacaggagggccacatccctggcatggcacccaactcaccccaggatcctg 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16590458 gccccttttgacaggagggccacatccctggcatggcacccaactcaccccaggatcctg 16590399
Query: 606 gctgtgggctccaaagggggagatatcttgctctggaactttggcataaaggacaaaccc 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16590398 gctgtgggctccaaagggggagatatcttgctctggaactttggcataaaggacaaaccc 16590339
Query: 666 accttcattaaaggg 680
|||||||||||||||
Sbjct: 16590338 accttcattaaaggg 16590324
Score = 349 bits (176), Expect = 2e-93
Identities = 179/180 (99%)
Strand = Plus / Minus
Query: 925 agctttggaatctgagaatgcacaaaaagaaagtgacccatgtggccttgaacccatgct 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16569322 agctttggaatctgagaatgcacaaaaagaaagtgacccatgtggccttgaacccatgct 16569263
Query: 985 gtgattggttcctggccacagcctccgtagatcaaacagtgaaaatctgggacctgcgcc 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16569262 gtgattggttcctggccacagcctccgtagatcaaacagtgaaaatctgggacctgcgcc 16569203
Query: 1045 aggttagagggaaaaccagcttcctctactcgctgccgcacaggcatcctgtcaacgcag 1104
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16569202 aggttagagggaaatccagcttcctctactcgctgccgcacaggcatcctgtcaacgcag 16569143
Score = 291 bits (147), Expect = 4e-76
Identities = 147/147 (100%)
Strand = Plus / Minus
Query: 680 gattggagctggagggagcatcactgggctgaagtttaaccctctcaatgccaaccagtt 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16570914 gattggagctggagggagcatcactgggctgaagtttaaccctctcaatgccaaccagtt 16570855
Query: 740 tttcacctcctcaatggagggaacaactaggctgcaagactttaaaggcaacactctccg 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16570854 tttcacctcctcaatggagggaacaactaggctgcaagactttaaaggcaacactctccg 16570795
Query: 800 agtttttgccagctcaggcacctgcaa 826
|||||||||||||||||||||||||||
Sbjct: 16570794 agtttttgccagctcaggcacctgcaa 16570768
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 351 ggttccagcagaagatctgactcaggctgcctttgggcggggttggctagcctgcgggtc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16591019 ggttccagcagaagatctgactcaggctgcctttgggcggggttggctagcctgcgggtc 16590960
Query: 411 ccggcaccatgcagcagcatcatcagggctctccatcattataagctgggcagaacctcc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16590959 ccggcaccatgcagcagcatcatcagggctctccatcattataagctgggcagaacctcc 16590900
Query: 471 tggccatcactacagcagg 489
|||||||||||||||||||
Sbjct: 16590899 tggccatcactacagcagg 16590881
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 827 catctggttttgcagcctggatgtgtcggtcagaagccgagtggtggtcacaggagacaa 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16569511 catctggttttgcagcctggatgtgtcggtcagaagccgagtggtggtcacaggagacaa 16569452
Query: 887 tgtggggcatgtgatcctgctgaacttggacggcaaggag 926
||||||||||||||||||||||||||||||||||||||||
Sbjct: 16569451 tgtggggcatgtgatcctgctgaacttggacggcaaggag 16569412
>gb|GL893675.2| Sus scrofa unplaced genomic scaffold ChrUScaf1560
Length = 118150
Score = 387 bits (195), Expect = e-105
Identities = 195/195 (100%)
Strand = Plus / Plus
Query: 486 cagggtctccagcagtcctttttgcacactctggcttcttaccggatattccaaaaggct 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80944 cagggtctccagcagtcctttttgcacactctggcttcttaccggatattccaaaaggct 81003
Query: 546 gccccttttgacaggagggccacatccctggcatggcacccaactcaccccaggatcctg 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81004 gccccttttgacaggagggccacatccctggcatggcacccaactcaccccaggatcctg 81063
Query: 606 gctgtgggctccaaagggggagatatcttgctctggaactttggcataaaggacaaaccc 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81064 gctgtgggctccaaagggggagatatcttgctctggaactttggcataaaggacaaaccc 81123
Query: 666 accttcattaaaggg 680
|||||||||||||||
Sbjct: 81124 accttcattaaaggg 81138
Score = 349 bits (176), Expect = 2e-93
Identities = 179/180 (99%)
Strand = Plus / Plus
Query: 925 agctttggaatctgagaatgcacaaaaagaaagtgacccatgtggccttgaacccatgct 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100436 agctttggaatctgagaatgcacaaaaagaaagtgacccatgtggccttgaacccatgct 100495
Query: 985 gtgattggttcctggccacagcctccgtagatcaaacagtgaaaatctgggacctgcgcc 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100496 gtgattggttcctggccacagcctccgtagatcaaacagtgaaaatctgggacctgcgcc 100555
Query: 1045 aggttagagggaaaaccagcttcctctactcgctgccgcacaggcatcctgtcaacgcag 1104
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100556 aggttagagggaaatccagcttcctctactcgctgccgcacaggcatcctgtcaacgcag 100615
Score = 291 bits (147), Expect = 4e-76
Identities = 147/147 (100%)
Strand = Plus / Plus
Query: 680 gattggagctggagggagcatcactgggctgaagtttaaccctctcaatgccaaccagtt 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98846 gattggagctggagggagcatcactgggctgaagtttaaccctctcaatgccaaccagtt 98905
Query: 740 tttcacctcctcaatggagggaacaactaggctgcaagactttaaaggcaacactctccg 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98906 tttcacctcctcaatggagggaacaactaggctgcaagactttaaaggcaacactctccg 98965
Query: 800 agtttttgccagctcaggcacctgcaa 826
|||||||||||||||||||||||||||
Sbjct: 98966 agtttttgccagctcaggcacctgcaa 98992
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 351 ggttccagcagaagatctgactcaggctgcctttgggcggggttggctagcctgcgggtc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80443 ggttccagcagaagatctgactcaggctgcctttgggcggggttggctagcctgcgggtc 80502
Query: 411 ccggcaccatgcagcagcatcatcagggctctccatcattataagctgggcagaacctcc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80503 ccggcaccatgcagcagcatcatcagggctctccatcattataagctgggcagaacctcc 80562
Query: 471 tggccatcactacagcagg 489
|||||||||||||||||||
Sbjct: 80563 tggccatcactacagcagg 80581
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 827 catctggttttgcagcctggatgtgtcggtcagaagccgagtggtggtcacaggagacaa 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100247 catctggttttgcagcctggatgtgtcggtcagaagccgagtggtggtcacaggagacaa 100306
Query: 887 tgtggggcatgtgatcctgctgaacttggacggcaaggag 926
||||||||||||||||||||||||||||||||||||||||
Sbjct: 100307 tgtggggcatgtgatcctgctgaacttggacggcaaggag 100346
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,431,841
Number of extensions: 229
Number of successful extensions: 229
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 11
Length of query: 1118
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1097
Effective length of database: 2,808,413,156
Effective search space: 3080829232132
Effective search space used: 3080829232132
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)