Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003510
(762 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029724.1| protein maestro [Bos taurus]. 259 2e-69
Alignment gi|XP_002696411.1| PREDICTED: c11.1-like [Bos taurus]. 107 8e-24
Alignment gi|XP_597009.3| PREDICTED: c11.1-like [Bos taurus]. 107 8e-24
Alignment gi|XP_002686608.1| PREDICTED: hypothetical protein [Bos taurus]. 77 2e-14
Alignment gi|XP_002684141.1| PREDICTED: hypothetical protein [Bos taurus]. 77 2e-14
>ref|NP_001029724.1| protein maestro [Bos taurus].
Length = 263
Score = 259 bits (661), Expect = 2e-69
Identities = 131/184 (71%), Positives = 141/184 (76%), Gaps = 2/184 (1%)
Frame = +1
Query: 217 LGQPLSIPTAQPXXXXXXXXXXXXX--WKLKLQKREPLKNAVLVLAERARDPSVKKRHMA 390
LGQPLS P QP W L+LQK+EPLKN +LAE ARDPSVKKRHM
Sbjct: 9 LGQPLSSPATQPKKRSTSVMSFFSKVSWNLRLQKQEPLKNVFFILAETARDPSVKKRHMV 68
Query: 391 MRGLGALACETPDKVRKYKKIVLDLLVHGLYDPVSSDVVHESLKTLTXXXXXXXXXXXXP 570
MRGLG +ACETPDKVRKYKKI+LDLLVHGLYDPVSS+V+HES+KTLT
Sbjct: 69 MRGLGTMACETPDKVRKYKKIILDLLVHGLYDPVSSEVIHESMKTLTIILGKMQGKALGS 128
Query: 571 FFIDVTLQTRTLLDDENDSLRYSAFVLFGPLAAFAGRKWKRFFTRQVQQTQDSLLNHLQD 750
FFID+TLQTRTLLDDENDSLRYSAFVLFG LA AGRKWK FFTRQV+QTQDSLL HLQD
Sbjct: 129 FFIDITLQTRTLLDDENDSLRYSAFVLFGQLADLAGRKWKSFFTRQVKQTQDSLLTHLQD 188
Query: 751 RNPQ 762
RNPQ
Sbjct: 189 RNPQ 192
>ref|XP_002696411.1| PREDICTED: c11.1-like [Bos taurus].
Length = 1586
Score = 107 bits (268), Expect = 8e-24
Identities = 57/153 (37%), Positives = 90/153 (58%)
Frame = +1
Query: 304 LQKREPLKNAVLVLAERARDPSVKKRHMAMRGLGALACETPDKVRKYKKIVLDLLVHGLY 483
L K L+ ++++ + A D + R MA+RGLG A P KV+K+K+++L+ ++ GLY
Sbjct: 1295 LWKHGNLREVLVLMDQSAWDSNPILRQMAIRGLGNTASGAPHKVKKHKQMMLESVIRGLY 1354
Query: 484 DPVSSDVVHESLKTLTXXXXXXXXXXXXPFFIDVTLQTRTLLDDENDSLRYSAFVLFGPL 663
++VV ESLK L +F ++ LQTRT +DE D +R +A +LF L
Sbjct: 1355 HLARTEVVCESLKALKKILDLLTDRDVSFYFKEIVLQTRTFFEDEQDDVRLTAILLFENL 1414
Query: 664 AAFAGRKWKRFFTRQVQQTQDSLLNHLQDRNPQ 762
A+ GR+WK FF +++++ S L HL D NP+
Sbjct: 1415 ASLTGRRWKIFFAEEIKKSMISFLLHLWDPNPK 1447
>ref|XP_597009.3| PREDICTED: c11.1-like [Bos taurus].
Length = 1586
Score = 107 bits (268), Expect = 8e-24
Identities = 57/153 (37%), Positives = 90/153 (58%)
Frame = +1
Query: 304 LQKREPLKNAVLVLAERARDPSVKKRHMAMRGLGALACETPDKVRKYKKIVLDLLVHGLY 483
L K L+ ++++ + A D + R MA+RGLG A P KV+K+K+++L+ ++ GLY
Sbjct: 1295 LWKHGNLREVLVLMDQSAWDSNPILRQMAIRGLGNTASGAPHKVKKHKQMMLESVIRGLY 1354
Query: 484 DPVSSDVVHESLKTLTXXXXXXXXXXXXPFFIDVTLQTRTLLDDENDSLRYSAFVLFGPL 663
++VV ESLK L +F ++ LQTRT +DE D +R +A +LF L
Sbjct: 1355 HLARTEVVCESLKALKKILDLLTDRDVSFYFKEIVLQTRTFFEDEQDDVRLTAILLFENL 1414
Query: 664 AAFAGRKWKRFFTRQVQQTQDSLLNHLQDRNPQ 762
A+ GR+WK FF +++++ S L HL D NP+
Sbjct: 1415 ASLTGRRWKIFFAEEIKKSMISFLLHLWDPNPK 1447
>ref|XP_002686608.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 1702
Score = 77.0 bits (188), Expect = 2e-14
Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
Frame = +1
Query: 304 LQKREPLKNAVLVLAERARDPSVKKRHMAMRGLGALACETPDKVRKYKKIVLDLLVHGLY 483
L + + LK AVL+L + A R +++R LG +A P KVR+Y+K++L+ + L
Sbjct: 1406 LHQEKLLKRAVLMLEKGAEQEDEVLRMLSLRALGNMALGAPRKVRQYRKLLLEKCLCSLR 1465
Query: 484 DP-VSSDVVHESLKTLTXXXXXXXXXXXXPFFIDVTLQTRTLLDDENDSLRYSAFVLFGP 660
P VS+ V E L+ L F ++ Q R D+E++ LR AF++FG
Sbjct: 1466 GPGVSTSVTSEGLEVLAKVLVELREGDLGSTFNAISEQCRAFFDNESELLRLKAFIVFGK 1525
Query: 661 LAAFAGRKWKRFFTRQVQQTQDSLLNHLQD 750
LA K FF ++V++ L+ H QD
Sbjct: 1526 LAQVVRISKKHFFKQEVKKAWVPLMLHCQD 1555
>ref|XP_002684141.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 1702
Score = 77.0 bits (188), Expect = 2e-14
Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
Frame = +1
Query: 304 LQKREPLKNAVLVLAERARDPSVKKRHMAMRGLGALACETPDKVRKYKKIVLDLLVHGLY 483
L + + LK AVL+L + A R +++R LG +A P KVR+Y+K++L+ + L
Sbjct: 1406 LHQEKLLKRAVLMLEKGAEQEDEVLRMLSLRALGNMALGAPRKVRQYRKLLLEKCLCSLR 1465
Query: 484 DP-VSSDVVHESLKTLTXXXXXXXXXXXXPFFIDVTLQTRTLLDDENDSLRYSAFVLFGP 660
P VS+ V E L+ L F ++ Q R D+E++ LR AF++FG
Sbjct: 1466 GPGVSTSVTSEGLEVLAKVLVELREGDLGSTFNAISEQCRAFFDNESELLRLKAFIVFGK 1525
Query: 661 LAAFAGRKWKRFFTRQVQQTQDSLLNHLQD 750
LA K FF ++V++ L+ H QD
Sbjct: 1526 LAQVVRISKKHFFKQEVKKAWVPLMLHCQD 1555
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,525,749
Number of extensions: 888132
Number of successful extensions: 2770
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2762
Number of HSP's successfully gapped: 5
Length of query: 254
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 154
Effective length of database: 14,372,574
Effective search space: 2213376396
Effective search space used: 2213376396
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003510
(762 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541097.2| PREDICTED: similar to maestro [Canis familiaris]. 251 5e-67
Alignment gi|XP_536489.2| PREDICTED: similar to complement component 6 [C... 111 8e-25
>ref|XP_541097.2| PREDICTED: similar to maestro [Canis familiaris].
Length = 592
Score = 251 bits (641), Expect = 5e-67
Identities = 126/183 (68%), Positives = 142/183 (77%), Gaps = 2/183 (1%)
Frame = +1
Query: 217 LGQPLSIPTAQPXXXXXXXXXXXXX--WKLKLQKREPLKNAVLVLAERARDPSVKKRHMA 390
LGQPL + T QP WKLK QKRE LKNA +LAE+ARDP+ KKRHMA
Sbjct: 353 LGQPLPMATTQPERKRTSVMSFLSKVSWKLKFQKRESLKNAFSILAEKARDPNDKKRHMA 412
Query: 391 MRGLGALACETPDKVRKYKKIVLDLLVHGLYDPVSSDVVHESLKTLTXXXXXXXXXXXXP 570
MRGLG +ACETPDKVRKYKK+VLDLLVHGLYDPVS++V+HES+KTLT
Sbjct: 413 MRGLGTMACETPDKVRKYKKVVLDLLVHGLYDPVSTEVIHESMKTLTIILGKIQGKSLGS 472
Query: 571 FFIDVTLQTRTLLDDENDSLRYSAFVLFGPLAAFAGRKWKRFFTRQVQQTQDSLLNHLQD 750
FF+D+TLQTRTLLDDEND LRYSAF+LFG LAAFAGRKWK+FFT QV+QTQDSLL HLQD
Sbjct: 473 FFVDITLQTRTLLDDENDHLRYSAFILFGQLAAFAGRKWKKFFTSQVKQTQDSLLIHLQD 532
Query: 751 RNP 759
R+P
Sbjct: 533 RDP 535
>ref|XP_536489.2| PREDICTED: similar to complement component 6 [Canis familiaris].
Length = 2211
Score = 111 bits (277), Expect = 8e-25
Identities = 58/153 (37%), Positives = 89/153 (58%)
Frame = +1
Query: 304 LQKREPLKNAVLVLAERARDPSVKKRHMAMRGLGALACETPDKVRKYKKIVLDLLVHGLY 483
L K L+ ++++ + A D + R MA+RGLG A P KV+K+K+I+L+ ++ GLY
Sbjct: 1920 LWKHGNLREVLILMDQSAWDSNATLRQMAIRGLGNTASGAPHKVKKHKQIILESIIRGLY 1979
Query: 484 DPVSSDVVHESLKTLTXXXXXXXXXXXXPFFIDVTLQTRTLLDDENDSLRYSAFVLFGPL 663
++VV ESLK L +F ++ LQTRT +DE D +R +A LF L
Sbjct: 1980 HLARTEVVCESLKALKKILELLTDRDVSFYFKEIVLQTRTFFEDEQDDVRLTAIFLFENL 2039
Query: 664 AAFAGRKWKRFFTRQVQQTQDSLLNHLQDRNPQ 762
A+ GR+WK FF +++++ S L HL D NP+
Sbjct: 2040 ASLTGRRWKIFFAEEIKKSMISFLLHLWDPNPK 2072
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,925,206
Number of extensions: 920253
Number of successful extensions: 2714
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2710
Number of HSP's successfully gapped: 2
Length of query: 254
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 154
Effective length of database: 15,540,904
Effective search space: 2393299216
Effective search space used: 2393299216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003510
(762 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_114145.2| protein maestro isoform a [Homo sapiens]. 254 4e-68
Alignment gi|NP_001120648.1| protein maestro isoform d [Homo sapiens]. 242 3e-64
Alignment gi|NP_001120646.1| protein maestro isoform b [Homo sapiens]. 168 4e-42
Alignment gi|NP_001120647.1| protein maestro isoform c [Homo sapiens]. 155 3e-38
Alignment gi|NP_775760.3| HEAT repeat-containing protein 7B2 [Homo sapien... 110 1e-24
Alignment gi|XP_291007.8| PREDICTED: HEAT repeat-containing protein 7B1 [... 79 4e-15
Alignment gi|XP_001721292.4| PREDICTED: HEAT repeat-containing protein 7B... 79 4e-15
Alignment gi|NP_997297.2| hypothetical protein LOC389690 [Homo sapiens]. 50 2e-06
Alignment gi|XP_003403585.1| PREDICTED: HEAT repeat-containing protein 7A... 49 4e-06
Alignment gi|XP_003403584.1| PREDICTED: HEAT repeat-containing protein 7A... 49 4e-06
>ref|NP_114145.2| protein maestro isoform a [Homo sapiens].
Length = 248
Score = 254 bits (650), Expect = 4e-68
Identities = 130/184 (70%), Positives = 143/184 (77%), Gaps = 2/184 (1%)
Frame = +1
Query: 217 LGQPLSIPTAQPXXXXXXXXXXXXX--WKLKLQKREPLKNAVLVLAERARDPSVKKRHMA 390
LGQPLSIPT+QP WKL+ QKREPLKN +LAERARDPS KKRHMA
Sbjct: 9 LGQPLSIPTSQPKQKRTSMISFFSKVSWKLRFQKREPLKNVFFILAERARDPSAKKRHMA 68
Query: 391 MRGLGALACETPDKVRKYKKIVLDLLVHGLYDPVSSDVVHESLKTLTXXXXXXXXXXXXP 570
MR LG +A E PDKVRKYKKIVLDLLV+GLYDPV+ +V+HES+KTLT
Sbjct: 69 MRNLGTMAYEAPDKVRKYKKIVLDLLVYGLYDPVNLEVIHESMKTLTVVLGKIQGKGLGS 128
Query: 571 FFIDVTLQTRTLLDDENDSLRYSAFVLFGPLAAFAGRKWKRFFTRQVQQTQDSLLNHLQD 750
FFID+TLQTRTLLDDENDSLRYSAFVLFG LAAFAGRKWK+FFT QV+QT+DSLL HLQD
Sbjct: 129 FFIDITLQTRTLLDDENDSLRYSAFVLFGQLAAFAGRKWKKFFTSQVKQTRDSLLIHLQD 188
Query: 751 RNPQ 762
RNPQ
Sbjct: 189 RNPQ 192
>ref|NP_001120648.1| protein maestro isoform d [Homo sapiens].
Length = 262
Score = 242 bits (617), Expect = 3e-64
Identities = 119/157 (75%), Positives = 131/157 (83%)
Frame = +1
Query: 292 WKLKLQKREPLKNAVLVLAERARDPSVKKRHMAMRGLGALACETPDKVRKYKKIVLDLLV 471
WKL+ QKREPLKN +LAERARDPS KKRHMAMR LG +A E PDKVRKYKKIVLDLLV
Sbjct: 50 WKLRFQKREPLKNVFFILAERARDPSAKKRHMAMRNLGTMAYEAPDKVRKYKKIVLDLLV 109
Query: 472 HGLYDPVSSDVVHESLKTLTXXXXXXXXXXXXPFFIDVTLQTRTLLDDENDSLRYSAFVL 651
+GLYDPV+ +V+HES+KTLT FFID+TLQTRTLLDDENDSLRYSAFVL
Sbjct: 110 YGLYDPVNLEVIHESMKTLTVVLGKIQGKGLGSFFIDITLQTRTLLDDENDSLRYSAFVL 169
Query: 652 FGPLAAFAGRKWKRFFTRQVQQTQDSLLNHLQDRNPQ 762
FG LAAFAGRKWK+FFT QV+QT+DSLL HLQDRNPQ
Sbjct: 170 FGQLAAFAGRKWKKFFTSQVKQTRDSLLIHLQDRNPQ 206
>ref|NP_001120646.1| protein maestro isoform b [Homo sapiens].
Length = 196
Score = 168 bits (426), Expect = 4e-42
Identities = 87/135 (64%), Positives = 97/135 (71%), Gaps = 2/135 (1%)
Frame = +1
Query: 217 LGQPLSIPTAQPXXXXXXXXXXXXX--WKLKLQKREPLKNAVLVLAERARDPSVKKRHMA 390
LGQPLSIPT+QP WKL+ QKREPLKN +LAERARDPS KKRHMA
Sbjct: 9 LGQPLSIPTSQPKQKRTSMISFFSKVSWKLRFQKREPLKNVFFILAERARDPSAKKRHMA 68
Query: 391 MRGLGALACETPDKVRKYKKIVLDLLVHGLYDPVSSDVVHESLKTLTXXXXXXXXXXXXP 570
MR LG +A E PDKVRKYKKIVLDLLV+GLYDPV+ +V+HES+KTLT
Sbjct: 69 MRNLGTMAYEAPDKVRKYKKIVLDLLVYGLYDPVNLEVIHESMKTLTVVLGKIQGKGLGS 128
Query: 571 FFIDVTLQTRTLLDD 615
FFID+TLQTRTLLDD
Sbjct: 129 FFIDITLQTRTLLDD 143
>ref|NP_001120647.1| protein maestro isoform c [Homo sapiens].
Length = 210
Score = 155 bits (393), Expect = 3e-38
Identities = 76/108 (70%), Positives = 85/108 (78%)
Frame = +1
Query: 292 WKLKLQKREPLKNAVLVLAERARDPSVKKRHMAMRGLGALACETPDKVRKYKKIVLDLLV 471
WKL+ QKREPLKN +LAERARDPS KKRHMAMR LG +A E PDKVRKYKKIVLDLLV
Sbjct: 50 WKLRFQKREPLKNVFFILAERARDPSAKKRHMAMRNLGTMAYEAPDKVRKYKKIVLDLLV 109
Query: 472 HGLYDPVSSDVVHESLKTLTXXXXXXXXXXXXPFFIDVTLQTRTLLDD 615
+GLYDPV+ +V+HES+KTLT FFID+TLQTRTLLDD
Sbjct: 110 YGLYDPVNLEVIHESMKTLTVVLGKIQGKGLGSFFIDITLQTRTLLDD 157
>ref|NP_775760.3| HEAT repeat-containing protein 7B2 [Homo sapiens].
Length = 1585
Score = 110 bits (276), Expect = 1e-24
Identities = 58/153 (37%), Positives = 89/153 (58%)
Frame = +1
Query: 304 LQKREPLKNAVLVLAERARDPSVKKRHMAMRGLGALACETPDKVRKYKKIVLDLLVHGLY 483
L K L+N ++++ + A D + R MA+RGLG A P KV+K+K+++L+ ++ GLY
Sbjct: 1295 LWKHGNLRNVLILMDQSAWDSNATLRQMAIRGLGNTASGAPHKVKKHKQLMLESIIRGLY 1354
Query: 484 DPVSSDVVHESLKTLTXXXXXXXXXXXXPFFIDVTLQTRTLLDDENDSLRYSAFVLFGPL 663
++VV ESLK L +F ++ LQTRT +DE D +R +A LF L
Sbjct: 1355 HLARTEVVCESLKALKKILELLTDRDVSFYFKEIVLQTRTFFEDEQDDVRLTAIFLFEDL 1414
Query: 664 AAFAGRKWKRFFTRQVQQTQDSLLNHLQDRNPQ 762
A GR+WK FF +++++ S L HL D NP+
Sbjct: 1415 APLTGRRWKIFFAEEIKKSLISFLLHLWDPNPK 1447
>ref|XP_291007.8| PREDICTED: HEAT repeat-containing protein 7B1 [Homo sapiens].
Length = 1688
Score = 79.0 bits (193), Expect = 4e-15
Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 1/150 (0%)
Frame = +1
Query: 304 LQKREPLKNAVLVLAERA-RDPSVKKRHMAMRGLGALACETPDKVRKYKKIVLDLLVHGL 480
L + + LK A L+L + A ++ R +++R LG +A P KV++Y+K++L+ + L
Sbjct: 1392 LYQEKLLKPAALLLEKGADQEEDEALRVLSLRALGNMALGAPKKVKQYRKVLLEKCLGPL 1451
Query: 481 YDPVSSDVVHESLKTLTXXXXXXXXXXXXPFFIDVTLQTRTLLDDENDSLRYSAFVLFGP 660
+PVS+ V E ++ LT F ++ Q R D+E++ LR AF+LFG
Sbjct: 1452 REPVSNSVTAEGMEALTKILAELREGDVGSSFDAMSEQCRIFFDNESELLRLKAFILFGK 1511
Query: 661 LAAFAGRKWKRFFTRQVQQTQDSLLNHLQD 750
LA G K FF +V++ L+ H QD
Sbjct: 1512 LARVVGMSKKHFFKGEVKKAWIPLMLHSQD 1541
>ref|XP_001721292.4| PREDICTED: HEAT repeat-containing protein 7B1 [Homo sapiens].
Length = 1689
Score = 79.0 bits (193), Expect = 4e-15
Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 1/150 (0%)
Frame = +1
Query: 304 LQKREPLKNAVLVLAERA-RDPSVKKRHMAMRGLGALACETPDKVRKYKKIVLDLLVHGL 480
L + + LK A L+L + A ++ R +++R LG +A P KV++Y+K++L+ + L
Sbjct: 1388 LYQEKLLKPAALLLEKGADQEEDEALRVLSLRALGNMALGAPKKVKQYRKVLLEKCLGPL 1447
Query: 481 YDPVSSDVVHESLKTLTXXXXXXXXXXXXPFFIDVTLQTRTLLDDENDSLRYSAFVLFGP 660
+PVS+ V E ++ LT F ++ Q R D+E++ LR AF+LFG
Sbjct: 1448 REPVSNSVTAEGMEALTKILAELREGDVGSSFDAMSEQCRIFFDNESELLRLKAFILFGK 1507
Query: 661 LAAFAGRKWKRFFTRQVQQTQDSLLNHLQD 750
LA G K FF +V++ L+ H QD
Sbjct: 1508 LARVVGMSKKHFFKGEVKKAWIPLMLHSQD 1537
>ref|NP_997297.2| hypothetical protein LOC389690 [Homo sapiens].
Length = 1318
Score = 50.4 bits (119), Expect = 2e-06
Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 1/148 (0%)
Frame = +1
Query: 319 PLKNAVLVLAERARDPSVKKRHMAMRGLGALACETPDKVRKYKKIVLDLLVHGLYDPVSS 498
P + A+ VLA+ DPS + R ++++GL + PDK + + LL G + S
Sbjct: 1038 PKQAALTVLAQGLHDPSPEVRVLSLQGLSNILFH-PDKGSLLQGQLRPLL-DGFFQS-SD 1094
Query: 499 DVVHESLKTLTXXXXXXXXXXXXPFFIDVTLQTRTLLDDENDSLRYSAFVLFGPL-AAFA 675
V+ + T++ + V + TR+ +DE D +R +A LFG L AA A
Sbjct: 1095 QVIVCIMGTVSDTLHRLGAQGTGSQSLGVAISTRSFFNDERDGIRAAAMALFGDLVAAMA 1154
Query: 676 GRKWKRFFTRQVQQTQDSLLNHLQDRNP 759
R+ T QV Q+ LL HL+D+ P
Sbjct: 1155 DRELSGLRT-QVHQSMVPLLLHLKDQCP 1181
>ref|XP_003403585.1| PREDICTED: HEAT repeat-containing protein 7A-like isoform 3 [Homo
sapiens].
Length = 568
Score = 49.3 bits (116), Expect = 4e-06
Identities = 41/138 (29%), Positives = 57/138 (41%), Gaps = 2/138 (1%)
Frame = +1
Query: 343 LAERARDPSVKKRHMAMRGLGALACETPDKVRKYKKIVLDLLVHGLYDPVS--SDVVHES 516
LA R +D R + +RGL LA PDKVR + +L ++ GL D + S V E+
Sbjct: 311 LAARQKDTCASVRRLVLRGLANLASGCPDKVRTHGPQLLTAMIGGLDDGDNPHSPVALEA 370
Query: 517 LKTLTXXXXXXXXXXXXPFFIDVTLQTRTLLDDENDSLRYSAFVLFGPLAAFAGRKWKRF 696
+ L + V ++ R D E R ++ LFG L +
Sbjct: 371 MLGLARLVHLVESWDLRSGLLHVAIRIRPFFDSEKMEFRTASIRLFGHLNKVCHGDCEDV 430
Query: 697 FTRQVQQTQDSLLNHLQD 750
F QV LL HLQD
Sbjct: 431 FLDQVVGGLAPLLLHLQD 448
>ref|XP_003403584.1| PREDICTED: HEAT repeat-containing protein 7A-like isoform 2 [Homo
sapiens].
Length = 366
Score = 49.3 bits (116), Expect = 4e-06
Identities = 41/138 (29%), Positives = 57/138 (41%), Gaps = 2/138 (1%)
Frame = +1
Query: 343 LAERARDPSVKKRHMAMRGLGALACETPDKVRKYKKIVLDLLVHGLYDPVS--SDVVHES 516
LA R +D R + +RGL LA PDKVR + +L ++ GL D + S V E+
Sbjct: 93 LAARQKDTCASVRRLVLRGLANLASGCPDKVRTHGPQLLTAMIGGLDDGDNPHSPVALEA 152
Query: 517 LKTLTXXXXXXXXXXXXPFFIDVTLQTRTLLDDENDSLRYSAFVLFGPLAAFAGRKWKRF 696
+ L + V ++ R D E R ++ LFG L +
Sbjct: 153 MLGLARLVHLVESWDLRSGLLHVAIRIRPFFDSEKMEFRTASIRLFGHLNKVCHGDCEDV 212
Query: 697 FTRQVQQTQDSLLNHLQD 750
F QV LL HLQD
Sbjct: 213 FLDQVVGGLAPLLLHLQD 230
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,230,922
Number of extensions: 893397
Number of successful extensions: 2630
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 2622
Number of HSP's successfully gapped: 12
Length of query: 254
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 154
Effective length of database: 15,000,764
Effective search space: 2310117656
Effective search space used: 2310117656
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003510
(762 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082017.2| protein maestro [Mus musculus]. 234 5e-62
Alignment gi|NP_001159538.1| HEAT repeat-containing protein 7B2 [Mus musc... 119 3e-27
Alignment gi|NP_001170835.1| HEAT repeat-containing protein 7B1 [Mus musc... 77 1e-14
Alignment gi|NP_780666.3| HEAT repeat containing 7A isoform 1 [Mus muscul... 50 2e-06
>ref|NP_082017.2| protein maestro [Mus musculus].
Length = 245
Score = 234 bits (597), Expect = 5e-62
Identities = 120/182 (65%), Positives = 139/182 (76%), Gaps = 2/182 (1%)
Frame = +1
Query: 223 QPLSIPTAQPXXXXXXXXXXXXX--WKLKLQKREPLKNAVLVLAERARDPSVKKRHMAMR 396
QPL PT+Q WKL+LQKRE LKNA+ VLAERARDP+ KKRH+AMR
Sbjct: 8 QPLPTPTSQSKKRRTPLLSFLSKVSWKLRLQKRELLKNALFVLAERARDPNAKKRHLAMR 67
Query: 397 GLGALACETPDKVRKYKKIVLDLLVHGLYDPVSSDVVHESLKTLTXXXXXXXXXXXXPFF 576
GLGALA E PDKVRKYKK++LDLLV GLYDPVSS+V+HES+KTLT FF
Sbjct: 68 GLGALAREAPDKVRKYKKVMLDLLVRGLYDPVSSEVIHESVKTLTIMLGKIQGHGLGSFF 127
Query: 577 IDVTLQTRTLLDDENDSLRYSAFVLFGPLAAFAGRKWKRFFTRQVQQTQDSLLNHLQDRN 756
ID+TLQ RTLLDDE+DS+RYSAFVLFG LA+FAG +WK+FFT+QV QTQDSLL HLQD +
Sbjct: 128 IDITLQARTLLDDEDDSVRYSAFVLFGQLASFAGWRWKKFFTQQVNQTQDSLLGHLQDES 187
Query: 757 PQ 762
P+
Sbjct: 188 PK 189
>ref|NP_001159538.1| HEAT repeat-containing protein 7B2 [Mus musculus].
Length = 1581
Score = 119 bits (297), Expect = 3e-27
Identities = 62/153 (40%), Positives = 90/153 (58%)
Frame = +1
Query: 304 LQKREPLKNAVLVLAERARDPSVKKRHMAMRGLGALACETPDKVRKYKKIVLDLLVHGLY 483
L K L++ ++ + + ARD + R MA+RGLG AC P KVRKYK+++L+ ++ GLY
Sbjct: 1291 LWKHGNLRDVLIFMDQNARDSNAILRQMAIRGLGNTACGAPHKVRKYKQMMLECIIRGLY 1350
Query: 484 DPVSSDVVHESLKTLTXXXXXXXXXXXXPFFIDVTLQTRTLLDDENDSLRYSAFVLFGPL 663
++VV ESLK L +F ++ LQTRT +DE D +R +A LF L
Sbjct: 1351 HLARTEVVCESLKALKKILELLTERDINFYFKEIVLQTRTFFEDEQDDVRLTAISLFEDL 1410
Query: 664 AAFAGRKWKRFFTRQVQQTQDSLLNHLQDRNPQ 762
A GR+WK FF +V+++ S L HL D NP+
Sbjct: 1411 ATLTGRRWKIFFAEEVKKSMISFLLHLWDPNPK 1443
>ref|NP_001170835.1| HEAT repeat-containing protein 7B1 [Mus musculus].
Length = 1679
Score = 77.0 bits (188), Expect = 1e-14
Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 1/153 (0%)
Frame = +1
Query: 304 LQKREPLKNAVLVLAERA-RDPSVKKRHMAMRGLGALACETPDKVRKYKKIVLDLLVHGL 480
L + + L+ VL+L + A +D + +++R LG +A P KV++Y+K++L+ + L
Sbjct: 1383 LHQEKLLRPVVLMLEKGAGQDKDETLQVLSLRALGNMALGAPRKVKQYRKLLLEKCLGSL 1442
Query: 481 YDPVSSDVVHESLKTLTXXXXXXXXXXXXPFFIDVTLQTRTLLDDENDSLRYSAFVLFGP 660
VSS + E ++ LT F ++ Q R D+E++ LR AFVLFG
Sbjct: 1443 QGQVSSSAMAEGMEALTKVLAELREGDIGSSFEAISKQCRAFFDNESELLRLKAFVLFGK 1502
Query: 661 LAAFAGRKWKRFFTRQVQQTQDSLLNHLQDRNP 759
L G K FF +V++ SLL H QD P
Sbjct: 1503 LTKVVGISKKHFFKGEVKRGWVSLLLHCQDPCP 1535
>ref|NP_780666.3| HEAT repeat containing 7A isoform 1 [Mus musculus].
Length = 1640
Score = 49.7 bits (117), Expect = 2e-06
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 2/138 (1%)
Frame = +1
Query: 343 LAERARDPSVKKRHMAMRGLGALACETPDKVRKYKKIVLDLLVHGL--YDPVSSDVVHES 516
L R +D S R + +RGL +A +PDKVR + +L +V GL D S V E+
Sbjct: 1367 LTARLKDSSASVRRLVLRGLANMASGSPDKVRAHGPQLLTAMVSGLDDGDEPHSPVALEA 1426
Query: 517 LKTLTXXXXXXXXXXXXPFFIDVTLQTRTLLDDENDSLRYSAFVLFGPLAAFAGRKWKRF 696
+ L+ + T++ R D E R ++ LFG L +
Sbjct: 1427 MVGLSRLLDLVEPWDLRLVLLHTTIRIRPFFDSEKVEFRTASIRLFGHLNKACHGDCEDV 1486
Query: 697 FTRQVQQTQDSLLNHLQD 750
F QV LL HL+D
Sbjct: 1487 FLEQVVGGLVPLLLHLRD 1504
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,262,070
Number of extensions: 738860
Number of successful extensions: 2097
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2094
Number of HSP's successfully gapped: 4
Length of query: 254
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 155
Effective length of database: 12,643,995
Effective search space: 1959819225
Effective search space used: 1959819225
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003510
(762 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177103.1| protein maestro [Sus scrofa]. 299 1e-81
Alignment gi|XP_003133959.2| PREDICTED: HEAT repeat-containing protein 7B... 110 1e-24
Alignment gi|XP_003133791.1| PREDICTED: HEAT repeat-containing protein 7B... 82 4e-16
Alignment gi|XP_003125514.2| PREDICTED: HEAT repeat-containing protein 7A... 48 5e-06
Alignment gi|XP_003359733.1| PREDICTED: HEAT repeat-containing protein 7B... 48 7e-06
>ref|NP_001177103.1| protein maestro [Sus scrofa].
Length = 246
Score = 299 bits (766), Expect = 1e-81
Identities = 154/182 (84%), Positives = 154/182 (84%)
Frame = +1
Query: 217 LGQPLSIPTAQPXXXXXXXXXXXXXWKLKLQKREPLKNAVLVLAERARDPSVKKRHMAMR 396
LGQPLSIPTAQP WKLKLQKREPLKN VLVLAERARDPSVKKRHMAMR
Sbjct: 9 LGQPLSIPTAQPKKKSMMSFFSKVSWKLKLQKREPLKNGVLVLAERARDPSVKKRHMAMR 68
Query: 397 GLGALACETPDKVRKYKKIVLDLLVHGLYDPVSSDVVHESLKTLTXXXXXXXXXXXXPFF 576
GLGALACETPDKVRKYKKIVLDLLVHGLYDPVSSDVVHESLKTLT PFF
Sbjct: 69 GLGALACETPDKVRKYKKIVLDLLVHGLYDPVSSDVVHESLKTLTIILGKIQGKGLGPFF 128
Query: 577 IDVTLQTRTLLDDENDSLRYSAFVLFGPLAAFAGRKWKRFFTRQVQQTQDSLLNHLQDRN 756
IDVTLQTRTLLDDENDSLRYSAFVLFG LAAFAGRKWKRFFTRQVQQTQDSLL HLQDRN
Sbjct: 129 IDVTLQTRTLLDDENDSLRYSAFVLFGQLAAFAGRKWKRFFTRQVQQTQDSLLTHLQDRN 188
Query: 757 PQ 762
PQ
Sbjct: 189 PQ 190
>ref|XP_003133959.2| PREDICTED: HEAT repeat-containing protein 7B2 [Sus scrofa].
Length = 945
Score = 110 bits (274), Expect = 1e-24
Identities = 58/153 (37%), Positives = 90/153 (58%)
Frame = +1
Query: 304 LQKREPLKNAVLVLAERARDPSVKKRHMAMRGLGALACETPDKVRKYKKIVLDLLVHGLY 483
L K L++ ++++ + A D + R MA+RGLG A P KV+K+K+I+L+ ++ GLY
Sbjct: 654 LWKHWHLRDVLILMDQSAWDSNAILRQMAIRGLGNTASGAPHKVKKHKQIILESVIRGLY 713
Query: 484 DPVSSDVVHESLKTLTXXXXXXXXXXXXPFFIDVTLQTRTLLDDENDSLRYSAFVLFGPL 663
++VV ESLK L +F ++ LQTRT +DE D +R +A LF L
Sbjct: 714 HLARTEVVCESLKALKKILELLTDRDVSFYFKEIVLQTRTFFEDEQDDVRLTAIFLFENL 773
Query: 664 AAFAGRKWKRFFTRQVQQTQDSLLNHLQDRNPQ 762
A+ GR+WK FF +++++ S L HL D NP+
Sbjct: 774 ASLTGRRWKIFFAEEIKKSMVSFLLHLWDPNPK 806
>ref|XP_003133791.1| PREDICTED: HEAT repeat-containing protein 7B1 [Sus scrofa].
Length = 1626
Score = 81.6 bits (200), Expect = 4e-16
Identities = 50/149 (33%), Positives = 76/149 (51%)
Frame = +1
Query: 304 LQKREPLKNAVLVLAERARDPSVKKRHMAMRGLGALACETPDKVRKYKKIVLDLLVHGLY 483
L + + LK AVL+L + R +++R LG +A P KVR+Y+K++L+ + L
Sbjct: 1404 LYREKLLKPAVLMLEKGVDQEDEALRVLSLRALGNMALGAPRKVRQYRKLLLEKCLCSLR 1463
Query: 484 DPVSSDVVHESLKTLTXXXXXXXXXXXXPFFIDVTLQTRTLLDDENDSLRYSAFVLFGPL 663
PVS V E ++ L F ++ + RT D+E++ LR AFVLFG L
Sbjct: 1464 GPVSPSVTSEGMEALAKVLAELREGDVGSAFDAISERCRTFFDNESELLRLKAFVLFGKL 1523
Query: 664 AAFAGRKWKRFFTRQVQQTQDSLLNHLQD 750
A G K FF +V++ L+ H QD
Sbjct: 1524 AKVVGISKKHFFKEEVKKAWVPLMLHCQD 1552
>ref|XP_003125514.2| PREDICTED: HEAT repeat-containing protein 7A-like [Sus scrofa].
Length = 616
Score = 48.1 bits (113), Expect = 5e-06
Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 2/138 (1%)
Frame = +1
Query: 343 LAERARDPSVKKRHMAMRGLGALACETPDKVRKYKKIVLDLLVHGL--YDPVSSDVVHES 516
LA R +D R + +RGL +A +PDKVR + +L ++ GL D S V E+
Sbjct: 343 LAARQKDSCASVRRLVLRGLANVATGSPDKVRAHGPQLLTAMIGGLDDGDAAHSLVALEA 402
Query: 517 LKTLTXXXXXXXXXXXXPFFIDVTLQTRTLLDDENDSLRYSAFVLFGPLAAFAGRKWKRF 696
+ L + V ++ R D E R ++ LFG L +
Sbjct: 403 MVGLARLLDLVEAWDLRSVLLHVAIRIRPFFDSEKMEFRAASIRLFGHLNKACRGDCEDV 462
Query: 697 FTRQVQQTQDSLLNHLQD 750
F QV LL HL+D
Sbjct: 463 FLEQVVGGLAPLLLHLRD 480
>ref|XP_003359733.1| PREDICTED: HEAT repeat-containing protein 7B1-like [Sus scrofa].
Length = 1177
Score = 47.8 bits (112), Expect = 7e-06
Identities = 30/104 (28%), Positives = 50/104 (48%)
Frame = +1
Query: 304 LQKREPLKNAVLVLAERARDPSVKKRHMAMRGLGALACETPDKVRKYKKIVLDLLVHGLY 483
L + + LK AVL+L + R +++R LG +A P KVR+Y+K++L+ + L
Sbjct: 1050 LYREKLLKPAVLMLEKGVDQEDEALRVLSLRALGNMALGAPRKVRQYRKLLLEKCLCSLR 1109
Query: 484 DPVSSDVVHESLKTLTXXXXXXXXXXXXPFFIDVTLQTRTLLDD 615
PVS V E ++ L F ++ + RT D+
Sbjct: 1110 GPVSPSVTSEGMEALAKVLAELREGDVGSAFDAISERCRTFFDN 1153
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,738,432
Number of extensions: 576271
Number of successful extensions: 1766
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1763
Number of HSP's successfully gapped: 5
Length of query: 254
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 157
Effective length of database: 8,928,923
Effective search space: 1401840911
Effective search space used: 1401840911
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003510
(762 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 347 5e-93
>Sscrofa_Chr01
|| Length = 315321322
Score = 347 bits (175), Expect = 5e-93
Identities = 184/186 (98%), Gaps = 2/186 (1%)
Strand = Plus / Minus
Query: 431 aggtgagaaagtacaagaagattgtcctagacctgctggtgcatggactgtacgaccctg 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110214540 aggtgagaaagtacaagaagattgtcctagacctgctggtgcatggactgtacgaccctg 110214481
Query: 491 tgagttctgacgtcgtccatgagagcttgaagaccctgaccatcatcctgggcaagatcc 550
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110214480 tgagtt--gacgtcgtccatgagagcttgaagaccctgaccatcatcctgggcaagatcc 110214423
Query: 551 aggggaaaggcttggggcccttcttcatagacgtcacccttcagaccaggactttgctag 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110214422 aggggaaaggcttggggcccttcttcatagacgtcacccttcagaccaggactttgctag 110214363
Query: 611 atgatg 616
||||||
Sbjct: 110214362 atgatg 110214357
Score = 291 bits (147), Expect = 3e-76
Identities = 150/151 (99%)
Strand = Plus / Minus
Query: 284 aggtctcttggaaactgaagctccagaagcgggagcctctgaagaatgctgttttggtct 343
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 110215694 aggtctcttggaaactgaagctccagaagcgggagcctctgaagaatggtgttttggtct 110215635
Query: 344 tggcagagagagcccgggaccccagtgttaaaaagcgtcatatggccatgagaggcctgg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110215634 tggcagagagagcccgggaccccagtgttaaaaagcgtcatatggccatgagaggcctgg 110215575
Query: 404 gagccctggcctgtgaaaccccggacaaggt 434
|||||||||||||||||||||||||||||||
Sbjct: 110215574 gagccctggcctgtgaaaccccggacaaggt 110215544
Score = 276 bits (139), Expect = 2e-71
Identities = 145/147 (98%)
Strand = Plus / Minus
Query: 616 gaaaatgacagcctgaggtactcagcctttgtcttgtttgggccactggcggcctttgct 675
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 110209551 gaaaatgacagcctgaggtactcagcctttgtcttgtttgggcaactggcggcctttgct 110209492
Query: 676 gggaggaagtggaagagatttttcacccgtcaggtgcagcagactcaagattccctcctg 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110209491 gggaggaagtggaagagatttttcacccgtcaggtgcagcagactcaagattccctcctg 110209432
Query: 736 aaccacttacaggatcggaatccccag 762
| |||||||||||||||||||||||||
Sbjct: 110209431 acccacttacaggatcggaatccccag 110209405
Score = 276 bits (139), Expect = 2e-71
Identities = 145/147 (98%)
Strand = Plus / Minus
Query: 616 gaaaatgacagcctgaggtactcagcctttgtcttgtttgggccactggcggcctttgct 675
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 110386356 gaaaatgacagcctgaggtactcagcctttgtcttgtttgggcaactggcggcctttgct 110386297
Query: 676 gggaggaagtggaagagatttttcacccgtcaggtgcagcagactcaagattccctcctg 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110386296 gggaggaagtggaagagatttttcacccgtcaggtgcagcagactcaagattccctcctg 110386237
Query: 736 aaccacttacaggatcggaatccccag 762
| |||||||||||||||||||||||||
Sbjct: 110386236 acccacttacaggatcggaatccccag 110386210
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 60 ggaattcagggctgggaaaattgagtcgagtcatcccatctggctgctaccccggaactg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110274795 ggaattcagggctgggaaaattgagtcgagtcatcccatctggctgctaccccggaactg 110274736
Query: 120 catatctccgcgtcgcccaggacctgtgctccggccacacccaccgcactcatcacgtga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110274735 catatctccgcgtcgcccaggacctgtgctccggccacacccaccgcactcatcacgtga 110274676
Query: 180 ccgccgcag 188
|||||||||
Sbjct: 110274675 ccgccgcag 110274667
Score = 204 bits (103), Expect = 5e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 187 agttccatggaccaaacacagagaagaatgttgggccagcccctttccatccccactgcc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110217353 agttccatggaccaaacacagagaagaatgttgggccagcccctttccatccccactgcc 110217294
Query: 247 cagcctaagaagaaatcaatgatgtctttcttttccaaggtct 289
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110217293 cagcctaagaagaaatcaatgatgtctttcttttccaaggtct 110217251
Score = 117 bits (59), Expect = 9e-24
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 3 atcactttgcctttcatcaggatgagtcctgaggcagaagcctcctcgcctagctcggg 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110280840 atcactttgcctttcatcaggatgagtcctgaggcagaagcctcctcgcctagctcggg 110280782
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,329,491
Number of extensions: 556
Number of successful extensions: 556
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 555
Number of HSP's successfully gapped: 7
Length of query: 762
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 741
Effective length of database: 2,808,413,156
Effective search space: 2081034148596
Effective search space used: 2081034148596
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)